Psyllid ID: psy4688

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MWFDRAEVFLSQNVQMSNLSGSCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCCHICGKKLRGKLKEHMLNT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHccccHHHHHHccccccccccccccHHHccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccHHEEEEccccccccccccccHHHHHHHHcccccccccccccccEccccHHHHHHHHHcccccccccccccccEccccHHHHHHHHHcccccccccccEEccccccEEccHHHHHHHcHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEcccccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHHccccccccccHccccEccccHHHHHHHHcccccccccccccccccccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHccccEEcccccccccccccccEccccHHHHHHHHccccccccccHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MWFDRAEVFLsqnvqmsnlsgscvvDVITADKWRALIKNKtktcpicnksypgarnmRKHLRlvhdknstttctMCKKTFRNKATFQKHMQRAHVGLKisvskhfecnychakfsnkslLSDHisshtglknykchvcdkayscRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVtvcpkcnrdyrnprnmrkhLRRVHTSVRKygcdecgkmlksrdslNTHKKIQHEGKKVKVKYEYECdycgakypnkytlsdhisghtgipnhiCKICNKGYACAASLKIHNIkthlqftgvpiekfkcdlcdkeFFEKKklnkhknwahgdkfhLCKVCGAKIKGSLKQHMIthtgerkycchicgkklRGKLKEHMLNT
Flexible Loop (DISEMBL)
MWFDRAEVFLsqnvqmsnlsgsCVVDVITADKWRALiknktktcpicnksypgarnmrkhlrlvhdknstttctmCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKThtllheqekviksskkefIIDTGDCTLDEWNDFIKrrvtvcpkcnrdyrnprnmrkhlrrvhtsvrkygcdecgkmlksrdslnthkkiqhegkkvkvkYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLnkhknwahgdkFHLCKVCGAKIKGSLKQHMithtgerkycchICGKklrgklkehmlnt
Low Complexity Region (SEG)
MWFDRAEVFLSQNVQMSNLSGSCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGkkvkvkyeyeCDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCCHICGKKLRGKLKEHMLNT
Disordered region (IsUnstruct)
***DRAEVFLSQNVQMSNLSGSCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKML***********IQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCCHICGKKLR**********
Disordered Region (DISOPRED)
MWF***EVFLSQNVQMSNLSGSCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCCHICGKKLRGKLKEHML**
Disordered Region (DISEMBL)
MWFDRAEVFLSQNVQMSNLSGSCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCCHICGKKLRGKLKEHMLNT
Disordered Region (DISPRO)
****RAEVFLSQNVQMSNLSGSCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCCHICGKKLRGKLKE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWFDRAEVFLSQNVQMSNLSGSCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCCHICGKKLRGKLKEHMLNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	388	2.2.26 [Sep-21-2011]
P10076	861	Zinc finger protein 26 OS	yes	N/A	0.835	0.376	0.326	9e-36
Q9EQB9	759	Zinc finger protein 287 O	no	N/A	0.896	0.458	0.292	4e-34
Q9UJU3	913	Zinc finger protein 112 O	yes	N/A	0.847	0.360	0.306	7e-34
Q15935	545	Zinc finger protein 77 OS	no	N/A	0.855	0.609	0.300	8e-33
Q6ZMW2	699	Zinc finger protein 782 O	no	N/A	0.814	0.452	0.301	9e-33
Q14590	738	Zinc finger protein 235 O	no	N/A	0.819	0.430	0.298	2e-32
Q5MCW4	686	Zinc finger protein 569 O	no	N/A	0.747	0.422	0.320	3e-32
Q80W31	679	Zinc finger protein 569 O	no	N/A	0.801	0.458	0.323	4e-32
Q61116	645	Zinc finger protein 235 O	no	N/A	0.770	0.463	0.315	6e-32
Q5TYW1	1059	Zinc finger protein 658 O	no	N/A	0.760	0.278	0.302	8e-32

>sp|P10076|ZFP26_MOUSE Zinc finger protein 26 OS=Mus musculus GN=Zfp26 PE=2 SV=2

 Score =  151 bits (381), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 156/346 (45%), Gaps = 22/346 (6%)

Query: 34  RALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRA 93
           R   + K+  C  C K++     + +H+R  H       C  C   F + +    H+ R 
Sbjct: 294 RQHTREKSYECKECGKTFIQPSRLTEHMR-SHTGEKPYQCDQCGNAFASSSYLTTHL-RT 351

Query: 94  HVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL 153
           H G      K FECN C   F+  S L  HI +HTG K Y+C VC KA+S R  L  H  
Sbjct: 352 HTG-----EKPFECNICGKAFTRSSYLLGHIRTHTGEKPYECKVCGKAFSGRSWLTIHLR 406

Query: 154 LHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHT 213
            H  E+    ++ E    +     +        +   C  C R +RN   ++ H  R+HT
Sbjct: 407 KHTGERPYPCTECEKAFTSFAQLTEHIKTHTGEKPFRCKVCARTFRNSSCLKTHF-RIHT 465

Query: 214 SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISG 273
            ++ Y C+ CGK   +R  L  H  I H G+K      YEC  CG  +     L +HI  
Sbjct: 466 GIKPYKCNYCGKAFTARSGLTKHVLI-HNGEK-----PYECKECGKAFSTSSGLVEHIRI 519

Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHK 333
           HTG     C  C K  A ++SL  H ++TH   TG   + F+C+ CDK F     L  H 
Sbjct: 520 HTGEKPFECYQCGKALAHSSSLVGH-LRTH---TGE--KPFECNQCDKTFTRSSYLRIHM 573

Query: 334 NWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL 377
               G+K + CK CG     +  L +H+ THTGER Y C  CGK  
Sbjct: 574 RTHTGEKPYECKECGKTFPERSCLTKHIRTHTGERPYECKECGKGF 619

May be involved in transcriptional regulation.
Mus musculus (taxid: 10090)

>sp|Q9EQB9|ZN287_MOUSE Zinc finger protein 287 OS=Mus musculus GN=Znf287 PE=2 SV=2

 Score =  145 bits (367), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 175/376 (46%), Gaps = 28/376 (7%)

Query: 4   DRAEVFLSQNVQMSNLSGSCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRL 63
           D+  ++       SN S    V      + + L  +K  +C +C K +    ++  H R 
Sbjct: 334 DKTALYNESKPPFSNASSGGAV------RGKILPGDKPYSCNVCGKQFRKYPSLLAH-RE 386

Query: 64  VHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDH 123
            H K     C  C K F++ ++   H QR H G      K +EC+ C   FS ++ L+ H
Sbjct: 387 NHAKEKAYECEECGKEFKHLSSLIAH-QRMHTG-----EKPYECHQCGKAFSQRAHLTIH 440

Query: 124 ISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDF 183
              HTG K YKC  C K +S R  L  H   H  EK  K  +           ++     
Sbjct: 441 QRIHTGEKPYKCEDCGKDFSQRAHLTIHQRTHTGEKPYKCLECSKTFSHSSSLINHQRVH 500

Query: 184 IKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEG 243
              +  +C +C + +    ++ +H +++HT  + Y C+EC K+      L  H++I H G
Sbjct: 501 TGEKPYICNECGKTFSQSTHLLQH-QKIHTGKKPYKCNECWKVFSQSTYLIRHQRI-HSG 558

Query: 244 KKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTH 303
           +K      Y+C  CG  + +  TL  H + HTG  ++IC +C K ++ +A+L  H+ +TH
Sbjct: 559 EKC-----YKCTACGKAFAHSSTLIQHQTTHTGEKSYICNVCGKAFSQSANLTQHH-RTH 612

Query: 304 LQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIK--GSLKQHMIT 361
              TG   + +KC +C K F +   L +H+   +G+K   C  CG   +   +L QH   
Sbjct: 613 ---TGE--KPYKCSVCGKAFSQSVHLTQHQRIHNGEKPFKCNTCGKAYRQGANLTQHQRV 667

Query: 362 HTGERKYCCHICGKKL 377
           HTGE+ Y CH CGK  
Sbjct: 668 HTGEKPYKCHHCGKAF 683

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q9UJU3|ZN112_HUMAN Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 PE=2 SV=2

 Score =  145 bits (365), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 159/365 (43%), Gaps = 36/365 (9%)

Query: 31  DKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHM 90
           D  R     K   C IC K +     +  H R VH       C  C K F   +  Q H 
Sbjct: 514 DHQRVHTGQKPYKCNICGKGFNHRSVLNVHQR-VHTGEKPYKCEECDKGFSRSSYLQAH- 571

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKT 150
           QR H G      K ++C  C   FS  S L  H   HTG K YKC  C K +S    L+ 
Sbjct: 572 QRVHTG-----EKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQG 626

Query: 151 HTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTV------CPKCNRDYRNPRNM 204
           H  +H  EK  K        + G      +N  I +RV        C +C + +     +
Sbjct: 627 HQRVHTGEKPFKCE------ECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTL 680

Query: 205 RKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNK 264
             H +RVHT  + Y CDECGK    R  L +H+ + H G++      Y C+ CG  +  +
Sbjct: 681 LAH-QRVHTGEKPYQCDECGKSFSQRSYLQSHQSV-HSGERP-----YICEVCGKGFSQR 733

Query: 265 YTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFF 324
             L  H   HT +  + C++C KG++ ++ L+ H     +   G P   +KC++C K F 
Sbjct: 734 AYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHR---RVHTGGKP---YKCEVCTKGFS 787

Query: 325 EKKKLNKHKNWAHGDKFHLCKVCGAKIKG--SLKQHMITHTGERKYCCHICGKKL--RGK 380
           E  +L  H+      + + C+ CG    G  SL+ H   HTGE+ Y C +CGK    R  
Sbjct: 788 ESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSN 847

Query: 381 LKEHM 385
           L+ H 
Sbjct: 848 LQAHQ 852

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q15935|ZNF77_HUMAN Zinc finger protein 77 OS=Homo sapiens GN=ZNF77 PE=2 SV=2

 Score =  141 bits (356), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 159/356 (44%), Gaps = 24/356 (6%)

Query: 34  RALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRA 93
           ++L   K+  C  C K++    + R H+   H +  T  C +C KTF   +   +H+ R 
Sbjct: 204 KSLSSKKSYECQKCGKAFICPSSFRGHVNSHHGQK-THACKVCGKTFMYYSYLTRHV-RT 261

Query: 94  HVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL 153
           H G K      +EC  C   FS  S   +H+ +HTG K Y+C  C K++SC  + + H  
Sbjct: 262 HTGEKP-----YECKECGKAFSCPSYFREHVRTHTGEKPYECKHCGKSFSCYSSFRDHVR 316

Query: 154 LHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHT 213
            H  EK  +               +        +   C +C + +R P ++R H+R +HT
Sbjct: 317 THTGEKPCQCKHCGKAFTCYSSLREHGRTHSGEKPYECKECGKAFRYPSSLRAHMR-MHT 375

Query: 214 SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISG 273
             + Y C +CGK          H K  H G K      Y+C  CG  Y    +L  H+  
Sbjct: 376 GEKPYVCKQCGKAFGCPTYFRRHVKT-HSGVK-----PYQCKECGKAYSFSSSLRIHVRT 429

Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHK 333
           HTG     CK C K ++C +SL+ H ++TH        + ++C+ C K F   +   KH 
Sbjct: 430 HTGEKPFECKHCGKAFSCHSSLREH-VRTH-----SGEKPYECNQCGKAFSHAQYFQKHV 483

Query: 334 NWAHGDKFHLCKVCGAKIK--GSLKQHMITHTGERKYCCHICGKKLR--GKLKEHM 385
               G K + C  CG       SL+ H+ THTGER Y C  CGK  R    L+ H+
Sbjct: 484 RSHSGVKPYECTECGKAYSCSSSLRVHVRTHTGERPYECKQCGKTFRYLASLQAHV 539

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6ZMW2|ZN782_HUMAN Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1

 Score =  141 bits (355), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 164/368 (44%), Gaps = 52/368 (14%)

Query: 22  SCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFR 81
           SC ++       ++    K   CP C K++     +RKH R  H       C  C K F 
Sbjct: 374 SCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQR-THTGEKPYKCDGCDKAFS 432

Query: 82  NKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKA 141
            K+  + H QR H G      K FEC+ C   F+ KS+L  H  +HTG K ++C+ C K+
Sbjct: 433 AKSGLRIH-QRTHTG-----EKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKS 486

Query: 142 YSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNP 201
           +S    L+ H   H  E+  K                            C +C + ++  
Sbjct: 487 FSHMSGLRNHRRTHTGERPYK----------------------------CDECGKAFKLK 518

Query: 202 RNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKY 261
             +RKH  R HT  + Y C++CGK    +  L  H +I H G+K      Y+C++CG  +
Sbjct: 519 SGLRKH-HRTHTGEKPYKCNQCGKAFGQKSQLRGHHRI-HTGEKP-----YKCNHCGEAF 571

Query: 262 PNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDK 321
             K  L  H   HTG   + C+ C K +   ++L+ H      Q T    + ++C+ C K
Sbjct: 572 SQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGH------QRTHTGEKPYECNECGK 625

Query: 322 EFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKLRG 379
            F EK  L KH+    G+K + C  CG     K +L+ H  THTGE+ Y C  CG+    
Sbjct: 626 AFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQ 685

Query: 380 K--LKEHM 385
           K  L+EH 
Sbjct: 686 KSSLREHQ 693

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q14590|ZN235_HUMAN Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 157/352 (44%), Gaps = 34/352 (9%)

Query: 34  RALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRA 93
           R     K  TC  C KS+  + ++  HL  +H       C  C K F        H  R 
Sbjct: 339 RVHTGEKPYTCHECGKSFNQSSHLYAHL-PIHTGEKPYRCDSCGKGFSRSTDLNIHC-RV 396

Query: 94  HVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL 153
           H G      K ++C  C   F+ +S L  H   HTG K YKC  C K +SC   L TH  
Sbjct: 397 HTG-----EKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQR 451

Query: 154 LHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTV------CPKCNRDYRNPRNMRKH 207
           +H +EK  K        + G C    +N    +RV        C +C + + +  + + H
Sbjct: 452 VHTEEKPYKCD------ECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSH 505

Query: 208 LRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTL 267
            +RVHT  + + C+ CGK          H+++ H G+K      Y+C+ CG ++     L
Sbjct: 506 -QRVHTGEKPFRCNVCGKGFSQSSYFQAHQRV-HTGEK-----PYKCEVCGKRFNWSLNL 558

Query: 268 SDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKK 327
            +H   HTG   + C+ C KG++ A++L+ H      Q      + FKCD C K F +  
Sbjct: 559 HNHQRVHTGEKPYKCEECGKGFSQASNLQAH------QSVHTGEKPFKCDACQKRFSQAS 612

Query: 328 KLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL 377
            L  H+    G+K + C  CG     + +L+ H I HTGE+ + C  CGK+ 
Sbjct: 613 HLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEF 664

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5MCW4|ZN569_HUMAN Zinc finger protein 569 OS=Homo sapiens GN=ZNF569 PE=2 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 156/340 (45%), Gaps = 50/340 (14%)

Query: 40  KTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKI 99
           K   C  C K++P   ++  H+R  H       C  C K F   +    H+ R H G   
Sbjct: 324 KPYACNECGKAFPRIASLALHMR-SHTGEKPYKCDKCGKAFSQFSMLIIHV-RIHTG--- 378

Query: 100 SVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
              K +ECN C   FS  S L+ H+ SHTG K Y+C  C KA+S +K   TH  +H +EK
Sbjct: 379 --EKPYECNECGKAFSQSSALTVHMRSHTGEKPYECKECRKAFSHKKNFITHQKIHTREK 436

Query: 160 VIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYG 219
             +                            C +C + +    N+ +H +R+HT  + Y 
Sbjct: 437 PYE----------------------------CNECGKAFIQMSNLVRH-QRIHTGEKPYI 467

Query: 220 CDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPN 279
           C ECGK    + +L  H+KI H G+K      YEC+ CG  +  K     H   HTG   
Sbjct: 468 CKECGKAFSQKSNLIAHEKI-HSGEK-----PYECNECGKAFSQKQNFITHQKVHTGEKP 521

Query: 280 HICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGD 339
           + C  C K ++  ASL +H +++H   TG   + ++CD C K F +   LN H     G+
Sbjct: 522 YDCNECGKAFSQIASLTLH-LRSH---TGE--KPYECDKCGKAFSQCSLLNLHMRSHTGE 575

Query: 340 KFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL 377
           K ++C  CG     + SL  HM  HTGE+ Y C+ CGK  
Sbjct: 576 KPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCGKAF 615

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q80W31|ZN569_MOUSE Zinc finger protein 569 OS=Mus musculus GN=Znf569 PE=2 SV=2

 Score =  139 bits (350), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 161/349 (46%), Gaps = 38/349 (10%)

Query: 39  NKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLK 98
            K   C  C KS+   +++  H + VH       C  C K F   A+   HM R H G  
Sbjct: 288 EKPYKCNECGKSFSQKQSLVAHQK-VHTGEKPYACNECGKAFPRVASLALHM-RGHTG-- 343

Query: 99  ISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQE 158
               K ++C+ C   FS  S+L  H+  HTG K Y+C  C KA+S   AL  H   H  E
Sbjct: 344 ---EKPYKCDKCGKAFSQFSMLIIHVRVHTGEKPYECGECGKAFSQSSALTVHIRSHTGE 400

Query: 159 KVIK--------SSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRR 210
           K  +        S KK FI      T        + +   C +C + +    N+ +H +R
Sbjct: 401 KPYECKECRKSFSHKKNFITHQKIHT--------REKPYGCNECGKAFIQMSNLVRH-QR 451

Query: 211 VHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDH 270
           +HT  + Y C ECGK    + +L  H+KI H G+K      YEC+ CG  +  K     H
Sbjct: 452 IHTGEKPYLCKECGKAFSQKSNLIAHEKI-HSGEK-----PYECNECGKAFSQKQNFITH 505

Query: 271 ISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLN 330
              HTG   + C  C K ++  ASL +H +++H   TG   + ++C+ C K F +   LN
Sbjct: 506 QKVHTGEKPYDCNKCGKAFSQIASLTLH-LRSH---TGE--KPYECEKCGKAFSQCSLLN 559

Query: 331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL 377
            H     G+K ++C  CG     + SL  HM  HTGE+ Y C+ CGK  
Sbjct: 560 LHMRSHTGEKPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCGKAF 608

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q61116|ZN235_MOUSE Zinc finger protein 235 OS=Mus musculus GN=Znf235 PE=2 SV=1

 Score =  138 bits (348), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 154/342 (45%), Gaps = 43/342 (12%)

Query: 64  VHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDH 123
           VH       C  C K FR  +  Q H QR H G      K + C+ C   FS  S L+ H
Sbjct: 278 VHPGRKRYWCHECGKGFRQSSALQTH-QRVHTG-----EKPYRCDSCGKGFSRSSDLNIH 331

Query: 124 ISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSK--KEFIIDTGDCTLDEWN 181
              HTG K YKC VC K ++    L+ H  +H  EK  K     K F   +   T    +
Sbjct: 332 RRVHTGEKPYKCEVCGKGFTQWAHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVH 391

Query: 182 DFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQH 241
              + +   C +C + +    N+  H +RVHT  + Y C+ECGK   S  S  +H+++ H
Sbjct: 392 --TEEKPYECNECGKRFSLSGNLDIH-QRVHTGEKPYKCEECGKGFSSASSFQSHQRV-H 447

Query: 242 EGKKV-----------------------KVKYEYECDYCGAKYPNKYTLSDHISGHTGIP 278
            G+K                          +  Y C+ CG ++P   +L  H S HTG  
Sbjct: 448 TGEKPFHCSVCGKNFSRSSHFLDHQRIHTGEKPYRCEVCGKRFPWSLSLHSHQSVHTGKK 507

Query: 279 NHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHG 338
            + C  C KG++ A+SL+ H    H   TG   + FKC++C K+F +   L  H+    G
Sbjct: 508 PYKCGECGKGFSHASSLQAH----HSVHTGE--KPFKCNVCQKQFSKTSNLQAHQRVHTG 561

Query: 339 DKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKLR 378
           +K + C  CG     K SL+ H   HTGE+ + C  CGK+ R
Sbjct: 562 EKPYKCDTCGKAFSQKSSLQVHQRIHTGEKPFKCEECGKEFR 603

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q5TYW1|ZN658_HUMAN Zinc finger protein 658 OS=Homo sapiens GN=ZNF658 PE=2 SV=2

 Score =  138 bits (347), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 155/347 (44%), Gaps = 52/347 (14%)

Query: 34  RALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRA 93
           R L+  K   C  C K++    ++R H R +H       C  C+KTF +K     H QR 
Sbjct: 510 RILMGEKPYECIECGKTFSKTSHLRAHQR-IHTGEKPYECVECEKTFSHKTHLSVH-QRV 567

Query: 94  HVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL 153
           H G      K +ECN C   F+  S L  H   HTG K Y+C  C+K ++   AL+ H  
Sbjct: 568 HTG-----EKPYECNDCGKSFTYNSALRAHQRIHTGEKPYECSDCEKTFAHNSALRAHHR 622

Query: 154 LHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHT 213
           +H  EK  +                            C +C R + +   ++ H +R+HT
Sbjct: 623 IHTGEKPYE----------------------------CNECGRSFAHISVLKAH-QRIHT 653

Query: 214 SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISG 273
             + Y C+ECG+      +L  H++I H G+K      YEC  C   + +   L  H   
Sbjct: 654 GEKPYECNECGRSFTYNSALRAHQRI-HTGRKP-----YECSDCEKTFAHNSALKIHQRI 707

Query: 274 HTGIPNHICKICNKGYACAASLKIH-NIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKH 332
           HTG   + C  C K +A  ++L+ H NI T  +        ++C  C K FF+K +L+ H
Sbjct: 708 HTGEKPYECNECEKTFAHNSALRAHQNIHTGEKL-------YECSECGKTFFQKTRLSTH 760

Query: 333 KNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL 377
           +    G+K + C  CG     K  L  H   HTGE+ Y C++CGK  
Sbjct: 761 RRIHTGEKPYECSKCGKTFSQKSYLSGHERIHTGEKPYECNVCGKTF 807

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
334327353	1783	PREDICTED: hypothetical protein LOC10001	0.840	0.182	0.310	4e-38
328726418	484	PREDICTED: zinc finger protein 271-like	0.819	0.657	0.319	5e-37
328726602	740	PREDICTED: zinc finger protein Xfin-like	0.817	0.428	0.317	2e-36
348543788	502	PREDICTED: zinc finger protein 99-like [	0.873	0.675	0.301	3e-36
328711731	588	PREDICTED: zinc finger protein 271-like	0.855	0.564	0.299	5e-36
328711363	643	PREDICTED: zinc finger protein 845-like	0.837	0.505	0.308	5e-36
334327315	1486	PREDICTED: hypothetical protein LOC10061	0.783	0.204	0.302	2e-35
395529134	2041	PREDICTED: uncharacterized protein LOC10	0.755	0.143	0.317	2e-34
326676493	689	PREDICTED: zinc finger protein 845-like	0.783	0.441	0.32	2e-34
358417009	1448	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.775	0.207	0.316	3e-34

>gi|334327353|ref|XP_001371662.2| PREDICTED: hypothetical protein LOC100018428 [Monodelphis domestica]

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 108/348 (31%), Positives = 154/348 (44%), Gaps = 22/348 (6%)

Query: 30   ADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKH 89
            A+  R     K   C +C K +  +     H R +H       C  C KTFR +  F KH
Sbjct: 1408 AEHQRIHTGEKPYECKVCGKVFRYSSAFAAHQR-IHTGQMPYKCNQCGKTFRYRNVFAKH 1466

Query: 90   MQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALK 149
             QR H G      K +EC  C   F++ S L+ H   HTG K Y C  C KA+  R  L 
Sbjct: 1467 -QRIHTG-----EKPYECRQCGKTFTSNSQLAVHHRIHTGEKPYDCKQCGKAFIRRDQLA 1520

Query: 150  THTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLR 209
             H  +H  EK  +  + E   +      +        +   C +C + + +  ++  H +
Sbjct: 1521 VHLRIHTGEKPHECKQCEKTFNRKSSLAEHQKTHTGEKPYECKQCGKTFSHSSSLAAH-Q 1579

Query: 210  RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSD 269
            R+HT  + Y C +CGK    R     H++I H G+K      Y+C  CG  +    TLS 
Sbjct: 1580 RIHTGEKPYDCKQCGKTFSQRSHFAAHQRI-HTGEK-----PYDCKQCGKTFSQSSTLSV 1633

Query: 270  HISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKL 329
            H   HTG   + CK C K +   ++L +H  +TH   TG   + ++C  C+  F E   L
Sbjct: 1634 HQRIHTGEKPYKCKQCGKTFTNNSNLAVHQ-RTH---TGE--KPYECKYCEMTFSESSSL 1687

Query: 330  NKHKNWAHGDKFHLCKVCGAKIK--GSLKQHMITHTGERKYCCHICGK 375
              H+    G+K + CK CG       SL  H   HTGE+ Y C  CGK
Sbjct: 1688 AVHQRIHTGEKPYDCKQCGKTFSQSSSLAAHQRIHTGEKPYECKQCGK 1735

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328726418|ref|XP_003248889.1| PREDICTED: zinc finger protein 271-like [Acyrthosiphon pisum]

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 163/354 (46%), Gaps = 36/354 (10%)

Query: 33  WRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQR 92
           WR     K   C +C+KS+     +  HLR  H       C +C+KTF + +T  +H +R
Sbjct: 8   WRTHTGEKPYLCDVCDKSFSQRGTLEYHLR-THTGEKPYPCDVCEKTFGSSSTLTEH-RR 65

Query: 93  AHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHT 152
            H G K      + C+ C   F + S L++H  +HTG K Y C VCDK +     L  H 
Sbjct: 66  THTGEKP-----YPCDVCDKTFGSSSTLTEHRRTHTGEKPYPCDVCDKTFGSSSTLTKHR 120

Query: 153 LLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVT-------VCPKCNRDYRNPRNMR 205
             H  E       K +  D  D T    +   K R T        C  C++ + +   + 
Sbjct: 121 RTHTGE-------KPYSCDVCDKTFGSSSTLTKHRRTHTGEKPYPCDVCDKTFGSSSTLT 173

Query: 206 KHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKY 265
           KH RR HT  + Y CD C K   S  +L  H++  H G+K      Y CD C   +  K 
Sbjct: 174 KH-RRTHTGEKPYPCDVCEKTFGSSSNLTKHRRT-HTGEK-----PYPCDVCDKSFSQKS 226

Query: 266 TLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFE 325
            L +HI  HTG   + C +C+K ++   +L+ H ++TH   TG   + + CD+C+K F  
Sbjct: 227 ILENHIRTHTGEKPYSCDLCDKSFSQRGTLEYH-LRTH---TGE--KPYPCDVCEKTFGS 280

Query: 326 KKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERKYCCHICGKKL 377
              L KH+    G+K + C VC      S  L +H  THTGE+ Y C +C K  
Sbjct: 281 SSTLTKHRRTHTGEKPYPCDVCDKTFGSSSTLTEHRRTHTGEKPYPCDVCDKTF 334

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328726602|ref|XP_003248963.1| PREDICTED: zinc finger protein Xfin-like [Acyrthosiphon pisum]

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 157/353 (44%), Gaps = 36/353 (10%)

Query: 34  RALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRA 93
           R     K   C IC KS+  +  ++KH R  H       C +C K+F        H +R 
Sbjct: 369 RTHTGEKPYACDICEKSFSDSGRLKKHRR-THTGEKPFACDICNKSFSQSCNLTTH-RRT 426

Query: 94  HVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL 153
           H G K      F C+ C   FS    L+ H  +HTG K Y C VC+K++S    LK H  
Sbjct: 427 HTGEKP-----FACDVCDMSFSQSGTLTSHRRTHTGEKPYACDVCEKSFSESDTLKKHRR 481

Query: 154 LHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVT-------VCPKCNRDYRNPRNMRK 206
            H  EK        +  D  + +  E     K R T        C  C+  +     +  
Sbjct: 482 THTGEKP-------YACDVCEKSFSESGTLKKHRRTHTGEKPFACDVCDMSFSQSGTLTS 534

Query: 207 HLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYT 266
           H RR HT  + Y CD C K     D+L  H++  H G+K      + CD C   +    +
Sbjct: 535 H-RRTHTGEKPYACDVCEKSFSGSDTLKKHRRT-HTGEKP-----FACDVCDMSFAESSS 587

Query: 267 LSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEK 326
           L+ H   HTG   + C +C K ++ + +LK H  +TH   TG   + F CD+CD  F E 
Sbjct: 588 LTSHRRTHTGEKPYACDVCEKSFSESGTLKKHR-RTH---TGE--KPFACDVCDMSFAES 641

Query: 327 KKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL 377
             L +H+    G+K ++C VC       GSLK H  THTGE+ + C +CGK  
Sbjct: 642 SSLTRHRRTHTGEKPYICDVCDKSFSKSGSLKSHRRTHTGEKPFVCDVCGKSF 694

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348543788|ref|XP_003459364.1| PREDICTED: zinc finger protein 99-like [Oreochromis niloticus]

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 171/372 (45%), Gaps = 33/372 (8%)

Query: 21  GSCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTF 80
           G C  D+++ +        K   C +C KS+  A +++KH +L+H      +C +C K+F
Sbjct: 69  GLCAGDILSTN-----CGVKPYNCDLCGKSFTEAGSLKKH-QLIHSGVKPYSCKLCGKSF 122

Query: 81  RNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDK 140
                 +KH Q  H G+K      + C+ C   F+    L  H   H+G+K Y C +C K
Sbjct: 123 TQAGGLKKH-QLIHSGVKP-----YSCDLCGKSFTQAQSLKTHQLIHSGVKPYSCDLCGK 176

Query: 141 AYSCRKALKTHTLLHEQEKVI--KSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDY 198
           +++  ++LKTH L+H   K    K   K F    G  T    +  +K     C  C + +
Sbjct: 177 SFTVAQSLKTHQLIHSGVKPYSCKLCGKSFTQAGGLKTHQLIHSGVKPY--SCDMCGKSF 234

Query: 199 RNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCG 258
               +++KH + +H+  + Y C+ CGK       L  H+ I H G K      Y CD CG
Sbjct: 235 TEAGSLKKH-QLIHSGFKPYSCEFCGKSFTEAGGLKKHQLI-HSGVK-----PYSCDLCG 287

Query: 259 AKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDL 318
             +     L  H   H+G+  + CK+C K +  A  LK H      Q     ++ + C+L
Sbjct: 288 KSFTVAQNLKTHQLIHSGVKPYSCKLCGKSFTQAGHLKTH------QLIHSGVKPYSCEL 341

Query: 319 CDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKK 376
           C K F E   L KH+    G K + C++CG      G LK H + H+G + Y C +CGK 
Sbjct: 342 CGKSFTEAGSLKKHQLIHSGVKAYSCELCGKSFTQAGGLKTHQLIHSGVKAYNCDLCGKS 401

Query: 377 L--RGKLKEHML 386
               G LK H L
Sbjct: 402 FTEAGHLKTHQL 413

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328711731|ref|XP_003244624.1| PREDICTED: zinc finger protein 271-like [Acyrthosiphon pisum]

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 169/384 (44%), Gaps = 52/384 (13%)

Query: 34  RALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRA 93
           R     K   C +CN S+  + ++  H R  H       C +C+K+F +  T +KH +R 
Sbjct: 77  RTHTGEKPYICDVCNMSFSQSGSLTSHRR-THTGEKPYACDICEKSFSDSGTLKKH-RRT 134

Query: 94  HVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL 153
           H G K      F C+ C   F+  S L+ H  +HTG K Y C +C+K++S    LK H  
Sbjct: 135 HTGEKP-----FTCDICEKSFAESSSLTSHRRTHTGEKPYACDICEKSFSDSGTLKKHRR 189

Query: 154 LHEQEKVIK---------------------SSKKEFIIDTGDCTLDEWNDFIKRRVT--- 189
            H  EK                        + +K +I D  + +  +       R T   
Sbjct: 190 THTGEKPFACDICDKSFSQSCNLTTHRRTHTGEKPYICDVCNMSFSQSGSLTSHRRTHTG 249

Query: 190 ----VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
                C  C + + +   ++KH RR HT  + + CD C         L TH++  H G+K
Sbjct: 250 EKPYACDICEKSFSDSGTLKKH-RRTHTGEKPFACDICDMSFSQSCHLTTHRRT-HTGEK 307

Query: 246 VKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQ 305
                 Y CD C   +    TL+ H   HTG   + C +C+  ++ + SLK H  +TH  
Sbjct: 308 -----PYACDVCEKSFSKSGTLTSHRRTHTGEKPYACDVCDMSFSQSGSLKKHR-RTH-- 359

Query: 306 FTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIK--GSLKQHMITHT 363
            TG   + F+CD+CDK F E   L +H+    GDK + C VC       G+L  H  +HT
Sbjct: 360 -TGE--KPFECDICDKSFAESSSLTRHRRTHTGDKPYACDVCEMSFSKNGTLTSHRRSHT 416

Query: 364 GERKYCCHICGKKL--RGKLKEHM 385
           GE+ Y C +C K     GKL  H 
Sbjct: 417 GEKPYICDVCDKSFSESGKLTTHQ 440

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711363|ref|XP_001946669.2| PREDICTED: zinc finger protein 845-like [Acyrthosiphon pisum]

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/363 (30%), Positives = 168/363 (46%), Gaps = 38/363 (10%)

Query: 34  RALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRA 93
           R     K   C +C+K++  +  + +H R  H      +C +C KTF +  T  KH +R 
Sbjct: 93  RTHTGEKPYPCDVCDKTFGSSSTLTEHRR-THTGEKPYSCDVCDKTFGSSGTLTKH-RRT 150

Query: 94  HVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL 153
           H G K      + C+ C   F + S L++H  +HTG K Y C VCDK +     L  H  
Sbjct: 151 HTGEKP-----YPCDVCDKTFGSSSTLTEHRRTHTGEKPYPCDVCDKTFGSSSNLTEHRR 205

Query: 154 LHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVT-------VCPKCNRDYRNPRNMRK 206
            H  E       K +  D  D T    ++  + R T        C  C++ + +   + K
Sbjct: 206 THTGE-------KPYPCDVCDKTFGSSSNLTEHRRTHTGEKPYPCDVCDKTFGSSSTLTK 258

Query: 207 HLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYT 266
           H RR HT  + Y CD C K   S  +L  H++  H G+K      Y CD C   + +   
Sbjct: 259 H-RRTHTGEKPYSCDVCDKTFGSSSNLTKHRRT-HTGEK-----PYSCDVCDKTFGSSSN 311

Query: 267 LSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEK 326
           L+ H   HTG   + C +C+K +  + +L  H  +TH   TG   + + CD+CDK F   
Sbjct: 312 LTKHRRTHTGEKPYPCDVCDKTFGSSNTLTEHR-RTH---TGE--KPYPCDVCDKTFGSS 365

Query: 327 KKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL--RGKLK 382
             L KH+    G+K + C VC      +G+L+ H+ THTG + Y C +C K    RG L+
Sbjct: 366 GTLTKHRRTHTGEKPYPCDVCDKSFSQRGTLEYHLRTHTGNKPYSCDVCDKSFSQRGTLE 425

Query: 383 EHM 385
            H+
Sbjct: 426 YHL 428

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|334327315|ref|XP_003340863.1| PREDICTED: hypothetical protein LOC100617363 [Monodelphis domestica]

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 107/354 (30%), Positives = 156/354 (44%), Gaps = 50/354 (14%)

Query: 34   RALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRA 93
            R     K   C  C K++    ++  H R +H       C  C KTF  K     H QR 
Sbjct: 952  RMYTGEKPYECKQCGKTFTRTSSLAIHQR-IHTGEKPYECKQCGKTFNQKFHLALH-QRL 1009

Query: 94   HVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL 153
            H G      K +EC  C   F+ +S L+ H   HTG K Y+C  C K +  R +L  H  
Sbjct: 1010 HTG-----EKPYECKQCGKTFNQRSHLAIHQRIHTGEKPYECKQCGKTFIQRSSLAVHQR 1064

Query: 154  LHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHT 213
            +H  EK  +                            C +C + ++    +  H +R+HT
Sbjct: 1065 MHTGEKPYE----------------------------CKQCGKTFKRRSYLAVH-QRMHT 1095

Query: 214  SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISG 273
              + Y C +CGK  K R  L  H +I H G+K      YEC+ CG  + +  +L+ H   
Sbjct: 1096 GEKLYECKQCGKTFKRRSYLAVHLRI-HTGEK-----PYECNQCGKTFTSTSSLAVHQRM 1149

Query: 274  HTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHK 333
            HTG   + C  C K +AC +SL +H  + H   TG   + ++C+ C   F ++  L  H+
Sbjct: 1150 HTGEKPYECNQCGKTFACTSSLAVHQ-RMH---TGE--KPYECNQCGNTFNQRSYLVVHQ 1203

Query: 334  NWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKLRGKLKEHM 385
                G+K + CK CG       SL +H  THTGE+ Y C  CGK    +L E++
Sbjct: 1204 RIHTGEKPYECKQCGKTFTCTSSLGKHQRTHTGEKPYECQQCGKTFSQRLAENV 1257

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395529134|ref|XP_003766675.1| PREDICTED: uncharacterized protein LOC100931225 [Sarcophilus harrisii]

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 109/343 (31%), Positives = 151/343 (44%), Gaps = 50/343 (14%)

Query: 40   KTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKI 99
            K   C  C KSY     +  H R +H       C  C K +R KA   KH QR H G   
Sbjct: 1731 KPYECDQCGKSYRQKAYLTIHQR-IHTGEKPYECDQCGKAYRQKAYLMKH-QRIHTG--- 1785

Query: 100  SVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
               K +EC+ C   ++ K+ L  H   HTG K Y+C  C KAY  +  L  H  +H  EK
Sbjct: 1786 --EKPYECDQCRKAYTQKAYLIIHQRIHTGEKPYECDQCGKAYRQKAYLMIHQRIHTGEK 1843

Query: 160  VIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYG 219
              +                            C +C + +R   +   H + VHT V++Y 
Sbjct: 1844 PYE----------------------------CDQCGKTFRTNSHFIVH-QGVHTEVKQYK 1874

Query: 220  CDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPN 279
            C+ECGK  K+   L  H++I H G+K      YEC +CG  +   ++L+ H+  HTG   
Sbjct: 1875 CNECGKAYKNNHGLVVHQRI-HTGEK-----PYECHHCGKSFRYSFSLTVHLRIHTGEKP 1928

Query: 280  HICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGD 339
            + C  C K Y     L +H  + H   TG   + ++C  C K F +     KH+    G+
Sbjct: 1929 YQCHECGKAYKQKTRLTVHQ-RIH---TGE--KPYQCQECGKTFRKNNNFVKHQRVHTGE 1982

Query: 340  KFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGKKLRGK 380
            K + C  CG   K K  L+ H   HTGE+ Y C  CGK  R K
Sbjct: 1983 KPYECDRCGKAYKQKSCLRIHQRIHTGEKPYECDQCGKAFRQK 2025

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326676493|ref|XP_689690.3| PREDICTED: zinc finger protein 845-like [Danio rerio]

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 165/350 (47%), Gaps = 46/350 (13%)

Query: 43  TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
           TCP C+K +    ++  HL+ +H      TC  C K FR K + + HM R H G      
Sbjct: 94  TCPECDKCFTMKHSLESHLK-IHTGEKPFTCPDCGKKFRIKHSLEGHM-RIHTG-----E 146

Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK--- 159
           K ++C  C   F  K +L  H++ HTG K Y C  C + +  +K L+ H   H  EK   
Sbjct: 147 KPYKCRECGKNFREKQILDKHLTIHTGEKPYSCPECGRNFRVKKCLENHIKTHTGEKPYT 206

Query: 160 ---------VIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRR 210
                    V ++ K+   I TG+            +   CP+C R +R  ++++ H+ R
Sbjct: 207 CQDCGISFAVKQNLKRHMRIHTGE------------KPYSCPECGRSFRVKQDLKSHV-R 253

Query: 211 VHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDH 270
           +HT  + + C +CGK      +L +H +I H G+K      + C  CG  +  K  L  H
Sbjct: 254 IHTGEKPFSCQQCGKSFSENKTLESHMRI-HTGEKP-----FTCSQCGKNFRRKQNLKSH 307

Query: 271 ISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLN 330
           +  HTG   + C  C K Y    SL+ H I+TH   TG   + F CD C K F ++  L 
Sbjct: 308 MRLHTGDKPYSCPQCGKSYNEQKSLENH-IRTH---TGE--KPFACDQCGKTFTQQSTLR 361

Query: 331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKLR 378
            H     G+K + C+ CG     K +LK+HM  HTGE+ + C  CGK  R
Sbjct: 362 GHIKIHTGEKPYTCQECGKSFTEKQNLKRHMRIHTGEKPFTCSHCGKSFR 411

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|358417009|ref|XP_002702020.2| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 91, partial [Bos taurus]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 156/351 (44%), Gaps = 50/351 (14%)

Query: 30  ADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKH 89
           AD  R     K   C +C+K++  A N+  H R +H       C +C K F +    Q H
Sbjct: 482 ADHRRVHTGEKPYKCNVCDKAFSRAANLTVHWR-IHTGEKPYKCDVCGKAFNHTTRLQLH 540

Query: 90  MQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALK 149
            QR H G      K ++CN C   FS+ S LS H   HTG+K YKC +C +A+S   +L 
Sbjct: 541 -QRIHTG-----EKPYKCNVCERAFSHTSSLSVHRRLHTGVKPYKCDICGRAFSQTASLA 594

Query: 150 THTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLR 209
            H  +H  EK  K                            C  C + +     +R H R
Sbjct: 595 LHRSIHTGEKPYK----------------------------CDVCGKAFNQTAKLRLH-R 625

Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSD 269
           R+HT  + Y C  CGK       L  H++I H G+K      Y+C+ C   + +   L+ 
Sbjct: 626 RIHTGEKPYKCCVCGKAFSHTTGLELHQRI-HTGEK-----PYKCNVCDKAFSHSSNLTV 679

Query: 270 HISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKL 329
           H   H G   + C IC KG++ ++SL +H      Q      + +KCD C K F +  KL
Sbjct: 680 HRRLHAGEKPYKCDICGKGFSVSSSLAVH------QRVHTGEKPYKCDTCGKAFNQTAKL 733

Query: 330 NKHKNWAHGDKFHLCKVCGAKIK--GSLKQHMITHTGERKYCCHICGKKLR 378
             H+    G+K + C VCG      G+L  H   HTGE+ Y C +CGK  R
Sbjct: 734 GLHQKIHTGEKSYKCDVCGKAFSRTGNLTVHRRVHTGEKPYKCDMCGKAFR 784

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
ZFIN|ZDB-GENE-110913-23	569	si:dkey-122c11.8 "si:dkey-122c	0.832	0.567	0.315	5e-44
ZFIN|ZDB-GENE-110914-6	789	si:dkey-77p23.3 "si:dkey-77p23	0.829	0.408	0.333	6.8e-44
ZFIN|ZDB-GENE-070424-49	459	zgc:162972 "zgc:162972" [Danio	0.829	0.701	0.326	1.3e-43
ZFIN|ZDB-GENE-110913-39	639	si:dkey-202n8.1 "si:dkey-202n8	0.824	0.500	0.325	1.7e-43
ZFIN|ZDB-GENE-120214-30	454	si:ch1073-127d16.1 "si:ch1073-	0.822	0.702	0.321	2.2e-43
ZFIN|ZDB-GENE-110914-166	1002	si:ch73-266f23.2 "si:ch73-266f	0.829	0.321	0.324	1.5e-42
ZFIN|ZDB-GENE-060531-126	981	si:dkey-261j4.5 "si:dkey-261j4	0.801	0.317	0.310	3e-42
ZFIN|ZDB-GENE-110914-121	541	si:ch211-202h22.10 "si:ch211-2	0.840	0.602	0.294	3.2e-42
ZFIN|ZDB-GENE-110913-165	820	si:dkeyp-4f2.4 "si:dkeyp-4f2.4	0.829	0.392	0.309	3.5e-42
ZFIN|ZDB-GENE-110913-163	485	si:ch211-209p16.2 "si:ch211-20	0.829	0.663	0.318	1.1e-41

ZFIN|ZDB-GENE-110913-23 si:dkey-122c11.8 "si:dkey-122c11.8" [Danio rerio (taxid:7955)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 112/355 (31%), Positives = 158/355 (44%)

Query:    40 KTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKI 99
             K  TC  C KS+  + ++  H+R +H      TCT C   F   +   +HM   H G   
Sbjct:   221 KPFTCTQCRKSFSCSSHLNHHMR-IHTGEKPFTCTQCGNRFSRSSNLNQHMM-IHTG--- 275

Query:   100 SVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
                K F C  C   FS  S L+ H+  HTG K + C  C K++     L  H  +H  EK
Sbjct:   276 --EKPFTCTQCGKSFSQSSSLNHHMRIHTGEKPFTCTQCGKSFIQSSQLNRHMRIHTGEK 333

Query:   160 ----VIKSSKKEFIIDTGDCTLD-EWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTS 214
                   K   K F   +    LD    D  + +   C +C + + N RN+  H+R +HT 
Sbjct:   334 PFTCTCKQCGKSF---SQKPKLDVHIRDHTREKAYTCKQCGKSFYNTRNLTVHMR-IHTG 389

Query:   215 VRKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGH 274
              R Y C +CGK      +L  H +I H G          C  CG  +     L+ H+  H
Sbjct:   390 ERPYTCQQCGKSFHKTGNLTVHLRI-HTGERPYT-----CQQCGKSFQTTGNLTVHMRIH 443

Query:   275 TGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKN 334
             TG   + C  C K Y+  ++L++H ++TH    G     F C  C K F +K+ L+ H  
Sbjct:   444 TGEKPYSCPQCGKSYSQNSNLEVH-MRTH---NGG--RTFVCTQCGKRFVKKQNLDLHMR 497

Query:   335 WAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL--RGKLKEHM 385
                G+K + C  CG     K +LK HMI HTGE+ + C  CGK       L+ HM
Sbjct:   498 IHTGEKPYTCTECGKSFPYKSTLKHHMIVHTGEKPFACAQCGKSFTCNANLRNHM 552

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-110914-6 si:dkey-77p23.3 "si:dkey-77p23.3" [Danio rerio (taxid:7955)]

 Score = 469 (170.2 bits), Expect = 6.8e-44, P = 6.8e-44
 Identities = 117/351 (33%), Positives = 159/351 (45%)

Query:    43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
             TC  C KS+   ++ + H+R +H +    TC  C+K+F +   F  HM R H G      
Sbjct:    30 TCEQCGKSFGQKQSFKAHMR-IHTREKPYTCQQCEKSFYHAGHFAAHM-RIHTG-----E 82

Query:   103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK--V 160
             K F C  C   FS K  L  H+  HTG K Y C  C K++S +++ KTH  +H  E+   
Sbjct:    83 KPFSCKQCGKSFSQKPNLDVHMRVHTGEKPYTCEQCGKSFSQKQSFKTHMRIHTGERPYT 142

Query:   161 IKSSKKEFIIDTG-DCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYG 219
              +   K F      D  +           T C +C + +    N+  H+R V+T  + Y 
Sbjct:   143 CQQCGKSFRHARNLDVHMRIHTGEKPYTCTDCKQCRKSFSKKLNLIAHMR-VYTREKPYT 201

Query:   220 CDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPN 279
             C++CGK L  +  L  H +I H G          C  CG  +P+K TL+ H+  HTG   
Sbjct:   202 CEQCGKSLGKKQDLYIHMRI-HTGEKPYT-----CTECGKSFPHKNTLNHHMRTHTGEKP 255

Query:   280 HICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHG 338
               C  C K +    SLK H +  H   TG   EK F C  C K F +   LN+H     G
Sbjct:   256 FTCDQCGKSFTTKFSLKNH-MMNH---TG---EKPFTCTQCGKSFSQSSHLNRHMRIHTG 308

Query:   339 DKFHLCKVCGAKIK--GSLKQHMITHTGERKYCCHICGKKLR--GKLKEHM 385
             +K   C  CG       SL QHM  HTGE+ Y C  CGK       L +HM
Sbjct:   309 EKPFTCTQCGKSFNCSSSLIQHMRIHTGEKPYTCTQCGKSFSQSSSLNQHM 359

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-070424-49 zgc:162972 "zgc:162972" [Danio rerio (taxid:7955)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 116/355 (32%), Positives = 161/355 (45%)

Query:    43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
             TCP C+K +    ++  HL+ +H      TC  C K FR K + + HM R H G      
Sbjct:    88 TCPECDKCFTMKHSLESHLK-IHTGEKPFTCPDCGKKFRLKQSLEGHM-RIHTG-----E 140

Query:   103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK--V 160
             K + C  C   F  K +L  H++ HTG K Y C  C K++  +K L+ H   H  EK   
Sbjct:   141 KPYTCQNCGKSFREKQILDTHLTIHTGEKPYSCPECGKSFRVKKCLENHIKTHTGEKPYT 200

Query:   161 IKSSKKEFIIDTGDCTLDE-WNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYG 219
              +   K F I      L+         +   CP+C R +R  ++++ H+R +HT  + + 
Sbjct:   201 CQECGKSFAIKQN---LERHMRIHTGEKPYSCPECGRSFRVKQDLKIHVR-IHTGEKPFS 256

Query:   220 CDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPN 279
             C +CGK       L +H +I H G          C +CG  +  K  L  H+  HTG   
Sbjct:   257 CQQCGKSFTENKKLESHMRI-HTGEKPFV-----CSHCGKNFRGKQNLESHMRLHTGSKP 310

Query:   280 HICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHG 338
             + C  C K Y    SL IH I+TH   TG   EK F CD C K F  +  L  H     G
Sbjct:   311 YTCPQCGKSYNQQKSLDIH-IRTH---TG---EKPFACDQCGKSFTHQSNLKGHIRIHTG 363

Query:   339 DKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKK--LRGKLKEHM-LNT 388
             +K   C  CG     K  L++H   H+GE+ Y C  C K   L+  L  HM L+T
Sbjct:   364 EKPFTCPQCGKSFIEKTKLERHKKIHSGEKPYDCQHCKKSFTLKQSLDIHMKLHT 418

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-110913-39 si:dkey-202n8.1 "si:dkey-202n8.1" [Danio rerio (taxid:7955)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 114/350 (32%), Positives = 162/350 (46%)

Query:    43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
             TC  C KS+   ++ + H+R +H +    TC +C K+F +   F  HM R H G      
Sbjct:    62 TCEQCGKSFGQKQSFKAHMR-IHTRERLYTCQLCGKSFYHAGHFAAHM-RIHTG-----E 114

Query:   103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK--V 160
             K F C  C   FS K  L  H+  HTG K Y C  C K++S +++ K H  +H  E+   
Sbjct:   115 KPFSCKQCGKSFSQKPNLDVHMRVHTGEKPYTCEQCGKSFSQKRSFKAHMRIHTGERPYT 174

Query:   161 IKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGC 220
              +   K F     +  + +       +   C +C +++    N+  H+R VHT  + Y C
Sbjct:   175 CQQCGKSFC-HARNLEVHK-RIHTGEKPFSCKQCRKNFSTKLNLIAHMR-VHTREKPYTC 231

Query:   221 DECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPNH 280
             ++CGK L  +  L  H +I H G          C  CG  +P+K TL+ H+  HTG    
Sbjct:   232 EQCGKSLGKKQDLYIHMRI-HTGEKPYT-----CTECGKSFPHKNTLNHHMRTHTGEKPF 285

Query:   281 ICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKH-KNWAHGD 339
              C  C K +    SLK H +  H   TG  +  F CD C K    K  + +H K  +  D
Sbjct:   286 ACAQCGKSFTTKFSLKNH-MNGH---TGTIV--FTCDQCGKSLTRKDTIKQHMKTHSRED 339

Query:   340 KFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGKKL--RGKLKEHM 385
             +F  C+ CG   K K SL  HM  H GE  + C  CGK L  + KL  HM
Sbjct:   340 RFRCCE-CGKGFKSKRSLNTHMKLHNGENPFNCTQCGKSLANKSKLTIHM 388

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-120214-30 si:ch1073-127d16.1 "si:ch1073-127d16.1" [Danio rerio (taxid:7955)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 113/351 (32%), Positives = 158/351 (45%)

Query:    43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
             TCP C+K +    ++  HL+ +H      TC  C K FR K +   H+ R H G      
Sbjct:    83 TCPECDKCFTMKHSLETHLK-IHTGEKPFTCPDCGKKFRLKQSLDGHL-RIHTG-----E 135

Query:   103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK--V 160
             K + C  C   F  K +L  H++ HTG K Y C  C K++  +  L+ H  +H  EK   
Sbjct:   136 KPYTCQVCGRSFREKQILDKHLTIHTGEKPYSCPECGKSFRVKNCLENHIKIHTGEKPYT 195

Query:   161 IKSSKKEFIIDTGDCTLDEW-NDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYG 219
              +   K F   T    L+         +   CP+C R +R  ++++ HLR +HT  + + 
Sbjct:   196 CQECGKSF---TEKQNLERHIRIHTGEKPFACPECGRSFRVKQDLKIHLR-IHTGEKPFS 251

Query:   220 CDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPN 279
             C +CGK       L  H +I H G          C +CG  +  K  L  H+  HTG   
Sbjct:   252 CQQCGKSFSENKKLENHMRI-HTGEKPFV-----CSHCGKNFRGKQNLESHMRLHTGNQP 305

Query:   280 HICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHG 338
             + C  C K Y    SL+IH I+TH   TG   EK F CD C K F ++  L  H     G
Sbjct:   306 YTCPQCGKSYNQQKSLQIH-IRTH---TG---EKPFACDQCGKSFTQQSTLKGHIKIHTG 358

Query:   339 DKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKK--LRGKLKEHM 385
             +K   C  CG     K  L++H   H+GE+ Y C  C K   L+  L  HM
Sbjct:   359 EKPFTCPQCGKSFIEKTKLERHKKIHSGEKAYTCQHCKKSFTLKQSLDIHM 409

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110914-166 si:ch73-266f23.2 "si:ch73-266f23.2" [Danio rerio (taxid:7955)]

 Score = 460 (167.0 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 113/348 (32%), Positives = 154/348 (44%)

Query:    44 CPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSK 103
             C  C KS+    N  KH+R  H +     CT C K+F  K   + HM R H G      K
Sbjct:   458 CDECGKSFTRKGNFEKHMR-THTREKPYWCTECGKSFSQKHNLEVHM-RIHTG-----EK 510

Query:   104 HFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKS 163
              F C  C  +F     L  HI+ HTG K Y C  C K+++ +K  +TH  +H  EK    
Sbjct:   511 PFPCQQCGKRFRQIQNLKLHITIHTGEKPYACPHCPKSFNQKKKCETHMTIHTGEKPFAC 570

Query:   164 SKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDEC 223
                   +   D         ++ +   CP C + +  P+ ++ H+R  HT  + Y C +C
Sbjct:   571 QHCGRCLANKDLLNKHIKIHMEDKPFTCPPCGKSFTQPQLLKFHMR-THTGEKPYTCSQC 629

Query:   224 GKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPNHICK 283
             GK    ++ LN H +I H G          C  CG  +     L  H   H+G     C 
Sbjct:   630 GKSFTQKNGLNYHMRI-HSGEKPFT-----CAQCGKSFIYNTALLRHRKTHSGEKPFTCG 683

Query:   284 ICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFH 342
              C K +    SLK H I +H   TG   EK FKCDLC K +  K  LN+H    + DK +
Sbjct:   684 QCGKSFTKDYSLKYHLI-SH---TG---EKPFKCDLCGKRYLRKDNLNQHMRIHNNDKSY 736

Query:   343 LCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKLRGK--LKEHML 386
             +C  CG     K  L QH   HT E+ + CH CGK    K  L  H++
Sbjct:   737 VCDQCGKGFTRKDYLSQHTRIHTKEKSFKCHQCGKSFAQKSALNAHVI 784

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-060531-126 si:dkey-261j4.5 "si:dkey-261j4.5" [Danio rerio (taxid:7955)]

 Score = 457 (165.9 bits), Expect = 3.0e-42, P = 3.0e-42
 Identities = 106/341 (31%), Positives = 164/341 (48%)

Query:    40 KTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKI 99
             K   C  C K +P  ++++ HL  +H K +  TC  C K+F+    F+ HM   H   K 
Sbjct:   510 KPYRCDQCGKCFPYKQSLKLHLE-IHAKGNPYTCDECGKSFKTCLQFRSHMT-LHPEYK- 566

Query:   100 SVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
                  ++C+ C   +  +  L  H+  HTG K +KC  C K++  R  L++H ++H + K
Sbjct:   567 ----PYKCDQCEKSYGREDHLQRHMKLHTGEKPHKCEHCGKSFPMRDLLRSHLMVHREVK 622

Query:   160 VIKSSK--KEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRK 217
                  +  K F +    C  +  N     R   C +C + +   +++  H+R  H   + 
Sbjct:   623 PYTCDQCGKGFTLKK--CYNEHMNIHTGERPYTCDQCGKGFPYEQSLNLHMR-FHRGEKP 679

Query:   218 YGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGI 277
             + CD+CG+    + + N H KI H G          CD CG  + +  +L  H++ HTG 
Sbjct:   680 FTCDQCGQSFSQKGAYNIHMKI-HTGEKPYT-----CDQCGMSFRHGSSLKLHMTHHTGE 733

Query:   278 -PNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWA 336
              P H C  C+K Y+ A  LK H +KTH          +KCD C K F  K++L +H    
Sbjct:   734 KPFH-CDQCDKCYSTALFLKNH-MKTHKSI-------YKCDRCGKSFTRKERLKEHTRIH 784

Query:   337 HGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGK 375
              G+K   C  CG +     +LKQHM+THTGE+ + C  CGK
Sbjct:   785 TGEKPFACAQCGKRFGCSSNLKQHMMTHTGEKPHKCDQCGK 825

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110914-121 si:ch211-202h22.10 "si:ch211-202h22.10" [Danio rerio (taxid:7955)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 103/350 (29%), Positives = 160/350 (45%)

Query:    40 KTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKI 99
             K  +CP C K +     ++ H+R +H      TC  C K+  +K + + HM R H G   
Sbjct:    58 KPFSCPQCGKGFTQQGQIKTHMR-IHTGEKPFTCPQCDKSVTSKQSLKSHM-RIHTG--- 112

Query:   100 SVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
                K F C  C   FS    L  H+ +HTGLK + C  C K Y  +++L++H  +H  EK
Sbjct:   113 --EKPFTCPECGMIFSQLGYLKRHVRTHTGLKPFSCTQCGKRYKVKQSLESHMRVHTGEK 170

Query:   160 VIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYG 219
                  +         C     +  I+ +   C  C   + + +++++H+  +H   + Y 
Sbjct:   171 PFACPQCGKGFTAKQCLKSHMSVHIEEKPFNCSLCEMSFTHQQSLKRHML-IHVGEKPYV 229

Query:   220 CDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPN 279
             C +CGK    + SL +H +I H G          C  CG  +  K  L  H+  HTG+  
Sbjct:   230 CRQCGKSFSVKQSLESHIRI-HTGEKPFA-----CAECGKGFAVKQNLESHMRVHTGVKP 283

Query:   280 HICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGD 339
               C  C K +    SL+ H +  H   TG     F C +CDK F  K KL  H     G+
Sbjct:   284 FSCPQCGKRFTVKQSLESH-MTIH---TGE--RPFTCSMCDKTFTVKHKLEYHMRNHTGE 337

Query:   340 KFHLCKVCGAK--IKGSLKQHMITHTGERKYCCHICGKK--LRGKLKEHM 385
             K ++C  CG    ++  L++H+  HTGE+ + C  C K+  ++  LK HM
Sbjct:   338 KPYICPQCGNSYALRNHLERHVRIHTGEKPFSCSKCAKRFTMKQSLKSHM 387

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110913-165 si:dkeyp-4f2.4 "si:dkeyp-4f2.4" [Danio rerio (taxid:7955)]

 Score = 454 (164.9 bits), Expect = 3.5e-42, P = 3.5e-42
 Identities = 108/349 (30%), Positives = 162/349 (46%)

Query:    43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
             TC  C KS+   +N++ H+R +H      TCT C K+FR K+TF  H +R H G      
Sbjct:   344 TCTQCGKSFAKKQNLKIHMR-IHTGEKPFTCTECGKSFRCKSTFNIH-KRTHTG-----E 396

Query:   103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
             K + C  C   F NKS  ++H+  HTG K Y+C  C K++  +  L  H   H  EK+  
Sbjct:   397 KPYRCTECGKSFPNKSTFNNHMRIHTGEKPYRCTECGKSFIRKSTLNYHVRTHTGEKLFA 456

Query:   163 SSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDE 222
               +      T    ++  N      V  C +C +      ++++H++  H+  R + C E
Sbjct:   457 CVQCGKSFTTKLSLMNHMNGHTGTIVFTCDQCGKSLTRKDSIKRHMK-THSGER-FRCSE 514

Query:   223 CGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPNHIC 282
             CGK      S+++ KK+              C  CG  +    +L  HI  HTG    IC
Sbjct:   515 CGKDFNWYTSISSSKKVP------TREKPFTCTQCGKSFSKSSSLYRHIKIHTGEKPFIC 568

Query:   283 KICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDKF 341
              +C K ++ ++SL +H ++ H   TG   EK F C  C K F +   L  H     G+K 
Sbjct:   569 TLCGKSFSQSSSLNLH-MRIH---TG---EKPFTCTQCGKSFNQSSNLYLHMRIHTGEKP 621

Query:   342 HLCKVCGAKIK--GSLKQHMITHTGERKYCCHICGKKL--RGKLKEHML 386
               C +CG   +   SL  HM  HTGE+ + C +CGK       L +HM+
Sbjct:   622 FTCTLCGKSFRQSSSLNLHMRIHTGEKPFTCTLCGKNFIHSSHLNQHMM 670

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110913-163 si:ch211-209p16.2 "si:ch211-209p16.2" [Danio rerio (taxid:7955)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 112/352 (31%), Positives = 155/352 (44%)

Query:    43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
             TC  C KS      ++ H+R +H++    TCT C K F   +   +HM R H G K+   
Sbjct:    67 TCSQCGKSLANKSKLKIHMR-IHNREKLFTCTQCGKNFNQSSNLNQHM-RIHTGEKL--- 121

Query:   103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
               F C  C   FSN + L+ H+  HTG K + C  C K++S    L  H  +H  EK   
Sbjct:   122 --FTCTQCGKSFSNSTNLNQHMRIHTGEKPFTCTQCGKSFSQSSNLNHHMRIHTGEKPFT 179

Query:   163 SSK--KEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGC 220
              S+  K F   +    L       ++  T C +C + +     +  H+R  HT  + + C
Sbjct:   180 CSQCGKSFS-QSSSLNLHMMIHTGEKPFT-CTQCGKSFSQSSILNIHMRN-HTGEKPFTC 236

Query:   221 DECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPNH 280
              +CGK      SLN H +I H G          C  CG  + N   L+ H+  HTG    
Sbjct:   237 LQCGKSFSQSTSLNQHMRI-HTGEKLFT-----CTQCGKSFSNSANLNQHMRIHTGEKPF 290

Query:   281 ICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGD 339
              C  C K ++ +++L IH ++ H   TG   EK F C  C K F +   LN H     G+
Sbjct:   291 TCTQCGKSFSQSSNLNIH-MRIH---TG---EKPFTCSQCGKSFSQSPYLNHHMRIHTGE 343

Query:   340 KFHLCKVCGAKIK--GSLKQHMITHTGERKYCCHICGKKLR--GKLKEHMLN 387
             K   C  CG       SL  HM  HTGE+ + C  CGK       L  HM N
Sbjct:   344 KPFTCSQCGKSFSQSSSLNLHMRIHTGEKPFTCTQCGKSFSQSSNLNIHMRN 395

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	388
KOG1074|consensus	958		99.97
KOG1074|consensus	958		99.97
KOG2462|consensus	279		99.96
KOG2462|consensus	279		99.95
KOG3608|consensus	467		99.95
KOG3608|consensus	467		99.94
KOG3623|consensus	1007		99.94
KOG3576|consensus	267		99.76
KOG3576|consensus	267		99.67
KOG3623|consensus	1007		99.57
PLN03086	567	PRLI-interacting factor K; Provisional	99.37
PLN03086	567	PRLI-interacting factor K; Provisional	99.29
PHA00733	128	hypothetical protein	99.13
KOG3993|consensus	500		99.11
PHA00733	128	hypothetical protein	99.05
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.0
PHA02768	55	hypothetical protein; Provisional	98.97
KOG3993|consensus	500		98.9
PHA02768	55	hypothetical protein; Provisional	98.87
PHA00616	44	hypothetical protein	98.69
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.68
PHA00732	79	hypothetical protein	98.6
PHA00616	44	hypothetical protein	98.52
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.52
PHA00732	79	hypothetical protein	98.43
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.36
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.1
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.95
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.82
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.82
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.71
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.68
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.64
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.63
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.47
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.45
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.32
PRK04860	160	hypothetical protein; Provisional	97.05
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.04
KOG2231|consensus	669		97.03
smart00355	26	ZnF_C2H2 zinc finger.	97.0
KOG2231|consensus	669		96.91
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.89
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.88
smart00355	26	ZnF_C2H2 zinc finger.	96.86
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.55
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.54
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.42
PRK04860	160	hypothetical protein; Provisional	96.34
KOG2482|consensus	423		96.33
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.96
KOG1146|consensus	1406		95.9
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.88
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.8
KOG2785|consensus	390		95.62
KOG2785|consensus	390		95.39
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.3
KOG4173|consensus	253		94.96
KOG4173|consensus	253		94.9
COG5048	467	FOG: Zn-finger [General function prediction only]	94.86
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.73
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.98
KOG2893|consensus	341		93.95
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	93.56
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.35
KOG2482|consensus	423		93.2
COG5048	467	FOG: Zn-finger [General function prediction only]	93.16
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	92.26
KOG2893|consensus	341		92.02
KOG1146|consensus	1406		92.01
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	91.71
COG4049	65	Uncharacterized protein containing archaeal-type C	90.31
COG4049	65	Uncharacterized protein containing archaeal-type C	90.27
PF00301	47	Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubred	89.37
PF01352	41	KRAB: KRAB box; InterPro: IPR001909 The Krueppel-a	87.5
cd00730	50	rubredoxin Rubredoxin; nonheme iron binding domain	87.15
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	87.01
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.31
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	85.77
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	85.67
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	84.04
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	83.74
PHA00626	59	hypothetical protein	83.63
COG1592	166	Rubrerythrin [Energy production and conversion]	83.48
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	83.36
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	81.98
KOG2186|consensus	276		81.65
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	81.45
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	80.93
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	80.44
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.24

>KOG1074|consensus

Probab=99.97  E-value=3e-31  Score=245.71  Aligned_cols=240  Identities=24%  Similarity=0.402  Sum_probs=173.2

Q ss_pred             ccccccchhccCCchHHHHHHhhcCCCCCccCCccccccCChHHHHHHHhhhcccccccccCceeeecCCCCCccccchh
Q psy4688         104 HFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDF  183 (388)
Q Consensus       104 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (388)
                      |.+|-+|-++.+-++.|+.|.++|+|++||+|.+|++.|+++.+|+.||-+|......                      
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~----------------------  662 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPA----------------------  662 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccc----------------------
Confidence            5789999999999999999999999999999999999999999999999998654322                      


Q ss_pred             hccCCCccc---ccccccCCchHHHHhHHhhhCC-CC------------cccCCCCcccCCChhHHHHHHHHhccCCc--
Q psy4688         184 IKRRVTVCP---KCNRDYRNPRNMRKHLRRVHTS-VR------------KYGCDECGKMLKSRDSLNTHKKIQHEGKK--  245 (388)
Q Consensus       184 ~~~~~~~C~---~C~~~f~~~~~l~~H~~~~h~~-~~------------~~~C~~C~~~f~~~~~l~~H~~~~~~~~~--  245 (388)
                        +..+.|+   +|-+.|.+.-.|..|++ .|.+ ..            .-+|..|.+.|.....+..++..+-....  
T Consensus       663 --R~q~ScP~~~ic~~kftn~V~lpQhIr-iH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~  739 (958)
T KOG1074|consen  663 --RVQFSCPSTFICQKKFTNAVTLPQHIR-IHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEP  739 (958)
T ss_pred             --cccccCCchhhhcccccccccccceEE-eecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCC
Confidence              2346799   99999999999999974 5652 11            24699999999999999988877632111  


Q ss_pred             ------------ccccCcccccccCCcCCChhHHHHHHh-----------------------hcCCCCCc-ccccccccc
Q psy4688         246 ------------VKVKYEYECDYCGAKYPNKYTLSDHIS-----------------------GHTGIPNH-ICKICNKGY  289 (388)
Q Consensus       246 ------------~~~~~~~~C~~C~~~f~~~~~L~~H~~-----------------------~H~~~~~~-~C~~C~k~f  289 (388)
                                  ....-+..+..|+..+.....+..+-.                       .++++++. .+.+++-.-
T Consensus       740 ~~~~~~~t~t~~~~~tp~~~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~  819 (958)
T KOG1074|consen  740 DEQMDERTETEELDVTPPPPENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEIL  819 (958)
T ss_pred             cccccccccccccccCCCccccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCC
Confidence                        111225678889998887766655421                       23345555 555555433


Q ss_pred             ccccccc----hh-------------hccccc-------cc------------cCCCCCccccCCCcccccChhhHHhHH
Q psy4688         290 ACAASLK----IH-------------NIKTHL-------QF------------TGVPIEKFKCDLCDKEFFEKKKLNKHK  333 (388)
Q Consensus       290 ~~~~~L~----~H-------------~~~~H~-------~~------------~~~~~~~~~C~~C~k~F~~~~~L~~H~  333 (388)
                      ...-...    .-             +...+.       +.            .........|.+||+.|.+.++|+.|+
T Consensus       820 ~~~v~~~pvl~~~~~~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~  899 (958)
T KOG1074|consen  820 APSVNMDPVLWNQETSMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHM  899 (958)
T ss_pred             ccccccCchhhcccccccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhh
Confidence            2111000    00             000000       00            000012378999999999999999999


Q ss_pred             hhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCc
Q psy4688         334 NWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKY  368 (388)
Q Consensus       334 ~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~  368 (388)
                      ++|.|+|||.|.+|++.|  +++|+.||.+|....|+
T Consensus       900 rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~  936 (958)
T KOG1074|consen  900 RTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPP  936 (958)
T ss_pred             hcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCC
Confidence            999999999999999998  78899999999876654

>KOG1074|consensus

Probab=99.97  E-value=4.5e-31  Score=244.57  Aligned_cols=198  Identities=27%  Similarity=0.532  Sum_probs=146.4

Q ss_pred             CCcccccccccCCchHHHHhHHhhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCccccc---ccCCcCCCh
Q psy4688         188 VTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECD---YCGAKYPNK  264 (388)
Q Consensus       188 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~---~C~~~f~~~  264 (388)
                      +..|-+|-++..-++.|+.|+ +.|+|+|||+|.+||+.|.++.+|+.|+-+|-.....+  ..+.|+   +|-+.|.+.
T Consensus       605 PNqCiiC~rVlSC~saLqmHy-rtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R--~q~ScP~~~ic~~kftn~  681 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHY-RTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPAR--VQFSCPSTFICQKKFTNA  681 (958)
T ss_pred             ccceeeeeecccchhhhhhhh-hcccCcCccccccccchhccccchhhcccccccCcccc--ccccCCchhhhccccccc
Confidence            346999999999999999997 67999999999999999999999999999886554433  479999   999999999


Q ss_pred             hHHHHHHhhcCCC-C------------Cccccccccccccccccchhhccc-------ccccc---CCC----CCccccC
Q psy4688         265 YTLSDHISGHTGI-P------------NHICKICNKGYACAASLKIHNIKT-------HLQFT---GVP----IEKFKCD  317 (388)
Q Consensus       265 ~~L~~H~~~H~~~-~------------~~~C~~C~k~f~~~~~L~~H~~~~-------H~~~~---~~~----~~~~~C~  317 (388)
                      ..|..|+++|.+. .            .-+|..|.+.|.....+..++...       +.+..   ..+    ..+..+.
T Consensus       682 V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~  761 (958)
T KOG1074|consen  682 VTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPEN  761 (958)
T ss_pred             ccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCcccc
Confidence            9999999999832 1            247999999998888777774332       11000   000    0123333


Q ss_pred             CCcccccChhhHHhHHhhh-------------------------------------------------------------
Q psy4688         318 LCDKEFFEKKKLNKHKNWA-------------------------------------------------------------  336 (388)
Q Consensus       318 ~C~k~F~~~~~L~~H~~~h-------------------------------------------------------------  336 (388)
                      .|+..+.....+..+-..+                                                             
T Consensus       762 ~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~  841 (958)
T KOG1074|consen  762 SCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGL  841 (958)
T ss_pred             ccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccc
Confidence            3433333222111110000                                                             


Q ss_pred             -----------------------cC--------C--CcccCCcchhhH--HhHHHHHHHHhcCCCCccccccchhh--Hh
Q psy4688         337 -----------------------HG--------D--KFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL--RG  379 (388)
Q Consensus       337 -----------------------h~--------~--~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k~f--~~  379 (388)
                                             ..        .  ..+.|.+||+.|  .+.|..||++|+|++||.|.+|++.|  ++
T Consensus       842 ~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrg  921 (958)
T KOG1074|consen  842 ATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRG  921 (958)
T ss_pred             ccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhh
Confidence                                   00        0  127799999999  45699999999999999999999999  78


Q ss_pred             hhhhhhccC
Q psy4688         380 KLKEHMLNT  388 (388)
Q Consensus       380 ~l~~H~~~~  388 (388)
                      +||+||+.|
T Consensus       922 nLKvHMgtH  930 (958)
T KOG1074|consen  922 NLKVHMGTH  930 (958)
T ss_pred             hhhhhhccc
Confidence            899999987

>KOG2462|consensus

Probab=99.96  E-value=1.9e-30  Score=212.85  Aligned_cols=130  Identities=33%  Similarity=0.648  Sum_probs=78.0

Q ss_pred             cccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccc
Q psy4688         217 KYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLK  296 (388)
Q Consensus       217 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~  296 (388)
                      .|+|+.||+.+.+.+.|.+|.++|-....   ++.+.|.+|||.|.+...|..|+++|+                     
T Consensus       130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s---~ka~~C~~C~K~YvSmpALkMHirTH~---------------------  185 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSSNLSRHKQTHRSLDS---KKAFSCKYCGKVYVSMPALKMHIRTHT---------------------  185 (279)
T ss_pred             ceeccccccccccccccchhhcccccccc---cccccCCCCCceeeehHHHhhHhhccC---------------------
Confidence            45555555555555555555555543221   223555555555555555555555554                     


Q ss_pred             hhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccccc
Q psy4688         297 IHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICG  374 (388)
Q Consensus       297 ~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~  374 (388)
                                     -+++|.+|||.|.+.-.|+-|+|+|+|||||.|++|+++|  +++|+.||++|++.++|+|+.|+
T Consensus       186 ---------------l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~  250 (279)
T KOG2462|consen  186 ---------------LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCG  250 (279)
T ss_pred             ---------------CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchh
Confidence                           2456666666666666666677777777777777777776  56677777777777777777777


Q ss_pred             hhhH--hhhhhhh
Q psy4688         375 KKLR--GKLKEHM  385 (388)
Q Consensus       375 k~f~--~~l~~H~  385 (388)
                      |+|.  +-|.+|.
T Consensus       251 KsFsl~SyLnKH~  263 (279)
T KOG2462|consen  251 KSFALKSYLNKHS  263 (279)
T ss_pred             hHHHHHHHHHHhh
Confidence            7773  3366664

>KOG2462|consensus

Probab=99.95  E-value=1e-28  Score=202.64  Aligned_cols=137  Identities=32%  Similarity=0.672  Sum_probs=111.9

Q ss_pred             hccCCCcccccccccCCchHHHHhHHhhhC---CCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCc
Q psy4688         184 IKRRVTVCPKCNRDYRNPRNMRKHLRRVHT---SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAK  260 (388)
Q Consensus       184 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~  260 (388)
                      .....+.|+.|++.+.+..+|.+| +..|-   ..+.+.|++||+.|.+..+|..|+++|..        +++|.+|||.
T Consensus       126 ~~~~r~~c~eCgk~ysT~snLsrH-kQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l--------~c~C~iCGKa  196 (279)
T KOG2462|consen  126 AKHPRYKCPECGKSYSTSSNLSRH-KQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTL--------PCECGICGKA  196 (279)
T ss_pred             ccCCceeccccccccccccccchh-hcccccccccccccCCCCCceeeehHHHhhHhhccCC--------Cccccccccc
Confidence            455678999999999999999999 45664   35679999999999999999999999973        6899999999


Q ss_pred             CCChhHHHHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhh
Q psy4688         261 YPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNW  335 (388)
Q Consensus       261 f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~  335 (388)
                      |...+.|+.|+|+|+||+||.|+.|+|.|+.+++|+.| +.+|.     ..++|+|+.|+|.|..++.|.+|...
T Consensus       197 FSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAH-mQTHS-----~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  197 FSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAH-MQTHS-----DVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ccchHHhhcccccccCCCCccCCcccchhcchHHHHHH-HHhhc-----CCccccCcchhhHHHHHHHHHHhhhh
Confidence            99999999999999999988888777777777777766 33332     24567777777777777777777653

>KOG3608|consensus

Probab=99.95  E-value=9.3e-28  Score=201.83  Aligned_cols=231  Identities=23%  Similarity=0.464  Sum_probs=195.0

Q ss_pred             ccc--ccchhcccChhhHHHHHHhhccCCCc-----CC-C-Cccccc--cchhccCCchHHHHHHhhcCCCCCccCCccc
Q psy4688          71 TTC--TMCKKTFRNKATFQKHMQRAHVGLKI-----SV-S-KHFECN--YCHAKFSNKSLLSDHISSHTGLKNYKCHVCD  139 (388)
Q Consensus        71 ~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~-----~~-~-~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~  139 (388)
                      |.|  ..|+..|.+...+..|+..+-.....     .. . ..+.|.  .|-+.|.+++.|++|++.|++++...|+.|+
T Consensus       135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg  214 (467)
T KOG3608|consen  135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCG  214 (467)
T ss_pred             hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHH
Confidence            456  45999999999999998644332111     11 1 235565  5999999999999999999999999999999


Q ss_pred             cccCChHHHHHHHhhhcccccccccCceeeecCCCCCccccchhhccCCCcccccccccCCchHHHHhHHhhhCCCCccc
Q psy4688         140 KAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYG  219 (388)
Q Consensus       140 ~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  219 (388)
                      ..|.++..|-.|.+.-...                          ...+|.|..|.|.|.+...|..|+.+ |.  .-|+
T Consensus       215 ~~F~~~tkl~DH~rRqt~l--------------------------~~n~fqC~~C~KrFaTeklL~~Hv~r-Hv--n~yk  265 (467)
T KOG3608|consen  215 ELFRTKTKLFDHLRRQTEL--------------------------NTNSFQCAQCFKRFATEKLLKSHVVR-HV--NCYK  265 (467)
T ss_pred             HHhccccHHHHHHHhhhhh--------------------------cCCchHHHHHHHHHhHHHHHHHHHHH-hh--hccc
Confidence            9999999999998754321                          22468899999999999999999754 44  3599


Q ss_pred             CCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCccccc--cccccccccccch
Q psy4688         220 CDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKI  297 (388)
Q Consensus       220 C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~  297 (388)
                      |+.|+.+....++|..|++..|...     +||+|+.|++.|.+.+.|.+|..+|+ +..|.|+.  |..+|.+..+|++
T Consensus       266 CplCdmtc~~~ssL~~H~r~rHs~d-----kpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~  339 (467)
T KOG3608|consen  266 CPLCDMTCSSASSLTTHIRYRHSKD-----KPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRR  339 (467)
T ss_pred             ccccccCCCChHHHHHHHHhhhccC-----CCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHH
Confidence            9999999999999999999988654     38999999999999999999999999 67899988  9999999999999


Q ss_pred             hhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         298 HNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       298 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      |.+.+|   .+....+|.|-.|++.|++-.+|..|++..|+-
T Consensus       340 H~~evh---Eg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f  378 (467)
T KOG3608|consen  340 HFLEVH---EGNNPILYACHCCDRFFTSGKSLSAHLMKKHGF  378 (467)
T ss_pred             HHHHhc---cCCCCCceeeecchhhhccchhHHHHHHHhhcc
Confidence            988888   344457899999999999999999999888763

>KOG3608|consensus

Probab=99.94  E-value=7.8e-27  Score=196.31  Aligned_cols=241  Identities=23%  Similarity=0.496  Sum_probs=202.7

Q ss_pred             cCCC--CCcCCcCCCcHHHHHHHHhhcc------------C-CCccccc--cchhcccChhhHHHHHHhhccCCCcCCCC
Q psy4688          41 TKTC--PICNKSYPGARNMRKHLRLVHD------------K-NSTTTCT--MCKKTFRNKATFQKHMQRAHVGLKISVSK  103 (388)
Q Consensus        41 ~~~C--~~C~~~f~~~~~l~~H~~~~h~------------~-~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  103 (388)
                      .|.|  +.|+..|.+...+..|+.. |.            + ...+.|.  .|-+.|.+++.|++|++ .|.+     ++
T Consensus       134 ~f~C~WedCe~~F~s~~ef~dHV~~-H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r-~Hs~-----eK  206 (467)
T KOG3608|consen  134 NFRCGWEDCEREFVSIVEFQDHVVK-HALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIR-THSN-----EK  206 (467)
T ss_pred             hhccChhhcCCcccCHHHHHHHHHH-hhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHH-hcCC-----Ce
Confidence            4667  5799999999999999854 42            1 1346675  59999999999999986 5544     57


Q ss_pred             ccccccchhccCCchHHHHHHhhcC--CCCCccCCccccccCChHHHHHHHhhhcccccccccCceeeecCCCCCccccc
Q psy4688         104 HFECNYCHAKFSNKSLLSDHISSHT--GLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWN  181 (388)
Q Consensus       104 ~~~C~~C~~~f~~~~~L~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (388)
                      ...|+.||..|.++..|-.|++.-+  ...+|.|..|.+.|.+...|..|+..|-.                        
T Consensus       207 vvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn------------------------  262 (467)
T KOG3608|consen  207 VVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN------------------------  262 (467)
T ss_pred             EEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh------------------------
Confidence            8899999999999999999987644  45789999999999999999999998853                        


Q ss_pred             hhhccCCCcccccccccCCchHHHHhHHhhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccc--cCC
Q psy4688         182 DFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGA  259 (388)
Q Consensus       182 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~--C~~  259 (388)
                            -|+|+.|+......++|..||+..|..++||+|+.|++.|.+.+.|.+|..+|...       .|.|+.  |..
T Consensus       263 ------~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~-------~y~C~h~~C~~  329 (467)
T KOG3608|consen  263 ------CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKT-------VYQCEHPDCHY  329 (467)
T ss_pred             ------cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcccc-------ceecCCCCCcH
Confidence                  46799999999999999999999999999999999999999999999999988732       499998  999


Q ss_pred             cCCChhHHHHHHhhcC-C--CCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccC
Q psy4688         260 KYPNKYTLSDHISGHT-G--IPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFE  325 (388)
Q Consensus       260 ~f~~~~~L~~H~~~H~-~--~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~  325 (388)
                      +|++...|.+|++.+. |  +.+|.|..|++.|++-.+|..|.++.|.-....+-+.|.=..|.-.|.+
T Consensus       330 s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~mR  398 (467)
T KOG3608|consen  330 SVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFMR  398 (467)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccCceee
Confidence            9999999999998765 4  4579999999999999999999998886544444445555555555543

>KOG3623|consensus

Probab=99.94  E-value=1.7e-26  Score=210.93  Aligned_cols=113  Identities=27%  Similarity=0.656  Sum_probs=99.1

Q ss_pred             cCCCCCcCCcCCCcHHHHHHHHhhccC-CCccccccchhcccChhhHHHHHHhhccCCCc-------CCCCccccccchh
Q psy4688          41 TKTCPICNKSYPGARNMRKHLRLVHDK-NSTTTCTMCKKTFRNKATFQKHMQRAHVGLKI-------SVSKHFECNYCHA  112 (388)
Q Consensus        41 ~~~C~~C~~~f~~~~~l~~H~~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~-------~~~~~~~C~~C~~  112 (388)
                      ..+|++|.+.+.....|+.|++..|.. +..|.|.+|..+|..+..|.+||..+-.+...       ...+.|+|..||+
T Consensus       210 lltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgK  289 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGK  289 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccch
Confidence            479999999999999999999887754 45699999999999999999999866544221       1236799999999


Q ss_pred             ccCCchHHHHHHhhcCCCCCccCCccccccCChHHHHHHHh
Q psy4688         113 KFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL  153 (388)
Q Consensus       113 ~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  153 (388)
                      .|..+-.|+.|+++|.|++||.|+.|++.|+....+..||-
T Consensus       290 AFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  290 AFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             hhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence            99999999999999999999999999999999999988874

>KOG3576|consensus

Probab=99.76  E-value=1.2e-19  Score=141.55  Aligned_cols=122  Identities=24%  Similarity=0.424  Sum_probs=106.6

Q ss_pred             CCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCcccccccccccccc
Q psy4688         214 SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAA  293 (388)
Q Consensus       214 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~  293 (388)
                      +...|.|.+|+|.|.....|++|++-|...+      .|.|..||+.|.....|++|+++|+|.+||+|..|++.|+..-
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vk------r~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrc  187 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVK------RHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRC  187 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHH------HHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhc
Confidence            3456999999999999999999999988665      5899999999999999999999999999999999999999999


Q ss_pred             ccchhhcccccccc-----CCCCCccccCCCcccccChhhHHhHHhhhcCCCc
Q psy4688         294 SLKIHNIKTHLQFT-----GVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKF  341 (388)
Q Consensus       294 ~L~~H~~~~H~~~~-----~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~  341 (388)
                      +|..|..++|....     ....+.|.|+.||.+-.....+..|++.||..-|
T Consensus       188 sleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  188 SLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             cHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            99999888885422     1224569999999999999999999999987654

>KOG3576|consensus

Probab=99.67  E-value=1.1e-17  Score=130.65  Aligned_cols=111  Identities=31%  Similarity=0.655  Sum_probs=97.8

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHH
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLN  330 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~  330 (388)
                      .|.|.+|+|.|.-+..|.+|++-|...+.|-|..||++|.....|++| .++|   +  .++||+|..|+|.|...-.|.
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh-~rth---t--gvrpykc~~c~kaftqrcsle  190 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRH-TRTH---T--GVRPYKCSLCEKAFTQRCSLE  190 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhh-hccc---c--CccccchhhhhHHHHhhccHH
Confidence            599999999999999999999999999999999999999999999999 4555   3  478999999999999999999


Q ss_pred             hHHhhhcCC-----------CcccCCcchhhH--HhHHHHHHHHhcCCCC
Q psy4688         331 KHKNWAHGD-----------KFHLCKVCGAKI--KGSLKQHMITHTGERK  367 (388)
Q Consensus       331 ~H~~~hh~~-----------~~~~C~~C~~~f--~~~L~~H~~~H~~~~~  367 (388)
                      .|++..||.           +.|.|+.||.+-  ...+..|+..|...-|
T Consensus       191 shl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  191 SHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             HHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            999999984           679999999865  3457788888765544

>KOG3623|consensus

Probab=99.57  E-value=9.4e-16  Score=141.28  Aligned_cols=112  Identities=23%  Similarity=0.576  Sum_probs=99.3

Q ss_pred             CCcccccccccCCchHHHHhHHhhhC-CCCcccCCCCcccCCChhHHHHHHHHhccCCccc-------ccCcccccccCC
Q psy4688         188 VTVCPKCNRDYRNPRNMRKHLRRVHT-SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVK-------VKYEYECDYCGA  259 (388)
Q Consensus       188 ~~~C~~C~~~f~~~~~l~~H~~~~h~-~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~-------~~~~~~C~~C~~  259 (388)
                      ...|++|.+.+.....|+.|++..|. .+..|.|.+|..+|..+..|.+|+.+|..+....       ..+.|+|..|||
T Consensus       210 lltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgK  289 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGK  289 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccch
Confidence            45799999999999999999987775 4567999999999999999999999987654321       234699999999


Q ss_pred             cCCChhHHHHHHhhcCCCCCccccccccccccccccchhh
Q psy4688         260 KYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHN  299 (388)
Q Consensus       260 ~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~  299 (388)
                      .|..+..|+.|+|+|+|++||.|+-|+|+|.-..+...|+
T Consensus       290 AFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHm  329 (1007)
T KOG3623|consen  290 AFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHM  329 (1007)
T ss_pred             hhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccc
Confidence            9999999999999999999999999999999999998884

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.37  E-value=5.6e-13  Score=124.07  Aligned_cols=138  Identities=21%  Similarity=0.500  Sum_probs=93.8

Q ss_pred             ccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccc--cCCcCCChhHHHHHHhhcCCCCCcccccccccccccccc
Q psy4688         218 YGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASL  295 (388)
Q Consensus       218 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L  295 (388)
                      -.|+.|...... ..|..|...-...       .-.|+.  ||..|. +..|..|         +.|+.|++.|. ...|
T Consensus       408 V~C~NC~~~i~l-~~l~lHe~~C~r~-------~V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~-~s~L  468 (567)
T PLN03086        408 VECRNCKHYIPS-RSIALHEAYCSRH-------NVVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQ-QGEM  468 (567)
T ss_pred             EECCCCCCccch-hHHHHHHhhCCCc-------ceeCCcccccceee-ccccccC---------ccCCCCCCccc-hHHH
Confidence            467777765543 3455676433211       235763  887773 3344444         37888888885 5667


Q ss_pred             chhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhHH------------hHHHHHHHHhc
Q psy4688         296 KIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIK------------GSLKQHMITHT  363 (388)
Q Consensus       296 ~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f~------------~~L~~H~~~H~  363 (388)
                      ..|....|        .++.|+ ||+.+ .+..|..|+.+|.+.+++.|+.|++.|.            +.|..|+.+. 
T Consensus       469 ekH~~~~H--------kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-  537 (567)
T PLN03086        469 EKHMKVFH--------EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-  537 (567)
T ss_pred             HHHHHhcC--------CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-
Confidence            77754433        468888 88654 5688888888888888888888888773            2588888875 


Q ss_pred             CCCCccccccchhhH-hhhhhhh
Q psy4688         364 GERKYCCHICGKKLR-GKLKEHM  385 (388)
Q Consensus       364 ~~~~~~C~~C~k~f~-~~l~~H~  385 (388)
                      |.+++.|..||+.|. .-|..|+
T Consensus       538 G~rt~~C~~Cgk~Vrlrdm~~H~  560 (567)
T PLN03086        538 GSRTAPCDSCGRSVMLKEMDIHQ  560 (567)
T ss_pred             CCcceEccccCCeeeehhHHHHH
Confidence            888888888888884 4477775

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.29  E-value=4.1e-12  Score=118.43  Aligned_cols=142  Identities=19%  Similarity=0.477  Sum_probs=108.0

Q ss_pred             CcccccccccCCchHHHHhHHhhhCCCCcccCCC--CcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhH
Q psy4688         189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDE--CGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYT  266 (388)
Q Consensus       189 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~  266 (388)
                      ..|+.|..... ..+|..|..  +-.-..-.|+.  ||..|. +..+..|               +.|+.|++.|. ...
T Consensus       408 V~C~NC~~~i~-l~~l~lHe~--~C~r~~V~Cp~~~Cg~v~~-r~el~~H---------------~~C~~Cgk~f~-~s~  467 (567)
T PLN03086        408 VECRNCKHYIP-SRSIALHEA--YCSRHNVVCPHDGCGIVLR-VEEAKNH---------------VHCEKCGQAFQ-QGE  467 (567)
T ss_pred             EECCCCCCccc-hhHHHHHHh--hCCCcceeCCcccccceee-ccccccC---------------ccCCCCCCccc-hHH
Confidence            36999988775 456668852  33334567884  999884 3334443               57999999996 678


Q ss_pred             HHHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCccccc----------ChhhHHhHHhhh
Q psy4688         267 LSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFF----------EKKKLNKHKNWA  336 (388)
Q Consensus       267 L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~----------~~~~L~~H~~~h  336 (388)
                      |..|+..|+  .++.|+ ||+.+ ....|..|. ..     ..+.+++.|+.|++.|.          ..+.|..|... 
T Consensus       468 LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~-~t-----hCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~-  536 (567)
T PLN03086        468 MEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQ-AS-----TCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-  536 (567)
T ss_pred             HHHHHHhcC--CCccCC-CCCCc-chhHHHhhh-hc-----cCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh-
Confidence            999999985  789999 99755 567888883 33     34578999999999995          24589999987 


Q ss_pred             cCCCcccCCcchhhH-HhHHHHHHHH
Q psy4688         337 HGDKFHLCKVCGAKI-KGSLKQHMIT  361 (388)
Q Consensus       337 h~~~~~~C~~C~~~f-~~~L~~H~~~  361 (388)
                      .|.+++.|..||+.+ ...|..|+..
T Consensus       537 CG~rt~~C~~Cgk~Vrlrdm~~H~~~  562 (567)
T PLN03086        537 CGSRTAPCDSCGRSVMLKEMDIHQIA  562 (567)
T ss_pred             cCCcceEccccCCeeeehhHHHHHHH
Confidence            599999999999998 4568888763

>PHA00733 hypothetical protein

Probab=99.13  E-value=5e-11  Score=90.66  Aligned_cols=80  Identities=19%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             cccccccCCcCCChhHHHHH--Hh---hcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccC
Q psy4688         251 EYECDYCGAKYPNKYTLSDH--IS---GHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFE  325 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H--~~---~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~  325 (388)
                      ++.|.+|++.|.+...|..+  ++   .+.+.+||.|+.||+.|.+...|..|.. .|       ..+|.|+.|++.|..
T Consensus        40 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r-~h-------~~~~~C~~CgK~F~~  111 (128)
T PHA00733         40 RLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIR-YT-------EHSKVCPVCGKEFRN  111 (128)
T ss_pred             hHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHh-cC-------CcCccCCCCCCccCC
Confidence            57788887777776666555  11   2233566777777777777777766633 22       124677777777777


Q ss_pred             hhhHHhHHhhhcC
Q psy4688         326 KKKLNKHKNWAHG  338 (388)
Q Consensus       326 ~~~L~~H~~~hh~  338 (388)
                      ...|..|+...|+
T Consensus       112 ~~sL~~H~~~~h~  124 (128)
T PHA00733        112 TDSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHHHHhcC
Confidence            7777777766665

>KOG3993|consensus

Probab=99.11  E-value=2.5e-11  Score=105.86  Aligned_cols=201  Identities=19%  Similarity=0.324  Sum_probs=120.7

Q ss_pred             CccccccchhccCCchHHHHHHhhcCCCCCccCCccccccCChHHHHHHHhhhcccccccc--cCc-eeeecCCCCCccc
Q psy4688         103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKS--SKK-EFIIDTGDCTLDE  179 (388)
Q Consensus       103 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~--~~~-~~~~~~~~~~~~~  179 (388)
                      ..|.|..|...|.+...|.+|.-.-.-...|+|+.|+++|+...+|..|.++|........  ... ...+++++     
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~ra-----  340 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRA-----  340 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhh-----
Confidence            3599999999999999999996433333469999999999999999999999975433221  000 00011000     


Q ss_pred             cchhhccCCCcccccccccCCchHHHHhHH--hhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCccccc--------
Q psy4688         180 WNDFIKRRVTVCPKCNRDYRNPRNMRKHLR--RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVK--------  249 (388)
Q Consensus       180 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~--~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~--------  249 (388)
                                              +.+-..  .....+..|.|.+|++.|.+...|+.|+.+|+.....+..        
T Consensus       341 ------------------------e~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~  396 (500)
T KOG3993|consen  341 ------------------------EVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSR  396 (500)
T ss_pred             ------------------------hhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhh
Confidence                                    000000  0012233577777777777777777777777654333211        


Q ss_pred             ---CcccccccCCcCCChhHHHHHHhhcCC-CCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccC
Q psy4688         250 ---YEYECDYCGAKYPNKYTLSDHISGHTG-IPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFE  325 (388)
Q Consensus       250 ---~~~~C~~C~~~f~~~~~L~~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~  325 (388)
                         .-+-|+.|+-.+.....-..+...+.+ .....|++||-.+.++..--.+..      .+.....|.|.+|.-.|.+
T Consensus       397 ~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~r------lg~~~q~f~~ky~~atfys  470 (500)
T KOG3993|consen  397 VIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGR------LGIAEQGFTCKYCPATFYS  470 (500)
T ss_pred             cccccccccccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCcccc------ccchhhccccccchHhhhc
Confidence               113455555555443333333322222 123457778877766555444421      1223456889999999999


Q ss_pred             hhhHHhHHhhhcC
Q psy4688         326 KKKLNKHKNWAHG  338 (388)
Q Consensus       326 ~~~L~~H~~~hh~  338 (388)
                      ...|.+|+...|.
T Consensus       471 s~~ltrhin~~Hp  483 (500)
T KOG3993|consen  471 SPGLTRHINKCHP  483 (500)
T ss_pred             CcchHhHhhhcCh
Confidence            9999999876553

>PHA00733 hypothetical protein

Probab=99.05  E-value=2.9e-10  Score=86.49  Aligned_cols=98  Identities=15%  Similarity=0.291  Sum_probs=70.6

Q ss_pred             cHHHHHHHHhhccCCCccccccchhcccChhhHHHH--HHhhccCCCcCCCCccccccchhccCCchHHHHHHhhcCCCC
Q psy4688          54 ARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKH--MQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK  131 (388)
Q Consensus        54 ~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H--~~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  131 (388)
                      ...|.++-.+ -...+++.|.+|++.|.....|..+  +.++ .  .....++|.|+.|++.|.+...|..|++.|  +.
T Consensus        25 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-~--~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~   98 (128)
T PHA00733         25 LEELKRYHSL-TPEQKRLIRAVVKTLIYNPQLLDESSYLYKL-L--TSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EH   98 (128)
T ss_pred             HHHhhhhhcC-ChhhhhHHHHHHhhhccChhhhcchHHHHhh-c--ccCCCCCccCCCCCCcCCCHHHHHHHHhcC--Cc
Confidence            4445444221 2335678888888888887777766  2221 1  112357899999999999999999998876  35


Q ss_pred             CccCCccccccCChHHHHHHHhhhcc
Q psy4688         132 NYKCHVCDKAYSCRKALKTHTLLHEQ  157 (388)
Q Consensus       132 ~~~C~~C~~~f~~~~~l~~H~~~h~~  157 (388)
                      +|.|+.|++.|.....|..|+...++
T Consensus        99 ~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         99 SKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhcC
Confidence            78999999999999999999876654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.00  E-value=1.6e-10  Score=61.38  Aligned_cols=25  Identities=52%  Similarity=1.042  Sum_probs=22.7

Q ss_pred             HHHHHHHHhcCCCCccccccchhhH
Q psy4688         354 SLKQHMITHTGERKYCCHICGKKLR  378 (388)
Q Consensus       354 ~L~~H~~~H~~~~~~~C~~C~k~f~  378 (388)
                      +|.+||++|+|++||.|++|+++|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            5889999999999999999999984

...

>PHA02768 hypothetical protein; Provisional

Probab=98.97  E-value=3.4e-10  Score=70.25  Aligned_cols=44  Identities=23%  Similarity=0.455  Sum_probs=37.1

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLK  296 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~  296 (388)
                      .|+|+.||+.|.....|..|+++|+  ++|+|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            4789999999999899999998888  5888888888888777764

>KOG3993|consensus

Probab=98.90  E-value=2e-10  Score=100.36  Aligned_cols=110  Identities=22%  Similarity=0.442  Sum_probs=68.6

Q ss_pred             cCCCCCcCCcCCCcHHHHHHH--HhhccCCCccccccchhcccChhhHHHHHHhhccCCCcC--CCCccccccchhccCC
Q psy4688          41 TKTCPICNKSYPGARNMRKHL--RLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKIS--VSKHFECNYCHAKFSN  116 (388)
Q Consensus        41 ~~~C~~C~~~f~~~~~l~~H~--~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~--~~~~~~C~~C~~~f~~  116 (388)
                      .|.|..|...|.+...|.+|.  +++|   ..|+|+.|+|+|.-..+|..|.+.|-......  ...+=+     +.-.+
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~---vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k-----~~~~~  338 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVH---VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPK-----QAVET  338 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEE---eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChh-----hhhhh
Confidence            599999999999999999994  3334   35999999999999999999976543221111  001100     00000


Q ss_pred             chHHHHHHhh--cCCCCCccCCccccccCChHHHHHHHhhhccc
Q psy4688         117 KSLLSDHISS--HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQE  158 (388)
Q Consensus       117 ~~~L~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  158 (388)
                      ....+.=.+.  ...+.-|.|.+|++.|.+...|+.|+.+|+..
T Consensus       339 rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  339 RAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             hhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence            0000000000  02234688888888888888888888887654

>PHA02768 hypothetical protein; Provisional

Probab=98.87  E-value=1e-09  Score=68.14  Aligned_cols=43  Identities=19%  Similarity=0.434  Sum_probs=36.6

Q ss_pred             ccccccchhccCCchHHHHHHhhcCCCCCccCCccccccCChHHH
Q psy4688         104 HFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKAL  148 (388)
Q Consensus       104 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l  148 (388)
                      .|.|+.||+.|+..+.|..|+++|+  ++|+|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            3789999999999999999999987  688999999988876655

>PHA00616 hypothetical protein

Probab=98.69  E-value=6.8e-09  Score=61.19  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=25.0

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      ||+|+.||+.|..++.|.+|++.|||++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            4677777777777777777777777777776653

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.68  E-value=1e-08  Score=54.40  Aligned_cols=25  Identities=32%  Similarity=0.663  Sum_probs=22.1

Q ss_pred             HHHHHHhhcCCCCCccccccccccc
Q psy4688         266 TLSDHISGHTGIPNHICKICNKGYA  290 (388)
Q Consensus       266 ~L~~H~~~H~~~~~~~C~~C~k~f~  290 (388)
                      +|..|+++|+|++||.|++|+++|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4788999999999999999999886

...

>PHA00732 hypothetical protein

Probab=98.60  E-value=1.6e-08  Score=69.47  Aligned_cols=46  Identities=28%  Similarity=0.606  Sum_probs=24.3

Q ss_pred             cccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhHHhHHHHHHHHh
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITH  362 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f~~~L~~H~~~H  362 (388)
                      |.|+.||+.|.+...|+.|++.+|.  ++.|+.||+.|. .|..|++++
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~-~l~~H~~~~   47 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR-RLNQHFYSQ   47 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC-Chhhhhccc
Confidence            5556666666666666666553222  235666665554 355555443

>PHA00616 hypothetical protein

Probab=98.52  E-value=7.2e-08  Score=56.90  Aligned_cols=32  Identities=19%  Similarity=0.407  Sum_probs=29.7

Q ss_pred             cccCCcchhhH--HhHHHHHHHHhcCCCCccccc
Q psy4688         341 FHLCKVCGAKI--KGSLKQHMITHTGERKYCCHI  372 (388)
Q Consensus       341 ~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~  372 (388)
                      ||+|+.||+.|  +++|..|++.|+|++|+.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            68999999999  678999999999999999975

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.52  E-value=1.9e-07  Score=59.57  Aligned_cols=50  Identities=26%  Similarity=0.595  Sum_probs=35.8

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCC--CcccCCcchhhHHhHHHHHHHHhc
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGD--KFHLCKVCGAKIKGSLKQHMITHT  363 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~--~~~~C~~C~~~f~~~L~~H~~~H~  363 (388)
                      .|.||+|++ ..+...|..|....|..  +.+.|++|...+..+|..||..+.
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVTDNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhhhHHHHHHHHhc
Confidence            477888888 45567788887766542  457788888777777888877654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.43  E-value=1.8e-07  Score=64.31  Aligned_cols=21  Identities=24%  Similarity=0.513  Sum_probs=10.0

Q ss_pred             ccCCCCcccCCChhHHHHHHH
Q psy4688         218 YGCDECGKMLKSRDSLNTHKK  238 (388)
Q Consensus       218 ~~C~~C~~~f~~~~~l~~H~~  238 (388)
                      |.|++||+.|.+..+|..|++
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r   22 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHAR   22 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhh
Confidence            444444444444444444444

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.36  E-value=7.8e-07  Score=56.79  Aligned_cols=51  Identities=22%  Similarity=0.520  Sum_probs=33.5

Q ss_pred             cCCCCCcCCcCCCcHHHHHHHHhhccCC-CccccccchhcccChhhHHHHHHhhc
Q psy4688          41 TKTCPICNKSYPGARNMRKHLRLVHDKN-STTTCTMCKKTFRNKATFQKHMQRAH   94 (388)
Q Consensus        41 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~h   94 (388)
                      .|+||+|++ ..+...|..|+...|..+ ..+.|++|...+.  .+|..|+...|
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            477777777 445667777776666554 3577777776544  36777776554

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.10  E-value=1.8e-06  Score=44.44  Aligned_cols=23  Identities=35%  Similarity=0.803  Sum_probs=19.8

Q ss_pred             cccCCCcccccChhhHHhHHhhh
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~h  336 (388)
                      |+|++|++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            67999999999999999998873

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.95  E-value=5.5e-06  Score=43.09  Aligned_cols=24  Identities=38%  Similarity=0.805  Sum_probs=19.3

Q ss_pred             cccCCCcccccChhhHHhHHhhhc
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNWAH  337 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~hh  337 (388)
                      |.|++|++.|.+...|+.|++++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            679999999999999999998875

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.82  E-value=1.1e-05  Score=41.39  Aligned_cols=20  Identities=35%  Similarity=0.786  Sum_probs=9.1

Q ss_pred             cCCCCcccCCChhHHHHHHH
Q psy4688         219 GCDECGKMLKSRDSLNTHKK  238 (388)
Q Consensus       219 ~C~~C~~~f~~~~~l~~H~~  238 (388)
                      .|++|++.|.++..|..|++
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    2 KCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHh
Confidence            34444444444444444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.82  E-value=5.8e-06  Score=70.19  Aligned_cols=58  Identities=26%  Similarity=0.552  Sum_probs=35.0

Q ss_pred             CCCccccc--cccccccccccchhhcccccc-------------ccCCCCCccccCCCcccccChhhHHhHHh
Q psy4688         277 IPNHICKI--CNKGYACAASLKIHNIKTHLQ-------------FTGVPIEKFKCDLCDKEFFEKKKLNKHKN  334 (388)
Q Consensus       277 ~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~-------------~~~~~~~~~~C~~C~k~F~~~~~L~~H~~  334 (388)
                      ++||+|++  |+|.|+....|+.|++.-|..             .-....+||.|++|+|+|+....|+.|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            36677765  677777777777665544411             01112366777777777777777777654

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.71  E-value=1.8e-05  Score=42.43  Aligned_cols=26  Identities=35%  Similarity=0.612  Sum_probs=22.0

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      +|+|+.|++.|.+...|..|++.|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            57899999999999999999987753

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.68  E-value=2.3e-05  Score=57.58  Aligned_cols=24  Identities=29%  Similarity=0.776  Sum_probs=12.8

Q ss_pred             CccCCccccccCChHHHHHHHhhh
Q psy4688         132 NYKCHVCDKAYSCRKALKTHTLLH  155 (388)
Q Consensus       132 ~~~C~~C~~~f~~~~~l~~H~~~h  155 (388)
                      .+.|..|++.|.+...|..|++.+
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCc
Confidence            455555555555555555555543

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.64  E-value=2.6e-05  Score=57.28  Aligned_cols=72  Identities=19%  Similarity=0.468  Sum_probs=17.8

Q ss_pred             ccccccccCCchHHHHhHHhhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHH
Q psy4688         191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDH  270 (388)
Q Consensus       191 C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H  270 (388)
                      |..|+..|.+...|..||...|.-..+     ....+.....+..+.+..       +...+.|.+|++.|.+...|..|
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~~-------~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRKK-------VKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             ccccccccccccccccccccccccccc-----cccccccccccccccccc-------cCCCCCCCccCCCCcCHHHHHHH
Confidence            777888888888888887766653322     111122333333333221       11147788888888888888888


Q ss_pred             Hhhc
Q psy4688         271 ISGH  274 (388)
Q Consensus       271 ~~~H  274 (388)
                      |+.+
T Consensus        70 m~~~   73 (100)
T PF12756_consen   70 MRSK   73 (100)
T ss_dssp             HHHT
T ss_pred             HcCc
Confidence            8764

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.63  E-value=3.8e-05  Score=39.78  Aligned_cols=22  Identities=32%  Similarity=0.750  Sum_probs=10.2

Q ss_pred             cCCCCcccCCChhHHHHHHHHh
Q psy4688         219 GCDECGKMLKSRDSLNTHKKIQ  240 (388)
Q Consensus       219 ~C~~C~~~f~~~~~l~~H~~~~  240 (388)
                      .|++|++.|.+...|..|+.++
T Consensus         2 ~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    2 QCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             E-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCcCCCCcCCcHHHHHHHHHhh
Confidence            4555555555555555555444

...

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.47  E-value=0.00014  Score=43.96  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKF  341 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~  341 (388)
                      .+.|-.|++|+..+.+..+|++|+...|+.+|
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            35688999999999999999999999998876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.45  E-value=5.6e-05  Score=40.47  Aligned_cols=23  Identities=43%  Similarity=0.927  Sum_probs=10.8

Q ss_pred             ccCCCCcccCCChhHHHHHHHHh
Q psy4688         218 YGCDECGKMLKSRDSLNTHKKIQ  240 (388)
Q Consensus       218 ~~C~~C~~~f~~~~~l~~H~~~~  240 (388)
                      |.|+.|++.|.+...|..|++.|
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCccCCccCChhHHHHHhHHh
Confidence            44444444444444444444433

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.32  E-value=9e-05  Score=63.16  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=20.2

Q ss_pred             CCCCccccccccccccccccchhh
Q psy4688         276 GIPNHICKICNKGYACAASLKIHN  299 (388)
Q Consensus       276 ~~~~~~C~~C~k~f~~~~~L~~H~  299 (388)
                      ..+||.|++|+|+|+....|+.|.
T Consensus       395 ~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         395 KDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             cCCceeccccchhhccCccceecc
Confidence            357899999999999988888883

>PRK04860 hypothetical protein; Provisional

Probab=97.05  E-value=0.00028  Score=55.88  Aligned_cols=34  Identities=32%  Similarity=0.677  Sum_probs=18.1

Q ss_pred             ccCCcchhhHHhHHHHHHHHhcCCCCccccccchhh
Q psy4688         342 HLCKVCGAKIKGSLKQHMITHTGERKYCCHICGKKL  377 (388)
Q Consensus       342 ~~C~~C~~~f~~~L~~H~~~H~~~~~~~C~~C~k~f  377 (388)
                      |.|. |+. ...++++|+++|+|+++|.|..|+..|
T Consensus       120 Y~C~-C~~-~~~~~rrH~ri~~g~~~YrC~~C~~~l  153 (160)
T PRK04860        120 YRCK-CQE-HQLTVRRHNRVVRGEAVYRCRRCGETL  153 (160)
T ss_pred             EEcC-CCC-eeCHHHHHHHHhcCCccEECCCCCcee
Confidence            4444 444 333455555555555555555555554

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.04  E-value=0.00045  Score=35.68  Aligned_cols=24  Identities=29%  Similarity=0.565  Sum_probs=17.8

Q ss_pred             cccCCCcccccChhhHHhHHhhhcC
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      |+|+.|+.... +..|.+|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            67888888887 8888888888774

>KOG2231|consensus

Probab=97.03  E-value=0.00075  Score=64.78  Aligned_cols=147  Identities=27%  Similarity=0.467  Sum_probs=90.4

Q ss_pred             CcccccccccCCchHHHHhHHhhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCC---------
Q psy4688         189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGA---------  259 (388)
Q Consensus       189 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~---------  259 (388)
                      ..|.+|++.|....             ..-.|..| -.|.+...|+.|+...|..        +.|.+|-.         
T Consensus       100 ~~C~~C~~~~~~~~-------------~~~~~~~c-~~~~s~~~Lk~H~~~~H~~--------~~c~lC~~~~kif~~e~  157 (669)
T KOG2231|consen  100 HSCHICDRRFRALY-------------NKKECLHC-TEFKSVENLKNHMRDQHKL--------HLCSLCLQNLKIFINER  157 (669)
T ss_pred             hhcCccccchhhhc-------------ccCCCccc-cchhHHHHHHHHHHHhhhh--------hccccccccceeeeeee
Confidence            56888877763210             11357777 6777888888888766642        44544422         


Q ss_pred             cCCChhHHHHHHhhcCC-CC----CccccccccccccccccchhhccccccccCCCCCccccCCC------cccccChhh
Q psy4688         260 KYPNKYTLSDHISGHTG-IP----NHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLC------DKEFFEKKK  328 (388)
Q Consensus       260 ~f~~~~~L~~H~~~H~~-~~----~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C------~k~F~~~~~  328 (388)
                      ...++..|..|+..-.. +.    --.|..|...|-....|..|....|          |.|-.|      +..|.....
T Consensus       158 k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h----------~~chfC~~~~~~neyy~~~~d  227 (669)
T KOG2231|consen  158 KLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH----------EFCHFCDYKTGQNEYYNDYDD  227 (669)
T ss_pred             ehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccce----------eheeecCcccccchhcccchH
Confidence            22345677777653211 11    2358888888888888888866555          445555      456778888


Q ss_pred             HHhHHhhhcCCCcccCC--cchh-hH------HhHHHHHHHHhcCCCCcccc
Q psy4688         329 LNKHKNWAHGDKFHLCK--VCGA-KI------KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       329 L~~H~~~hh~~~~~~C~--~C~~-~f------~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |..|.+..|    |.|+  .|.. .|      ...|+.|.+.+.-++-|.|.
T Consensus       228 Le~HfR~~H----flCE~~~C~~~~f~~~~~~ei~lk~~~~~~~~e~~~~~~  275 (669)
T KOG2231|consen  228 LEEHFRKGH----FLCEEEFCRTKKFYVAFELEIELKAHNRFIQHEKCYICR  275 (669)
T ss_pred             HHHHhhhcC----ccccccccccceeeehhHHHHHHHhhccccchheeccCC
Confidence            999988766    6777  6642 23      22355555444445555553

>smart00355 ZnF_C2H2 zinc finger

Probab=97.00  E-value=0.00059  Score=35.81  Aligned_cols=23  Identities=30%  Similarity=0.611  Sum_probs=17.7

Q ss_pred             cccCCCcccccChhhHHhHHhhh
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~h  336 (388)
                      |.|+.|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            46888888888888888887754

>KOG2231|consensus

Probab=96.91  E-value=0.0019  Score=62.10  Aligned_cols=103  Identities=24%  Similarity=0.513  Sum_probs=65.2

Q ss_pred             ccccccccCCchHHHHhHHhhhCCCCcccCCCCc---------ccCCChhHHHHHHHHhcc-CCcccccCcccccccCCc
Q psy4688         191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECG---------KMLKSRDSLNTHKKIQHE-GKKVKVKYEYECDYCGAK  260 (388)
Q Consensus       191 C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~---------~~f~~~~~l~~H~~~~~~-~~~~~~~~~~~C~~C~~~  260 (388)
                      |..| ..|.+...|+.|+...|..   +.|.+|-         ...-+...|..|+..--. ++..++  --.|..|...
T Consensus       118 ~~~c-~~~~s~~~Lk~H~~~~H~~---~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rG--hp~C~~C~~~  191 (669)
T KOG2231|consen  118 CLHC-TEFKSVENLKNHMRDQHKL---HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRG--HPLCKFCHER  191 (669)
T ss_pred             Cccc-cchhHHHHHHHHHHHhhhh---hccccccccceeeeeeeehehHHHHHHHHhcCCCccccccC--Cccchhhhhh
Confidence            7777 7777888888887766643   4455442         222356677777765433 222111  2368888888


Q ss_pred             CCChhHHHHHHhhcCCCCCcccccc------ccccccccccchhhcccc
Q psy4688         261 YPNKYTLSDHISGHTGIPNHICKIC------NKGYACAASLKIHNIKTH  303 (388)
Q Consensus       261 f~~~~~L~~H~~~H~~~~~~~C~~C------~k~f~~~~~L~~H~~~~H  303 (388)
                      |.....|..|++.++    |.|..|      +.-|.....|..|-...|
T Consensus       192 fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  192 FLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             hccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            888888888887654    345555      445666677887766666

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.89  E-value=0.0015  Score=56.49  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=15.4

Q ss_pred             ccccc--chhcccChhhHHHHHHhhc
Q psy4688          71 TTCTM--CKKTFRNKATFQKHMQRAH   94 (388)
Q Consensus        71 ~~C~~--C~~~f~~~~~l~~H~~~~h   94 (388)
                      |.|+.  |..+......|..|.+..|
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H  177 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQH  177 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhc
Confidence            56654  6666666667777766555

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.88  E-value=0.0006  Score=35.61  Aligned_cols=23  Identities=35%  Similarity=0.779  Sum_probs=19.2

Q ss_pred             cccCCCcccccChhhHHhHHhhh
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~h  336 (388)
                      |.|++|++.|.+...|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            57889999999999999988753

>smart00355 ZnF_C2H2 zinc finger

Probab=96.86  E-value=0.00092  Score=35.05  Aligned_cols=21  Identities=29%  Similarity=0.727  Sum_probs=9.7

Q ss_pred             cccccCCcCCChhHHHHHHhh
Q psy4688         253 ECDYCGAKYPNKYTLSDHISG  273 (388)
Q Consensus       253 ~C~~C~~~f~~~~~L~~H~~~  273 (388)
                      .|+.|++.|.+...|..|++.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHH
Confidence            344444444444444444443

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.55  E-value=0.001  Score=35.49  Aligned_cols=22  Identities=41%  Similarity=0.801  Sum_probs=18.3

Q ss_pred             cccCCCcccccChhhHHhHHhh
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNW  335 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~  335 (388)
                      |.|++|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.54  E-value=0.0014  Score=39.72  Aligned_cols=33  Identities=27%  Similarity=0.507  Sum_probs=19.2

Q ss_pred             hCCCCcccCCCCcccCCChhHHHHHHHHhccCC
Q psy4688         212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGK  244 (388)
Q Consensus       212 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  244 (388)
                      +.++.|-.|++|+..+.+..+|++|+.+.|..+
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            445567777777777777777777777766543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.42  E-value=0.0016  Score=33.90  Aligned_cols=17  Identities=35%  Similarity=0.905  Sum_probs=6.4

Q ss_pred             cccchhccCCchHHHHH
Q psy4688         107 CNYCHAKFSNKSLLSDH  123 (388)
Q Consensus       107 C~~C~~~f~~~~~L~~H  123 (388)
                      |++|++.|.+...|..|
T Consensus         3 C~~C~~~f~s~~~~~~H   19 (25)
T PF12874_consen    3 CDICNKSFSSENSLRQH   19 (25)
T ss_dssp             ETTTTEEESSHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHH
Confidence            33333333333333333

>PRK04860 hypothetical protein; Provisional

Probab=96.34  E-value=0.002  Score=51.04  Aligned_cols=40  Identities=20%  Similarity=0.500  Sum_probs=34.0

Q ss_pred             CcccccccCCcCCChhHHHHHHhhcCCCCCcccccccccccccc
Q psy4688         250 YEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAA  293 (388)
Q Consensus       250 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~  293 (388)
                      .+|.|. |+.   ....+.+|.++|+++++|.|..|+..|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            479998 987   6778899999999999999999999886543

>KOG2482|consensus

Probab=96.33  E-value=0.026  Score=49.17  Aligned_cols=77  Identities=22%  Similarity=0.288  Sum_probs=44.5

Q ss_pred             CcccccccccCCchHHHHhHHhhhCCCC-cccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHH
Q psy4688         189 TVCPKCNRDYRNPRNMRKHLRRVHTSVR-KYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTL  267 (388)
Q Consensus       189 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~-~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L  267 (388)
                      .+|-.|.....+...|..||..+|.-+- +-+ ..=+-.|-.+-.+..=++..        .+.-.|-.|.-.|.....|
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~-sd~~Ln~YqrvrviNyiRkq--------~~~~~c~~cd~~F~~e~~l  350 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQ-SDYSLNFYQRVRVINYIRKQ--------KKKSRCAECDLSFWKEPGL  350 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhc-cccccchhhhhhHHHHHHHH--------hhccccccccccccCcchh
Confidence            5788888888888889999888874210 000 00011111121121111111        1124588888999999999


Q ss_pred             HHHHhhc
Q psy4688         268 SDHISGH  274 (388)
Q Consensus       268 ~~H~~~H  274 (388)
                      ..||..+
T Consensus       351 ~~hm~e~  357 (423)
T KOG2482|consen  351 LIHMVED  357 (423)
T ss_pred             hhhcccc
Confidence            9998654

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.96  E-value=0.0031  Score=54.69  Aligned_cols=19  Identities=21%  Similarity=0.532  Sum_probs=9.4

Q ss_pred             ccccCCcCCChhHHHHHHh
Q psy4688         254 CDYCGAKYPNKYTLSDHIS  272 (388)
Q Consensus       254 C~~C~~~f~~~~~L~~H~~  272 (388)
                      |..|...|.+-..|..|++
T Consensus       223 C~FC~~~FYdDDEL~~HcR  241 (493)
T COG5236         223 CIFCKIYFYDDDELRRHCR  241 (493)
T ss_pred             hhhccceecChHHHHHHHH
Confidence            4445555554445555544

>KOG1146|consensus

Probab=95.90  E-value=0.0012  Score=67.24  Aligned_cols=189  Identities=15%  Similarity=0.185  Sum_probs=107.2

Q ss_pred             CCCCcCCcCCCcHHHHHHHHhhccCCCccccccchhcccChhhHHHHHHhhccCCCcCCCCccccccchhccCCchHHHH
Q psy4688          43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSD  122 (388)
Q Consensus        43 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~  122 (388)
                      .|.-|+..+.+...+..|+...+.-.+.+.|+.|+..|.....|..||+..|.....        .+|.. +.+...+.+
T Consensus       438 e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~--------~~c~~-gq~~~~~ar  508 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS--------AYCKA-GQNHPRLAR  508 (1406)
T ss_pred             cccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch--------hHhHh-ccccccccc
Confidence            455566667777777777777777778899999999999999999999877654210        12211 000000000


Q ss_pred             HHhhcCCCCCccCCccccccCChHHHHHHHhhhccccccc---ccCc------------eeeecCCCCCccccchhhccC
Q psy4688         123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK---SSKK------------EFIIDTGDCTLDEWNDFIKRR  187 (388)
Q Consensus       123 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~---~~~~------------~~~~~~~~~~~~~~~~~~~~~  187 (388)
                      =...-.+.++|.|..|..+++++.+|..|+..-......+   ....            ......+-.......+-....
T Consensus       509 g~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP  588 (1406)
T KOG1146|consen  509 GEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKP  588 (1406)
T ss_pred             cccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCC
Confidence            0001123467777777777777777777775321110000   0000            000000000000000112234


Q ss_pred             CCcccccccccCCchHHHHhHHhhhCCCCcccCCCCcccCCChhHHHHHHHHh
Q psy4688         188 VTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQ  240 (388)
Q Consensus       188 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  240 (388)
                      .+.|.+|+..-.-..+|+.|+...+....|..+..++-.+.....+..+.+.+
T Consensus       589 ~~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  589 SWRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             CcchhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCCCC
Confidence            56799999999999999999876666555577777777666665555554444

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.88  E-value=0.0066  Score=31.22  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=8.6

Q ss_pred             cCCCCcccCCChhHHHHHHHHh
Q psy4688         219 GCDECGKMLKSRDSLNTHKKIQ  240 (388)
Q Consensus       219 ~C~~C~~~f~~~~~l~~H~~~~  240 (388)
                      +|+.|+.... ...|.+|++.+
T Consensus         2 ~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    2 KCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             E-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCcCC-HHHHHHHHHhh
Confidence            4444444443 44444444443

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.80  E-value=0.0036  Score=33.29  Aligned_cols=22  Identities=23%  Similarity=0.693  Sum_probs=14.4

Q ss_pred             ccccccCCcCCChhHHHHHHhh
Q psy4688         252 YECDYCGAKYPNKYTLSDHISG  273 (388)
Q Consensus       252 ~~C~~C~~~f~~~~~L~~H~~~  273 (388)
                      |.|+.|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5566777777776666666654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2785|consensus

Probab=95.62  E-value=0.038  Score=49.11  Aligned_cols=57  Identities=19%  Similarity=0.266  Sum_probs=42.8

Q ss_pred             cccCCCCcccCCChhHHHHHHHHhccCCccc-----------------ccCcccccccC---CcCCChhHHHHHHhh
Q psy4688         217 KYGCDECGKMLKSRDSLNTHKKIQHEGKKVK-----------------VKYEYECDYCG---AKYPNKYTLSDHISG  273 (388)
Q Consensus       217 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~-----------------~~~~~~C~~C~---~~f~~~~~L~~H~~~  273 (388)
                      |-.|-.|++.+.+...-..||..+|+---+.                 +...|.|-.|+   +.|.+-.+.+.||..
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            4668888888888888888888877643221                 23457899998   899999999999864

>KOG2785|consensus

Probab=95.39  E-value=0.047  Score=48.55  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=43.4

Q ss_pred             CCcccccccccCCchHHHHhHHhhhCC----------------------CCcccCCCCc---ccCCChhHHHHHHHHh
Q psy4688         188 VTVCPKCNRDYRNPRNMRKHLRRVHTS----------------------VRKYGCDECG---KMLKSRDSLNTHKKIQ  240 (388)
Q Consensus       188 ~~~C~~C~~~f~~~~~l~~H~~~~h~~----------------------~~~~~C~~C~---~~f~~~~~l~~H~~~~  240 (388)
                      +..|-.|++.+.+...-..||...|.-                      ..-+.|-.|+   +.|.+..+.+.||...
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K  243 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDK  243 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhc
Confidence            467999999999999999999776642                      1236788888   9999999999999753

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.30  E-value=0.014  Score=30.31  Aligned_cols=20  Identities=30%  Similarity=0.919  Sum_probs=13.1

Q ss_pred             cccCCCcccccChhhHHhHHh
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKN  334 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~  334 (388)
                      .+|+.||+.| ..+.|.+|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            3577777777 5666666654

>KOG4173|consensus

Probab=94.96  E-value=0.0079  Score=48.27  Aligned_cols=42  Identities=17%  Similarity=0.413  Sum_probs=19.2

Q ss_pred             cccccCCchHHHHhHHhhhCCCCcccCCCCcccCCChhHHHHHHHH
Q psy4688         194 CNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI  239 (388)
Q Consensus       194 C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  239 (388)
                      |.+.|.+......|....|+    -.|..|.+.|.+..-|..|+..
T Consensus        87 c~~~~d~lD~~E~hY~~~h~----~sCs~C~r~~Pt~hLLd~HI~E  128 (253)
T KOG4173|consen   87 CCQVFDALDDYEHHYHTLHG----NSCSFCKRAFPTGHLLDAHILE  128 (253)
T ss_pred             hHHHHhhhhhHHHhhhhccc----chhHHHHHhCCchhhhhHHHHH
Confidence            44444444444444333332    2355555555555555555443

>KOG4173|consensus

Probab=94.90  E-value=0.0066  Score=48.69  Aligned_cols=113  Identities=19%  Similarity=0.396  Sum_probs=74.8

Q ss_pred             cceeeecccccCCCCCceeeeceehhHHHHHhhCCcCCCCC--cCCcCCCcHHHHHHHHhhccCCCccccccchhcccCh
Q psy4688           6 AEVFLSQNVQMSNLSGSCVVDVITADKWRALIKNKTKTCPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNK   83 (388)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~   83 (388)
                      ...|-..||+-.-+.....+++...   ...+....|.|++  |...|.+...+..|....|..    .|.+|.+.|.+.
T Consensus        47 ~pFf~~G~v~r~l~~~~V~~d~~d~---~~~~~~~~~~cqvagc~~~~d~lD~~E~hY~~~h~~----sCs~C~r~~Pt~  119 (253)
T KOG4173|consen   47 HPFFEDGDVQRHLYLQDVIMDVADV---PEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGN----SCSFCKRAFPTG  119 (253)
T ss_pred             CcchhcccHHHHHhHhhheeecccc---ccccccccccccccchHHHHhhhhhHHHhhhhcccc----hhHHHHHhCCch
Confidence            3445555666555555555554222   2244556788887  778899988888888766643    699999999999


Q ss_pred             hhHHHHHHhhccCC----CcCCCCccccc--cchhccCCchHHHHHHh
Q psy4688          84 ATFQKHMQRAHVGL----KISVSKHFECN--YCHAKFSNKSLLSDHIS  125 (388)
Q Consensus        84 ~~l~~H~~~~h~~~----~~~~~~~~~C~--~C~~~f~~~~~L~~H~~  125 (388)
                      ..|..|+...|...    ...+...|+|-  -|+..|.+...-+.|+.
T Consensus       120 hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I  167 (253)
T KOG4173|consen  120 HLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMI  167 (253)
T ss_pred             hhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHH
Confidence            99999987766421    01123457774  47777777777777754

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.86  E-value=0.0091  Score=56.60  Aligned_cols=157  Identities=16%  Similarity=0.149  Sum_probs=101.2

Q ss_pred             CcccCCCCcccCCChhHHHHHHH--HhccCCcccccCccccc--ccCCcCCChhHHHHHHhhcCCCCCcccccc--cccc
Q psy4688         216 RKYGCDECGKMLKSRDSLNTHKK--IQHEGKKVKVKYEYECD--YCGAKYPNKYTLSDHISGHTGIPNHICKIC--NKGY  289 (388)
Q Consensus       216 ~~~~C~~C~~~f~~~~~l~~H~~--~~~~~~~~~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C--~k~f  289 (388)
                      .++.|..|...|.....|..|.+  .|....    ..++.|+  .|++.|.+...+..|...|.+..++.+..-  ...+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGES----LKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKF  363 (467)
T ss_pred             cCCCCccccCCcccccccccccccccccccc----CCceeeeccCCCccccccccccCCcccccCCCccccccccCcccc
Confidence            36788888888888888888888  455441    1368888  799999888888888888888877776553  3333


Q ss_pred             ccccccchhhccccccccCCCCCccccCC--CcccccChhhHHhHHhhhcCCC--cccCCcchhhHH--hHHHHHHHHhc
Q psy4688         290 ACAASLKIHNIKTHLQFTGVPIEKFKCDL--CDKEFFEKKKLNKHKNWAHGDK--FHLCKVCGAKIK--GSLKQHMITHT  363 (388)
Q Consensus       290 ~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~~~hh~~~--~~~C~~C~~~f~--~~L~~H~~~H~  363 (388)
                      .....-..+ ..............+.+..  |-..+.+...+..|...+-..+  .+.+..|.+.+.  ..|..|++.|.
T Consensus       364 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (467)
T COG5048         364 SPLLNNEPP-QSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT  442 (467)
T ss_pred             ccccCCCCc-cchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccc
Confidence            222221101 0000000111122333333  6777788888888877776655  466778887773  34778888888


Q ss_pred             CCCCccccccchhh
Q psy4688         364 GERKYCCHICGKKL  377 (388)
Q Consensus       364 ~~~~~~C~~C~k~f  377 (388)
                      ...++.|..++...
T Consensus       443 ~~~~~~~~~~~~~~  456 (467)
T COG5048         443 NHAPLLCSILKSFR  456 (467)
T ss_pred             cCCceeeccccccc
Confidence            88887776666554

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.73  E-value=0.031  Score=29.00  Aligned_cols=20  Identities=30%  Similarity=0.904  Sum_probs=11.5

Q ss_pred             CCCCCcCCcCCCcHHHHHHHH
Q psy4688          42 KTCPICNKSYPGARNMRKHLR   62 (388)
Q Consensus        42 ~~C~~C~~~f~~~~~l~~H~~   62 (388)
                      ..|++||+.| ....|.+|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            4566666666 4455666653

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.98  E-value=0.035  Score=31.49  Aligned_cols=23  Identities=26%  Similarity=0.600  Sum_probs=19.9

Q ss_pred             ccccCCCcccccChhhHHhHHhh
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNW  335 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~  335 (388)
                      +|.|++|++.|.+...+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            57899999999999999999874

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893|consensus

Probab=93.95  E-value=0.034  Score=45.81  Aligned_cols=47  Identities=28%  Similarity=0.625  Sum_probs=34.6

Q ss_pred             ccccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccchhhccccc
Q psy4688         254 CDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHL  304 (388)
Q Consensus       254 C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~  304 (388)
                      |-+|++.|.....|.+|++.    +-|+|.+|.|...+--.|.+|-+.+|.
T Consensus        13 cwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhhh
Confidence            77888888888888777653    457888888777777777777666553

>TIGR00622 ssl1 transcription factor ssl1

Probab=93.56  E-value=0.077  Score=38.85  Aligned_cols=47  Identities=17%  Similarity=0.190  Sum_probs=25.4

Q ss_pred             ccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhc
Q psy4688         315 KCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHT  363 (388)
Q Consensus       315 ~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~  363 (388)
                      .|--|...|........  ........|.|+.|...|  .-..-.|...|+
T Consensus        57 ~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             cccCcCCCCCCcccccc--cccccccceeCCCCCCccccccchhhhhhccC
Confidence            37778887765431110  001223457788887777  334555655554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.35  E-value=0.063  Score=30.40  Aligned_cols=23  Identities=17%  Similarity=0.758  Sum_probs=16.3

Q ss_pred             cccccccCCcCCChhHHHHHHhh
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISG  273 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~  273 (388)
                      +|.|++|++.|.+...+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46677777777777777777653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2482|consensus

Probab=93.20  E-value=0.13  Score=44.99  Aligned_cols=117  Identities=26%  Similarity=0.489  Sum_probs=82.5

Q ss_pred             CCcCCCCCcCCcCCC-cHHHHHHHHhhccCC---------------------CccccccchhcccChhhHHHHHHhh-cc
Q psy4688          39 NKTKTCPICNKSYPG-ARNMRKHLRLVHDKN---------------------STTTCTMCKKTFRNKATFQKHMQRA-HV   95 (388)
Q Consensus        39 ~~~~~C~~C~~~f~~-~~~l~~H~~~~h~~~---------------------~~~~C~~C~~~f~~~~~l~~H~~~~-h~   95 (388)
                      .....|-.|+..+.. ++....|+-.+|.-+                     ..+.|-+|.+.|.++..|+.||+.. |.
T Consensus       142 ~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hr  221 (423)
T KOG2482|consen  142 IFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHR  221 (423)
T ss_pred             eeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCc
Confidence            345789999988754 556667765445311                     2468999999999999999999743 21


Q ss_pred             CCCc-----------------------------------------------CCCCc--cccccchhccCCchHHHHHHhh
Q psy4688          96 GLKI-----------------------------------------------SVSKH--FECNYCHAKFSNKSLLSDHISS  126 (388)
Q Consensus        96 ~~~~-----------------------------------------------~~~~~--~~C~~C~~~f~~~~~L~~H~~~  126 (388)
                      .+..                                               ....+  ..|-.|.....+...|..||..
T Consensus       222 rinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~  301 (423)
T KOG2482|consen  222 RINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKI  301 (423)
T ss_pred             ccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHH
Confidence            1100                                               00112  5899999999999999999975


Q ss_pred             cCC---------------------------CCCccCCccccccCChHHHHHHHhhh
Q psy4688         127 HTG---------------------------LKNYKCHVCDKAYSCRKALKTHTLLH  155 (388)
Q Consensus       127 h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~~h  155 (388)
                      -+.                           ...-.|-.|+-.|.....|..||..+
T Consensus       302 vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  302 VHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             HHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence            321                           01236888999999999999999754

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.16  E-value=0.043  Score=51.98  Aligned_cols=154  Identities=19%  Similarity=0.308  Sum_probs=105.3

Q ss_pred             CCCcccccccccCCchHHHHhHHh-hhCCC--CcccCC--CCcccCCChhHHHHHHHHhccCCcccccCccccc--ccCC
Q psy4688         187 RVTVCPKCNRDYRNPRNMRKHLRR-VHTSV--RKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECD--YCGA  259 (388)
Q Consensus       187 ~~~~C~~C~~~f~~~~~l~~H~~~-~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~--~C~~  259 (388)
                      ..+.|..|...|.....|..|... .|.++  +++.|+  .|++.|.....+..|...+.....      +.+.  .+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  361 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISP------AKEKLLNSSS  361 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCc------cccccccCcc
Confidence            367899999999999999999764 89999  999999  899999999999999999886552      2222  2333


Q ss_pred             cCCChhH-----HHHHHhhcCCCCCcccc--ccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHHhH
Q psy4688         260 KYPNKYT-----LSDHISGHTGIPNHICK--ICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKH  332 (388)
Q Consensus       260 ~f~~~~~-----L~~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H  332 (388)
                      .+.....     .......-.....+.+.  .|...+.....+..|. ..|..   .....+.+..|.+.|.....|..|
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  437 (467)
T COG5048         362 KFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHI-ITHLS---FRPYNCKNPPCSKSFNRHYNLIPH  437 (467)
T ss_pred             ccccccCCCCccchhhccCccCCccccccccchhhhhcccccccccc-ccccc---cCCcCCCCCcchhhccCccccccc
Confidence            3332222     11111111222333332  2556666666666663 33322   123468899999999999999999


Q ss_pred             HhhhcCCCcccCCcchhh
Q psy4688         333 KNWAHGDKFHLCKVCGAK  350 (388)
Q Consensus       333 ~~~hh~~~~~~C~~C~~~  350 (388)
                      ++.+....++.|..++..
T Consensus       438 ~~~~~~~~~~~~~~~~~~  455 (467)
T COG5048         438 KKIHTNHAPLLCSILKSF  455 (467)
T ss_pred             ccccccCCceeecccccc
Confidence            999887777766655543

>TIGR00622 ssl1 transcription factor ssl1

Probab=92.26  E-value=0.39  Score=35.29  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=16.1

Q ss_pred             CcccCCCCcccCCChhHHHHH
Q psy4688         216 RKYGCDECGKMLKSRDSLNTH  236 (388)
Q Consensus       216 ~~~~C~~C~~~f~~~~~l~~H  236 (388)
                      -|..|++||-+..+...|.+-
T Consensus        14 LP~~CpiCgLtLVss~HLARS   34 (112)
T TIGR00622        14 LPVECPICGLTLILSTHLARS   34 (112)
T ss_pred             CCCcCCcCCCEEeccchHHHh
Confidence            477888888888887777654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2893|consensus

Probab=92.02  E-value=0.048  Score=44.97  Aligned_cols=47  Identities=21%  Similarity=0.523  Sum_probs=30.8

Q ss_pred             CCCCcCCcCCCcHHHHHHHHhhccCCCccccccchhcccChhhHHHHHHhhc
Q psy4688          43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAH   94 (388)
Q Consensus        43 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h   94 (388)
                      -|-+|++.|.+..-|..|.+..|     |+|.+|.+...+--.|..|....|
T Consensus        12 wcwycnrefddekiliqhqkakh-----fkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAKH-----FKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             eeeecccccchhhhhhhhhhhcc-----ceeeeehhhhccCCCceeehhhhh
Confidence            47777777777777777765433     677777776666666666654444

>KOG1146|consensus

Probab=92.01  E-value=0.06  Score=55.57  Aligned_cols=83  Identities=18%  Similarity=0.294  Sum_probs=64.6

Q ss_pred             cccccccccCCchHHHHhHHhhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcc-------------------cccC
Q psy4688         190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKV-------------------KVKY  250 (388)
Q Consensus       190 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~-------------------~~~~  250 (388)
                      .|..|+..+.....+..|+...+.-.+.|.|+.|+..|+....|..|++..|.....                   ....
T Consensus       438 e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~  517 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGK  517 (1406)
T ss_pred             cccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCC
Confidence            355666677777777777777788788999999999999999999999985432110                   1234


Q ss_pred             cccccccCCcCCChhHHHHHHh
Q psy4688         251 EYECDYCGAKYPNKYTLSDHIS  272 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~  272 (388)
                      +|.|..|...+..+..|..|+.
T Consensus       518 p~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  518 PYPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             cccceeeeeeeecchHHHHHHH
Confidence            7899999999999999999974

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=91.71  E-value=0.097  Score=29.27  Aligned_cols=7  Identities=29%  Similarity=1.279  Sum_probs=3.0

Q ss_pred             ccccccc
Q psy4688         281 ICKICNK  287 (388)
Q Consensus       281 ~C~~C~k  287 (388)
                      +|.+||.
T Consensus         3 ~C~~CGy    9 (33)
T cd00350           3 VCPVCGY    9 (33)
T ss_pred             ECCCCCC
Confidence            3444443

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=90.31  E-value=0.14  Score=31.64  Aligned_cols=29  Identities=34%  Similarity=0.549  Sum_probs=24.7

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcC
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      ++.-+.||-||..|....++.+|....|+
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            34568899999999999999999988776

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=90.27  E-value=0.16  Score=31.42  Aligned_cols=28  Identities=25%  Similarity=0.653  Sum_probs=17.0

Q ss_pred             CCCccccccchhcccChhhHHHHHHhhc
Q psy4688          67 KNSTTTCTMCKKTFRNKATFQKHMQRAH   94 (388)
Q Consensus        67 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h   94 (388)
                      ++.-+.|+-|+..|....++.+|+...|
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            3444566666666666666666665555

>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []

Probab=89.37  E-value=0.38  Score=29.31  Aligned_cols=42  Identities=19%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             ccccccccccccccccchhhccccccccCCCCCccccCCCccc
Q psy4688         280 HICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKE  322 (388)
Q Consensus       280 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~  322 (388)
                      |+|.+|+..|.....-..+.+..-..+...+ ..|.|++|+..
T Consensus         2 y~C~~CgyvYd~~~Gd~~~~i~pGt~F~~Lp-~~w~CP~C~a~   43 (47)
T PF00301_consen    2 YQCPVCGYVYDPEKGDPENGIPPGTPFEDLP-DDWVCPVCGAP   43 (47)
T ss_dssp             EEETTTSBEEETTTBBGGGTB-TT--GGGS--TT-B-TTTSSB
T ss_pred             cCCCCCCEEEcCCcCCcccCcCCCCCHHHCC-CCCcCcCCCCc
Confidence            6788888777655544333322222222222 34788888753

The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....

>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []

Probab=87.50  E-value=0.047  Score=32.24  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=17.7

Q ss_pred             ccccceeeecccccCCCCCceee
Q psy4688           3 FDRAEVFLSQNVQMSNLSGSCVV   25 (388)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~   25 (388)
                      ||++|+.||.+++.+|+.+..++
T Consensus        18 L~~~Qk~ly~dvm~Eny~~l~sl   40 (41)
T PF01352_consen   18 LDPAQKNLYRDVMLENYRNLVSL   40 (41)
T ss_dssp             S-HHHHHHHHHHHHHTTTS---S
T ss_pred             ccceecccchhHHHHhhcccEec
Confidence            99999999999999999886443

It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.

>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center

Probab=87.15  E-value=0.43  Score=29.52  Aligned_cols=12  Identities=33%  Similarity=0.639  Sum_probs=8.1

Q ss_pred             cccccccccccc
Q psy4688         280 HICKICNKGYAC  291 (388)
Q Consensus       280 ~~C~~C~k~f~~  291 (388)
                      |+|.+||..|..
T Consensus         2 y~C~~CgyiYd~   13 (50)
T cd00730           2 YECRICGYIYDP   13 (50)
T ss_pred             cCCCCCCeEECC
Confidence            567777776654

Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=87.01  E-value=0.36  Score=31.23  Aligned_cols=46  Identities=20%  Similarity=0.477  Sum_probs=23.6

Q ss_pred             CccccCC--CcccccChhhHHhHHhhhcCCCcccCCc----chhhH-HhHHHHH
Q psy4688         312 EKFKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCKV----CGAKI-KGSLKQH  358 (388)
Q Consensus       312 ~~~~C~~--C~k~F~~~~~L~~H~~~hh~~~~~~C~~----C~~~f-~~~L~~H  358 (388)
                      .+..|+.  |...+. +..|..|+...-..++..|++    |+..+ +..|..|
T Consensus         8 ~~v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    8 RPVPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             SEEE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             CEeeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            4566776  444443 556777777555556666776    66655 3344443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.31  E-value=0.47  Score=39.99  Aligned_cols=13  Identities=31%  Similarity=0.764  Sum_probs=9.9

Q ss_pred             cccCCCcccccCh
Q psy4688         314 FKCDLCDKEFFEK  326 (388)
Q Consensus       314 ~~C~~C~k~F~~~  326 (388)
                      ..||.||.+|...
T Consensus        49 ~vCP~CgyA~~~~   61 (214)
T PF09986_consen   49 WVCPHCGYAAFEE   61 (214)
T ss_pred             EECCCCCCccccc
Confidence            5788888887754

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=85.77  E-value=1  Score=33.43  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=24.1

Q ss_pred             cccc----CCCcccccChhhHHhHHhhhcC
Q psy4688         313 KFKC----DLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       313 ~~~C----~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      -|.|    +.|+..+.+...|.+|.+.+||
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            4899    9999999999999999999886

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=85.67  E-value=0.45  Score=26.77  Aligned_cols=6  Identities=33%  Similarity=1.248  Sum_probs=2.3

Q ss_pred             ccCCCc
Q psy4688         315 KCDLCD  320 (388)
Q Consensus       315 ~C~~C~  320 (388)
                      .|.+||
T Consensus         4 ~C~~CG    9 (34)
T cd00729           4 VCPVCG    9 (34)
T ss_pred             ECCCCC
Confidence            333333

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=84.04  E-value=0.67  Score=26.75  Aligned_cols=11  Identities=27%  Similarity=0.890  Sum_probs=6.6

Q ss_pred             ccccCCCcccc
Q psy4688         313 KFKCDLCDKEF  323 (388)
Q Consensus       313 ~~~C~~C~k~F  323 (388)
                      ...|+.|+..|
T Consensus        25 ~v~C~~C~~~~   35 (38)
T TIGR02098        25 KVRCGKCGHVW   35 (38)
T ss_pred             EEECCCCCCEE
Confidence            35666666655

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=83.74  E-value=1.9  Score=31.97  Aligned_cols=26  Identities=31%  Similarity=0.712  Sum_probs=18.6

Q ss_pred             CCCcccccccccCCchHHHHhHHhhhC
Q psy4688         187 RVTVCPKCNRDYRNPRNMRKHLRRVHT  213 (388)
Q Consensus       187 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  213 (388)
                      +...|..|+..... +++..|++..|.
T Consensus        10 ~vlIC~~C~~av~~-~~v~~HL~~~H~   35 (109)
T PF12013_consen   10 RVLICRQCQYAVQP-SEVESHLRKRHH   35 (109)
T ss_pred             CEEEeCCCCcccCc-hHHHHHHHHhcc
Confidence            34568888877655 788888876654

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PHA00626 hypothetical protein

Probab=83.63  E-value=0.72  Score=28.76  Aligned_cols=14  Identities=14%  Similarity=0.363  Sum_probs=8.4

Q ss_pred             CccccCCCcccccC
Q psy4688         312 EKFKCDLCDKEFFE  325 (388)
Q Consensus       312 ~~~~C~~C~k~F~~  325 (388)
                      ..|.|+.||..|+.
T Consensus        22 nrYkCkdCGY~ft~   35 (59)
T PHA00626         22 DDYVCCDCGYNDSK   35 (59)
T ss_pred             cceEcCCCCCeech
Confidence            34666666666643

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=83.48  E-value=0.56  Score=37.33  Aligned_cols=11  Identities=55%  Similarity=1.174  Sum_probs=5.4

Q ss_pred             CCCCccccccc
Q psy4688         364 GERKYCCHICG  374 (388)
Q Consensus       364 ~~~~~~C~~C~  374 (388)
                      |+.|-+||+||
T Consensus       146 ge~P~~CPiCg  156 (166)
T COG1592         146 GEAPEVCPICG  156 (166)
T ss_pred             CCCCCcCCCCC
Confidence            34445555554

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=83.36  E-value=0.88  Score=25.96  Aligned_cols=32  Identities=28%  Similarity=0.792  Sum_probs=18.4

Q ss_pred             cccccccccCCchHHHHhHHhhhCCCCcccCCCCcccC
Q psy4688         190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKML  227 (388)
Q Consensus       190 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f  227 (388)
                      .|+.|+..|.-....      +-......+|+.|+..|
T Consensus         4 ~Cp~C~~~y~i~d~~------ip~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    4 TCPNCQAKYEIDDEK------IPPKGRKVRCSKCGHVF   35 (36)
T ss_pred             ECCCCCCEEeCCHHH------CCCCCcEEECCCCCCEe
Confidence            477777777655432      22333456777777665

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=81.98  E-value=0.67  Score=29.94  Aligned_cols=46  Identities=26%  Similarity=0.519  Sum_probs=31.6

Q ss_pred             CCcccCCc--chhhH-HhHHHHHHHHhcCCCCccccc----cchhh-Hhhhhhh
Q psy4688         339 DKFHLCKV--CGAKI-KGSLKQHMITHTGERKYCCHI----CGKKL-RGKLKEH  384 (388)
Q Consensus       339 ~~~~~C~~--C~~~f-~~~L~~H~~~H~~~~~~~C~~----C~k~f-~~~l~~H  384 (388)
                      ..+-.|+.  |...+ +..|..|+..-=..++-.|++    |+..+ ...|..|
T Consensus         7 ~~~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    7 FRPVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             TSEEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             CCEeeCCCCCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            45678988  65656 778999999766777889999    99998 5567766

>KOG2186|consensus

Probab=81.65  E-value=0.7  Score=38.87  Aligned_cols=46  Identities=20%  Similarity=0.589  Sum_probs=21.4

Q ss_pred             ccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHh
Q psy4688         218 YGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHIS  272 (388)
Q Consensus       218 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~  272 (388)
                      |.|..||....-+ .+.+|+..-++.       -|.|-.|++.|.. .....|..
T Consensus         4 FtCnvCgEsvKKp-~vekH~srCrn~-------~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVKKP-QVEKHMSRCRNA-------YFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehhhhhhhcccc-chHHHHHhccCC-------eeEEeeccccccc-chhhhhhh
Confidence            4555555544332 344455444331       2555555555544 44444443

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=81.45  E-value=0.99  Score=33.21  Aligned_cols=12  Identities=33%  Similarity=0.719  Sum_probs=5.4

Q ss_pred             ccccCCCccccc
Q psy4688         313 KFKCDLCDKEFF  324 (388)
Q Consensus       313 ~~~C~~C~k~F~  324 (388)
                      |..|+.||..|.
T Consensus        26 PivCP~CG~~~~   37 (108)
T PF09538_consen   26 PIVCPKCGTEFP   37 (108)
T ss_pred             CccCCCCCCccC
Confidence            344444444443

The function of members of this family is unknown.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=80.93  E-value=1.1  Score=25.79  Aligned_cols=33  Identities=30%  Similarity=0.893  Sum_probs=19.2

Q ss_pred             cccccccccCCchHHHHhHHhhhCCCCcccCCCCcccCC
Q psy4688         190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLK  228 (388)
Q Consensus       190 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~  228 (388)
                      .||.|+..|.-..+.      .-.+.....|+.|+..|.
T Consensus         4 ~CP~C~~~f~v~~~~------l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    4 TCPNCQTRFRVPDDK------LPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             ECCCCCceEEcCHHH------cccCCcEEECCCCCcEee
Confidence            477777777655431      123344567777776663

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=80.44  E-value=0.9  Score=33.43  Aligned_cols=28  Identities=25%  Similarity=0.729  Sum_probs=18.9

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI  351 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f  351 (388)
                      +..|+.||++|...           +..|-.|+.||..|
T Consensus         9 KR~Cp~CG~kFYDL-----------nk~PivCP~CG~~~   36 (108)
T PF09538_consen    9 KRTCPSCGAKFYDL-----------NKDPIVCPKCGTEF   36 (108)
T ss_pred             cccCCCCcchhccC-----------CCCCccCCCCCCcc
Confidence            35688888888653           23566777777776

The function of members of this family is unknown.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.24  E-value=0.37  Score=40.58  Aligned_cols=10  Identities=30%  Similarity=0.541  Sum_probs=5.6

Q ss_pred             cccccCCcCC
Q psy4688         253 ECDYCGAKYP  262 (388)
Q Consensus       253 ~C~~C~~~f~  262 (388)
                      .|+.||.+|.
T Consensus        50 vCP~CgyA~~   59 (214)
T PF09986_consen   50 VCPHCGYAAF   59 (214)
T ss_pred             ECCCCCCccc
Confidence            4666665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	388
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-17
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-14
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		4e-13
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-07
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		5e-06
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		2e-06
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		2e-04
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		6e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		8e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-04
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		8e-06
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		1e-04
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-05
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-04
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		1e-05
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		1e-04
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-05
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		2e-05
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		2e-05
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		3e-05
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		4e-05
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-04
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		8e-05
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		9e-05
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		1e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-04
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		2e-04
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		8e-04
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		5e-04
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		6e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 85/201 (42%), Gaps = 36/201 (17%)
Query: 39  NKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLK 98
            K   CP C KS+  + ++ +H R  H       C  C K+F +K    +H QR H G K
Sbjct: 19  EKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEK 76
Query: 99  ISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQE 158
                 ++C  C   FS ++ L  H  +HTG K Y C  C K++S    L+ H   H  E
Sbjct: 77  P-----YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 159 KVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKY 218
           K  K                            CP+C + +    N+  H +R HT  + Y
Sbjct: 132 KPYK----------------------------CPECGKSFSREDNLHTH-QRTHTGEKPY 162
Query: 219 GCDECGKMLKSRDSLNTHKKI 239
            C ECGK    RD+LN H++ 
Sbjct: 163 KCPECGKSFSRRDALNVHQRT 183

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 81/201 (40%), Gaps = 36/201 (17%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
           K + C  C   FS    L++H  +HTG K YKC  C K++S +K L  H   H  EK  K
Sbjct: 20  KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 163 SSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDE 222
                                       CP+C + +    N+R H +R HT  + Y C E
Sbjct: 80  ----------------------------CPECGKSFSQRANLRAH-QRTHTGEKPYACPE 110
Query: 223 CGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPNHIC 282
           CGK       L  H++  H G          C  CG  +  +  L  H   HTG   + C
Sbjct: 111 CGKSFSQLAHLRAHQRT-HTG-----EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 283 KICNKGYACAASLKIHNIKTH 303
             C K ++   +L +H  +TH
Sbjct: 165 PECGKSFSRRDALNVHQ-RTH 184

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 14/164 (8%)
Query: 216 RKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHT 275
           + Y C ECGK     D L  H++  H G          C  CG  + +K  L+ H   HT
Sbjct: 20  KPYACPECGKSFSRSDHLAEHQRT-HTGEKPYK-----CPECGKSFSDKKDLTRHQRTHT 73
Query: 276 GIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNW 335
           G   + C  C K ++  A+L+ H      Q T    + + C  C K F +   L  H+  
Sbjct: 74  GEKPYKCPECGKSFSQRANLRAH------QRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127
Query: 336 AHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL 377
             G+K + C  CG     + +L  H  THTGE+ Y C  CGK  
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF 171

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
           C  C K+F   +  QKH QR H G K      ++C  C   FS  S L  H  +HTG K 
Sbjct: 7   CPECGKSFSQSSNLQKH-QRTHTGEKP-----YKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 133 YKCHVCDKAYSCRKALKTHTLLHEQEK 159
           YKC  C K++S    L  H   H+ +K
Sbjct: 61  YKCPECGKSFSRSDHLSRHQRTHQNKK 87

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 314 FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERKYCCH 371
           +KC  C K F +   L KH+    G+K + C  CG     S  L++H  THTGE+ Y C 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 372 ICGKKL 377
            CGK  
Sbjct: 65  ECGKSF 70

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
           C +C K+F+  +T   H+      L  S ++ + C YC  +F  KS +  H   HTG K 
Sbjct: 4   CKICGKSFKRSSTLSTHL------LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 133 YKCHVCDKAYSCRKALKTHTLLH 155
           +KC VC KA+S    L TH+  H
Sbjct: 58  HKCQVCGKAFSQSSNLITHSRKH 80

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 218 YGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGI 277
           + C  CGK  K   +L+TH  I  +           C YCG ++  K  +  H   HTG 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSD------TRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 278 PNHICKICNKGYACAASLKIHNIK 301
             H C++C K ++ +++L  H+ K
Sbjct: 56  KPHKCQVCGKAFSQSSNLITHSRK 79

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
           K ++C+ C A F  K  L+ H + HTG K Y+C++C   ++    LKTHT +H  EK
Sbjct: 16  KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
           C + F   A   +H+ R H G      K F+C  C   FS    L+ HI +HTG K + C
Sbjct: 12  CDRRFSRSADLTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
            +C + ++     K HT +H ++K
Sbjct: 66  DICGRKFARSDERKRHTKIHLRQK 89

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
           P+E      CD+ F     L +H     G K   C++C      S  L  H+ THTGE+ 
Sbjct: 8   PVES-----CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
           + C ICG+K 
Sbjct: 63  FACDICGRKF 72

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
           C + F   A   +H+ R H G      K F+C  C   FS    L+ HI +HTG K + C
Sbjct: 12  CDRRFSRSAELTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
            +C + ++     K HT +H ++K
Sbjct: 66  DICGRKFARSDERKRHTKIHLRQK 89

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
           P+E      CD+ F    +L +H     G K   C++C      S  L  H+ THTGE+ 
Sbjct: 8   PVES-----CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
           + C ICG+K 
Sbjct: 63  FACDICGRKF 72

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
           C + F    +  +H+ R H G      K F+C  C   FS    L+ HI +HTG K + C
Sbjct: 12  CDRRFSQSGSLTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
            +C + ++     K HT +H ++K
Sbjct: 66  DICGRKFARSDERKRHTKIHLRQK 89

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
           P+E      CD+ F +   L +H     G K   C++C      S  L  H+ THTGE+ 
Sbjct: 8   PVES-----CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
           + C ICG+K 
Sbjct: 63  FACDICGRKF 72

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
           C + F + +   +H+ R H G      K F+C  C   FS    L+ HI +HTG K + C
Sbjct: 12  CDRRFSDSSNLTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
            +C + ++     K HT +H ++K
Sbjct: 66  DICGRKFARSDERKRHTKIHLRQK 89

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
           P+E      CD+ F +   L +H     G K   C++C      S  L  H+ THTGE+ 
Sbjct: 8   PVES-----CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
           + C ICG+K 
Sbjct: 63  FACDICGRKF 72

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERK 367
           P+E      CD+ F +K  L+ H     G K   C++C      + SL  H+ THTGE+ 
Sbjct: 8   PVES-----CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
           + C ICG+K 
Sbjct: 63  FACDICGRKF 72

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 184 IKRRVTVCP--KCNRDYRNPRNMRKHLRRVHT-SVRKYGCDECGKMLKSRDSLNTHKKIQ 240
           ++ R   CP   C + +R+   MRKHL   HT   R + C ECGK       L  H+ + 
Sbjct: 1   MEPRTIACPHKGCTKMFRDNSAMRKHL---HTHGPRVHVCAECGKAFVESSKLKRHQLV- 56
Query: 241 HEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKIH 298
           H G           + CG ++   + L  H+  HTG   ++C    CNK +A + +LK H
Sbjct: 57  HTGEKPFQCTF---EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Query: 299 NIKTH 303
            I TH
Sbjct: 114 -ILTH 117

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 272 SGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNK 331
           SG +G+    C  C+K +     LK+HN K     TG   + F+C  C K +F K+ L +
Sbjct: 3   SGSSGVE---CPTCHKKFLSKYYLKVHNRK----HTGE--KPFECPKCGKCYFRKENLLE 53
Query: 332 HKN---WAHGDKFHLCKVCGAKIKG--SLKQHMITHTGERKYCCHICGKKLRGK--LKEH 384
           H+        ++   C VC    +    L+ HM++HTGE  Y C  C ++   K  L+ H
Sbjct: 54  HEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Query: 385 ML 386
           M+
Sbjct: 114 MI 115

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIK--GSLKQHMITHTGERK 367
           P+E      CD+ F +K  L+ H     G K   C++C         L QH+ THTGE+ 
Sbjct: 8   PVES-----CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
           + C ICG+K 
Sbjct: 63  FACDICGRKF 72

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
           C + F       +H+ R H G      K F+C  C   FS    L+ HI +HTG K + C
Sbjct: 12  CDRRFSRSDELTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
            +C + ++     K HT +H ++K
Sbjct: 66  DICGRKFARSDERKRHTKIHLRQK 89

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
           P+E      CD+ F    +L +H     G K   C++C      S  L  H+ THTGE+ 
Sbjct: 8   PVES-----CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
           + C ICG+K 
Sbjct: 63  FACDICGRKF 72

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
           C K+F +K+   +HM   H+GL+      + C  C  KF  K  L  H+  HTG+K Y+C
Sbjct: 15  CGKSFTHKSQRDRHMS-MHLGLRP-----YGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 136 HVCDKAYSCRKALKTHT 152
           ++C K +  R +   H 
Sbjct: 69  NICAKRFMWRDSFHRHV 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 65  HDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHI 124
           H++        C + F       +H+ R H G      K F+C  C   FS    L+ HI
Sbjct: 1   HERPYACPVESCDRRFSRSDELTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHI 54
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
            +HTG K + C +C + ++     K HT +H
Sbjct: 55  RTHTGEKPFACDICGRKFARSDERKRHTKIH 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 303 HLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMI 360
           H +    P+E      CD+ F    +L +H     G K   C++C      S  L  H+ 
Sbjct: 1   HERPYACPVES-----CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 361 THTGERKYCCHICGKKL 377
           THTGE+ + C ICG+K 
Sbjct: 56  THTGEKPFACDICGRKF 72

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
           C + F       +H+ R H G      K F+C  C   FS    L+ HI +HTG K + C
Sbjct: 11  CDRRFSRSDELTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 64
Query: 136 HVCDKAYSCRKALKTHTLLH 155
            +C + ++     K HT +H
Sbjct: 65  DICGRKFARSDERKRHTKIH 84

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
           P+E      CD+ F    +L +H     G K   C++C      S  L  H+ THTGE+ 
Sbjct: 7   PVES-----CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 368 YCCHICGKKL 377
           + C ICG+K 
Sbjct: 62  FACDICGRKF 71

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 75  MCKKTFRNKATFQ-KHMQ---RAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHT 128
           MC     NK  F+  H+Q   R H G K      ++C++  C  +FS    L  H   HT
Sbjct: 8   MCAYPGCNKRYFKLSHLQMHSRKHTGEKP-----YQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 129 GLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVI 161
           G+K ++C  C + +S    LKTHT  H  EK  
Sbjct: 63  GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 285 CNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDL--CDKEFFEKKKLNKHKNWAHGDKFH 342
           CNK Y   + L++H+ K     TG   + ++CD   C++ F    +L +H+    G K  
Sbjct: 14  CNKRYFKLSHLQMHSRK----HTGE--KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 343 LCKVCGAKIKGS--LKQHMITHTGERKYCC 370
            CK C  K   S  LK H  THTGE+ + C
Sbjct: 68  QCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 179 EWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKK 238
           EW    +RR   C +C + + +  ++ KH RR HT  + Y CDECGK    R  L  H +
Sbjct: 10  EWQQRERRRYK-CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Query: 239 I 239
           +
Sbjct: 68  V 68

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 106 ECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
           +C  C   FS K  L  H+  HTG+K YKC  CD A +   +L  H  +H  E+  K
Sbjct: 10  KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	388
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-19
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-18
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-16
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-16
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	9e-13
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	8e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-11
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-10
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-13
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	9e-12
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-11
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-11
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-13
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-11
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-10
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	8e-12
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-09
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	7e-09
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-11
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	8e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	9e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	7e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	9e-11
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-07
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-07
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	6e-07
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	6e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	7e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-10
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-10
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	5e-10
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	6e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-06
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	7e-10
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-09
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	6e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-09
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-06
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	5e-06
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	8e-09
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	9e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	6e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	9e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-07
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	7e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-06
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	8e-05
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	8e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-08
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-07
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-08
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	6e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-06
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	9e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	7e-08
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	6e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	9e-08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-07
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	9e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	4e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	7e-04
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	3e-05
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	7e-05
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-05
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	4e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	5e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	5e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	6e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	7e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	9e-05
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	2e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	4e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-04
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	2e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	5e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-04
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-04
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-04
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	4e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-04
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-04
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	5e-04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	5e-04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	6e-04
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-04
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-04
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	8e-04
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	9e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 82.9 bits (206), Expect = 7e-19
 Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 17/176 (9%)

Query: 203 NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYP 262
           +       +    + Y C ECGK     D L  H++  H G+K      Y+C  CG  + 
Sbjct: 8   SSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGEK-----PYKCPECGKSFS 60

Query: 263 NKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDK 321
           +K  L+ H   HTG   + C  C K ++  A+L+ H  +TH   TG   EK + C  C K
Sbjct: 61  DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ-RTH---TG---EKPYACPECGK 113

Query: 322 EFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK 375
            F +   L  H+    G+K + C  CG     + +L  H  THTGE+ Y C  CGK
Sbjct: 114 SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 82.1 bits (204), Expect = 1e-18
 Identities = 59/220 (26%), Positives = 86/220 (39%), Gaps = 41/220 (18%)

Query: 79  TFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVC 138
           +    ++          G      K + C  C   FS    L++H  +HTG K YKC  C
Sbjct: 2   SEFGSSSSVAQ-AALEPG-----EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPEC 55

Query: 139 DKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDY 198
            K++S +K L  H   H  EK  K                            CP+C + +
Sbjct: 56  GKSFSDKKDLTRHQRTHTGEKPYK----------------------------CPECGKSF 87

Query: 199 RNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCG 258
               N+R H +R HT  + Y C ECGK       L  H++  H G+K      Y+C  CG
Sbjct: 88  SQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEK-----PYKCPECG 140

Query: 259 AKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIH 298
             +  +  L  H   HTG   + C  C K ++   +L +H
Sbjct: 141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 74.8 bits (185), Expect = 5e-16
 Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 19/180 (10%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
           CP+C + +    ++ +H +R HT  + Y C ECGK    +  L  H++  H G+K     
Sbjct: 24  CPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTGEK----- 76

Query: 251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVP 310
            Y+C  CG  +  +  L  H   HTG   + C  C K ++  A L+ H  +TH   TG  
Sbjct: 77  PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ-RTH---TG-- 130

Query: 311 IEK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI---KGSLKQHMITHTGER 366
            EK +KC  C K F  +  L+ H+    G+K + C  CG K    + +L  H  THTG++
Sbjct: 131 -EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG-KSFSRRDALNVHQRTHTGKK 188

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 74.4 bits (184), Expect = 6e-16
 Identities = 64/208 (30%), Positives = 89/208 (42%), Gaps = 47/208 (22%)

Query: 43  TCPICNKSYPGARNMRKHLRLVHDKNSTT-----TCTMCKKTFRNKATFQKHMQRAHVGL 97
            CP C KS+  + ++ +H R  H     T      C  C K+F +K    +H QR H G 
Sbjct: 23  ACPECGKSFSRSDHLAEHQR-TH-----TGEKPYKCPECGKSFSDKKDLTRH-QRTHTG- 74

Query: 98  KISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQ 157
                K ++C  C   FS ++ L  H  +HTG K Y C  C K++S    L+ H   H  
Sbjct: 75  ----EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130

Query: 158 EKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRK 217
           EK  K                            CP+C + +    N+  H +R HT  + 
Sbjct: 131 EKPYK----------------------------CPECGKSFSREDNLHTH-QRTHTGEKP 161

Query: 218 YGCDECGKMLKSRDSLNTHKKIQHEGKK 245
           Y C ECGK    RD+LN H++  H GKK
Sbjct: 162 YKCPECGKSFSRRDALNVHQRT-HTGKK 188

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 29/164 (17%)

Query: 218 YGCDECGKMLKSRDSLNTHKKIQ--HEGKKVKVKYEYECDYCGAKYPNK-----YTLSDH 270
              D C +   S++ L  H   +  H  +K     E+ C + G     +     Y L  H
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERK-----EFVCHWGGCSRELRPFKAQYMLVVH 58

Query: 271 ISGHTGIPNHICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKC--DLCDKEFFE 325
           +  HTG   H C    C K Y+   +LK H +++H   TG   EK + C  + C K F  
Sbjct: 59  MRRHTGEKPHKCTFEGCRKSYSRLENLKTH-LRSH---TG---EKPYMCEHEGCSKAFSN 111

Query: 326 KKKLNKHKNWAH-GDKFHLCKV--CGAK--IKGSLKQHMITHTG 364
                KH+N  H  +K ++CK+  C  +     SL++H+ T  G
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 64.5 bits (158), Expect = 9e-13
 Identities = 42/174 (24%), Positives = 61/174 (35%), Gaps = 32/174 (18%)

Query: 72  TCTMCKKTFRNKATFQKHM--QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTG 129
               C + F ++     H+  +  H   K  V     C+     F  + +L  H+  HTG
Sbjct: 5   RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64

Query: 130 LKNYKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRR 187
            K +KC    C K+YS  + LKTH   H  EK               C            
Sbjct: 65  EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYM------------CEH---------- 102

Query: 188 VTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKI 239
                 C++ + N  +  KH  R H++ + Y C    C K      SL  H K 
Sbjct: 103 ----EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 53.4 bits (129), Expect = 8e-09
 Identities = 40/186 (21%), Positives = 62/186 (33%), Gaps = 44/186 (23%)

Query: 103 KHFECNYCHAKFSNKSLLSDHISS---HTGLKNYKCHVCD-----KAYSCRKALKTHTLL 154
                + C  +F ++  L  HI+S   H   K + CH        + +  +  L  H   
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61

Query: 155 HEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTS 214
           H  EK  K            CT +               C + Y    N++ HL R HT 
Sbjct: 62  HTGEKPHK------------CTFEG--------------CRKSYSRLENLKTHL-RSHTG 94

Query: 215 VRKYGCDE--CGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGAKYPNKYTLSDH 270
            + Y C+   C K   +      H+   H  +K      Y C    C  +Y +  +L  H
Sbjct: 95  EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK-----PYVCKLPGCTKRYTDPSSLRKH 149

Query: 271 ISGHTG 276
           +    G
Sbjct: 150 VKTVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAH---GDKFHLCKVCGAKI-------KGSLKQHMI 360
           E   + D C +EF  +++L  H N  H     K  +C   G          +  L  HM 
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60

Query: 361 THTGERKYCCHI--CGKK--LRGKLKEHM 385
            HTGE+ + C    C K       LK H+
Sbjct: 61  RHTGEKPHKCTFEGCRKSYSRLENLKTHL 89

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 17/120 (14%)

Query: 43  TCPICNKSYPGARNMRKHLRLVHD-------KNSTTTCTMCKKTFRNKATFQKHMQRAHV 95
               C++ +     +  H+   H              C+   + F+ +     HM R H 
Sbjct: 5   RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHT 63

Query: 96  GLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKCH--VCDKAYSCRKALKTH 151
           G      K  +C +  C   +S    L  H+ SHTG K Y C    C KA+S       H
Sbjct: 64  G-----EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 35/180 (19%)

Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTV 190
            + +   C + +  ++ L  H       + I   +KEF+     C    W          
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHI----NSEHIHGERKEFV-----C---HWGG-------- 41

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKV 248
           C +  R ++    +  H+ R HT  + + C    C K     ++L TH +  H G+K   
Sbjct: 42  CSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEK--- 96

Query: 249 KYEYECDY--CGAKYPNKYTLSDHISG-HTGIPNHICKI--CNKGYACAASLKIHNIKTH 303
              Y C++  C   + N    + H +  H+    ++CK+  C K Y   +SL+ H +KT 
Sbjct: 97  --PYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH-VKTV 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 41/170 (24%)

Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGK---KVKVKYEYECDYCGAKYPNKY 265
           + +  +        C +   +   L TH  ++H G       V Y  EC   G  +  KY
Sbjct: 17  KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76

Query: 266 TLSDHISGHTGIPNHICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDL--CD 320
            L +HI  HTG     C    C K +A + +LKIH  +TH   TG   EK FKC+   CD
Sbjct: 77  KLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTH---TG---EKPFKCEFEGCD 129

Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCC 370
           + F                                K+HM  HT ++    
Sbjct: 130 RRFAN--------------------------SSDRKKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 40/180 (22%), Positives = 57/180 (31%), Gaps = 33/180 (18%)

Query: 47  CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVG---LKISVSK 103
              S    +        + +   +     C +TF        H+   HVG       V  
Sbjct: 3   SGSSGQPIKQELSCKW-IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61

Query: 104 HFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLHEQEKVI 161
             EC      F  K  L +HI  HTG K + C    C K ++  + LK H   H  EK  
Sbjct: 62  WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121

Query: 162 KSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCD 221
           K            C  +               C+R + N  + +KH   VHTS +     
Sbjct: 122 K------------CEFEG--------------CDRRFANSSDRKKH-MHVHTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 18/132 (13%)

Query: 40  KTKTCPICNKSYPGARNMRKHLRLVH--------DKNSTTTCTMCKKTFRNKATFQKHMQ 91
            ++    C++++     +  H+ + H               C    K+F+ K     H+ 
Sbjct: 24  LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI- 82

Query: 92  RAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKA 147
           R H G      K F C +  C   F+    L  H  +HTG K +KC    CD+ ++    
Sbjct: 83  RVHTG-----EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137

Query: 148 LKTHTLLHEQEK 159
            K H  +H  +K
Sbjct: 138 RKKHMHVHTSDK 149

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 24/191 (12%), Positives = 48/191 (25%), Gaps = 51/191 (26%)

Query: 78  KTFRNKATFQKHM--QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYK- 134
            +  +    ++ +  +                  C   FS    L  H++        + 
Sbjct: 2   SSGSSGQPIKQELSCKWIDEA-----QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN 56

Query: 135 --------CHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKR 186
                   C    K++  +  L  H  +H  EK               C           
Sbjct: 57  NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFP------------CPFPG------- 97

Query: 187 RVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGC--DECGKMLKSRDSLNTHKKIQHEGK 244
                  C + +    N++ H +R HT  + + C  + C +   +      H  + H   
Sbjct: 98  -------CGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSD 148

Query: 245 KVKVKYEYECD 255
           K          
Sbjct: 149 K-----SGPSS 154

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 66.0 bits (162), Expect = 1e-13
 Identities = 35/146 (23%), Positives = 48/146 (32%), Gaps = 32/146 (21%)

Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTH---TLLHEQEK 159
              EC  CH KF +K  L  H   HTG K ++C  C K Y  ++ L  H     ++  E+
Sbjct: 6   SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65

Query: 160 VIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYG 219
           V                              C  C   +R    +R H    HT    Y 
Sbjct: 66  VFT----------------------------CSVCQETFRRRMELRLH-MVSHTGEMPYK 96

Query: 220 CDECGKMLKSRDSLNTHKKIQHEGKK 245
           C  C +    +  L +H    H G  
Sbjct: 97  CSSCSQQFMQKKDLQSHMIKLHSGPS 122

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 61.0 bits (149), Expect = 9e-12
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 15/121 (12%)

Query: 273 GHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNK 331
           G +G     C  C+K +     LK+HN + H   TG   EK F+C  C K +F K+ L +
Sbjct: 1   GSSGSSGVECPTCHKKFLSKYYLKVHN-RKH---TG---EKPFECPKCGKCYFRKENLLE 53

Query: 332 HKNWAH---GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK--KLRGKLKEH 384
           H+        ++   C VC    + +  L+ HM++HTGE  Y C  C +    +  L+ H
Sbjct: 54  HEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113

Query: 385 M 385
           M
Sbjct: 114 M 114

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 43  TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRA--HVGLKIS 100
            CP C+K +     ++ H R  H       C  C K +  K    +H  R   +      
Sbjct: 9   ECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS---- 63

Query: 101 VSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTH 151
             + F C+ C   F  +  L  H+ SHTG   YKC  C + +  +K L++H
Sbjct: 64  -EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 58.7 bits (143), Expect = 6e-11
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDH- 270
            +      C  C K   S+  L  H +  H G+K      +EC  CG  Y  K  L +H 
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRK-HTGEK-----PFECPKCGKCYFRKENLLEHE 55

Query: 271 --ISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKK 327
                +       C +C + +     L++H   +H   TG   E  +KC  C ++F +KK
Sbjct: 56  ARNCMNRSEQVFTCSVCQETFRRRMELRLHM-VSH---TG---EMPYKCSSCSQQFMQKK 108

Query: 328 KLNKHKNWAH 337
            L  H    H
Sbjct: 109 DLQSHMIKLH 118

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 39/197 (19%), Positives = 64/197 (32%), Gaps = 25/197 (12%)

Query: 206 KHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGAKY 261
              + +    ++Y C   +CG        L  H    H G+K      + C    C   +
Sbjct: 2   GE-KALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HTGEK-----PFPCKEEGCEKGF 54

Query: 262 PNKYTLSDHISGHTGIPNHICK--ICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDL- 318
            + + L+ H   HTG  N  C    C+  +   A++K H          + I  + C   
Sbjct: 55  TSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH-FNRF---HNIKICVYVCHFE 110

Query: 319 -CDKEFFEKKKLNKHKNWAHGDKFHLCK--VCGA--KIKGSLKQHMITHTGERKYCCHIC 373
            C K F +  +L  H+        + C    C     +   LK+H   H G        C
Sbjct: 111 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 170

Query: 374 GK--KLRGKLKEHMLNT 388
               K      +H+   
Sbjct: 171 SFVGKTWTLYLKHVAEC 187

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 39/190 (20%), Positives = 61/190 (32%), Gaps = 42/190 (22%)

Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNY 133
           C   +      Q H    H G      K F C    C   F++   L+ H  +HTG KN+
Sbjct: 20  CGAAYNKNWKLQAH-LCKHTG-----EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 73

Query: 134 KC--HVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVC 191
            C    CD  ++ +  +K H       K+              C  +             
Sbjct: 74  TCDSDGCDLRFTTKANMKKHFNRFHNIKICVYV----------CHFEN------------ 111

Query: 192 PKCNRDYRNPRNMRKHLRRVHTSVRKYGCDE--CGKMLKSRDSLNTHKKIQHEGKKVKVK 249
             C + ++    ++ H +  HT    Y C    C K       L  H+K+ H G      
Sbjct: 112 --CGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYP---C 164

Query: 250 YE-YECDYCG 258
            +   C + G
Sbjct: 165 KKDDSCSFVG 174

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 39/173 (22%)

Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECN--YCHAKFSNKSLLSDHISSHTGLKN- 132
           C+K F +     +H    H G      K+F C+   C  +F+ K+ +  H +    +K  
Sbjct: 50  CEKGFTSLHHLTRH-SLTHTG-----EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKIC 103

Query: 133 -YKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVT 189
            Y CH   C KA+     LK H   H Q+   +            C  +           
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE------------CPHEG---------- 141

Query: 190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHE 242
               C++ +  P  +++H  +VH        D C  + K+      H    H+
Sbjct: 142 ----CDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 43/210 (20%), Positives = 69/210 (32%), Gaps = 44/210 (20%)

Query: 123 HISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEW 180
             +     K Y C    C  AY+    L+ H   H  EK               C  +  
Sbjct: 3   EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFP------------CKEE-- 48

Query: 181 NDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDE--CGKMLKSRDSLNTHKK 238
                        C + + +  ++ +H    HT  + + CD   C     ++ ++  H  
Sbjct: 49  ------------GCEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 95

Query: 239 IQHEGKKVKVKYEYECDY--CGAKYPNKYTLSDHISGHTGIPNHICK--ICNKGYACAAS 294
                 K+ V   Y C +  CG  +     L  H   HT    + C    C+K ++  + 
Sbjct: 96  R-FHNIKICV---YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSR 151

Query: 295 LKIHNIKTHLQFTGVPIEK-FKCDLCDKEF 323
           LK H  K H    G P +K   C    K +
Sbjct: 152 LKRHE-KVH---AGYPCKKDDSCSFVGKTW 177

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 42/184 (22%), Positives = 63/184 (34%), Gaps = 28/184 (15%)

Query: 194 CNRDYRNPRNMRKHLRRVHTSVRKYGCDE--CGKMLKSRDSLNTHKKIQHEGKKVKVKYE 251
           C   Y     ++ HL   HT  + + C E  C K   S   L  H    H G+K      
Sbjct: 20  CGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HTGEK-----N 72

Query: 252 YECD--YCGAKYPNKYTLSDHISGHTGIPNH----ICKICNKGYACAASLKIHNIKTHLQ 305
           + CD   C  ++  K  +  H +    I         + C K +     LK+H   +H  
Sbjct: 73  FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSH-- 129

Query: 306 FTGVPIEK-FKC--DLCDKEFFEKKKLNKHKNWAHGDKF---HLCKVCGAKIKGSLKQHM 359
            T    +  ++C  + CDK F    +L +H+    G        C   G      LK   
Sbjct: 130 -TQ---QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 185

Query: 360 ITHT 363
             H 
Sbjct: 186 ECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 26/111 (23%), Positives = 34/111 (30%), Gaps = 13/111 (11%)

Query: 47  CNKSYPGARNMRKHLRLVH--DKNSTTTCTM--CKKTFRNKATFQKHMQRAHVGLKISVS 102
           C+  +    NM+KH        K     C    C K F+     + H Q +H        
Sbjct: 80  CDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQ-----Q 132

Query: 103 KHFECN--YCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTH 151
             +EC    C  +FS  S L  H   H G    K   C            H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 183

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 60.1 bits (147), Expect = 8e-12
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
           C +C K F  K   + H  R H G      K ++C  C    ++ S L+ H+  H+  + 
Sbjct: 11  CEVCGKCFSRKDKLKTH-MRCHTG-----VKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64

Query: 133 YKCHVCDKAYSCRKALKTHTLLHEQEK 159
           +KC +C  A      L  H   H  + 
Sbjct: 65  FKCQICPYASRNSSQLTVHLRSHTGDS 91

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 52.4 bits (127), Expect = 4e-09
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKH 332
                 H C++C K ++    LK H ++ H   TG    K +KC  CD    +   LNKH
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTH-MRCH---TG---VKPYKCKTCDYAAADSSSLNKH 55

Query: 333 KNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
                 ++   C++C    +    L  H+ +HTG+     
Sbjct: 56  LRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 51.7 bits (125), Expect = 7e-09
 Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 35/129 (27%)

Query: 126 SHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIK 185
           S      +KC VC K +S +  LKTH   H   K  K                       
Sbjct: 2   SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK----------------------- 38

Query: 186 RRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
                C  C+    +  ++ KH  R+H+  R + C  C    ++   L  H +  H G  
Sbjct: 39  -----CKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQLTVHLRS-HTGDS 91

Query: 246 VKVKYEYEC 254
                    
Sbjct: 92  -----GPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
              +C  C   FS K  L  H+  HTG+K YKC  CD A +   +L  H  +H  E+
Sbjct: 7   GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCG--AKIKGSLKQHMITHTGERKY 368
               KC++C K F  K KL  H     G K + CK C   A    SL +H+  H+ ER +
Sbjct: 6   SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65

Query: 369 CCHICGK 375
            C IC  
Sbjct: 66  KCQICPY 72

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHI 271
             S   + C+ CGK    +D L TH +  H G K      Y+C  C     +  +L+ H+
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVK-----PYKCKTCDYAAADSSSLNKHL 56

Query: 272 SGHTGIPNHICKICNKGYACAASLKIH 298
             H+      C+IC      ++ L +H
Sbjct: 57  RIHSDERPFKCQICPYASRNSSQLTVH 83

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
           C  C + +     ++ H  R HT V+ Y C  C        SLN H +I H  ++     
Sbjct: 11  CEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDER----- 63

Query: 251 EYECDYCGAKYPNKYTLSDHISGHTG 276
            ++C  C     N   L+ H+  HTG
Sbjct: 64  PFKCQICPYASRNSSQLTVHLRSHTG 89

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
           C  C     + ++  KH  R H        + F+C  C     N S L+ H+ SHTG   
Sbjct: 39  CKTCDYAAADSSSLNKH-LRIHSD-----ERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92

Query: 133 YKC 135
              
Sbjct: 93  PSS 95

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 59.4 bits (145), Expect = 2e-11
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
           C  C + F        H +R H        + + C+ CH  F  +  L DH   H+  K 
Sbjct: 20  CKFCGRHFTKSYNLLIH-ERTHTD-----ERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73

Query: 133 YKCHVCDKAYSCRKALKTHTLLHEQEK 159
           +KC  C K +   + L  H  LH Q  
Sbjct: 74  FKCQECGKGFCQSRTLAVHKTLHMQTS 100

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 203 NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYP 262
                 R    + +++ C  CG+      +L  H++  H  ++      Y CD C   + 
Sbjct: 4   GSSGG-RLPSKTKKEFICKFCGRHFTKSYNLLIHERT-HTDER-----PYTCDICHKAFR 56

Query: 263 NKYTLSDHISGHTGIPNHICKICNKGYACAASLKIH 298
            +  L DH   H+      C+ C KG+  + +L +H
Sbjct: 57  RQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 83  KATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAY 142
            +      +           K F C +C   F+    L  H  +HT  + Y C +C KA+
Sbjct: 2   SSGSSGG-RLPSKT-----KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF 55

Query: 143 SCRKALKTHTLLHEQEK 159
             +  L+ H  +H +EK
Sbjct: 56  RRQDHLRDHRYIHSKEK 72

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 47.0 bits (113), Expect = 4e-07
 Identities = 29/140 (20%), Positives = 42/140 (30%), Gaps = 40/140 (28%)

Query: 232 SLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYAC 291
             +  +    + KK     E+ C +CG  +   Y L  H   HT    + C IC+K +  
Sbjct: 4   GSSGGRLP-SKTKK-----EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR 57

Query: 292 AASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAK 350
              L+ H    H   +    EK FKC  C K F +                         
Sbjct: 58  QDHLRDHR-YIH---SK---EKPFKCQECGKGFCQS------------------------ 86

Query: 351 IKGSLKQHMITHTGERKYCC 370
              +L  H   H        
Sbjct: 87  --RTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 46.3 bits (111), Expect = 8e-07
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKY 368
           +K F C  C + F +   L  H+     ++ + C +C    + +  L+ H   H+ E+ +
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74

Query: 369 CCHICGK 375
            C  CGK
Sbjct: 75  KCQECGK 81

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 45.9 bits (110), Expect = 9e-07
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
           C  C R +    N+  H  R HT  R Y CD C K  + +D L  H+ I H  +K     
Sbjct: 20  CKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEK----- 72

Query: 251 EYECDYCGAKYPNKYTLSDHISGHTG 276
            ++C  CG  +    TL+ H + H  
Sbjct: 73  PFKCQECGKGFCQSRTLAVHKTLHMQ 98

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 72  TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK 131
           TC +C K FR +   + H +  H        K F+C  C   F     L+ H + H    
Sbjct: 47  TCDICHKAFRRQDHLRDH-RYIHSK-----EKPFKCQECGKGFCQSRTLAVHKTLHMQTS 100

Query: 132 NYKC 135
           +   
Sbjct: 101 SPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 37.8 bits (89), Expect = 7e-04
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 329 LNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK 375
            +  +  +   K  +CK CG       +L  H  THT ER Y C IC K
Sbjct: 5   SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHK 53

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 56.7 bits (138), Expect = 9e-11
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
           C +C K+F+  +T   H    H       ++ + C YC  +F  KS +  H   HTG K 
Sbjct: 4   CKICGKSFKRSSTLSTH-LLIHSD-----TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57

Query: 133 YKCHVCDKAYSCRKALKTHTLLH 155
           +KC VC KA+S    L TH+  H
Sbjct: 58  HKCQVCGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 105 FECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
           F+C  C   F   S LS H+  H+  + Y C  C K +  +  +K HT +H  EK
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 46.6 bits (112), Expect = 4e-07
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 218 YGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGI 277
           + C  CGK  K   +L+TH  I H   +      Y C YCG ++  K  +  H   HTG 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLI-HSDTR-----PYPCQYCGKRFHQKSDMKKHTFIHTGE 55

Query: 278 PNHICKICNKGYACAASLKIH 298
             H C++C K ++ +++L  H
Sbjct: 56  KPHKCQVCGKAFSQSSNLITH 76

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 45.9 bits (110), Expect = 6e-07
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 314 FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCH 371
           F C +C K F     L+ H       + + C+ CG     K  +K+H   HTGE+ + C 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61

Query: 372 ICGK 375
           +CGK
Sbjct: 62  VCGK 65

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
           C  C + ++    +  H   +H+  R Y C  CGK    +  +  H  I H G+K     
Sbjct: 4   CKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEK----- 56

Query: 251 EYECDYCGAKYPNKYTLSDHISGHTG 276
            ++C  CG  +     L  H   HTG
Sbjct: 57  PHKCQVCGKAFSQSSNLITHSRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 29/107 (27%)

Query: 133 YKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCP 192
           + C +C K++     L TH L+H   +                               C 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYP----------------------------CQ 33

Query: 193 KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
            C + +    +M+KH   +HT  + + C  CGK      +L TH + 
Sbjct: 34  YCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 282 CKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDK 340
           CKIC K +  +++L  H    H   +     + + C  C K F +K  + KH     G+K
Sbjct: 4   CKICGKSFKRSSTLSTHL-LIH---SD---TRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56

Query: 341 FHLCKVCGA--KIKGSLKQHMITHTG 364
            H C+VCG       +L  H   HTG
Sbjct: 57  PHKCQVCGKAFSQSSNLITHSRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 37.0 bits (87), Expect = 7e-04
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTG 129
           C  C K F  K+  +KH    H G      K  +C  C   FS  S L  H   HTG
Sbjct: 32  CQYCGKRFHQKSDMKKH-TFIHTG-----EKPHKCQVCGKAFSQSSNLITHSRKHTG 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 56.7 bits (138), Expect = 1e-10
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
           C + F    +  +H+ R H G      K F+C  C   FS    L+ HI +HTG K + C
Sbjct: 12  CDRRFSQSGSLTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65

Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
            +C + ++     K HT +H ++K
Sbjct: 66  DICGRKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 311 IEK-FKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAK--IKGSLKQHMITHTGE 365
           +E+ + C +  CD+ F +   L +H     G K   C++C         L  H+ THTGE
Sbjct: 1   MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60

Query: 366 RKYCCHICGKK--LRGKLKEHM 385
           + + C ICG+K     + K H 
Sbjct: 61  KPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 285 CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHL 343
           C++ ++ + SL  H I+ H   TG   +K F+C +C + F     L  H     G+K   
Sbjct: 12  CDRRFSQSGSLTRH-IRIH---TG---QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 344 CKVCGAKI--KGSLKQHMITHTGER 366
           C +CG K       K+H   H  ++
Sbjct: 65  CDICGRKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 194 CNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYE 253
           C+R +    ++ +H  R+HT  + + C  C +     D L TH +  H G+K      + 
Sbjct: 12  CDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK-----PFA 64

Query: 254 CDYCGAKYPNKYTLSDHISGHTG 276
           CD CG K+        H   H  
Sbjct: 65  CDICGRKFARSDERKRHTKIHLR 87

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 218 YGC--DECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHT 275
           Y C  + C +      SL  H +I H G+K      ++C  C   +     L+ HI  HT
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIRTHT 58

Query: 276 GIPNHICKICNKGYACAASLKIHNIKTH 303
           G     C IC + +A +   K H  K H
Sbjct: 59  GEKPFACDICGRKFARSDERKRH-TKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 32/117 (27%)

Query: 131 KNYKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRV 188
           + Y C V  CD+ +S   +L  H  +H  +K  +                          
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ-------------------------- 36

Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
             C  C R++    ++  H  R HT  + + CD CG+     D    H KI H  +K
Sbjct: 37  --CRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHTKI-HLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 43  TCPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKIS 100
            CP+  C++ +  + ++ +H+R +H       C +C + F        H+ R H G    
Sbjct: 6   ACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG---- 59

Query: 101 VSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
             K F C+ C  KF+       H   H   K+
Sbjct: 60  -EKPFACDICGRKFARSDERKRHTKIHLRQKD 90

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 72  TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTG-- 129
            C +C K FR+     +H + +H G      K + C  C  +F  K  +S H+ SH G  
Sbjct: 9   ACEICGKIFRDVYHLNRH-KLSHSG-----EKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62

Query: 130 LKNYKCHVCDKAYSCRKALKTH 151
            K Y C  C K +S    L  H
Sbjct: 63  GKPYICQSCGKGFSRPDHLNGH 84

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHI 271
            +      C+ CGK+ +    LN HK   H G+K      Y C  CG ++  K  +S H+
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLS-HSGEK-----PYSCPVCGLRFKRKDRMSYHV 55

Query: 272 SGHTGIPN--HICKICNKGYACAASLKIHNIKTH 303
             H G     +IC+ C KG++    L  H  + H
Sbjct: 56  RSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 29/121 (23%), Positives = 35/121 (28%), Gaps = 31/121 (25%)

Query: 127 HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKR 186
            +G     C +C K +     L  H L H  EK                           
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYS------------------------ 37

Query: 187 RVTVCPKCNRDYRNPRNMRKHLRRVHT--SVRKYGCDECGKMLKSRDSLNTHKKIQHEGK 244
               CP C   ++    M  H  R H     + Y C  CGK     D LN H K  H G 
Sbjct: 38  ----CPVCGLRFKRKDRMSYH-VRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92

Query: 245 K 245
            
Sbjct: 93  S 93

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 26/111 (23%)

Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
               C  C   F +   L+ H  SH+G K Y C VC   +  +  +  H   H+      
Sbjct: 6   SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS---- 61

Query: 163 SSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHT 213
              K +I                     C  C + +  P ++  H+++VH+
Sbjct: 62  -VGKPYI---------------------CQSCGKGFSRPDHLNGHIKQVHS 90

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERK- 367
                C++C K F +   LN+HK    G+K + C VCG   K K  +  H+ +H G    
Sbjct: 5   SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64

Query: 368 -YCCHICGK--KLRGKLKEHM 385
            Y C  CGK       L  H+
Sbjct: 65  PYICQSCGKGFSRPDHLNGHI 85

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
           C  C + +R+  ++ +H +  H+  + Y C  CG   K +D ++ H +  H+G   K   
Sbjct: 10  CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGK--- 64

Query: 251 EYECDYCGAKYPNKYTLSDHISG-HTG 276
            Y C  CG  +     L+ HI   H+G
Sbjct: 65  PYICQSCGKGFSRPDHLNGHIKQVHSG 91

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 252 YECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPI 311
             C+ CG  + + Y L+ H   H+G   + C +C   +     +  H +++H    G   
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSH---DGSVG 63

Query: 312 EKFKCDLCDKEFFEKKKLNKHKNWAH 337
           + + C  C K F     LN H    H
Sbjct: 64  KPYICQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 336 AH-GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK--KLRGKLKEHM 385
              G     C++CG   +    L +H ++H+GE+ Y C +CG   K + ++  H+
Sbjct: 1   GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV 55

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 54.5 bits (132), Expect = 5e-10
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 72  TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK 131
            C+ C KTFR K     H  + +      V   F C+ C   F+ ++ ++ H  +  G  
Sbjct: 17  ACSHCDKTFRQKQLLDMH-FKRYHD-PNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74

Query: 132 NYKCHVCDKAY 142
             +      + 
Sbjct: 75  GVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 16/90 (17%)

Query: 294 SLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHL----CKVCG 348
           S      +TH   TG   EK + C  CDK F +K+ L+ H    H   F      C  CG
Sbjct: 2   SSGSSG-RTH---TG---EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCG 54

Query: 349 AKI---KGSLKQHMITHTGERKYCCHICGK 375
            K    + ++ +H     G         G 
Sbjct: 55  -KTFTRRNTMARHADNCAGPDGVEGENSGP 83

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 203 NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYP 262
           +      R HT  + Y C  C K  + +  L+ H K  +          + C  CG  + 
Sbjct: 2   SSGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMHFKR-YHDPNFVPA-AFVCSKCGKTFT 58

Query: 263 NKYTLSDHISGHTGIPNHICKICNK 287
            + T++ H     G      +    
Sbjct: 59  RRNTMARHADNCAGPDGVEGENSGP 83

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 46.0 bits (110), Expect = 6e-07
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTG----LKNYKCHVCDKAYSCRK 146
            R H G      K + C++C   F  K LL  H   +         + C  C K ++ R 
Sbjct: 7   GRTHTG-----EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61

Query: 147 ALKTHTLLHEQEK 159
            +  H        
Sbjct: 62  TMARHADNCAGPD 74

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 19/106 (17%), Positives = 28/106 (26%), Gaps = 25/106 (23%)

Query: 120 LSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDE 179
                 +HTG K Y C  CDK +  ++ L  H   +            F           
Sbjct: 3   SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP---NFVPAAF----------- 48

Query: 180 WNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGK 225
                     VC KC + +     M +H             +  G 
Sbjct: 49  ----------VCSKCGKTFTRRNTMARH-ADNCAGPDGVEGENSGP 83

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 55.1 bits (134), Expect = 7e-10
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
           C K+F +K+   +H    H+GL+      + C  C  KF  K  L  H+  HTG+K Y+C
Sbjct: 15  CGKSFTHKSQRDRH-MSMHLGLR-----PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68

Query: 136 HVCDKAYSCRKAL--KTHT 152
           ++C K +  R +      +
Sbjct: 69  NICAKRFMWRDSFHRHVTS 87

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 52.8 bits (128), Expect = 4e-09
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
           C +C K F+ K     H  + H G      K +ECN C  +F  +     H+   +  K+
Sbjct: 40  CGVCGKKFKMKHHLVGH-MKIHTG-----IKPYECNICAKRFMWRDSFHRHV--TSCTKS 91

Query: 133 YKCHVCDKAYSCRKALKT 150
           Y+    ++  +      +
Sbjct: 92  YEAAKAEQNTTEASGPSS 109

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 50.5 bits (122), Expect = 3e-08
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 34/134 (25%)

Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
           K + C  C   F++KS    H+S H GL+ Y C VC K +  +  L  H  +H   K  +
Sbjct: 9   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67

Query: 163 SSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHL-RRVHTSVRKYGCD 221
                                       C  C + +      R    R V +  + Y   
Sbjct: 68  ----------------------------CNICAKRFMW----RDSFHRHVTSCTKSYEAA 95

Query: 222 ECGKMLKSRDSLNT 235
           +  +        ++
Sbjct: 96  KAEQNTTEASGPSS 109

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 49.7 bits (120), Expect = 5e-08
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 21/124 (16%)

Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSD 269
              +  + Y C +CGK    +   + H  + H G +      Y C  CG K+  K+ L  
Sbjct: 3   SGSSGDKLYPC-QCGKSFTHKSQRDRHMSM-HLGLR-----PYGCGVCGKKFKMKHHLVG 55

Query: 270 HISGHTGIPNHICKICNKGYACAASL--KIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEK 326
           H+  HTGI  + C IC K +    S    +         +     K ++    ++   E 
Sbjct: 56  HMKIHTGIKPYECNICAKRFMWRDSFHRHVT--------SC---TKSYEAAKAEQNTTEA 104

Query: 327 KKLN 330
              +
Sbjct: 105 SGPS 108

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLS 268
             +H  +R YGC  CGK  K +  L  H KI H G K      YEC+ C  ++  + +  
Sbjct: 29  MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIK-----PYECNICAKRFMWRDSFH 82

Query: 269 DHISGHTGIPNHICKICNKGYACAASL 295
            H+   +   ++      +    A+  
Sbjct: 83  RHV--TSCTKSYEAAKAEQNTTEASGP 107

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 46.7 bits (112), Expect = 6e-07
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKY 368
           +K + C  C K F  K + ++H +   G + + C VCG   K+K  L  HM  HTG + Y
Sbjct: 8   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66

Query: 369 CCHICGK 375
            C+IC K
Sbjct: 67  ECNICAK 73

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 13/107 (12%)

Query: 272 SGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLN 330
           SG +G   + C+ C K +   +    H    H    G    + + C +C K+F  K  L 
Sbjct: 3   SGSSGDKLYPCQ-CGKSFTHKSQRDRHM-SMH---LG---LRPYGCGVCGKKFKMKHHLV 54

Query: 331 KHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK 375
            H     G K + C +C      + S  +H+   +  + Y      +
Sbjct: 55  GHMKIHTGIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQ 99

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 53.7 bits (130), Expect = 3e-09
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 14/126 (11%)

Query: 40  KTKTCPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGL 97
           +T  CP   C K +     MRKHL     +     C  C K F   +  ++H    H G 
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKHLHTHGPR--VHVCAECGKAFVESSKLKRHQ-LVHTG- 59

Query: 98  KISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTHTL 153
                K F+C +  C  +FS    L  H+  HTG + Y C    C+K ++    LK+H L
Sbjct: 60  ----EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115

Query: 154 LHEQEK 159
            H + K
Sbjct: 116 THAKAK 121

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 312 EK-FKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGER 366
            +   C    C K F +   + KH    HG + H+C  CG        LK+H + HTGE+
Sbjct: 3   PRTIACPHKGCTKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61

Query: 367 KYCCHI--CGK--KLRGKLKEHM 385
            + C    CGK   L   L+ H+
Sbjct: 62  PFQCTFEGCGKRFSLDFNLRTHV 84

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 17/113 (15%)

Query: 282 CKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDK 340
            K C K +   ++++ H + TH    G    +   C  C K F E  KL +H+    G+K
Sbjct: 10  HKGCTKMFRDNSAMRKH-LHTH----G---PRVHVCAECGKAFVESSKLKRHQLVHTGEK 61

Query: 341 FHLCKV--CGA--KIKGSLKQHMITHTGERKYCCHI--CGKKLR--GKLKEHM 385
              C    CG    +  +L+ H+  HTG+R Y C    C KK      LK H+
Sbjct: 62  PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 47.5 bits (114), Expect = 4e-07
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 47/158 (29%)

Query: 218 YGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHT 275
             C    C KM +   ++  H    H G +V     + C  CG  +     L  H   HT
Sbjct: 6   IACPHKGCTKMFRDNSAMRKHLHT-H-GPRV-----HVCAECGKAFVESSKLKRHQLVHT 58

Query: 276 GIPNHICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDL--CDKEFFEKKKLN 330
           G     C    C K ++   +L+ H ++ H   TG   ++ + C    C+K+F +     
Sbjct: 59  GEKPFQCTFEGCGKRFSLDFNLRTH-VRIH---TG---DRPYVCPFDGCNKKFAQS---- 107

Query: 331 KHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKY 368
                                  +LK H++TH   +  
Sbjct: 108 ----------------------TNLKSHILTHAKAKNN 123

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 13/117 (11%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
              C + +R+   MRKHL   H   R + C ECGK       L  H+ + H G+K     
Sbjct: 10  HKGCTKMFRDNSAMRKHLH-THGP-RVHVCAECGKAFVESSKLKRHQLV-HTGEK----- 61

Query: 251 EYECDY--CGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKIHNIKTH 303
            ++C +  CG ++   + L  H+  HTG   ++C    CNK +A + +LK H I TH
Sbjct: 62  PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH-ILTH 117

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 53.7 bits (130), Expect = 3e-09
 Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 16/110 (14%)

Query: 285 CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDL--CDKEFFEKKKLNKHKNWAHGDKF 341
           CNK Y   + L++H  + H   TG   EK ++CD   C++ F    +L +H+    G K 
Sbjct: 14  CNKRYFKLSHLQMH-SRKH---TG---EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66

Query: 342 HLCKVCGAKI--KGSLKQHMITHTGERKYCCHI--CGKK--LRGKLKEHM 385
             CK C  K      LK H  THTGE+ + C    C KK     +L  H 
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNY 133
           C K +   +  Q H  R H G      K ++C++  C  +FS    L  H   HTG+K +
Sbjct: 14  CNKRYFKLSHLQMHS-RKHTG-----EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67

Query: 134 KCHVCDKAYSCRKALKTHTLLHEQEK 159
           +C  C + +S    LKTHT  H  EK
Sbjct: 68  QCKTCQRKFSRSDHLKTHTRTHTGEK 93

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 11/111 (9%)

Query: 45  PICNKSYPGARNMRKHLRLVH--DKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
           P CNK Y    +++ H R  H  +K        C++ F      ++H  R H G      
Sbjct: 12  PGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQ-RRHTG-----V 64

Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTH 151
           K F+C  C  KFS    L  H  +HTG K + C    C K ++    L  H
Sbjct: 65  KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 12/116 (10%)

Query: 192 PKCNRDYRNPRNMRKHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVK 249
           P CN+ Y    +++ H  R HT  + Y CD  +C +     D L  H++  H G K    
Sbjct: 12  PGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVK---- 65

Query: 250 YEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKIHNIKTH 303
             ++C  C  K+     L  H   HTG     C+   C K +A +  L  H    H
Sbjct: 66  -PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH-HNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 44.0 bits (105), Expect = 5e-06
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 312 EK-FKCD--LCDKEFFEKKKLNKHKNWAHGDKFHLCKV--CGAK--IKGSLKQHMITHTG 364
           ++ F C    C+K +F+   L  H     G+K + C    C  +      LK+H   HTG
Sbjct: 4   KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63

Query: 365 ERKYCCHICGKK--LRGKLKEHM 385
            + + C  C +K      LK H 
Sbjct: 64  VKPFQCKTCQRKFSRSDHLKTHT 86

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 37/151 (24%)

Query: 128 TGLKNYKC--HVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIK 185
           +  + + C    C+K Y     L+ H+  H  EK  +            C   +      
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQ------------CDFKD------ 43

Query: 186 RRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
                   C R +     +++H +R HT V+ + C  C +     D L TH +  H G+K
Sbjct: 44  --------CERRFSRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEK 93

Query: 246 VKVKYEYECDY--CGAKYPNKYTLSDHISGH 274
                 + C +  C  K+     L  H + H
Sbjct: 94  -----PFSCRWPSCQKKFARSDELVRHHNMH 119

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 51.7 bits (125), Expect = 5e-09
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKT 150
                       K ++C+ C A F  K  L+ H + HTG K Y+C++C   ++    LKT
Sbjct: 9   SHMTHS-----DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63

Query: 151 HTLLHEQEK 159
           HT +H  EK
Sbjct: 64  HTRIHSGEK 72

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSD 269
            +  S + Y CD C    + + +L +HK + H G+K      Y C+ CGA++     L  
Sbjct: 10  HMTHSDKPYKCDRCQASFRYKGNLASHKTV-HTGEK-----PYRCNICGAQFNRPANLKT 63

Query: 270 HISGHTG 276
           H   H+G
Sbjct: 64  HTRIHSG 70

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKY 368
           +K +KCD C   F  K  L  HK    G+K + C +CGA      +LK H   H+GE+ Y
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 329 LNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK 375
            + H +  H DK + C  C A  + KG+L  H   HTGE+ Y C+ICG 
Sbjct: 5   HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGA 53

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
           C  C+ +FR K     H +  H G      K + CN C A+F+  + L  H   H+G K 
Sbjct: 20  CDRCQASFRYKGNLASH-KTVHTG-----EKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73

Query: 133 Y 133
           Y
Sbjct: 74  Y 74

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 51.3 bits (124), Expect = 8e-09
 Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 7/80 (8%)

Query: 72  TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK 131
            C +C + F        H+ R H G      K F C+ C  KF+       H        
Sbjct: 5   QCRICMRNFSRSDHLTTHI-RTHTG-----EKPFACDICGRKFARSDERKRHRDIQHI-L 57

Query: 132 NYKCHVCDKAYSCRKALKTH 151
                  ++  S    L+  
Sbjct: 58  PILEDKVEELLSKNYHLENE 77

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 45.6 bits (109), Expect = 9e-07
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
           K F+C  C   FS    L+ HI +HTG K + C +C + ++     K H  + 
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 14/91 (15%)

Query: 282 CKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDK 340
           C+IC + ++ +  L  H I+TH   TG   EK F CD+C ++F    +  +H++      
Sbjct: 6   CRICMRNFSRSDHLTTH-IRTH---TG---EKPFACDICGRKFARSDERKRHRD-IQHIL 57

Query: 341 FHLCKVCGAKI--KGSLKQHMI---THTGER 366
             L       +     L+  +       GER
Sbjct: 58  PILEDKVEELLSKNYHLENEVARLKKLVGER 88

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
           C  C R++    ++  H  R HT  + + CD CG+     D    H+ IQH         
Sbjct: 6   CRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LP----- 58

Query: 251 EYECDYCGAKYPNKYTLSDHISG---HTG 276
               D         Y L + ++      G
Sbjct: 59  -ILEDKVEELLSKNYHLENEVARLKKLVG 86

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 215 VRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGH 274
           ++ + C  C +     D L TH +  H G+K      + CD CG K+        H    
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTHIRT-HTGEK-----PFACDICGRKFARSDERKRHRDIQ 54

Query: 275 TGIPNHICKICNKGYACAASLKIHN--IKTH 303
             +P  +     +  +    L+     +K  
Sbjct: 55  HILP-ILEDKVEELLSKNYHLENEVARLKKL 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 314 FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAK--IKGSLKQHMITHTGERKYCCH 371
           F+C +C + F     L  H     G+K   C +CG K       K+H             
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILED 62

Query: 372 ICGKKLR--GKLKEHM 385
              + L     L+  +
Sbjct: 63  KVEELLSKNYHLENEV 78

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 32/118 (27%)

Query: 130 LKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVT 189
           +K ++C +C + +S    L TH   H  EK                              
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA--------------------------- 33

Query: 190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQ--HEGKK 245
            C  C R +      ++H R +         D+  ++L     L           G++
Sbjct: 34  -CDICGRKFARSDERKRH-RDIQHI-LPILEDKVEELLSKNYHLENEVARLKKLVGER 88

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 50.9 bits (122), Expect = 9e-09
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 273 GHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNK 331
           G +G     C+IC       ASL  H  + H           F C+ C K F +   +  
Sbjct: 1   GSSGSSGLQCEICGFTCRQKASLNWH-QRKH---AETVAALRFPCEFCGKRFEKPDSVAA 56

Query: 332 HKNWAHGDKFHLCKVCGAKIKG 353
           H++ +H       +       G
Sbjct: 57  HRSKSHPALLLAPQESSGPSSG 78

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 103 KHFECNYCHAKFSNKSLLSDHISSHT---GLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
              +C  C      K+ L+ H   H        + C  C K +    ++  H        
Sbjct: 6   SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65

Query: 160 VIKSSKK 166
           ++   + 
Sbjct: 66  LLAPQES 72

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHT---GERKYCCHICGKKLRGK--LKEHM 385
           G     C++CG   + K SL  H   H       ++ C  CGK+      +  H 
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 72  TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK 131
            C +C  T R KA+   H  R H       +  F C +C  +F     ++ H S      
Sbjct: 9   QCEICGFTCRQKASLNWHQ-RKHAETV--AALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65

Query: 132 NYKCHVCDK 140
                    
Sbjct: 66  LLAPQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSV---RKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
           C  C    R   ++  H +R H       ++ C+ CGK  +  DS+  H+   H    
Sbjct: 10  CEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHI 271
            +      C+ CG   + + SLN H++   E         + C++CG ++    +++ H 
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAAL---RFPCEFCGKRFEKPDSVAAHR 58

Query: 272 SGHTGIPNHICK 283
           S          +
Sbjct: 59  SKSHPALLLAPQ 70

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 25/99 (25%)

Query: 127 HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKR 186
            +G    +C +C      + +L  H   H +                             
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFP--------------------- 40

Query: 187 RVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGK 225
               C  C + +  P ++  H  + H ++     +  G 
Sbjct: 41  ----CEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGP 75

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 314 FKCDL--CDKEFFEKKKLNKHKNWAH-GDKFHLCK--VCGA--KIKGSLKQHMITHTGER 366
             CD   C + F  ++ LN HK + H   K   C    CG     K  LK+HM  H+  R
Sbjct: 8   MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67

Query: 367 KYCCHICGK 375
            Y C   G 
Sbjct: 68  DYICEFSGP 76

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 72  TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTG 129
               C + F N+     H +  H+       K F C    C   F+ K  L +H+  H+ 
Sbjct: 11  DFPGCGRIFSNRQYLNHHKKYQHIH-----QKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65

Query: 130 LKNYKCHVCDKAY 142
            ++Y C     + 
Sbjct: 66  TRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 212 HTSVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGAKYPNKYTL 267
            +      CD   CG++  +R  LN HKK QH  +K      + C    CG  +  K  L
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK-----SFSCPEPACGKSFNFKKHL 56

Query: 268 SDHISGHTGIPNHICKICNKGY 289
            +H+  H+   ++IC+      
Sbjct: 57  KEHMKLHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDE--CGKMLKSRDSLNTHKKIQHEGKKVKV 248
            P C R + N + +  H +  H   + + C E  CGK    +  L  H K+ H   +   
Sbjct: 12  FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HSDTR--- 67

Query: 249 KYEYECDYCG 258
             +Y C++ G
Sbjct: 68  --DYICEFSG 75

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 103 KHFECNY--CHAKFSNKSLLSDHI-SSHTGLKNYKC--HVCDKAYSCRKALKTHTLLHEQ 157
               C++  C   FSN+  L+ H    H   K++ C    C K+++ +K LK H  LH  
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65

Query: 158 EK 159
            +
Sbjct: 66  TR 67

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKT 150
              H G      K + C  C   FS  S+L  H   HTG K YKC  C KA+S    L  
Sbjct: 6   SGIHSG-----EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60

Query: 151 HTLLHEQEK 159
           H  +H    
Sbjct: 61  HQRIHTSGP 69

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 42.8 bits (102), Expect = 5e-06
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLS 268
             +H+  + YGC ECGK       L  H+++ H G+K      Y+C  CG  +     L 
Sbjct: 6   SGIHSGEKPYGCVECGKAFSRSSILVQHQRV-HTGEK-----PYKCLECGKAFSQNSGLI 59

Query: 269 DHISGHTG 276
           +H   HT 
Sbjct: 60  NHQRIHTS 67

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 39.8 bits (94), Expect = 8e-05
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
           C  C K F   +   +H QR H G      K ++C  C   FS  S L +H   HT   +
Sbjct: 17  CVECGKAFSRSSILVQH-QRVHTG-----EKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70

Query: 133 Y 133
            
Sbjct: 71  S 71

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
           C +C + +     + +H +RVHT  + Y C ECGK       L  H++I H    
Sbjct: 17  CVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HTSGP 69

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 14/62 (22%), Positives = 22/62 (35%)

Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
              +C+ C    S+K+ L  H   H   + +KC+ C         L  H      +    
Sbjct: 8   HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67

Query: 163 SS 164
           SS
Sbjct: 68  SS 69

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSD 269
              +S     C EC     S+ +L  H++I H   +      ++C+YC         LS 
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERI-HCTDR-----PFKCNYCSFDTKQPSNLSK 55

Query: 270 HISGHTG 276
           H+    G
Sbjct: 56  HMKKFHG 62

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
           C+ C  +  +KA  + H  R H        + F+CNYC       S LS H+    G  +
Sbjct: 12  CSECSYSCSSKAALRIHE-RIHCT-----DRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS 65

Query: 133 YKC 135
              
Sbjct: 66  GPS 68

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 338 GDKFHLCKVCG--AKIKGSLKQHMITHTGERKYCCHICGK--KLRGKLKEHM 385
                 C  C      K +L+ H   H  +R + C+ C    K    L +HM
Sbjct: 6   SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 64  VHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS---KHFECNYCHAKFSNKSLL 120
           + +   +     C +TF        H+   HVG     +      EC      F  K  L
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 121 SDHISSHTGLKNYKC 135
            +HI  HTG K+   
Sbjct: 79  VNHIRVHTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 211 VHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYE---YECDYCGAKYPNKYTL 267
           +  +        C +   +   L TH  ++H G   +  +     EC   G  +  KY L
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 268 SDHISGHTGIPNHIC 282
            +HI  HTG  +   
Sbjct: 79  VNHIRVHTGEKSGPS 93

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKT 150
           +           + ++C+ C   FS+ S LS H  +HTG K YKC  C KA+  R  L  
Sbjct: 10  EWQQRE-----RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64

Query: 151 HTLLHEQEK 159
           H  +H    
Sbjct: 65  HHRVHTGSG 73

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 203 NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYP 262
           +  +         R+Y CDECGK       L+ H++  H G+K      Y+CD CG  + 
Sbjct: 5   SSGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTGEK-----PYKCDECGKAFI 57

Query: 263 NKYTLSDHISGHTG 276
            +  L  H   HTG
Sbjct: 58  QRSHLIGHHRVHTG 71

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 73  CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
           C  C K+F + +   KH +R H G      K ++C+ C   F  +S L  H   HTG   
Sbjct: 21  CDECGKSFSHSSDLSKH-RRTHTG-----EKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74

Query: 133 YK 134
             
Sbjct: 75  SS 76

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 85  TFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTG--LKNYKCHVCDKAY 142
           +      R H G      K +EC  CHA+F+    +  HI       +  + C  CD   
Sbjct: 2   SSGSSG-RTHSG-----EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55

Query: 143 SCRKALKTH 151
           + +  L  H
Sbjct: 56  ARKSDLGVH 64

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 203 NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYP 262
           +      R H+  + Y C  C        ++  H       + V     + C +C     
Sbjct: 2   SSGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQ-KHTENVAK---FHCPHCDTVIA 56

Query: 263 NKYTLSDHI-SGHTG 276
            K  L  H+   H+ 
Sbjct: 57  RKSDLGVHLRKQHSY 71

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 30/96 (31%)

Query: 120 LSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH--EQEKVIKSSKKEFIIDTGDCTL 177
                 +H+G K Y+C++C   ++    +K H L    E                     
Sbjct: 3   SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFH--------------- 47

Query: 178 DEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHT 213
                        CP C+       ++  HLR+ H+
Sbjct: 48  -------------CPHCDTVIARKSDLGVHLRKQHS 70

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.5 bits (101), Expect = 9e-06
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 353 GSLKQHMITHTGERKYCCHICGKKL--RGKLKEHM 385
           GS      TH+GE+ Y C+IC  +    G +K H+
Sbjct: 1   GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 266 TLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFE 325
           +       H+G   + C IC+  +  + ++K+H I          + KF C  CD     
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMH-ILQK---HTENVAKFHCPHCDTVIAR 57

Query: 326 KKKLNKHKNWAH-GDK 340
           K  L  H    H    
Sbjct: 58  KSDLGVHLRKQHSYSG 73

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 338 GDKFHLCKVCGAK--IKGSLKQHMITHTGE--RKYCCHICGKKL--RGKLKEHM 385
           G+K + C +C A+    G++K H++    E   K+ C  C   +  +  L  H+
Sbjct: 12  GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHT--SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
           C  C+  +     M+ H        +V K+ C  C  ++  +  L  H + QH    
Sbjct: 18  CYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 47.9 bits (115), Expect = 7e-08
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 90  MQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDH--ISSHTGLKNYKCHVCDKAYSCRKA 147
           M+    G        + C  C   +++ S    H   S    +K Y C  C K ++ +  
Sbjct: 1   MEFTKEG-----EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDN 55

Query: 148 LKTHTLLHEQ 157
           +  H  +  +
Sbjct: 56  MTAHVKIIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.5 bits (101), Expect = 6e-06
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 191 CPKCNRDYRNPRNMRKHLR-RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHE 242
           C  C+R Y +  N  +H       +V+ Y C  C K    +D++  H KI H+
Sbjct: 13  CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 208 LRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI-QHEGKKVKVKYEYECDYCGAKYPNKYT 266
           +         Y C  C ++     +   H         KV     Y C +C  ++  K  
Sbjct: 1   MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-----YPCPFCFKEFTRKDN 55

Query: 267 LSDHISGHTGI 277
           ++ H+     I
Sbjct: 56  MTAHVKIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 72  TCTMCKKTFRNKATFQKHMQ-RAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGL 130
            C +C + + + + F +H              K + C +C  +F+ K  ++ H+     +
Sbjct: 12  RCKVCSRVYTHISNFCRHYVTSHKRN-----VKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 338 GDKFHLCKVCGA--KIKGSLKQHMIT--HTGERKYCCHICGKKL--RGKLKEHM 385
           G+  + CKVC        +  +H +T      + Y C  C K+   +  +  H+
Sbjct: 7   GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)

Query: 76  CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNY 133
           C K +   +  + H+ R H G      K ++C +  C  +F+    L+ H   HTG K +
Sbjct: 23  CTKVYTKSSHLKAHL-RTHTG-----EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF 76

Query: 134 KCHVCDKAYSCRKALKTHTLLHE 156
           +C VC++++S    L  H   H+
Sbjct: 77  QCGVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 319 CDKEFFEKKKLNKHKNWAHGDKFHLC--KVCGAKIKGS--LKQHMITHTGERKYCCHICG 374
           C K + +   L  H     G+K + C  + C  +   S  L +H   HTG + + C +C 
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82

Query: 375 KKL--RGKLKEHM 385
           +       L  HM
Sbjct: 83  RSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 280 HICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDL--CDKEFFEKKKLNKHKN 334
           H C    C K Y  ++ LK H ++TH   TG   EK +KC    CD  F    +L +H  
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAH-LRTH---TG---EKPYKCTWEGCDWRFARSDELTRHYR 68

Query: 335 WAHGDKFHLCKVCGAKI--KGSLKQHMITHT 363
              G K   C VC         L  HM  H 
Sbjct: 69  KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 24/128 (18%), Positives = 35/128 (27%), Gaps = 31/128 (24%)

Query: 112 AKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIID 171
               +     +    H          C K Y+    LK H   H  EK  K         
Sbjct: 1   GSSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYK--------- 47

Query: 172 TGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRD 231
              CT +               C+  +     + +H  R HT  + + C  C +     D
Sbjct: 48  ---CTWEG--------------CDWRFARSDELTRH-YRKHTGAKPFQCGVCNRSFSRSD 89

Query: 232 SLNTHKKI 239
            L  H K 
Sbjct: 90  HLALHMKR 97

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 181 NDFIKRRVTVCPK--CNRDYRNPRNMRKHLRRVHTSVRKYGC--DECGKMLKSRDSLNTH 236
            D  KRR+  C    C + Y    +++ HLR  HT  + Y C  + C       D L  H
Sbjct: 8   PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRH 66

Query: 237 KKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHT 275
            +  H G K      ++C  C   +     L+ H+  H 
Sbjct: 67  YRK-HTGAK-----PFQCGVCNRSFSRSDHLALHMKRHQ 99

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 72  TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTG 129
               C KT+   +  + H  R H G      K + C++  C  KF+    L+ H   HTG
Sbjct: 9   DYAGCGKTYTKSSHLKAH-LRTHTG-----EKPYHCDWDGCGWKFARSDELTRHYRKHTG 62

Query: 130 LKNYKCHVCDKAYSCRKALKTHTLLH 155
            + ++C  CD+A+S    L  H   H
Sbjct: 63  HRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV--CGAKIKGS--LKQHMITHTGERKY 368
                 C K + +   L  H     G+K + C    CG K   S  L +H   HTG R +
Sbjct: 7   TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66

Query: 369 CCHICGKK 376
            C  C + 
Sbjct: 67  QCQKCDRA 74

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGAKYPNKYTLSD 269
            T+        CGK       L  H +  H G+K      Y CD+  CG K+     L+ 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEK-----PYHCDWDGCGWKFARSDELTR 55

Query: 270 HISGHTGIPNHICKICNKGYACAASLKIHNIKTHL 304
           H   HTG     C+ C++ ++ +  L +H +K H 
Sbjct: 56  HYRKHTGHRPFQCQKCDRAFSRSDHLALH-MKRHF 89

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 24/113 (21%), Positives = 31/113 (27%), Gaps = 27/113 (23%)

Query: 127 HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKR 186
            T         C K Y+    LK H   H  EK               C  D        
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH------------CDWDG------- 42

Query: 187 RVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
                  C   +     + +H  R HT  R + C +C +     D L  H K 
Sbjct: 43  -------CGWKFARSDELTRH-YRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTH 151
           + F C  C   F+ +  L  H  SHT  K Y C +C++A++ R  L  H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 36.3 bits (85), Expect = 9e-04
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 342 HLCKVCGAKI---KGSLKQHMITHTGERKYCCHICGK 375
            +C+VC  +    +  LK+H  +HT E+ Y C +C +
Sbjct: 3   FVCEVCT-RAFARQEHLKRHYRSHTNEKPYPCGLCNR 38

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 1/95 (1%)

Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLS 268
             + T   K+ C +C     +   L  H       +          +      P K +L 
Sbjct: 11  GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRD-DNHETDNNNPKRWSKPRKRSLL 69

Query: 269 DHISGHTGIPNHICKICNKGYACAASLKIHNIKTH 303
           +            C  C   +     L +H IKT 
Sbjct: 70  EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 4/111 (3%)

Query: 56  NMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFS 115
           + + +   +    S   C  C   +        HM       +    +    N       
Sbjct: 6   SGKLYGS-IFTGASKFRCKDCSAAYDTLVELTVHMNETG-HYRDDNHETDNNNPKRWSKP 63

Query: 116 NKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL--LHEQEKVIKSS 164
            K  L +        K  KC  C  ++   + L  H +   H Q+    SS
Sbjct: 64  RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 7/104 (6%)

Query: 229 SRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKG 288
           S  S   +  I   G        + C  C A Y     L+ H++  TG         +  
Sbjct: 3   SGSSGKLYGSI-FTGASK-----FRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNN 55

Query: 289 YACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKH 332
                S         ++      +  KC  C   F   + L+ H
Sbjct: 56  NPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 265 YTLSDHISGHTGIPNHICKICNKGYACAASLKIH-NIKTHLQFTGVPIEKFKCDLCDKEF 323
            +   + S  TG     CK C+  Y     L +H N   H +      E    +      
Sbjct: 5   SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDD--NHETDNNNPKRWSK 62

Query: 324 FEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHT 363
             K+ L + +      K   C  CG   +    L  HMI   
Sbjct: 63  PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 8/82 (9%)

Query: 72  TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTG 129
               C K F+     + H Q +H          +EC +  C  +FS  S L  H   H G
Sbjct: 5   HFENCGKAFKKHNQLKVH-QFSHTQQLP-----YECPHEGCDKRFSLPSRLKRHEKVHAG 58

Query: 130 LKNYKCHVCDKAYSCRKALKTH 151
               K   C            H
Sbjct: 59  YPCKKDDSCSFVGKTWTLYLKH 80

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 29/111 (26%)

Query: 133 YKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTV 190
           Y CH   C KA+     LK H   H Q+   +            C  +            
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE------------CPHEG----------- 38

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQH 241
              C++ +  P  +++H  +VH        D C  + K+      H    H
Sbjct: 39  ---CDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 98

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 178 DEWNDFIKRRVTV-CPKCNR-DYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNT 235
           ++W   I  R    CP CN    +    ++KH+           C  C K  KS+  LN 
Sbjct: 13  EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNY 72

Query: 236 HKKIQHEGKKV 246
           H   +H  K  
Sbjct: 73  HTMAEHSAKPS 83

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 98

 Score = 40.7 bits (94), Expect = 7e-05
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 31  DKW-RALIKNKTKTCPICNK-SYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQK 88
           ++W RA+ +     CP CN  +      ++KH+ +         C  C+K F++KA    
Sbjct: 13  EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNY 72

Query: 89  HMQRAHVGLKISVSK 103
           H    H         
Sbjct: 73  HTMAEHSAKPSDAEA 87

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS  G K +KC  CD  +S   +L+ H  +H  EK
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEK 39

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS  G+  YKC  C+K++S +  L  H  +H +EK
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREK 39

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 105 FECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
           + C  C  +    S+L  HI +HT ++ Y C  C+ ++  +  L  H       K
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 217 KYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTG 276
           KY C+ECG   K    L  H +  H   +      Y C YC   +  K  L+ H+     
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRT-HTDVR-----PYHCTYCNFSFKTKGNLTKHMKSKAH 54

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 103 KHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
           + + C    C  +FS    L+ HI  HTG K ++C +C + +S    L TH   H
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 355 LKQHMITHTGERKYCCHICGKKL--RGKLKEHM 385
           L +H+  HTG++ + C IC +       L  H+
Sbjct: 37  LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 11/37 (29%), Positives = 14/37 (37%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
              S  G K YKC  C   +     L+ H L+H    
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG 38

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
              SS TG K YKC  C K + CR+ L TH ++H  EK
Sbjct: 2   SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEK 39

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS +  K+++CH C + ++ +  L  H  +H  EK
Sbjct: 3   SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 43  TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVG 96
            CP+C   +  + ++++H+R       T  C +CKK F +  +   H+ + H  
Sbjct: 76  VCPLCLMPFSSSVSLKQHIRYTEH---TKVCPVCKKEFTSTDSALDHVCKKHNI 126

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 15/131 (11%)

Query: 117 KSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFI----IDT 172
            S    ++S+H G+     HV  +     +  + H L  EQ+++I++  K  I    +  
Sbjct: 7   DSGSKKYLSNHKGIF---IHVTLE-----ELKRYHQLTPEQKRLIRAIVKTLIHNPQLLD 58

Query: 173 GDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDS 232
               L            VCP C   + +  ++++H+R          C  C K   S DS
Sbjct: 59  ESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE---HTKVCPVCKKEFTSTDS 115

Query: 233 LNTHKKIQHEG 243
              H   +H  
Sbjct: 116 ALDHVCKKHNI 126

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
              S  G K Y C +C   +   + LK+H  +H    
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSG 38

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 358 HMITHTGERKYCCHICGKKLR--GKLKEHM 385
              +  GE+ Y C ICG + R    LK H+
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K ++C  C   +S   +L  H   HE+  
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTD 39

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G        +EC+ C   FS K  L  H  +H G K    
Sbjct: 4   GSSGTG-----ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 236 HKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHI-SGHTGI---PNHICKICNKGYAC 291
           H    H  +  KV+  YEC YC  + P+    + H+ S H  +    +++C  CN     
Sbjct: 3   HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62

Query: 292 AASLKIHNIKTH 303
             +L  HN+K H
Sbjct: 63  YDALSEHNLKYH 74

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 54  ARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAK 113
           A +   H +          C  C     +   F  H+   H  + ++ S  + C  C+  
Sbjct: 2   AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS--YVCVECNFL 59

Query: 114 FSNKSLLSDHIS-SHTGLKNYKCHV 137
                 LS+H    H G +N+K  +
Sbjct: 60  TKRYDALSEHNLKYHPGEENFKLTM 84

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 100 SVSKHFECNYCHAKFSNKSLLSDHISS-HTGLKNYKCHVCDKAYS 143
           SV K + C  C   FS    L+ HI   HT  + +KC V     S
Sbjct: 8   SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGK 225
           C  C + +  P ++  H+++VHTS R + C     
Sbjct: 15  CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCG 258
              +  + Y C  CGK     D LN H K  H  ++      ++C    
Sbjct: 5   SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSER-----PHKCQVWV 48

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K Y C+VC KA+     L  H  +H QE 
Sbjct: 3   SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS  G K Y+C  C K++S    L  H + H +EK
Sbjct: 3   SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREK 39

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS  G K YKC VC K +S    L+TH  +H  EK
Sbjct: 3   SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 18/38 (47%), Positives = 20/38 (52%)

Query: 122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
              SS TG K +KC  C K +S R AL  H  LH  EK
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEK 39

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS +G K Y+C  C K +     L  H  +H  E+
Sbjct: 3   SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGER 39

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG+K Y C+ C KA+S   +L TH ++H  EK
Sbjct: 3   SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G      KHFEC  C   F+ KS LS H   HTG K    
Sbjct: 4   GSSGTG-----GKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
              SS TG K Y+C  C KA++ R  L TH  +H  EK
Sbjct: 2   SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEK 39

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G      K + CN C   F +KS L  H  +HTG      
Sbjct: 4   GSSGTG-----MKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K + C  C KA+S    L  H  +H  EK
Sbjct: 3   SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G      K F+CN C   F+  S L+ H   HTG K    
Sbjct: 4   GSSGAG-----KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K YKC VC K++    +L  H  +H  EK
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K YKC VC KA+     L  H  +H  E+
Sbjct: 3   SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G      K ++C+ C   F+ KS L  H  SHTG ++   
Sbjct: 4   GSSGTG-----EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G      +H+EC+ C   F  KS LS H   H G K    
Sbjct: 4   GSSGTG-----ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G      +H+EC+ C   F+ KS L  H   HTG K    
Sbjct: 4   GSSGTG-----ERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 32/113 (28%)

Query: 129 GLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRV 188
             + Y+C +C+   S      +H  L                               R  
Sbjct: 13  NKEVYQCRLCNAKLSSLLEQGSHERLC------------------------------RNA 42

Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQH 241
            VCP C+  + +P   ++H        +K  C EC +  KS  S+  H+   H
Sbjct: 43  AVCPYCSLRFFSPELKQEH--ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K Y+C VC KA+S R++L  H  +H  +K
Sbjct: 3   SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 16/43 (37%), Positives = 19/43 (44%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSK 165
             SS +  K YKC  C K Y+ R  L  H  +H  EK    S 
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G      K +EC  C   F+ K+ L+ H  +HTG K    
Sbjct: 4   GSSGTG-----EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 17/37 (45%), Positives = 21/37 (56%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K Y+C VC KA+S   +L  H  +H  EK
Sbjct: 3   SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEK 39

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 17/37 (45%), Positives = 21/37 (56%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K YKC+ C KA+     L TH ++H  EK
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K YKC+ C K +     L  H  +H  EK
Sbjct: 3   SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEK 39

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
           S  +G K + C  C+KA+S +  L  H   H +EK
Sbjct: 3   SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 16/37 (43%), Positives = 18/37 (48%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K Y C  C K++S    L  H  LH  EK
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEK 39

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G      K + CN C   FS KS+LS H  +HTG K    
Sbjct: 4   GSSGSG-----EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K +KC +C K++  R  L  H+++H  EK
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEK 39

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K YKC  C KA+    +   H  LH  ++
Sbjct: 3   SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQR 39

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G      K +ECN C   F+ KS L  H  +HTG      
Sbjct: 4   GSSGTG-----EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G      K + C+ C   FS+KS L  H+ +H+G K    
Sbjct: 4   GSSGAG-----EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 16/38 (42%), Positives = 18/38 (47%)

Query: 122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
              SS +G K YKC  C K Y  R  L  H  +H  EK
Sbjct: 2   SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K Y C  C KA+     L+ H  +H  EK
Sbjct: 3   SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K YKC+ C KA+  R +L  H   H  EK
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEK 39

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG + Y C VC KA++ R  L  H  +H  EK
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEK 39

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS +G K Y C  C KA+     L  H  +H  EK
Sbjct: 3   SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEK 39

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 91  QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
             +  G      K FEC +C   F  K  L  H   HTG K+   
Sbjct: 4   GSSGTG-----QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 35.6 bits (83), Expect = 9e-04
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
              S  G K Y+C  C KA+S + +L  H  +H    
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
             SS TG K Y+C +C K+++ +  L  H  +H  EK
Sbjct: 3   SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEK 39

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	388
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.94
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.91
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.9
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.9
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.8
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.8
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.8
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.8
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.79
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.78
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.78
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.78
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.76
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.76
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.75
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.75
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.73
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.73
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.72
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.72
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.71
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.71
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.7
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.69
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.68
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.67
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.65
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.65
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.64
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.64
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.63
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.63
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.63
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.62
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.62
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.6
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.6
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.58
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.57
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.57
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.56
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.55
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.53
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.53
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.52
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.52
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.51
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.51
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.5
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.5
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.49
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.47
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.47
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.45
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.45
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.45
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.44
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.43
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.43
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.43
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.43
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.43
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.41
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.39
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.38
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.37
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.35
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.35
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.34
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.34
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.34
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.33
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.33
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.32
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.32
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.3
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.26
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.26
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.26
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.22
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.22
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.21
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.21
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.21
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.2
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.2
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.19
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.17
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.16
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.15
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.15
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.15
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.14
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.14
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.13
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.13
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.13
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.12
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.1
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.09
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.08
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.08
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.07
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.06
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.06
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.05
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.05
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.05
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.99
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.99
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.99
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.99
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.93
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.92
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.91
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.9
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.9
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.9
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.89
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.88
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.88
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.87
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.86
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.85
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.85
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.85
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.84
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.84
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.83
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.82
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.82
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.82
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.81
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.8
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.8
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.78
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.75
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.73
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.72
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.72
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.71
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.69
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.65
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.61
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.6
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.59
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.51
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.49
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.47
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.44
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.4
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.38
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.37
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.37
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.36
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.36
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.35
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.35
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.35
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.35
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.34
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.33
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.31
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.31
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.29
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.29
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.28
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.27
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.27
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.6
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.26
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.24
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.54
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.22
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.21
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.2
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.2
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.18
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.15
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.15
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.14
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.43
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.12
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.1
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.1
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.09
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.09
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.09
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.36
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.05
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.03
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.03
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.29
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.03
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.01
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.0
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.0
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.97
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.91
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.11
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.67
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.67
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.42
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.27
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.25
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.39
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.17
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.89
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.73
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.69
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.68
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.36
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.12
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	91.85
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	91.22
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	90.62
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.82
4rxn_A	54	Rubredoxin; electron transfer(iron-sulfur protein)	89.05
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.93
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	86.93
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	86.88
1e8j_A	52	Rubredoxin; iron-sulfur-protein, zinc-substitution	86.4
1yk4_A	52	Rubredoxin, RD; electron transport; 0.69A {Pyrococ	86.23
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	85.75
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	85.72
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	85.28
2kn9_A	81	Rubredoxin; metalloprotein, ssgcid, structural gen	84.62
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	84.2
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	83.72
2v3b_B	55	Rubredoxin 2, rubredoxin; alkane degradation, iron	83.05
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	82.46
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	81.74
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	80.81
1dx8_A	70	Rubredoxin; electron transport, zinc-substitution;	80.24

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2.1e-39  Score=270.12  Aligned_cols=143  Identities=31%  Similarity=0.632  Sum_probs=74.7

Q ss_pred             CCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCcccccccccccccc
Q psy4688         214 SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAA  293 (388)
Q Consensus       214 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~  293 (388)
                      ++++|.|++|++.|.+...|..|+++|++.+      +|.|++|++.|.+...|..|++.|.++++|.|++|++.|.+..
T Consensus        46 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  119 (190)
T 2i13_A           46 GEKPYKCPECGKSFSDKKDLTRHQRTHTGEK------PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLA  119 (190)
T ss_dssp             --CCEECTTTCCEESSHHHHHHHHHHHHCCC------CEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHH
T ss_pred             CCCCccCCCcCchhCCHHHHHHHHHhcCCCC------CccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHH
Confidence            3344444444444444444444444444322      3445555555555455555554444444555555555555555


Q ss_pred             ccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCc
Q psy4688         294 SLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKY  368 (388)
Q Consensus       294 ~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~  368 (388)
                      .|..|+. .|.     +.++|.|++|++.|.++..|..|+++|+++++|.|++|++.|  +..|..|+++|+|++||
T Consensus       120 ~l~~H~~-~h~-----~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          120 HLRAHQR-THT-----GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             HHHHHHH-HHH-----CCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC------
T ss_pred             HHHHHHH-HhC-----CCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            5544422 221     134566666777777777777777777777777777777776  45677777777777765

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=3.9e-39  Score=268.46  Aligned_cols=175  Identities=30%  Similarity=0.598  Sum_probs=137.7

Q ss_pred             chHHHHhHHhhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCc
Q psy4688         201 PRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNH  280 (388)
Q Consensus       201 ~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  280 (388)
                      ...|..|+ ..|.++++|.|++|++.|.+...|..|++.|++.+      +|.|++|++.|.+...|..|++.|.++++|
T Consensus         6 ~~~l~~h~-~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   78 (190)
T 2i13_A            6 SSSSVAQA-ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEK------PYKCPECGKSFSDKKDLTRHQRTHTGEKPY   78 (190)
T ss_dssp             --------------------------CCSSHHHHHGGGCC---C------CEECTTTCCEESSHHHHHHHHHHHHCCCCE
T ss_pred             hccchhhh-hhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCC------CccCCCcCchhCCHHHHHHHHHhcCCCCCc
Confidence            34677785 57889999999999999999999999999987654      799999999999999999999999999999


Q ss_pred             cccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHH
Q psy4688         281 ICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQH  358 (388)
Q Consensus       281 ~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H  358 (388)
                      .|++|++.|.+...|..|+.. |.     +.++|.|++|++.|.+...|..|+++|+++++|.|++||+.|  ++.|..|
T Consensus        79 ~C~~C~~~f~~~~~l~~H~~~-h~-----~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  152 (190)
T 2i13_A           79 KCPECGKSFSQRANLRAHQRT-HT-----GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH  152 (190)
T ss_dssp             ECTTTCCEESCHHHHHHHHHH-HH-----TCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH
T ss_pred             cCcccCCccCCHHHHHHHHHh-cC-----CCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHH
Confidence            999999999999999999554 42     247899999999999999999999999999999999999999  6789999


Q ss_pred             HHHhcCCCCccccccchhh--HhhhhhhhccC
Q psy4688         359 MITHTGERKYCCHICGKKL--RGKLKEHMLNT  388 (388)
Q Consensus       359 ~~~H~~~~~~~C~~C~k~f--~~~l~~H~~~~  388 (388)
                      +++|+|++||.|++||+.|  ...|+.||++|
T Consensus       153 ~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H  184 (190)
T 2i13_A          153 QRTHTGEKPYKCPECGKSFSRRDALNVHQRTH  184 (190)
T ss_dssp             HHHHHCCCCEECTTTCCEESSHHHHHHHHTTC
T ss_pred             HHhcCCCCCeECCCCCCccCCHHHHHHHHHhc
Confidence            9999999999999999999  56799999886

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=100.00  E-value=1.1e-33  Score=235.35  Aligned_cols=164  Identities=24%  Similarity=0.439  Sum_probs=135.6

Q ss_pred             hCCCCcccC--CCCcccCCChhHHHHHHHHhccCCcccccCcccc--cccCCcCCChhHHHHHHhhcCCCCCcccc--cc
Q psy4688         212 HTSVRKYGC--DECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC--DYCGAKYPNKYTLSDHISGHTGIPNHICK--IC  285 (388)
Q Consensus       212 h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~~~~~C~--~C  285 (388)
                      ..+.++|.|  +.|++.|.+...|..|+++|++.+      +|.|  ++|++.|.+...|..|+++|.++++|.|+  .|
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~------~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C   80 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEK------PFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGC   80 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCC------SSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSC
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCC------CccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCC
Confidence            345678888  689999988888999988887654      6888  78999999999999999888888889998  89


Q ss_pred             ccccccccccchhhccccccccCCCCCcccc--CCCcccccChhhHHhHHhhhcCCCcccCCc--chhhH--HhHHHHHH
Q psy4688         286 NKGYACAASLKIHNIKTHLQFTGVPIEKFKC--DLCDKEFFEKKKLNKHKNWAHGDKFHLCKV--CGAKI--KGSLKQHM  359 (388)
Q Consensus       286 ~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C--~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~--C~~~f--~~~L~~H~  359 (388)
                      ++.|.+...|..|+...|.    ....+|.|  ++|++.|.+...|..|+++|++++||.|++  |+++|  ++.|..|+
T Consensus        81 ~~~f~~~~~l~~H~~~~h~----~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~  156 (190)
T 1tf6_A           81 DLRFTTKANMKKHFNRFHN----IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE  156 (190)
T ss_dssp             CCEESCHHHHHHHHHTTSS----TTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHhcC----CCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHH
Confidence            9999998888888656652    22467899  889999999999999999999999999977  99988  56799999


Q ss_pred             HHhcCCCCccccc---cchhh--HhhhhhhhccC
Q psy4688         360 ITHTGERKYCCHI---CGKKL--RGKLKEHMLNT  388 (388)
Q Consensus       360 ~~H~~~~~~~C~~---C~k~f--~~~l~~H~~~~  388 (388)
                      ++|+|   |.|++   ||+.|  ...|+.||++|
T Consensus       157 ~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h  187 (190)
T 1tf6_A          157 KVHAG---YPCKKDDSCSFVGKTWTLYLKHVAEC  187 (190)
T ss_dssp             TSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTC
T ss_pred             HHhCC---CcCCCCCcCCCccccHHHHHHHHHhh
Confidence            99988   88888   99998  45689998775

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=1.7e-31  Score=222.16  Aligned_cols=168  Identities=28%  Similarity=0.530  Sum_probs=96.8

Q ss_pred             CCcccc--ccchhccCCchHHHHHHhhcCCCCCccC--CccccccCChHHHHHHHhhhcccccccccCceeeecCCCCCc
Q psy4688         102 SKHFEC--NYCHAKFSNKSLLSDHISSHTGLKNYKC--HVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTL  177 (388)
Q Consensus       102 ~~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~  177 (388)
                      .++|.|  +.|++.|.+...|..|++.|.++++|.|  +.|++.|.+...|..|+++|                      
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h----------------------   67 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH----------------------   67 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTT----------------------
T ss_pred             CcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHc----------------------
Confidence            355666  4566666666666666666666666666  55666666666665555444                      


Q ss_pred             cccchhhccCCCcccccccccCCchHHHHhHHhhhCCCCcccCC--CCcccCCChhHHHHHHHHhccCCcccccCcccc-
Q psy4688         178 DEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC-  254 (388)
Q Consensus       178 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C-  254 (388)
                                                         .++++|.|+  .|++.|.+...|..|++..|...    ..+|.| 
T Consensus        68 -----------------------------------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~----~~~~~C~  108 (190)
T 1tf6_A           68 -----------------------------------TGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK----ICVYVCH  108 (190)
T ss_dssp             -----------------------------------TTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTT----TSCCEEC
T ss_pred             -----------------------------------cCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCC----cceeeCC
Confidence                                               334445555  45555555555555553333110    114555 


Q ss_pred             -cccCCcCCChhHHHHHHhhcCCCCCccccc--cccccccccccchhhccccccccCCCCCccccCC---CcccccChhh
Q psy4688         255 -DYCGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDL---CDKEFFEKKK  328 (388)
Q Consensus       255 -~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~---C~k~F~~~~~  328 (388)
                       ++|++.|.+...|..|+++|++++||.|++  |++.|.+.+.|..|+ +.|.   +     |+|+.   |++.|.+...
T Consensus       109 ~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~-~~H~---~-----~~C~~~~~C~~~f~~~~~  179 (190)
T 1tf6_A          109 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHA---G-----YPCKKDDSCSFVGKTWTL  179 (190)
T ss_dssp             SSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHH-TSSC---S-----CCCCSTTTCCCCCSCHHH
T ss_pred             CCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHH-HHhC---C-----CcCCCCCcCCCccccHHH
Confidence             556666666666666666666666666655  666666666666663 2331   1     66666   7777777777


Q ss_pred             HHhHHhhhcCC
Q psy4688         329 LNKHKNWAHGD  339 (388)
Q Consensus       329 L~~H~~~hh~~  339 (388)
                      |..|+++|+|+
T Consensus       180 l~~H~~~h~~e  190 (190)
T 1tf6_A          180 YLKHVAECHQD  190 (190)
T ss_dssp             HHHHHTTCC--
T ss_pred             HHHHHHhhcCC
Confidence            77777777764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=1.3e-27  Score=191.87  Aligned_cols=140  Identities=23%  Similarity=0.494  Sum_probs=111.0

Q ss_pred             CCcccccccccCCchHHHHhHHh--hhCCCCcccCCCC-----cccCCChhHHHHHHHHhccCCcccccCcccccc--cC
Q psy4688         188 VTVCPKCNRDYRNPRNMRKHLRR--VHTSVRKYGCDEC-----GKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CG  258 (388)
Q Consensus       188 ~~~C~~C~~~f~~~~~l~~H~~~--~h~~~~~~~C~~C-----~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~--C~  258 (388)
                      ++.|+.|++.|.+...|..|++.  .|.++++|.|++|     ++.|.+...|..|+++|++.+      +|.|++  |+
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~------~~~C~~~~C~   76 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK------PHKCTFEGCR   76 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCC------CCCCCSTTCC
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCC------CccCCCCCCC
Confidence            46789999999999999999764  5778888887753     488888888888888887654      688875  88


Q ss_pred             CcCCChhHHHHHHhhcCCCCCccccc--cccccccccccchhhccccccccCCCCCccccCC--CcccccChhhHHhHHh
Q psy4688         259 AKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDL--CDKEFFEKKKLNKHKN  334 (388)
Q Consensus       259 ~~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~~  334 (388)
                      +.|.+...|..|+++|+++++|.|++  |++.|.+...|..|+...|.     ..++|.|++  |++.|.+++.|..|++
T Consensus        77 ~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-----~~~~~~C~~~~C~~~f~~~~~L~~H~~  151 (155)
T 2gli_A           77 KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS-----NEKPYVCKLPGCTKRYTDPSSLRKHVK  151 (155)
T ss_dssp             CCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTC-----SCCCEECCSTTTCCEESSHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcC-----CCCCeeCCCCCCccccCCHHHHHHHHH
Confidence            88888888888888888888888887  88888888888888545552     246788877  8888888888888888


Q ss_pred             hhcC
Q psy4688         335 WAHG  338 (388)
Q Consensus       335 ~hh~  338 (388)
                      +|||
T Consensus       152 ~hhg  155 (155)
T 2gli_A          152 TVHG  155 (155)
T ss_dssp             HSCC
T ss_pred             hhcC
Confidence            7775

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=2.9e-27  Score=189.89  Aligned_cols=107  Identities=34%  Similarity=0.593  Sum_probs=72.3

Q ss_pred             cccchhccCCchHHHHHHhhcCCCCCccCCc--cccccCChHHHHHHHhhhcccccccccCceeeecCCCCCccccchhh
Q psy4688         107 CNYCHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFI  184 (388)
Q Consensus       107 C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (388)
                      |..|++.|.+...|..|++.|.++++|.|++  |++.|.+...|..|+++|.++                          
T Consensus        42 C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--------------------------   95 (155)
T 2gli_A           42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE--------------------------   95 (155)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTC--------------------------
T ss_pred             ccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCC--------------------------
Confidence            3344577777777777777777777777764  777777777777777666543                          


Q ss_pred             ccCCCcccc--cccccCCchHHHHhHHhhhCCCCcccCCC--CcccCCChhHHHHHHHHhc
Q psy4688         185 KRRVTVCPK--CNRDYRNPRNMRKHLRRVHTSVRKYGCDE--CGKMLKSRDSLNTHKKIQH  241 (388)
Q Consensus       185 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~  241 (388)
                        ++|.|++  |++.|.+...|..|++..|.++++|.|++  |++.|.+...|..|+++||
T Consensus        96 --~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A           96 --KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             --CCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             --CCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence              2345665  66666666667777656667777777766  7777777777777776665

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=1.9e-25  Score=172.22  Aligned_cols=113  Identities=29%  Similarity=0.531  Sum_probs=77.3

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHH
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLN  330 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~  330 (388)
                      +|.|++|++.|.+...|..|+++|.++++|.|++|++.|.+...|..|....|.   ....++|.|++|++.|.+...|.
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~---~~~~~~~~C~~C~~~f~~~~~l~   83 (124)
T 2dlq_A            7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM---NRSEQVFTCSVCQETFRRRMELR   83 (124)
T ss_dssp             SCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCC---CSCCCCEECSSSCCEESSHHHHH
T ss_pred             CCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhc---CCCCCCeECCCCCCccCCHHHHH
Confidence            455666666666666666666666665666666666666666666666433221   12246788888888888888888


Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHH-HhcCCC
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMI-THTGER  366 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~-~H~~~~  366 (388)
                      .|+++|++++||.|++|++.|  +..|..|++ .|+|+.
T Consensus        84 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           84 LHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             HHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             HHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            888888888888888888888  567888887 576654

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.91  E-value=6.4e-26  Score=175.46  Aligned_cols=114  Identities=22%  Similarity=0.322  Sum_probs=89.6

Q ss_pred             HhHHhhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         206 KHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       206 ~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      .|.+.+|.|+++|.|++||+.|.+...|..|+++|.+++      +|.|++||+.|.+...|..|+++|+|++||.|++|
T Consensus        11 ~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k------~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   84 (133)
T 2lt7_A           11 DHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEK------KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC   84 (133)
T ss_dssp             SEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCS------CEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSS
T ss_pred             hhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCC------CeeCCccCeecccccchhhhccccCCCccccCCCC
Confidence            344667888899999999999999999999998887654      68999999999999999999999988888888888


Q ss_pred             ccccccccccchhhccccccccCCCCCccccCCCcccccC
Q psy4688         286 NKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFE  325 (388)
Q Consensus       286 ~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~  325 (388)
                      |+.|.+.+.|..|+...|........++|+|++|++.|..
T Consensus        85 ~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~  124 (133)
T 2lt7_A           85 GKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIR  124 (133)
T ss_dssp             CCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCC
T ss_pred             CCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhh
Confidence            8888888888888666664333233456777777777654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.90  E-value=8.4e-25  Score=175.44  Aligned_cols=128  Identities=30%  Similarity=0.494  Sum_probs=88.8

Q ss_pred             hCCCCcccCCCCcccCCChhHHHHHHHHhccCCccc---ccCcccccccCCcCCChhHHHHHHhhcCCCCCccccc--cc
Q psy4688         212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVK---VKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKI--CN  286 (388)
Q Consensus       212 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~---~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~  286 (388)
                      +.+..+|.|++|++.|.+...|..|++.+|.+....   ....|.|++|++.|.+...|..|+++|+++++|.|++  |+
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~   99 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCG   99 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTC
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCC
Confidence            456778999999999999999999999855443211   1123788888888888888888888888877777766  66


Q ss_pred             cccccccccchhhccccccccCCCCCccccCC--CcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         287 KGYACAASLKIHNIKTHLQFTGVPIEKFKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       287 k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      +.|.....|..|+. .|.     ..++|.|++  |++.|.+...|..|+++|+|++||.|+
T Consensus       100 ~~f~~~~~L~~H~~-~h~-----~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          100 KIFARSENLKIHKR-THT-----GEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CEESCHHHHHHHHT-TTC-----SSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CccCCHHHHHHHHH-hhC-----CCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            66666666666632 331     134566665  666666666666666666666666654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.90  E-value=1e-24  Score=166.78  Aligned_cols=77  Identities=34%  Similarity=0.673  Sum_probs=57.5

Q ss_pred             CccccC--CCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc--cccchhh--Hhhhhh
Q psy4688         312 EKFKCD--LCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC--HICGKKL--RGKLKE  383 (388)
Q Consensus       312 ~~~~C~--~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C--~~C~k~f--~~~l~~  383 (388)
                      ++|.|+  .|++.|.+...|..|+++|+++++|.|++|++.|  +..|..|+++|+|++||.|  ++||+.|  .+.|+.
T Consensus        35 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~  114 (119)
T 2jp9_A           35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR  114 (119)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHH
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHH
Confidence            356666  5777777777777777777777777888887777  5567788888888888888  6788887  455788


Q ss_pred             hhccC
Q psy4688         384 HMLNT  388 (388)
Q Consensus       384 H~~~~  388 (388)
                      ||++|
T Consensus       115 H~~~H  119 (119)
T 2jp9_A          115 HHNMH  119 (119)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            87766

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.90  E-value=1.4e-24  Score=167.23  Aligned_cols=111  Identities=27%  Similarity=0.587  Sum_probs=64.9

Q ss_pred             ccccc--ccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCC--CcccccCh
Q psy4688         251 EYECD--YCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDL--CDKEFFEK  326 (388)
Q Consensus       251 ~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F~~~  326 (388)
                      +|.|+  .|++.|.+...|..|+++| +.++|.|++|++.|.+...|..|+. .|.     ..++|.|++  |++.|.+.
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~-~h~-----~~~~~~C~~~~C~~~f~~~   77 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHT-----GEKPFQCTFEGCGKRFSLD   77 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGG-GTS-----CCCCEECCSTTCCCEESCH
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHH-HcC-----CCCCeeCCCCCCcCccCCH
Confidence            45555  4555555555555555555 4455555555555555555555532 221     134566764  77777777


Q ss_pred             hhHHhHHhhhcCCCcccCC--cchhhH--HhHHHHHHHHhcCCCCc
Q psy4688         327 KKLNKHKNWAHGDKFHLCK--VCGAKI--KGSLKQHMITHTGERKY  368 (388)
Q Consensus       327 ~~L~~H~~~hh~~~~~~C~--~C~~~f--~~~L~~H~~~H~~~~~~  368 (388)
                      ..|..|+++|+++++|.|+  .|++.|  ++.|..|+++|++++++
T Consensus        78 ~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           78 FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            7777777777777777774  477777  45677777777777765

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.90  E-value=3.4e-24  Score=171.84  Aligned_cols=115  Identities=24%  Similarity=0.418  Sum_probs=81.0

Q ss_pred             cccccccCCcCCChhHHHHHHhh-cCCCCC--------ccccccccccccccccchhhccccccccCCCCCccccCC--C
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISG-HTGIPN--------HICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDL--C  319 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~-H~~~~~--------~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C  319 (388)
                      +|.|++|++.|.+...|..|++. |.+..+        |.|++|++.|.+...|..|+. .|.     ..++|.|++  |
T Consensus        25 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~-----~~~~~~C~~~~C   98 (155)
T 2rpc_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHT-----GEKPFPCPFPGC   98 (155)
T ss_dssp             SSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTH-HHH-----CCCSEECSCTTT
T ss_pred             ccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHH-hcC-----CCCcccCCcCCC
Confidence            57777777777777777777776 555543        677777777777777777743 332     135677776  7


Q ss_pred             cccccChhhHHhHHhhhcCCCcccCCc--chhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         320 DKEFFEKKKLNKHKNWAHGDKFHLCKV--CGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       320 ~k~F~~~~~L~~H~~~hh~~~~~~C~~--C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      ++.|.+...|..|+++|+++++|.|++  |++.|  +..|..|+++|+|++||+|+
T Consensus        99 ~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           99 GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            777777777777777777777777776  77777  45677777777777777774

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=2.1e-23  Score=160.66  Aligned_cols=115  Identities=26%  Similarity=0.556  Sum_probs=104.2

Q ss_pred             hCCcCCCCCcCCcCCCcHHHHHHHHhhccCCCccccccchhcccChhhHHHHHHhhccCCCcCCCCccccccchhccCCc
Q psy4688          38 KNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNK  117 (388)
Q Consensus        38 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~C~~C~~~f~~~  117 (388)
                      +.++|.|++|++.|.+...|..|++. |.++.+|.|++|++.|.+...|..|++.++..   ...++|.|++|++.|.+.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~---~~~~~~~C~~C~~~f~~~   79 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMN---RSEQVFTCSVCQETFRRR   79 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHH-HSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCC---SCCCCEECSSSCCEESSH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHh-CCCCCCeECCCCCchhcCHHHHHHHHhhhhcC---CCCCCeECCCCCCccCCH
Confidence            45789999999999999999999986 67788999999999999999999999865432   235789999999999999


Q ss_pred             hHHHHHHhhcCCCCCccCCccccccCChHHHHHHHhhhc
Q psy4688         118 SLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHE  156 (388)
Q Consensus       118 ~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  156 (388)
                      ..|..|+++|++++||.|++|++.|.+...|..|++..+
T Consensus        80 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           80 MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             HHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             HHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            999999999999999999999999999999999998543

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=5.8e-24  Score=164.42  Aligned_cols=113  Identities=25%  Similarity=0.411  Sum_probs=79.5

Q ss_pred             HHhhcCCCCCccCCccccccCChHHHHHHHhhhcccccccccCceeeecCCCCCccccchhhccCCCcccccccccCCch
Q psy4688         123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPR  202 (388)
Q Consensus       123 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~  202 (388)
                      |..+|.|+++|.|++|+++|.+...|..|+++|.++                            ++|.|++|++.|.+..
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~----------------------------k~~~C~~C~k~F~~~~   64 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWE----------------------------KKYPCRYCEKVFPLAE   64 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCC----------------------------SCEECSSSSCEESSHH
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCC----------------------------CCeeCCccCeeccccc
Confidence            345566667777777777777777777776666543                            2345666666666677


Q ss_pred             HHHHhHHhhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCCh
Q psy4688         203 NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNK  264 (388)
Q Consensus       203 ~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~  264 (388)
                      .|..|+ .+|++++||.|++||+.|.+...|..|++++|+++......+|+|.+|++.|...
T Consensus        65 ~L~~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           65 YRTKHE-IHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHH-HHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             chhhhc-cccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            777774 4677788888888888888888888888888876654445567788888777644

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=1.3e-23  Score=161.81  Aligned_cols=117  Identities=23%  Similarity=0.429  Sum_probs=92.4

Q ss_pred             CCCcccCC--CCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCccccc--ccccc
Q psy4688         214 SVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGY  289 (388)
Q Consensus       214 ~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f  289 (388)
                      ++++|.|+  .|++.|.+...|..|+++| +.+      +|.|++|++.|.+...|..|+++|.++++|.|++  |++.|
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f   74 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPR------VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRF   74 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCC------CEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEE
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCC------CeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCcc
Confidence            35678898  8999999999999998877 322      6899999999999999999999999999999976  99999


Q ss_pred             ccccccchhhccccccccCCCCCccccC--CCcccccChhhHHhHHhhhcCCCccc
Q psy4688         290 ACAASLKIHNIKTHLQFTGVPIEKFKCD--LCDKEFFEKKKLNKHKNWAHGDKFHL  343 (388)
Q Consensus       290 ~~~~~L~~H~~~~H~~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~~~hh~~~~~~  343 (388)
                      .+...|..|+. .|.     +.++|.|+  .|++.|.+.+.|..|+++|+++++++
T Consensus        75 ~~~~~l~~H~~-~h~-----~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C           75 SLDFNLRTHVR-IHT-----GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             SCHHHHHHHHH-HHH-----CCCCCCCCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred             CCHHHHHHHHH-HhC-----CCCceECCCCCCCCccCCHHHHHHHHHHHcccccCC
Confidence            99999999954 442     24689996  59999999999999999999988763

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=1.3e-22  Score=155.04  Aligned_cols=111  Identities=29%  Similarity=0.622  Sum_probs=102.3

Q ss_pred             hCCcCCCCC--cCCcCCCcHHHHHHHHhhccCCCccccc--cchhcccChhhHHHHHHhhccCCCcCCCCccccccchhc
Q psy4688          38 KNKTKTCPI--CNKSYPGARNMRKHLRLVHDKNSTTTCT--MCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAK  113 (388)
Q Consensus        38 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~C~~C~~~  113 (388)
                      ++++|.|++  |++.|.+...|..|++. |.++.+|.|+  .|++.|.+...|..|++.++.      .++|.|++|++.
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~------~~~~~C~~C~~~   75 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG------VKPFQCKTCQRK   75 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHH-HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHC------CCCEECTTTCCE
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHh-hCCCCCccCCCCCCcCccCCHHHHHHHHHHcCC------CCCccCCccCch
Confidence            467899997  99999999999999986 7778899999  799999999999999986542      478999999999


Q ss_pred             cCCchHHHHHHhhcCCCCCccC--CccccccCChHHHHHHHhhh
Q psy4688         114 FSNKSLLSDHISSHTGLKNYKC--HVCDKAYSCRKALKTHTLLH  155 (388)
Q Consensus       114 f~~~~~L~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h  155 (388)
                      |.+...|..|+++|+++++|.|  +.|++.|.+...|..|+++|
T Consensus        76 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           76 FSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             hCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999999999999999999999  89999999999999999876

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.80  E-value=1.3e-20  Score=133.55  Aligned_cols=76  Identities=30%  Similarity=0.659  Sum_probs=55.9

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccccchhh--HhhhhhhhccC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL--RGKLKEHMLNT  388 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k~f--~~~l~~H~~~~  388 (388)
                      ||.|++|++.|.+...|..|++.|+++++|.|++|++.|  +..|..|+++|++++||.|++||+.|  .+.|+.||++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            467777777777777777777777777777777777777  45677777777777777777777777  45577777654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=8.6e-21  Score=141.78  Aligned_cols=93  Identities=17%  Similarity=0.229  Sum_probs=78.3

Q ss_pred             HHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchh
Q psy4688         270 HISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA  349 (388)
Q Consensus       270 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~  349 (388)
                      +++.|+++++|.|++|++.|.....|..|+. .|       .++|.|++|++.|.+...|..|++ |+++++|.|++|++
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~H-------~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~   77 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHER-LC-------RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMR   77 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHH-HH-------HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTE
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHH-HC-------CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccc
Confidence            4567788888888888888888888888843 34       147999999999999999999995 88999999999999


Q ss_pred             hH--HhHHHHHHH-HhcCCCCcccc
Q psy4688         350 KI--KGSLKQHMI-THTGERKYCCH  371 (388)
Q Consensus       350 ~f--~~~L~~H~~-~H~~~~~~~C~  371 (388)
                      .|  +..|..|++ +|++++||.|.
T Consensus        78 ~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           78 TFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             ECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             hhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            98  677999997 89999999875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=4.5e-20  Score=134.99  Aligned_cols=89  Identities=26%  Similarity=0.506  Sum_probs=69.5

Q ss_pred             cCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--
Q psy4688         274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--  351 (388)
Q Consensus       274 H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--  351 (388)
                      +.++++|.|++|++.|.+...|..|+. .|.     ..++|.|++|++.|.+...|..|+++|+++++|.|++|++.|  
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~-----~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   76 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMR-CHT-----GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN   76 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGG-GCC-----CCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHH-hcC-----CCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence            456778888888888888888888844 332     246788888888888888888888888888888888888887  


Q ss_pred             HhHHHHHHHHhcCCCCc
Q psy4688         352 KGSLKQHMITHTGERKY  368 (388)
Q Consensus       352 ~~~L~~H~~~H~~~~~~  368 (388)
                      +..|..|+++|+|+++.
T Consensus        77 ~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           77 SSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             HHHHHHHHTTCCSCCCC
T ss_pred             HHHHHHHHHHhcCCCCC
Confidence            56688888888887654

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=4.1e-21  Score=145.59  Aligned_cols=99  Identities=21%  Similarity=0.215  Sum_probs=44.2

Q ss_pred             HHHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCC-ccccCCCcccc--cChhhHHhHHhhhcCCCccc
Q psy4688         267 LSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIE-KFKCDLCDKEF--FEKKKLNKHKNWAHGDKFHL  343 (388)
Q Consensus       267 L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~-~~~C~~C~k~F--~~~~~L~~H~~~hh~~~~~~  343 (388)
                      |..|+++|+++++|.|++|++.|.+...|..|+.. +..   ...+ .+.|++|++.|  .+...|..|+++|++++||.
T Consensus         7 l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-~~h---~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~   82 (115)
T 2dmi_A            7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE-TGH---YRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLK   82 (115)
T ss_dssp             CCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHH-TCC---CBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCB
T ss_pred             hhhheeeeCCCCCEECCccCchhcCHHHHHHHHHH-hCc---cccCCCccCCCCCcccccccHHHHHHHhhccCCCcceE
Confidence            44444444444444444444444444444444321 100   0011 22355555544  44555555555555555555


Q ss_pred             CCcchhhH--HhHHHHHHHHhcCCCCcc
Q psy4688         344 CKVCGAKI--KGSLKQHMITHTGERKYC  369 (388)
Q Consensus       344 C~~C~~~f--~~~L~~H~~~H~~~~~~~  369 (388)
                      |++|++.|  ++.|..|+++|.......
T Consensus        83 C~~C~k~f~~~~~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           83 CMYCGHSFESLQDLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHTTTTTCSC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCcccCC
Confidence            55555554  334555555544444333

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.79  E-value=6.1e-20  Score=132.53  Aligned_cols=84  Identities=25%  Similarity=0.520  Sum_probs=44.2

Q ss_pred             CCCcccc--ccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--H
Q psy4688         277 IPNHICK--ICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--K  352 (388)
Q Consensus       277 ~~~~~C~--~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~  352 (388)
                      +++|.|+  .|++.|.....|..|+. .|.     ..++|.|++|++.|.+...|..|+++|+++++|.|++|++.|  +
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~-~h~-----~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   75 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIR-IHT-----GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS   75 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHH-HHH-----CCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHH-HhC-----CCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCH
Confidence            4455555  35555555555555532 221     124455555555555555555555555555555555555555  3


Q ss_pred             hHHHHHHHHhcCCC
Q psy4688         353 GSLKQHMITHTGER  366 (388)
Q Consensus       353 ~~L~~H~~~H~~~~  366 (388)
                      +.|..|+++|+|++
T Consensus        76 ~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           76 DERKRHTKIHLRQK   89 (90)
T ss_dssp             HHHHHHHGGGGC--
T ss_pred             HHHHHHHHHhcccC
Confidence            44555555555554

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.78  E-value=4.8e-19  Score=132.02  Aligned_cols=88  Identities=28%  Similarity=0.546  Sum_probs=49.4

Q ss_pred             CcccccccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhH
Q psy4688         250 YEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKL  329 (388)
Q Consensus       250 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L  329 (388)
                      .+|.|++|++.|.+...|..|++.|.++++|.|++|++.|.....|..|+ ..|.     ..++|.|++|++.|.+...|
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~-----~~~~~~C~~C~~~f~~~~~L   89 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR-YIHS-----KEKPFKCQECGKGFCQSRTL   89 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHG-GGSC-----CCCTTSCSSSCCCCSSHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHH-HHhC-----CCCCeECCCcCCcccCHHHH
Confidence            35677777777777777777776666655555555555555444444442 2221     12345555555555555555


Q ss_pred             HhHHhhhcCCCccc
Q psy4688         330 NKHKNWAHGDKFHL  343 (388)
Q Consensus       330 ~~H~~~hh~~~~~~  343 (388)
                      ..|+++|+++++|.
T Consensus        90 ~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           90 AVHKTLHMQTSSPT  103 (106)
T ss_dssp             HHHHHHTTSCCCCC
T ss_pred             HHHHHHhCCCCCCc
Confidence            55555555555554

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.78  E-value=2.1e-19  Score=131.14  Aligned_cols=74  Identities=34%  Similarity=0.725  Sum_probs=38.4

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCC--CCccccccchhh--Hhhhhhhh
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGE--RKYCCHICGKKL--RGKLKEHM  385 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~--~~~~C~~C~k~f--~~~l~~H~  385 (388)
                      ++|.|++|++.|.+...|..|+++|+++++|.|++|++.|  +..|..|+++|+++  +||.|++|++.|  ...|+.||
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~   85 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI   85 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHH
T ss_pred             CCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHH
Confidence            4455555555555555555555555555555555555554  33455555555554  455555555555  23355554

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.78  E-value=1.8e-19  Score=131.78  Aligned_cols=88  Identities=28%  Similarity=0.458  Sum_probs=75.3

Q ss_pred             cCcccccccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhh
Q psy4688         249 KYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKK  328 (388)
Q Consensus       249 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~  328 (388)
                      ..+|.|++|++.|.+...|..|++.|.++++|.|++|++.|.....|..|+. .|.     ..++|.|++|++.|.+...
T Consensus         6 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~-----~~~~~~C~~C~~~f~~~~~   79 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHS-----DERPFKCQICPYASRNSSQ   79 (96)
T ss_dssp             CCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHH-HSC-----CCCCEECSSSSCEESSHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHH-HhC-----CCCCccCCCCCCccCCHHH
Confidence            3479999999999999999999999999999999999999999999999954 342     2468999999999999999


Q ss_pred             HHhHHhhhcCCCcc
Q psy4688         329 LNKHKNWAHGDKFH  342 (388)
Q Consensus       329 L~~H~~~hh~~~~~  342 (388)
                      |..|+++|+++++.
T Consensus        80 l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           80 LTVHLRSHTGDSGP   93 (96)
T ss_dssp             HHHHHTTCCSCCCC
T ss_pred             HHHHHHHhcCCCCC
Confidence            99999999988754

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.76  E-value=1.8e-19  Score=117.56  Aligned_cols=56  Identities=21%  Similarity=0.539  Sum_probs=52.0

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGER  366 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~  366 (388)
                      ++||+|++||+.|.+.+.|..|+++|.|++||.|++||+.|  +++|..||++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            58999999999999999999999999999999999999999  678999999999985

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.3e-19  Score=137.33  Aligned_cols=89  Identities=20%  Similarity=0.235  Sum_probs=55.5

Q ss_pred             cccccccCCcCCChhHHHHHHhh--cCCCCCc-ccccccccc--ccccccchhhccccccccCCCCCccccCCCcccccC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISG--HTGIPNH-ICKICNKGY--ACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFE  325 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~--H~~~~~~-~C~~C~k~f--~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~  325 (388)
                      +|.|++|++.|.+...|..|++.  |.+.+++ .|++|++.|  .....|..|+ ..|.     .+++|.|++|++.|.+
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~-~~H~-----~~~~~~C~~C~k~f~~   92 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME-GKED-----AQKVLKCMYCGHSFES   92 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCC-CSCC-----CCSSCBCSSSCCBCSS
T ss_pred             CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHh-hccC-----CCcceECCCCCCccCC
Confidence            45555555555555555555554  4444443 367777666  6666777663 3331     2467888888888888


Q ss_pred             hhhHHhHHhhhcCCCcccCC
Q psy4688         326 KKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       326 ~~~L~~H~~~hh~~~~~~C~  345 (388)
                      ...|..|+++||.......+
T Consensus        93 ~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           93 LQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             HHHHHHHHHHTTTTTCSCCC
T ss_pred             HHHHHHHHHHhCCcccCCCC
Confidence            88888888887776655544

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.75  E-value=3.6e-18  Score=127.20  Aligned_cols=90  Identities=29%  Similarity=0.594  Sum_probs=72.5

Q ss_pred             cCCCcccccccccCCchHHHHhHHhhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChh
Q psy4688         186 RRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKY  265 (388)
Q Consensus       186 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~  265 (388)
                      .++|.|++|++.|.+...|..|+ ..|.++++|.|++|++.|.+...|..|+++|++.+      +|.|++|++.|.+..
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~------~~~C~~C~~~f~~~~   87 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHE-RTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK------PFKCQECGKGFCQSR   87 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHH-HHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCC------TTSCSSSCCCCSSHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHH-HHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCC------CeECCCcCCcccCHH
Confidence            45678888888888888888886 46777888888888888888888888888877544      688888888888888


Q ss_pred             HHHHHHhhcCCCCCccc
Q psy4688         266 TLSDHISGHTGIPNHIC  282 (388)
Q Consensus       266 ~L~~H~~~H~~~~~~~C  282 (388)
                      .|..|+++|.++++|.+
T Consensus        88 ~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           88 TLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHhCCCCCCcC
Confidence            88888888888877653

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.75  E-value=5.8e-19  Score=127.04  Aligned_cols=77  Identities=30%  Similarity=0.605  Sum_probs=69.3

Q ss_pred             CccccCC--CcccccChhhHHhHHhhhcCCCcccCC--cchhhH--HhHHHHHHHHhcCCCCccccccchhh--Hhhhhh
Q psy4688         312 EKFKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCK--VCGAKI--KGSLKQHMITHTGERKYCCHICGKKL--RGKLKE  383 (388)
Q Consensus       312 ~~~~C~~--C~k~F~~~~~L~~H~~~hh~~~~~~C~--~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k~f--~~~l~~  383 (388)
                      .+|.|++  |++.|.+...|..|++.|+++++|.|+  .|++.|  ...|..|+++|+|++||.|++||+.|  .+.|..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL   83 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHH
Confidence            5789999  999999999999999999999999997  599998  56799999999999999999999999  567999


Q ss_pred             hhccC
Q psy4688         384 HMLNT  388 (388)
Q Consensus       384 H~~~~  388 (388)
                      ||++|
T Consensus        84 H~~~H   88 (89)
T 2wbs_A           84 HMKRH   88 (89)
T ss_dssp             HGGGG
T ss_pred             HHHhh
Confidence            99876

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.73  E-value=1.9e-18  Score=127.29  Aligned_cols=78  Identities=26%  Similarity=0.534  Sum_probs=67.2

Q ss_pred             CCccccCC--CcccccChhhHHhHHhhhcCCCcccCC--cchhhH--HhHHHHHHHHhcCCCCccccccchhh--Hhhhh
Q psy4688         311 IEKFKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCK--VCGAKI--KGSLKQHMITHTGERKYCCHICGKKL--RGKLK  382 (388)
Q Consensus       311 ~~~~~C~~--C~k~F~~~~~L~~H~~~hh~~~~~~C~--~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k~f--~~~l~  382 (388)
                      .++|.|++  |++.|.+...|..|++.|+++++|.|+  .|++.|  ...|..|+++|++++||.|++||+.|  ...|+
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   92 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA   92 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHH
Confidence            46788987  999999999999999999999999996  599888  56799999999999999999999999  46699


Q ss_pred             hhhccC
Q psy4688         383 EHMLNT  388 (388)
Q Consensus       383 ~H~~~~  388 (388)
                      .||++|
T Consensus        93 ~H~~~H   98 (100)
T 2ebt_A           93 LHMKRH   98 (100)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.73  E-value=3.2e-18  Score=121.06  Aligned_cols=81  Identities=35%  Similarity=0.694  Sum_probs=57.2

Q ss_pred             ccccccchhcccChhhHHHHHHhhccCCCcCCCCccccccchhccCCchHHHHHHhhcCCCCCccCCccccccCChHHHH
Q psy4688          70 TTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALK  149 (388)
Q Consensus        70 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  149 (388)
                      ||.|++|++.|.+...|..|++.++ +     .++|.|+.|++.|.+...|..|++.|+++++|.|++|++.|.+...|.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~-~-----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   74 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS-D-----TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLI   74 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH-T-----CCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcC-C-----CCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHH
Confidence            4667777777777777777765433 2     256777777777777777777777777777777777777777777777


Q ss_pred             HHHhhhc
Q psy4688         150 THTLLHE  156 (388)
Q Consensus       150 ~H~~~h~  156 (388)
                      .|+++|+
T Consensus        75 ~H~~~H~   81 (82)
T 2kmk_A           75 THSRKHT   81 (82)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhhC
Confidence            7777664

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=2.9e-18  Score=124.96  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=12.0

Q ss_pred             CccccCCCcccccChhhHHhHHh
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKN  334 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~  334 (388)
                      ++|.|++|++.|.+...|..|++
T Consensus        64 ~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           64 KPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CceECCCccchhCCHHHHHHHHH
Confidence            34555555555555555555554

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.72  E-value=5e-18  Score=122.37  Aligned_cols=85  Identities=27%  Similarity=0.659  Sum_probs=60.2

Q ss_pred             CCccccc--cchhcccChhhHHHHHHhhccCCCcCCCCccccccchhccCCchHHHHHHhhcCCCCCccCCccccccCCh
Q psy4688          68 NSTTTCT--MCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCR  145 (388)
Q Consensus        68 ~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~  145 (388)
                      +++|.|+  .|++.|.+...|..|++.++.      .++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+.
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   75 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTG------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS   75 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHC------CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCC------CCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCH
Confidence            3467776  477777777777777664432      35677777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhhhccc
Q psy4688         146 KALKTHTLLHEQE  158 (388)
Q Consensus       146 ~~l~~H~~~h~~~  158 (388)
                      ..|..|+++|.++
T Consensus        76 ~~l~~H~~~H~~~   88 (90)
T 1a1h_A           76 DERKRHTKIHLRQ   88 (90)
T ss_dssp             HHHHHHHGGGGC-
T ss_pred             HHHHHHHHHhccc
Confidence            7777777777654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=4.4e-18  Score=119.43  Aligned_cols=68  Identities=32%  Similarity=0.621  Sum_probs=62.5

Q ss_pred             CCccccCC--CcccccChhhHHhHHh-hhcCCCcccCCc--chhhH--HhHHHHHHHHhcCCCCccccccchhhH
Q psy4688         311 IEKFKCDL--CDKEFFEKKKLNKHKN-WAHGDKFHLCKV--CGAKI--KGSLKQHMITHTGERKYCCHICGKKLR  378 (388)
Q Consensus       311 ~~~~~C~~--C~k~F~~~~~L~~H~~-~hh~~~~~~C~~--C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k~f~  378 (388)
                      .++|.|+.  |++.|.+...|..|++ .|.++++|.|++  |++.|  +..|..||++|++++||.|++||++|.
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            56788887  9999999999999999 688999999999  99999  678999999999999999999999983

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.71  E-value=1.2e-18  Score=124.98  Aligned_cols=74  Identities=22%  Similarity=0.382  Sum_probs=46.4

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccccchhhH--hhhhhhhc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKLR--GKLKEHML  386 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k~f~--~~l~~H~~  386 (388)
                      +||.|++|++.|.+...|..|+++|++++||.|++|++.|  ++.|..|+++|++ .+|.|+.|++.|.  ..|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            4566666666666666666666666666666666666666  4556666666654 5666666666663  33666654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=5.5e-18  Score=127.13  Aligned_cols=81  Identities=30%  Similarity=0.601  Sum_probs=50.0

Q ss_pred             hhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCccccccccccc
Q psy4688         211 VHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYA  290 (388)
Q Consensus       211 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~  290 (388)
                      .|+++++|.| +|++.|.+...|..|++.|++.+      +|.|++|++.|.+...|..|+++|.++++|.|++|++.|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   76 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLR------PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM   76 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCC------SEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEES
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCc------CccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhc
Confidence            3556666777 67777777777777776665433      4666666666666666666666666655555555555554


Q ss_pred             cccccchh
Q psy4688         291 CAASLKIH  298 (388)
Q Consensus       291 ~~~~L~~H  298 (388)
                      ....|..|
T Consensus        77 ~~~~l~~H   84 (110)
T 2csh_A           77 WRDSFHRH   84 (110)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            44444444

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=3e-17  Score=122.34  Aligned_cols=83  Identities=19%  Similarity=0.389  Sum_probs=42.1

Q ss_pred             hCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCcccccccccccc
Q psy4688         212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYAC  291 (388)
Q Consensus       212 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~  291 (388)
                      |.++++|.|++|++.|.+...|..|+++|.        .+|.|++|++.|.+...|..|++ |+++++|.|++|++.|..
T Consensus        11 h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--------~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~   81 (107)
T 1wjp_A           11 VENKEVYQCRLCNAKLSSLLEQGSHERLCR--------NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKS   81 (107)
T ss_dssp             CCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--------HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSS
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHCC--------CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCC
Confidence            444455555555555555555555555542        13555555555555555555553 555555555555555555


Q ss_pred             ccccchhhcccc
Q psy4688         292 AASLKIHNIKTH  303 (388)
Q Consensus       292 ~~~L~~H~~~~H  303 (388)
                      ...|..|+...|
T Consensus        82 ~~~L~~H~~~~H   93 (107)
T 1wjp_A           82 SFSIWRHQVEVH   93 (107)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHc
Confidence            555555533333

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.3e-17  Score=123.74  Aligned_cols=88  Identities=27%  Similarity=0.583  Sum_probs=79.1

Q ss_pred             ccCCCccccccchhcccChhhHHHHHHhhccCCCcCCCCccccccchhccCCchHHHHHHhhcCCCCCccCCccccccCC
Q psy4688          65 HDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSC  144 (388)
Q Consensus        65 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~  144 (388)
                      |.++++|.| .|++.|.+...|..|++.++.      .++|.|++|++.|.+...|..|++.|.++++|.|++|++.|.+
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   77 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLG------LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW   77 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSC------CCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCC------CcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence            677889999 899999999999999875542      3689999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhcccc
Q psy4688         145 RKALKTHTLLHEQEK  159 (388)
Q Consensus       145 ~~~l~~H~~~h~~~~  159 (388)
                      ...|..|++.|+...
T Consensus        78 ~~~l~~H~~~~~~~~   92 (110)
T 2csh_A           78 RDSFHRHVTSCTKSY   92 (110)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccc
Confidence            999999999987643

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.69  E-value=2e-17  Score=107.89  Aligned_cols=59  Identities=24%  Similarity=0.551  Sum_probs=46.9

Q ss_pred             CCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCC
Q psy4688         214 SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIP  278 (388)
Q Consensus       214 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~  278 (388)
                      +++||.|++||+.|...+.|..|+++|.+++      +|.|++||+.|...+.|..|+++|+|++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ek------p~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYR------PRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCC------CEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCc------CeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            3678888888888888888888888887655      6888888888888888888888888764

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.68  E-value=2.1e-17  Score=117.68  Aligned_cols=73  Identities=23%  Similarity=0.427  Sum_probs=64.6

Q ss_pred             cccc--CCCcccccChhhHHhHHhhhcCCCcccCCc--chhhH--HhHHHHHHHHhcCCCCccccc---cchhh--Hhhh
Q psy4688         313 KFKC--DLCDKEFFEKKKLNKHKNWAHGDKFHLCKV--CGAKI--KGSLKQHMITHTGERKYCCHI---CGKKL--RGKL  381 (388)
Q Consensus       313 ~~~C--~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~--C~~~f--~~~L~~H~~~H~~~~~~~C~~---C~k~f--~~~l  381 (388)
                      ||.|  +.|++.|.+...|..|+++|+++++|.|++  |++.|  +..|..|+++|+|   |.|++   ||+.|  .+.|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            5889  889999999999999999999999999988  99988  5679999999998   99999   99999  4669


Q ss_pred             hhhhccC
Q psy4688         382 KEHMLNT  388 (388)
Q Consensus       382 ~~H~~~~  388 (388)
                      +.||++|
T Consensus        78 ~~H~~~h   84 (85)
T 2j7j_A           78 LKHVAEC   84 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9998765

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.67  E-value=1.6e-18  Score=124.41  Aligned_cols=80  Identities=23%  Similarity=0.395  Sum_probs=38.9

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHH
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLN  330 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~  330 (388)
                      +|.|++|++.|.+...|..|+++|+++++|.|++|++.|.....|..|+...|       ..+|.|+.|++.|.+...|.
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~-------~~~~~c~~C~~~f~~~~~L~   75 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-------ILPILEDKVEELLSKNYHLE   75 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC-------CCcchHHHHHHHHHHHhhhH
Confidence            45555555555555555555555555544444444444444444444432222       12344444444444444444


Q ss_pred             hHHhhhc
Q psy4688         331 KHKNWAH  337 (388)
Q Consensus       331 ~H~~~hh  337 (388)
                      .|++.+|
T Consensus        76 ~H~~~~h   82 (88)
T 1llm_C           76 NEVARLK   82 (88)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=3.4e-17  Score=119.29  Aligned_cols=73  Identities=16%  Similarity=0.264  Sum_probs=61.7

Q ss_pred             cccccCCCCCccccCCCcccccChhhHHhHHhh-h---cCCCcccCCcchhhH--HhHHHHH-HHHhcCCCCccccccch
Q psy4688         303 HLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNW-A---HGDKFHLCKVCGAKI--KGSLKQH-MITHTGERKYCCHICGK  375 (388)
Q Consensus       303 H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~-h---h~~~~~~C~~C~~~f--~~~L~~H-~~~H~~~~~~~C~~C~k  375 (388)
                      |.+....+++||.|++||+.|.+++.|..|++. |   .+++||.|++||+.|  ++.|..| +++|+|++||.|+++.+
T Consensus         8 ~~~~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A            8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             TTTTCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             cccccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            334445567899999999999999999999985 6   468999999999999  5779999 79999999999998654

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=6.9e-17  Score=112.57  Aligned_cols=61  Identities=31%  Similarity=0.566  Sum_probs=56.6

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      ..++|.|++|++.|.+...|..|+++|+++++|.|++|++.|  +..|..|+++|+|++||.|
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            357899999999999999999999999999999999999999  6779999999999999988

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.64  E-value=1e-16  Score=115.19  Aligned_cols=80  Identities=30%  Similarity=0.596  Sum_probs=39.6

Q ss_pred             cccccc--cCCcCCChhHHHHHHhhcCCCCCcccc--ccccccccccccchhhccccccccCCCCCccccCCCcccccCh
Q psy4688         251 EYECDY--CGAKYPNKYTLSDHISGHTGIPNHICK--ICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEK  326 (388)
Q Consensus       251 ~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~  326 (388)
                      +|.|++  |++.|.+...|..|++.|.++++|.|+  .|++.|.+...|..|. ..|.     ..++|.|++|++.|.+.
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~-----~~~~~~C~~C~~~f~~~   78 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHT-----GHRPFQCQKCDRAFSRS   78 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHH-HHHH-----CCCCEECSSSSCEESSH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHH-HHcC-----CCCCccCCCCCcccCCH
Confidence            344554  555555555555555555555555554  3555555555555552 2221     12345555555555555


Q ss_pred             hhHHhHHhhh
Q psy4688         327 KKLNKHKNWA  336 (388)
Q Consensus       327 ~~L~~H~~~h  336 (388)
                      +.|..|+++|
T Consensus        79 ~~l~~H~~~H   88 (89)
T 2wbs_A           79 DHLALHMKRH   88 (89)
T ss_dssp             HHHHHHGGGG
T ss_pred             HHHHHHHHhh
Confidence            5555555544

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.5e-16  Score=113.47  Aligned_cols=66  Identities=23%  Similarity=0.458  Sum_probs=39.3

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCC----CcccCCcchhhH--HhHHHHHHHHhcCCCCccccccchhh
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGD----KFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL  377 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~----~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k~f  377 (388)
                      ++|.|++|++.|.+...|..|++.++++    ++|.|++|++.|  +..|..|+++|+++++|.|+.||.+|
T Consensus        14 k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            4556666666666666666666555544    456666666665  44566666666666666666666543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=4.3e-17  Score=116.31  Aligned_cols=84  Identities=20%  Similarity=0.303  Sum_probs=70.9

Q ss_pred             HHHHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         266 TLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       266 ~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      +|..|+++|+++++|.|++|++.|.....|..|+...|...  ...++|.|++|++.|.+...|..|+++|++++++.|+
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~--~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~   79 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN--FVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGE   79 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS--CCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc--CCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccC
Confidence            35678899999999999999999999999999965555321  1136899999999999999999999999999999999


Q ss_pred             cchhhH
Q psy4688         346 VCGAKI  351 (388)
Q Consensus       346 ~C~~~f  351 (388)
                      .|+..|
T Consensus        80 ~~~~~~   85 (86)
T 1x6h_A           80 NSGPSS   85 (86)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            998753

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.63  E-value=2.9e-16  Score=108.48  Aligned_cols=59  Identities=37%  Similarity=0.713  Sum_probs=55.3

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKY  368 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~  368 (388)
                      ..++|+|++|++.|.+...|..|+++|+++++|.|++|++.|  +..|..|+++|+|++||
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            457899999999999999999999999999999999999999  67899999999999987

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.63  E-value=8.4e-16  Score=112.93  Aligned_cols=85  Identities=27%  Similarity=0.636  Sum_probs=67.4

Q ss_pred             ccCCCcccc--cccccCCchHHHHhHHhhhCCCCcccCC--CCcccCCChhHHHHHHHHhccCCcccccCcccccccCCc
Q psy4688         185 KRRVTVCPK--CNRDYRNPRNMRKHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAK  260 (388)
Q Consensus       185 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~  260 (388)
                      ..+++.|+.  |++.|.+...|..|+ ..|.++++|.|+  .|++.|.+...|..|+++|++.+      +|.|++|++.
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~------~~~C~~C~~~   84 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK------PFQCGVCNRS   84 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHH-HHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCC------SCBCSSSCCB
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHH-HHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCC------CeECCCCcCc
Confidence            345677886  888888888888886 467788888885  58888888888888888877654      6888888888


Q ss_pred             CCChhHHHHHHhhcCC
Q psy4688         261 YPNKYTLSDHISGHTG  276 (388)
Q Consensus       261 f~~~~~L~~H~~~H~~  276 (388)
                      |.+...|..|+++|++
T Consensus        85 f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           85 FSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CSSHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHhCC
Confidence            8888888888888764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=3.7e-16  Score=109.44  Aligned_cols=72  Identities=28%  Similarity=0.587  Sum_probs=56.0

Q ss_pred             CCCCcccCCC--CcccCCChhHHHHHHH-HhccCCcccccCcccccc--cCCcCCChhHHHHHHhhcCCCCCcccccccc
Q psy4688         213 TSVRKYGCDE--CGKMLKSRDSLNTHKK-IQHEGKKVKVKYEYECDY--CGAKYPNKYTLSDHISGHTGIPNHICKICNK  287 (388)
Q Consensus       213 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k  287 (388)
                      +++++|.|+.  |++.|.+...|..|++ .|.+.+      +|.|++  |++.|.+...|..|+++|+++++|.|++|++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~------~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k   76 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK------SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP   76 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCC------CEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCC------CeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCC
Confidence            4567788876  8888888888888887 455433      688887  8888888888888888888888888888888


Q ss_pred             ccc
Q psy4688         288 GYA  290 (388)
Q Consensus       288 ~f~  290 (388)
                      .|.
T Consensus        77 ~F~   79 (79)
T 2dlk_A           77 SSG   79 (79)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            773

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.62  E-value=3e-16  Score=110.14  Aligned_cols=58  Identities=26%  Similarity=0.507  Sum_probs=52.7

Q ss_pred             CCCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHH-HHhcCCC
Q psy4688         309 VPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHM-ITHTGER  366 (388)
Q Consensus       309 ~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~-~~H~~~~  366 (388)
                      .+.++|.|++||+.|.++..|.+|+++|++++||.|++|+++|  +..|.+|+ ++|++|.
T Consensus        24 ~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           24 ASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            3467899999999999999999999999999999999999999  67899997 5798875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.60  E-value=2.6e-16  Score=111.96  Aligned_cols=78  Identities=28%  Similarity=0.468  Sum_probs=49.2

Q ss_pred             cccc--cccCCcCCChhHHHHHHhhcCCCCCccccc--cccccccccccchhhccccccccCCCCCccccCC---Ccccc
Q psy4688         251 EYEC--DYCGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDL---CDKEF  323 (388)
Q Consensus       251 ~~~C--~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~---C~k~F  323 (388)
                      ||.|  +.||+.|.+...|..|+++|.++++|.|++  |++.|.+...|..|+ ..|.   +     |.|+.   |++.|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~---~-----~~C~~~~~C~~~f   71 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHA---G-----YPCKKDDSCSFVG   71 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHH-HHHH---S-----EECCSCSSCCCEE
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHH-HHhC---C-----CCCCCCCCCCCcc
Confidence            3566  666666666666666666666666666655  666666666666663 2331   1     66666   77777


Q ss_pred             cChhhHHhHHhhhc
Q psy4688         324 FEKKKLNKHKNWAH  337 (388)
Q Consensus       324 ~~~~~L~~H~~~hh  337 (388)
                      .+.+.|..|+++||
T Consensus        72 ~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           72 KTWTLYLKHVAECH   85 (85)
T ss_dssp             SSHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHhcC
Confidence            77777777776654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.60  E-value=5e-17  Score=125.56  Aligned_cols=59  Identities=22%  Similarity=0.366  Sum_probs=28.1

Q ss_pred             hhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccccchhh--Hhhhhhhhcc
Q psy4688         326 KKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL--RGKLKEHMLN  387 (388)
Q Consensus       326 ~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k~f--~~~l~~H~~~  387 (388)
                      ...|..|+ .|++++||.|++||+.|  ++.|..|+++|  ++||.|++||+.|  .+.|+.||++
T Consensus        60 ~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~  122 (129)
T 2wbt_A           60 SSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCK  122 (129)
T ss_dssp             HHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             HHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHH
Confidence            33344443 34445555555555554  33455555554  4455555555555  2335555443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.7e-17  Score=114.45  Aligned_cols=71  Identities=18%  Similarity=0.218  Sum_probs=60.2

Q ss_pred             hhHHHHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCccc
Q psy4688         264 KYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHL  343 (388)
Q Consensus       264 ~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~  343 (388)
                      ...|..|+++|.++++|.|++|++.|.....|..             .++|.|++|++.|.+...|..|+++|+++++|.
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~   69 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG   69 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSS
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCC
Confidence            4567788889999999999999999988887764             357889999999999999999988888888888


Q ss_pred             CCcc
Q psy4688         344 CKVC  347 (388)
Q Consensus       344 C~~C  347 (388)
                      |++|
T Consensus        70 C~~C   73 (73)
T 2ctu_A           70 PSSG   73 (73)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8887

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.57  E-value=1.3e-16  Score=123.20  Aligned_cols=116  Identities=18%  Similarity=0.259  Sum_probs=68.0

Q ss_pred             hhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCC------ChhHHHHHHhhcCCCCCcccc
Q psy4688         210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYP------NKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       210 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~------~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      .++.+.++|.|...+...  ...+..+.+.+....   ....+.|++|++.|.      ....|..|+ .|++++||.|+
T Consensus         5 ~~~~~~k~~~~~~k~~~~--~~s~ee~~~~~~l~~---~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~   78 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIFI--HVTLEELKRYHQLTP---EQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCP   78 (129)
T ss_dssp             CCCTTCCGGGGCSSCEEE--ECCHHHHHHHTTSCH---HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECT
T ss_pred             hhcccccccccccCCeee--eecHHhhhccccCCh---hhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECC
Confidence            356777888777654332  223344433332211   122467777776655      445555555 46666777777


Q ss_pred             ccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         284 ICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       284 ~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +||+.|.....|..|+ ..|       .+||.|++|++.|.+.+.|..|+++|||+
T Consensus        79 ~C~k~f~~~~~l~~H~-~~H-------~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           79 LCLMPFSSSVSLKQHI-RYT-------EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TTCCEESSHHHHHHHH-HHT-------CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCcccCCHhHHHHHH-HHC-------CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            7777777766666663 333       24567777777777777777777666664

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.9e-15  Score=103.05  Aligned_cols=60  Identities=22%  Similarity=0.306  Sum_probs=50.0

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYC  369 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~  369 (388)
                      +.++|+|++|++.|.+...|..|+++|+++++|.|++|++.|  +..|..||++|++++|..
T Consensus         6 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            6 SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            457888888888888888888888888888888888888888  567888888888888753

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=3.8e-15  Score=103.60  Aligned_cols=66  Identities=32%  Similarity=0.631  Sum_probs=56.9

Q ss_pred             hhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCccc
Q psy4688         211 VHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHIC  282 (388)
Q Consensus       211 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  282 (388)
                      .+.++++|.|++|++.|.+...|..|+++|++.+      +|.|++|++.|.....|..|+++|++++||.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~------~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEK------PYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSC------SEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCc------CeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3567788999999999999999999998887654      68999999999999999999999999998887

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.5e-15  Score=110.97  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=41.9

Q ss_pred             CCccccCCCccccc-ChhhHHhHHhhhcC-CCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         311 IEKFKCDLCDKEFF-EKKKLNKHKNWAHG-DKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       311 ~~~~~C~~C~k~F~-~~~~L~~H~~~hh~-~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      .++|.|++|++.|. ++..|..|+++|++ +++|.|++|++.|  +..|+.||++|++++|+.-
T Consensus        22 ~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~   85 (98)
T 2gqj_A           22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA   85 (98)
T ss_dssp             TSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCC
T ss_pred             CCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCC
Confidence            35677777777777 77777777777776 7777777777777  4567777777777776543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=4.3e-15  Score=108.18  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=62.1

Q ss_pred             hCCCCcccCCCCcccCCChhHHHHHHHH-hccCCcccccCcccccccCCcCCChhHHHHH-HhhcCCCCCcccccccc
Q psy4688         212 HTSVRKYGCDECGKMLKSRDSLNTHKKI-QHEGKKVKVKYEYECDYCGAKYPNKYTLSDH-ISGHTGIPNHICKICNK  287 (388)
Q Consensus       212 h~~~~~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H-~~~H~~~~~~~C~~C~k  287 (388)
                      -.+++||.|++||+.|...+.|..|++. |.+..   ...+|.|++||+.|.+...|..| +++|+|++||.|.++..
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~---~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVV---LNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCC---CSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCC---CCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            3688999999999999999999999985 53211   12379999999999999999999 89999999999998543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.53  E-value=4.7e-15  Score=96.62  Aligned_cols=54  Identities=24%  Similarity=0.453  Sum_probs=48.9

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGER  366 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~  366 (388)
                      ||.|++|++.|.+...|..|+++|+++++|.|++|++.|  ++.|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            588999999999999999999999999999999999998  677999999998876

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=6.5e-15  Score=106.71  Aligned_cols=58  Identities=21%  Similarity=0.355  Sum_probs=40.5

Q ss_pred             CccccCCCcccc-cChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHH-HHHhcCCCCccc
Q psy4688         312 EKFKCDLCDKEF-FEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQH-MITHTGERKYCC  370 (388)
Q Consensus       312 ~~~~C~~C~k~F-~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H-~~~H~~~~~~~C  370 (388)
                      ++|.|++|++.| .++..|..|+++| ++++|.|++||+.|  ++.|+.| |++|+++..|.+
T Consensus        33 ~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           33 GSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             SCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSCSC
T ss_pred             CCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCCCC
Confidence            456777777777 6777777777777 77777777777777  4567777 777776544443

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1e-14  Score=99.97  Aligned_cols=57  Identities=26%  Similarity=0.447  Sum_probs=48.6

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERK  367 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~  367 (388)
                      .++|.|++|++.|.+...|..|+++|+++++|.|++|++.|  +..|..|+++|+++.+
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            57888888999999999999999888888899999999888  5678899998888753

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=8e-15  Score=107.07  Aligned_cols=78  Identities=13%  Similarity=0.211  Sum_probs=67.8

Q ss_pred             cCCchHHHHhHHhhhCCCCcccCCCCcccCC-ChhHHHHHHHHhcc-CCcccccCcccccccCCcCCChhHHHHHHhhcC
Q psy4688         198 YRNPRNMRKHLRRVHTSVRKYGCDECGKMLK-SRDSLNTHKKIQHE-GKKVKVKYEYECDYCGAKYPNKYTLSDHISGHT  275 (388)
Q Consensus       198 f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~-~~~~l~~H~~~~~~-~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  275 (388)
                      +.....+..|+ .+|.++++|.|++|++.|. +...|..|+++|++ .+      +|.|++|++.|.++..|..|+++|+
T Consensus         6 ~~~~~~~~~h~-~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~------~~~C~~C~k~F~~~~~L~~H~~~h~   78 (98)
T 2gqj_A            6 SGPGGPEEQWQ-RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQD------ALKCQHCRKQFKSKAGLNYHTMAEH   78 (98)
T ss_dssp             CCCCCSCSHHH-HTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHH------HHSCSSSCCCCSCHHHHHHHHHHHS
T ss_pred             CCCCCcHHHHH-HHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCC------CEECCCCCCccCCHHHHHHHHHHHc
Confidence            44555667784 6799999999999999999 99999999999986 33      7999999999999999999999999


Q ss_pred             CCCCccc
Q psy4688         276 GIPNHIC  282 (388)
Q Consensus       276 ~~~~~~C  282 (388)
                      +++|..-
T Consensus        79 ~~kp~~~   85 (98)
T 2gqj_A           79 SAKPSDA   85 (98)
T ss_dssp             CSCSSCC
T ss_pred             CCCCCCC
Confidence            9887543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.51  E-value=1.7e-14  Score=99.45  Aligned_cols=64  Identities=28%  Similarity=0.617  Sum_probs=54.3

Q ss_pred             hhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCc
Q psy4688         211 VHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNH  280 (388)
Q Consensus       211 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  280 (388)
                      .+.++++|.|++|++.|.+...|..|+++|++.+      +|+|++|++.|.+...|..|+++|++++||
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~------~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK------PYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCC------SEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCC------CEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            4567788999999999999999999988887654      688999999999999999999999888775

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.50  E-value=1e-14  Score=94.96  Aligned_cols=54  Identities=30%  Similarity=0.431  Sum_probs=43.8

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTG  364 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~  364 (388)
                      .++|+|++|++.|.+...|..|+++|++++||.|++|++.|  +..|..|+++|++
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            36788999999999999999999988888889999999888  5678889888764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=3.4e-14  Score=102.88  Aligned_cols=79  Identities=15%  Similarity=0.295  Sum_probs=65.5

Q ss_pred             cccCCchHHHHhHHhhhCCCCcccCCCCcccC-CChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHH-Hhh
Q psy4688         196 RDYRNPRNMRKHLRRVHTSVRKYGCDECGKML-KSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDH-ISG  273 (388)
Q Consensus       196 ~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f-~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H-~~~  273 (388)
                      ..|.....|..|. ..|.++++|.|++|++.| .+...|..|+++| +++      +|.|++||+.|..+..|..| +++
T Consensus        14 ~~~~~~~~~~~~~-~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k------~~~C~~Cgk~F~~~~~L~~H~~~~   85 (96)
T 2ctd_A           14 PVYAAGSLEEQWY-LEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQE------MFTCHHCGKQLRSLAGMKYHVMAN   85 (96)
T ss_dssp             CSSCTTCHHHHHH-HHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCC------CCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHH-HHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCC------CeECCCCCCeeCCHHHHHHHhHHh
Confidence            3566777888885 567788899999999999 9999999999998 544      79999999999999999999 888


Q ss_pred             cCCCCCccc
Q psy4688         274 HTGIPNHIC  282 (388)
Q Consensus       274 H~~~~~~~C  282 (388)
                      |++++.|.+
T Consensus        86 H~~~p~~~~   94 (96)
T 2ctd_A           86 HNSLPSGPS   94 (96)
T ss_dssp             TCCCSSCSC
T ss_pred             cCCCCCCCC
Confidence            987655443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=4.1e-15  Score=103.44  Aligned_cols=67  Identities=25%  Similarity=0.510  Sum_probs=40.5

Q ss_pred             HHHHhhcCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcC
Q psy4688         268 SDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       268 ~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      ..|+++|++++||.|++|++.|.....|..|+...|..    ..++|+|++|++.|.++..|..|++++|+
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~----~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTE----NVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS----SCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCC----CCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            45666666666666666666666666666664434421    12456666666666666666666666554

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=3.3e-15  Score=103.96  Aligned_cols=58  Identities=17%  Similarity=0.342  Sum_probs=48.4

Q ss_pred             CCCccccCCCcccccChhhHHhHHhh-hcCC-CcccCCcchhhH--HhHHHHHHHHh-cCCCC
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNW-AHGD-KFHLCKVCGAKI--KGSLKQHMITH-TGERK  367 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~-hh~~-~~~~C~~C~~~f--~~~L~~H~~~H-~~~~~  367 (388)
                      .+++|.|++|++.|.+...|..|++. |.++ ++|.|++|++.|  +..|..|+++| .++.|
T Consensus        12 ~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A           12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            36789999999999999999999985 4443 899999999999  67899999975 44555

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.4e-14  Score=103.18  Aligned_cols=60  Identities=25%  Similarity=0.285  Sum_probs=54.1

Q ss_pred             CccccCCCcccccChhhHHhHHhh-hcCCCc--------ccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNW-AHGDKF--------HLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~-hh~~~~--------~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      ..|+|++|++.|.+...|..|+++ |.++++        |.|++|++.|  +..|..||++|+|++||.|+
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            357899999999999999999998 777777        9999999999  67799999999999999996

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=3.3e-14  Score=93.57  Aligned_cols=55  Identities=24%  Similarity=0.566  Sum_probs=46.6

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHH-HHhcCCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHM-ITHTGER  366 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~-~~H~~~~  366 (388)
                      +||.|++|++.|.+...|..|+++|+++++|.|++|++.|  ++.|..|+ ++|+|+.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            3688999999999999999999998889999999999888  56789997 6787753

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=4.7e-14  Score=96.59  Aligned_cols=63  Identities=32%  Similarity=0.666  Sum_probs=50.9

Q ss_pred             hhhCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCC
Q psy4688         210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIP  278 (388)
Q Consensus       210 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~  278 (388)
                      .+|.++++|.|++|++.|.....|..|+++|++.+      +|.|++|++.|.+...|..|+++|+++.
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~------~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEK------PYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSC------CEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCC------CeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            45778888888888888888888888888877544      6888888888888888888888887654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=9.3e-14  Score=94.55  Aligned_cols=61  Identities=21%  Similarity=0.298  Sum_probs=53.4

Q ss_pred             CCCCccccccchhccCCchHHHHHHhhcCCCCCccCCccccccCChHHHHHHHhhhccccc
Q psy4688         100 SVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKV  160 (388)
Q Consensus       100 ~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  160 (388)
                      +..++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++|+++++
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            3457899999999999999999999999999999999999999999999999999887654

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.5e-15  Score=104.51  Aligned_cols=70  Identities=19%  Similarity=0.329  Sum_probs=60.1

Q ss_pred             cccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCc
Q psy4688         291 CAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKY  368 (388)
Q Consensus       291 ~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~  368 (388)
                      +...|..|+ +.|     .+.++|.|++|++.|.+...|..       +++|.|++||+.|  ++.|..|+++|+|++||
T Consensus         2 ~~~~l~~H~-~~h-----~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~   68 (73)
T 2ctu_A            2 SSGSSGKRQ-KIH-----LGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTS   68 (73)
T ss_dssp             CCCSCCCCC-CCC-----CCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCS
T ss_pred             cchhHHHHH-HHh-----CCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCC
Confidence            346677774 344     23579999999999999999988       7899999999999  56799999999999999


Q ss_pred             ccccc
Q psy4688         369 CCHIC  373 (388)
Q Consensus       369 ~C~~C  373 (388)
                      .|++|
T Consensus        69 ~C~~C   73 (73)
T 2ctu_A           69 GPSSG   73 (73)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            99998

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.43  E-value=7.8e-14  Score=97.80  Aligned_cols=57  Identities=19%  Similarity=0.434  Sum_probs=51.0

Q ss_pred             CCccccccchhccCCchHHHHHHhhcCCCCCccCCccccccCChHHHHHHHh-hhccc
Q psy4688         102 SKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL-LHEQE  158 (388)
Q Consensus       102 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~  158 (388)
                      .++|.|++|++.|.++..|.+|+++|++++||.|++|++.|.+...|.+|++ +|.++
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            4679999999999999999999999999999999999999999999999974 56543

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.43  E-value=7.3e-14  Score=90.85  Aligned_cols=55  Identities=36%  Similarity=0.669  Sum_probs=47.8

Q ss_pred             CCccccccchhccCCchHHHHHHhhcCCCCCccCCccccccCChHHHHHHHhhhc
Q psy4688         102 SKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHE  156 (388)
Q Consensus       102 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  156 (388)
                      .++|.|++|++.|.+...|..|+++|++++||.|++|++.|.+...|..|+++|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            3678999999999999999999999999999999999999999999999998875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=5.3e-14  Score=94.55  Aligned_cols=63  Identities=16%  Similarity=0.391  Sum_probs=48.8

Q ss_pred             HhhhCCCCcccCCCCcccCCChhHHHHHHHHhc-cCCcccccCcccccccCCcCCChhHHHHHHhhcCC
Q psy4688         209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQH-EGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTG  276 (388)
Q Consensus       209 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~-~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  276 (388)
                      ...|.+++||.|++|++.|.+...|..|++++| .+.     .+|.|++|++.|.+...|..|+++|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~-----~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV-----KVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSC-----CCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCC-----cCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            356778888888888888888888888888744 222     268888888888888888888887765

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=6.5e-14  Score=96.20  Aligned_cols=56  Identities=27%  Similarity=0.578  Sum_probs=43.2

Q ss_pred             CCCCCccccC--CCcccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhc
Q psy4688         308 GVPIEKFKCD--LCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHT  363 (388)
Q Consensus       308 ~~~~~~~~C~--~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~  363 (388)
                      ....++|.|+  .|++.|.+...|..|+++|+++++|.|++||+.|  ++.|..|+++|+
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            3345778886  4888888888888888888888888888888877  566888887764

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.43  E-value=1.1e-13  Score=89.95  Aligned_cols=55  Identities=24%  Similarity=0.617  Sum_probs=46.9

Q ss_pred             ccccccchhccCCchHHHHHHhhcCCCCCccCCccccccCChHHHHHHHhhhccc
Q psy4688         104 HFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQE  158 (388)
Q Consensus       104 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  158 (388)
                      ||.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++|+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            5788888888888888888888888888888888888888888888888888654

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1.2e-13  Score=96.30  Aligned_cols=61  Identities=20%  Similarity=0.317  Sum_probs=45.5

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcC---CCcccCCcchhhH--HhHHHHHH-HHhcCCCCcccc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHG---DKFHLCKVCGAKI--KGSLKQHM-ITHTGERKYCCH  371 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~---~~~~~C~~C~~~f--~~~L~~H~-~~H~~~~~~~C~  371 (388)
                      +++|+|++|++.|.+...|..|+++|++   +++|.|++|++.|  +..|..|+ +.|.++++..-.
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A            5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence            5678888888888888888888888775   7788888888877  56688887 467777765543

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=5.9e-13  Score=96.54  Aligned_cols=68  Identities=24%  Similarity=0.310  Sum_probs=43.0

Q ss_pred             ccccccCCcCCChhHHHHHHhh-cCCCCCccccccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHH
Q psy4688         252 YECDYCGAKYPNKYTLSDHISG-HTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLN  330 (388)
Q Consensus       252 ~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~  330 (388)
                      |.|++|++.|.+...|..|+++ |.++++..+..|                          .+|.|++|++.|.++..|.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c--------------------------~~~~C~~C~k~f~~~~~L~   79 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC--------------------------YWEECPREGKSFKAKYKLV   79 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCC--------------------------CCTTCSSTTCCCSSHHHHH
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccce--------------------------eccCCCCCCcccCCHHHHH
Confidence            4566666666666666666665 555443322222                          2366777777777777777


Q ss_pred             hHHhhhcCCCcccCC
Q psy4688         331 KHKNWAHGDKFHLCK  345 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~  345 (388)
                      .|+++|++++||.|+
T Consensus        80 ~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           80 NHIRVHTGEKSGPSS   94 (95)
T ss_dssp             HHHHHHHTCCCCSSC
T ss_pred             HHHHhcCCCCCCCCC
Confidence            777777777777775

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=1.7e-13  Score=94.06  Aligned_cols=68  Identities=28%  Similarity=0.585  Sum_probs=56.1

Q ss_pred             hHHHHhHHhhhCCCCcccCC--CCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcC
Q psy4688         202 RNMRKHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHT  275 (388)
Q Consensus       202 ~~l~~H~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  275 (388)
                      ..|..|+..+|.++++|.|+  .|++.|.+...|..|+++|.+.+      +|.|++||+.|.+...|..|+++|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~------~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQK------PFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ----CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCC------CEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCC------CeECCCCCchhCCHHHHHHHHHhcC
Confidence            45666777788899999997  59999999999999999888655      6999999999999999999998874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=2.2e-13  Score=91.46  Aligned_cols=56  Identities=20%  Similarity=0.339  Sum_probs=48.9

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCC-cchhhH--HhHHHHHHHHhcCCCC
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK-VCGAKI--KGSLKQHMITHTGERK  367 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~-~C~~~f--~~~L~~H~~~H~~~~~  367 (388)
                      +.++|+|++|++.|. .+.|..|+++ .+++||.|+ +||+.|  ++.|..|+++|.+.+|
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            457899999999999 9999999998 899999999 999988  5679999999887765

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.36  E-value=1.2e-13  Score=85.38  Aligned_cols=42  Identities=31%  Similarity=0.375  Sum_probs=23.4

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44555555555555555555  3445555555555555555554

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=5e-13  Score=87.81  Aligned_cols=53  Identities=25%  Similarity=0.525  Sum_probs=30.1

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccchhhcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTH  303 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~H  303 (388)
                      +|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+...|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H   54 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH   54 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHc
Confidence            45666666666666666666666665555555555555555555555543344

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=6.8e-13  Score=92.31  Aligned_cols=67  Identities=19%  Similarity=0.493  Sum_probs=53.7

Q ss_pred             hCCCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHH-hhcCCCCCcc
Q psy4688         212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHI-SGHTGIPNHI  281 (388)
Q Consensus       212 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~~~~~~  281 (388)
                      |+++++|.|++|++.|.+...|..|+++|++..   ...+|.|++|++.|.....|..|+ ..|.++.+..
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~---~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETV---AALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHT---TTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccC---CCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            678899999999999999999999999887521   122689999999999999999998 5566665543

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.3e-13  Score=85.31  Aligned_cols=42  Identities=29%  Similarity=0.404  Sum_probs=24.8

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55555556666666666655  4456666666666666666655

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1e-13  Score=85.72  Aligned_cols=42  Identities=19%  Similarity=0.297  Sum_probs=23.9

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45555555555555555555  3445555555656666666554

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.7e-13  Score=84.72  Aligned_cols=43  Identities=21%  Similarity=0.337  Sum_probs=27.3

Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      +|+++|.++++|.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            355666666666666666666  4556666666666666666665

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.5e-13  Score=85.00  Aligned_cols=42  Identities=29%  Similarity=0.434  Sum_probs=24.6

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.++++|.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555555666666666555  3456666666666666666655

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.5e-13  Score=85.01  Aligned_cols=42  Identities=26%  Similarity=0.325  Sum_probs=23.5

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555  3445555555555555555554

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.8e-13  Score=84.63  Aligned_cols=42  Identities=31%  Similarity=0.414  Sum_probs=23.6

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45555555555555555555  3445555555555555555554

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.5e-13  Score=85.04  Aligned_cols=42  Identities=26%  Similarity=0.366  Sum_probs=24.3

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.++++|.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            45555555556666665555  3445666666666666666555

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.5e-13  Score=85.03  Aligned_cols=42  Identities=26%  Similarity=0.462  Sum_probs=23.7

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.++++|.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45555555555555555555  3445555555555555665554

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.7e-13  Score=84.70  Aligned_cols=42  Identities=24%  Similarity=0.453  Sum_probs=22.5

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555555555555  3445555555555555555554

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=5e-13  Score=89.71  Aligned_cols=56  Identities=20%  Similarity=0.553  Sum_probs=37.4

Q ss_pred             CCccccccchhccCCchHHHHHHhh-c-CCCCCccCCccccccCChHHHHHHHhhhcc
Q psy4688         102 SKHFECNYCHAKFSNKSLLSDHISS-H-TGLKNYKCHVCDKAYSCRKALKTHTLLHEQ  157 (388)
Q Consensus       102 ~~~~~C~~C~~~f~~~~~L~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  157 (388)
                      .++|.|+.|++.|.+...|..|++. | .+++||.|+.|++.|.+...|..|++++++
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            3566666666666666666666665 5 466677777777777777777777666653

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.34  E-value=1.4e-13  Score=85.08  Aligned_cols=42  Identities=29%  Similarity=0.392  Sum_probs=22.6

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44455555555555555555  3445555555555555555554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.7e-13  Score=84.70  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=24.9

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            55555556666666666655  3456666666666666666655

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1.9e-13  Score=83.66  Aligned_cols=42  Identities=24%  Similarity=0.251  Sum_probs=21.9

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  +++|..|+++|+|++||.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34445555555555555555  3445555555555555555554

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.4e-13  Score=85.05  Aligned_cols=42  Identities=26%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            44445555555555555554  3445555555555555555544

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.4e-13  Score=85.12  Aligned_cols=42  Identities=24%  Similarity=0.318  Sum_probs=21.2

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.++++|.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44444455555555555554  3345555555555555555544

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.3e-13  Score=85.24  Aligned_cols=36  Identities=25%  Similarity=0.477  Sum_probs=18.6

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             cCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            445555555555555555555555555555555444

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.6e-13  Score=84.83  Aligned_cols=42  Identities=26%  Similarity=0.382  Sum_probs=22.2

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            44455555555555555555  3445555555555555555554

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.34  E-value=1.3e-13  Score=85.29  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=18.3

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            445555555555555555555555555555555444

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.5e-13  Score=85.02  Aligned_cols=42  Identities=26%  Similarity=0.407  Sum_probs=21.3

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44444555555555555554  3345555555555555555544

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.8e-13  Score=84.66  Aligned_cols=42  Identities=29%  Similarity=0.421  Sum_probs=22.7

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44555555555555555555  3445555555555555555554

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.33  E-value=1.3e-13  Score=85.33  Aligned_cols=42  Identities=24%  Similarity=0.227  Sum_probs=20.1

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44444444444444444444  3344445555555555555444

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.7e-13  Score=84.78  Aligned_cols=42  Identities=29%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44444444445555554444  3344555555555555555444

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.1e-13  Score=84.26  Aligned_cols=42  Identities=26%  Similarity=0.402  Sum_probs=23.0

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44555555555555555555  3445555555555555555554

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.33  E-value=2.3e-13  Score=84.14  Aligned_cols=36  Identities=31%  Similarity=0.440  Sum_probs=17.6

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445555555555555555544444444444444444

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.5e-13  Score=84.98  Aligned_cols=42  Identities=31%  Similarity=0.415  Sum_probs=20.4

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.++++|.|++||+.|  +++|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44444444445555555444  3345555555555555555444

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.7e-13  Score=84.72  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=21.2

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            44444455555555555554  3345555555555555555544

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.4e-13  Score=85.09  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44444445555555555444  3345555555555555555544

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.8e-13  Score=84.64  Aligned_cols=36  Identities=28%  Similarity=0.456  Sum_probs=17.8

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ++|+|++|++.|.++..|..|+++|++++||.|++|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            445555555555555555555544444444444443

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.1e-13  Score=83.50  Aligned_cols=42  Identities=29%  Similarity=0.345  Sum_probs=21.1

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34444455555555555554  3345555555555555555544

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.1e-13  Score=84.33  Aligned_cols=42  Identities=26%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44444445555555555444  3345555555555555555544

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.3e-13  Score=84.13  Aligned_cols=42  Identities=31%  Similarity=0.386  Sum_probs=23.3

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.++++|.|++||+.|  +++|..|+++|++++||.|++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            44555555555555555555  3445555555555555555554

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.9e-13  Score=84.53  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44444445555555555544  3345555555555555555544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.9e-13  Score=84.52  Aligned_cols=42  Identities=26%  Similarity=0.413  Sum_probs=21.6

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44445555555555555554  3345555555555555555544

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.5e-13  Score=83.94  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=18.4

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ++|.|++|++.|.++..|..|+++|++++||.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            445555555555555555555555555555555444

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.2e-13  Score=84.20  Aligned_cols=42  Identities=26%  Similarity=0.429  Sum_probs=22.0

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.++++|.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555555555555  3445555555555555555554

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.9e-13  Score=83.65  Aligned_cols=37  Identities=22%  Similarity=0.378  Sum_probs=20.1

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      +++|.|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A           10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3455555555555555555555555555555555544

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.8e-13  Score=83.69  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=17.9

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ++|.|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            445555555555555555555554444444444444

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.5e-13  Score=83.94  Aligned_cols=36  Identities=25%  Similarity=0.433  Sum_probs=18.8

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             cCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            445555555555555555555555555555555544

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.7e-13  Score=83.17  Aligned_cols=42  Identities=24%  Similarity=0.365  Sum_probs=22.7

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555555555555555  3445555555555555555554

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.31  E-value=2.7e-13  Score=83.84  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=17.6

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ++|.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             cCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            445555555555555555544444444444444444

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=3.8e-13  Score=83.11  Aligned_cols=42  Identities=21%  Similarity=0.338  Sum_probs=21.0

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|++++||.|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34444455555555555544  3345555555555555555544

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.7e-13  Score=83.79  Aligned_cols=42  Identities=26%  Similarity=0.359  Sum_probs=22.2

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.++++|.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555555555555  3445555555555555555543

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.4e-13  Score=82.80  Aligned_cols=42  Identities=26%  Similarity=0.290  Sum_probs=21.7

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            34444555555555555555  3445555555555555555554

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.30  E-value=4e-13  Score=83.03  Aligned_cols=42  Identities=21%  Similarity=0.138  Sum_probs=20.3

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.++++|.|++|++.|  +..|..|+++|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34444444455555555444  3345555555555555555444

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3e-13  Score=83.59  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=17.8

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            445555555555555555555544444444444444

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.6e-13  Score=84.81  Aligned_cols=37  Identities=24%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .++|.|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A           10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4566666666666666666666666666666666655

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7.5e-13  Score=81.75  Aligned_cols=42  Identities=29%  Similarity=0.396  Sum_probs=23.7

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44555555555555555555  3445556556666666666553

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=7.4e-13  Score=82.20  Aligned_cols=42  Identities=29%  Similarity=0.316  Sum_probs=20.7

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHH-HhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMI-THTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~-~H~~~~~~~C~~C  373 (388)
                      |+++|.+++||.|++||+.|  ++.|..|++ +|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            44444445555555555544  334555555 5555555555544

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.26  E-value=8.7e-13  Score=84.52  Aligned_cols=41  Identities=24%  Similarity=0.421  Sum_probs=24.0

Q ss_pred             CCccccCCCcccccChhhHHhHHh-hhcCCCcccCCcchhhH
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKN-WAHGDKFHLCKVCGAKI  351 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~-~hh~~~~~~C~~C~~~f  351 (388)
                      .++|.|++|++.|.+...|..|++ +|.+++||.|++|++.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F   51 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP   51 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSS
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Confidence            455666666666666666666654 45555555555555554

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.26  E-value=9.4e-13  Score=84.38  Aligned_cols=50  Identities=16%  Similarity=0.221  Sum_probs=41.2

Q ss_pred             cccccChhhHHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcc
Q psy4688         320 DKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYC  369 (388)
Q Consensus       320 ~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~  369 (388)
                      ++.|.....|..|+++|.++++|.|++||+.|  ++.|..|+++|+|++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            36778888888888888888888888888888  567888888888888874

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.25  E-value=1.2e-12  Score=80.79  Aligned_cols=41  Identities=27%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHI  372 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~  372 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|+|++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45555555566666666555  345666666666666666653

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.4e-12  Score=80.56  Aligned_cols=40  Identities=30%  Similarity=0.467  Sum_probs=22.7

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|+|++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            45555555555555555555  34455555556666666554

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.6e-12  Score=80.26  Aligned_cols=41  Identities=37%  Similarity=0.468  Sum_probs=22.6

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHI  372 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~  372 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|+|++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44555555555555555555  344555555555555555543

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.7e-12  Score=80.12  Aligned_cols=41  Identities=27%  Similarity=0.417  Sum_probs=23.7

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHI  372 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~  372 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            45555555666666666555  345666666666666666653

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.8e-12  Score=80.04  Aligned_cols=40  Identities=30%  Similarity=0.384  Sum_probs=23.3

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|+|++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            45555555566666666555  34466666666666666665

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.7e-12  Score=80.14  Aligned_cols=40  Identities=30%  Similarity=0.399  Sum_probs=20.0

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|+|++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            44444455555555555544  33455555555555555554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.4e-12  Score=80.46  Aligned_cols=34  Identities=26%  Similarity=0.515  Sum_probs=16.9

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      ++|+|++|++.|.+++.|..|+++|++++||.|+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             cCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            4455555555555555555555444444444443

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.22  E-value=2e-12  Score=78.07  Aligned_cols=38  Identities=29%  Similarity=0.444  Sum_probs=18.7

Q ss_pred             HhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         333 KNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       333 ~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      +++|.++++|.|++||+.|  ++.|..|+++|+|++||.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            3444445555555555544  3345555555555555554

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.6e-12  Score=80.29  Aligned_cols=34  Identities=26%  Similarity=0.528  Sum_probs=16.8

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      ++|.|++|++.|.+++.|..|+++|++++||.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4455555555555555555554444444444443

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.7e-12  Score=80.09  Aligned_cols=34  Identities=26%  Similarity=0.532  Sum_probs=17.0

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      ++|.|++|++.|.+.+.|..|+++|++++||.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            4455555555555555555555544444444443

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.5e-12  Score=80.33  Aligned_cols=40  Identities=28%  Similarity=0.443  Sum_probs=20.6

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44445555555555555554  34455555555555555554

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.4e-12  Score=79.43  Aligned_cols=40  Identities=28%  Similarity=0.405  Sum_probs=21.4

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            44455555555555555555  34455555555555555554

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.6e-12  Score=80.26  Aligned_cols=40  Identities=28%  Similarity=0.394  Sum_probs=19.4

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            44444444455555555444  33455555555555555554

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.7e-12  Score=80.07  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=16.6

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      ++|.|++|++.|.++..|..|+++|++++||.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3445555555555544444444444444444443

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.7e-12  Score=80.12  Aligned_cols=40  Identities=30%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|+|++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            44444555555555555554  34455555555555555554

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.7e-12  Score=80.10  Aligned_cols=40  Identities=30%  Similarity=0.387  Sum_probs=19.5

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|+|++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44444444555555555444  33455555555555555554

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.21  E-value=5.6e-12  Score=86.11  Aligned_cols=52  Identities=29%  Similarity=0.597  Sum_probs=37.3

Q ss_pred             CCccccCC--CcccccChhhHHhHHhhhcCCCcccCCc--chhhH--HhHHHHHHHHh
Q psy4688         311 IEKFKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCKV--CGAKI--KGSLKQHMITH  362 (388)
Q Consensus       311 ~~~~~C~~--C~k~F~~~~~L~~H~~~hh~~~~~~C~~--C~~~f--~~~L~~H~~~H  362 (388)
                      .++|.|++  |++.|.+...|..|+++|+++++|.|++  |++.|  +..|..|+++|
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            46788877  8888888877777777777777777754  77766  45566776654

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.1e-12  Score=79.67  Aligned_cols=40  Identities=30%  Similarity=0.424  Sum_probs=23.0

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45555555555555555555  34455666666666666654

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.8e-12  Score=79.99  Aligned_cols=40  Identities=28%  Similarity=0.473  Sum_probs=20.6

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            44445555555555555555  34455555555555555554

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3e-12  Score=77.26  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=19.8

Q ss_pred             HhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         333 KNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       333 ~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      +++|.+++||.|++|++.|  ++.|..|+++|+|++||.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3444555555555555555  3445555555555555555

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.21  E-value=4.2e-12  Score=77.92  Aligned_cols=38  Identities=18%  Similarity=0.356  Sum_probs=22.5

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcch
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCG  348 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~  348 (388)
                      +++|.|++|++.|.+++.|..|+++|+++++|.|++||
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            8 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            34566666666666666666666555555555555554

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.7e-12  Score=80.14  Aligned_cols=40  Identities=30%  Similarity=0.497  Sum_probs=19.4

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            44444444455555555444  33455555555555555554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.8e-12  Score=80.05  Aligned_cols=40  Identities=33%  Similarity=0.456  Sum_probs=19.8

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|++++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            44444445555555555544  33455555555555555554

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.8e-12  Score=79.10  Aligned_cols=40  Identities=25%  Similarity=0.438  Sum_probs=20.5

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.++++|.|++||+.|  ++.|..|+++|+|++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            44445555555555555554  34455555555555555554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.8e-12  Score=79.08  Aligned_cols=40  Identities=33%  Similarity=0.468  Sum_probs=22.9

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            45555555555555555555  34455566666666666554

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.20  E-value=7.7e-13  Score=87.39  Aligned_cols=47  Identities=11%  Similarity=0.330  Sum_probs=36.0

Q ss_pred             HHhHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccccchhhH
Q psy4688         329 LNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKLR  378 (388)
Q Consensus       329 L~~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k~f~  378 (388)
                      |..|+++|.|++||.|++||+.|  .+.|.   ++|+|++||.|++||+.|.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~   50 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVE   50 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCE
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccc
Confidence            45677778888888888888887  33454   7788888888888888883

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3e-12  Score=78.97  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=24.1

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .++|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4566666666666666666666666666666666655

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.9e-12  Score=78.19  Aligned_cols=39  Identities=31%  Similarity=0.399  Sum_probs=21.2

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|+|++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            44555555555555555555  3445555555555555555

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.7e-12  Score=79.19  Aligned_cols=37  Identities=27%  Similarity=0.411  Sum_probs=23.9

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .++|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A           10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4566666666666666666666666666666666655

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.5e-12  Score=78.47  Aligned_cols=39  Identities=33%  Similarity=0.424  Sum_probs=19.0

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      |+++|.++++|.|++||+.|  ++.|..|+++|+|++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            44444444555555555444  3345555555555555554

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=3.7e-12  Score=79.32  Aligned_cols=40  Identities=25%  Similarity=0.397  Sum_probs=31.8

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchh
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA  349 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~  349 (388)
                      ..++|.|++|++.|.+...|..|+++|++++||.|++|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            3567888888888888888888888888888888888774

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.7e-12  Score=79.21  Aligned_cols=35  Identities=23%  Similarity=0.436  Sum_probs=19.2

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      .++|+|++|++.|.++..|..|+++|++++||.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A           10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            34555555555555555555555555555555554

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.9e-12  Score=79.05  Aligned_cols=40  Identities=20%  Similarity=0.392  Sum_probs=22.2

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.++++|.|++|++.|  ++.|..|+++|++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44555555555555555555  34455555555555555554

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.3e-12  Score=78.26  Aligned_cols=40  Identities=35%  Similarity=0.438  Sum_probs=21.4

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            44455555555555555555  34455555555555555554

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.3e-11  Score=82.58  Aligned_cols=56  Identities=20%  Similarity=0.363  Sum_probs=34.1

Q ss_pred             CCCcccCCCCcccCCChhHHHHHHHHhccCCcccccCccccc-ccCCcCCChhHHHHHHhhcCCC
Q psy4688         214 SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECD-YCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       214 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~-~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      +.+||.|++|++.|. ...|..|+++ .+.+      +|.|+ .||+.|..+..|..|+++|...
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~------p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRL------PVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSS------EEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCc------CccCCcccCcccccHHHHHHHHHhhccc
Confidence            455666666666666 6666666665 3322      56666 6666666666666666666543

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=3.7e-12  Score=77.74  Aligned_cols=39  Identities=21%  Similarity=0.285  Sum_probs=20.2

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            44445555555555555555  3345555555555555555

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.6e-12  Score=77.81  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=19.1

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            44444445555555555444  3345555555555555554

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=4.1e-12  Score=77.50  Aligned_cols=33  Identities=18%  Similarity=0.388  Sum_probs=16.2

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC  344 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C  344 (388)
                      ++|.|++|++.|.+.+.|..|+++|.+++||.|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            345555555555555555555444444444444

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=4.1e-12  Score=78.36  Aligned_cols=34  Identities=24%  Similarity=0.460  Sum_probs=16.6

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      ++|.|++|++.|.+.+.|..|+++|++++||.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4445555555555555454444444444444443

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=1.7e-11  Score=76.25  Aligned_cols=40  Identities=25%  Similarity=0.517  Sum_probs=35.8

Q ss_pred             hcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccccch
Q psy4688         336 AHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGK  375 (388)
Q Consensus       336 hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k  375 (388)
                      +.++++|.|++|++.|  +..|..|+++|++++||.|++|||
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            5678899999999998  677999999999999999999986

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.9e-12  Score=77.31  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=19.4

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC  344 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C  344 (388)
                      +++|.|++|++.|.+.+.|..|+++|++++||.|
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3455555555555555555555555555555554

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=4e-12  Score=78.39  Aligned_cols=35  Identities=29%  Similarity=0.390  Sum_probs=18.9

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcC-CCcccCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHG-DKFHLCK  345 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~-~~~~~C~  345 (388)
                      .++|.|++|++.|.+.+.|..|+++|++ ++||.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A           10 EKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             SCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3455555555555555555555555555 5555554

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.14  E-value=7.7e-12  Score=75.43  Aligned_cols=33  Identities=18%  Similarity=0.331  Sum_probs=16.3

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC  344 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C  344 (388)
                      ++|.|++|++.|.+++.|..|+++|++++||.|
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            445555555555555555555444444444444

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=5.7e-12  Score=76.00  Aligned_cols=39  Identities=28%  Similarity=0.537  Sum_probs=19.0

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|+|++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            33444445555555555544  3345555555555555544

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.1e-12  Score=78.37  Aligned_cols=40  Identities=25%  Similarity=0.356  Sum_probs=21.2

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            44455555555555555555  34455555555555555553

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=9.8e-12  Score=75.79  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=18.4

Q ss_pred             HhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         333 KNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       333 ~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      +++|.++++|.|++|++.|  ++.|..|+++|++++||.|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            3444444445555555444  3345555555555555554

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.13  E-value=4.1e-11  Score=81.72  Aligned_cols=56  Identities=27%  Similarity=0.557  Sum_probs=50.4

Q ss_pred             CCCCcccccc--chhccCCchHHHHHHhhcCCCCCccCCc--cccccCChHHHHHHHhhh
Q psy4688         100 SVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLH  155 (388)
Q Consensus       100 ~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  155 (388)
                      +..++|.|.+  |++.|.....|..|++.|+++++|.|++  |++.|.....|..|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3457899988  9999999999999999999999999965  999999999999998765

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=6.1e-12  Score=75.88  Aligned_cols=34  Identities=18%  Similarity=0.386  Sum_probs=20.0

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC  344 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C  344 (388)
                      +++|+|++|++.|.+.+.|..|+++|++++||.|
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            3456666666666666666666655555555554

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=2.2e-11  Score=77.82  Aligned_cols=45  Identities=24%  Similarity=0.393  Sum_probs=37.7

Q ss_pred             hhcCCCcccCCcchhhH--HhHHHHHHH-HhcCCCCccccccchhhHh
Q psy4688         335 WAHGDKFHLCKVCGAKI--KGSLKQHMI-THTGERKYCCHICGKKLRG  379 (388)
Q Consensus       335 ~hh~~~~~~C~~C~~~f--~~~L~~H~~-~H~~~~~~~C~~C~k~f~~  379 (388)
                      .+.+++||.|++|++.|  +..|..|++ +|++++||.|++||+.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            35678889999999888  567999987 8999999999999998864

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.9e-12  Score=88.88  Aligned_cols=56  Identities=30%  Similarity=0.503  Sum_probs=42.9

Q ss_pred             CCCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH-HhHHHHHHHHhcCCC
Q psy4688         309 VPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI-KGSLKQHMITHTGER  366 (388)
Q Consensus       309 ~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f-~~~L~~H~~~H~~~~  366 (388)
                      .+.+++.|+.|++.| ....|..|+ .+.+++|+.|+.|++.| ...|..|+++|++++
T Consensus        13 c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A           13 CPLRLAVCQHCDLEL-SILKLKEHE-DYCGARTELCGNCGRNVLVKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCCCEECSSSCCEE-CHHHHHHHH-HHHHHCEEECSSSCCEEETTGGGTHHHHBTTBS
T ss_pred             CCCcccCCcccChHh-hHHHHHHHH-hHcCCCceEcccCCCcCcHHHHHHHHHHccCCc
Confidence            346778888888888 478888888 77788888888888777 566888888877764

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=6.7e-12  Score=77.36  Aligned_cols=35  Identities=26%  Similarity=0.504  Sum_probs=22.3

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      .++|.|++|++.|.++..|..|+++|++++||.|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A           10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             SSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45666666666666666666666666666666664

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.4e-11  Score=75.83  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=19.5

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      .++|+|++|++.|.++..|..|+++|++++||.|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            34555555555555555555555555555555554

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.4e-12  Score=77.00  Aligned_cols=33  Identities=18%  Similarity=0.377  Sum_probs=17.8

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC  344 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C  344 (388)
                      ++|.|++|++.|.+.+.|..|+++|++++||.|
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            455555555555555555555555555555554

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=2.7e-11  Score=73.37  Aligned_cols=35  Identities=31%  Similarity=0.473  Sum_probs=20.9

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      .++|.|++|++.|.+++.|..|+++|++++||.|+
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            34566666666666666666666665555555554

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=8.4e-11  Score=72.31  Aligned_cols=38  Identities=29%  Similarity=0.475  Sum_probs=35.3

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .+++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            9 GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.5e-11  Score=74.90  Aligned_cols=39  Identities=28%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      |+++|.+++||.|++|++.|  ++.|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            44445555555555555555  3445555555555555554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.2e-11  Score=74.24  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=23.0

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A           12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            56666666666666666666666666666666655

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=7.9e-11  Score=72.45  Aligned_cols=38  Identities=18%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ++++|.|++||+.|.+.+.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            9 GERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.6e-11  Score=76.35  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=21.4

Q ss_pred             CCccccC--CCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCD--LCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~--~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .++|+|+  .|++.|.++..|..|+++|.+++||.|++|
T Consensus        10 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A           10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3456665  566666666666666555555555555554

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.08  E-value=6.9e-11  Score=72.32  Aligned_cols=40  Identities=28%  Similarity=0.473  Sum_probs=37.0

Q ss_pred             hhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccccc
Q psy4688         335 WAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICG  374 (388)
Q Consensus       335 ~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~  374 (388)
                      .|.+++||.|++|++.|  ++.|..|+++|+++++|.|++||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            47789999999999999  67899999999999999999997

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=8.8e-11  Score=72.22  Aligned_cols=38  Identities=24%  Similarity=0.440  Sum_probs=35.1

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ..++|.|++|++.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            9 GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            35789999999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.07  E-value=1e-10  Score=71.94  Aligned_cols=43  Identities=26%  Similarity=0.367  Sum_probs=39.4

Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      .|+++|.++++|.|++||+.|  ++.|.+|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478889999999999999999  5779999999999999999988

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.07  E-value=3.6e-11  Score=74.02  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=21.5

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|+|++|++.|.....|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            45666666666666666666666666666666555

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1e-10  Score=71.97  Aligned_cols=37  Identities=22%  Similarity=0.414  Sum_probs=34.7

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A           10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            5789999999999999999999999999999999988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=8.4e-11  Score=72.31  Aligned_cols=37  Identities=24%  Similarity=0.388  Sum_probs=34.5

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .++|.|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A           10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5789999999999999999999999999999999988

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.07  E-value=1.1e-10  Score=71.83  Aligned_cols=38  Identities=21%  Similarity=0.336  Sum_probs=35.4

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      +.++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            9 GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35789999999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.2e-10  Score=71.60  Aligned_cols=43  Identities=21%  Similarity=0.231  Sum_probs=38.9

Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      .|+++|.+++||.|++||+.|  ++.|..|+++|++++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            377889999999999999999  6779999999999999999988

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.1e-10  Score=71.79  Aligned_cols=37  Identities=24%  Similarity=0.359  Sum_probs=34.5

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .++|.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A           10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5789999999999999999999999999999999988

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1e-10  Score=71.91  Aligned_cols=37  Identities=24%  Similarity=0.378  Sum_probs=34.9

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .++|.|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A           10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5789999999999999999999999999999999988

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.7e-11  Score=73.93  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=19.9

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            45555555555555555555555555555555554

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1e-10  Score=71.94  Aligned_cols=38  Identities=24%  Similarity=0.313  Sum_probs=35.4

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ..++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            9 GENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=9.9e-11  Score=71.22  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=34.9

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .++|+|++||+.|.+++.|..|+++|++++||.|++|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5789999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.1e-10  Score=71.83  Aligned_cols=38  Identities=18%  Similarity=0.290  Sum_probs=35.5

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .+++|+|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            9 GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1e-10  Score=71.94  Aligned_cols=38  Identities=26%  Similarity=0.243  Sum_probs=35.1

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      +.++|.|++||+.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            9 GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.1e-11  Score=73.73  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A           12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            46666666666666666666666666666666555

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.1e-11  Score=74.32  Aligned_cols=35  Identities=34%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++||+.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A           12 HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566666666666666666666666666666554

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.2e-11  Score=73.69  Aligned_cols=35  Identities=26%  Similarity=0.252  Sum_probs=21.6

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++||+.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            46666666666666666666666666666666555

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.7e-11  Score=73.47  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=21.7

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A           12 PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            46666666666666666666666666666666655

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.4e-11  Score=74.11  Aligned_cols=35  Identities=26%  Similarity=0.495  Sum_probs=21.3

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A           12 PYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45666666666666666666666666666666555

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.06  E-value=3.1e-11  Score=74.28  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=21.8

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++||+.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A           12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            46666666666666666666666666666666655

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4e-11  Score=73.82  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=18.4

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++||+.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45555555555555555555555555555555544

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.6e-11  Score=73.52  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++||+.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A           12 PYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45566666666666666666666666666666554

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.1e-10  Score=71.83  Aligned_cols=43  Identities=26%  Similarity=0.393  Sum_probs=38.8

Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      .|+++|.++++|.|++|++.|  ++.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477889999999999999998  6779999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.06  E-value=1.2e-10  Score=71.62  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=35.1

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ..++|.|++|++.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            9 GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             TSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            35789999999999999999999999999999999987

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.1e-11  Score=74.72  Aligned_cols=35  Identities=29%  Similarity=0.488  Sum_probs=23.5

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      .++|+|++|++.|.++..|..|+++|++++||.|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            45666777777776666666666666666666665

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.1e-10  Score=71.72  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=35.0

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .++|.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A           10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5789999999999999999999999999999999988

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1e-10  Score=71.90  Aligned_cols=38  Identities=24%  Similarity=0.338  Sum_probs=35.0

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      +.++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            9 GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35789999999999999999999999999999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=4.4e-11  Score=73.59  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=19.0

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++||+.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A           12 PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555555555555555544

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.1e-10  Score=71.72  Aligned_cols=38  Identities=24%  Similarity=0.370  Sum_probs=34.9

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ..++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            9 GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.3e-10  Score=71.39  Aligned_cols=38  Identities=24%  Similarity=0.391  Sum_probs=35.3

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ..++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            9 GEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.2e-10  Score=71.53  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=35.3

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ..++|.|++|++.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            9 GEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            35789999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=9.9e-11  Score=71.99  Aligned_cols=43  Identities=28%  Similarity=0.366  Sum_probs=36.6

Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      +|+++|.++++|.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477888888889999999888  5678889888999999998887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.2e-10  Score=71.60  Aligned_cols=37  Identities=24%  Similarity=0.426  Sum_probs=35.0

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A           10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5789999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.2e-10  Score=71.65  Aligned_cols=37  Identities=27%  Similarity=0.461  Sum_probs=34.0

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      +++|.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A           10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5789999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.05  E-value=1.4e-10  Score=71.34  Aligned_cols=38  Identities=24%  Similarity=0.359  Sum_probs=35.0

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .+++|+|++|++.|.++..|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            9 GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35789999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.3e-10  Score=71.48  Aligned_cols=38  Identities=24%  Similarity=0.397  Sum_probs=35.2

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ..++|.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            9 GEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.3e-10  Score=71.43  Aligned_cols=38  Identities=21%  Similarity=0.340  Sum_probs=35.6

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ..++|.|++|++.|.++..|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            9 GEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.2e-10  Score=71.59  Aligned_cols=38  Identities=24%  Similarity=0.342  Sum_probs=35.4

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      .+++|.|++|++.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            9 GEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.1e-10  Score=71.70  Aligned_cols=38  Identities=24%  Similarity=0.384  Sum_probs=35.3

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ..++|+|++|++.|.+++.|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            9 GEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.1e-10  Score=71.76  Aligned_cols=41  Identities=32%  Similarity=0.385  Sum_probs=37.3

Q ss_pred             HhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         333 KNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       333 ~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      +++|.++++|.|++|++.|  ++.|..|+++|++++||.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4568899999999999999  6789999999999999999988

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.3e-10  Score=71.38  Aligned_cols=41  Identities=29%  Similarity=0.353  Sum_probs=36.8

Q ss_pred             HhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         333 KNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       333 ~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      +++|.++++|.|++|++.|  +..|..|+++|++++||.|++|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4678899999999999998  6779999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.6e-10  Score=70.98  Aligned_cols=38  Identities=21%  Similarity=0.278  Sum_probs=35.3

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      +.++|+|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            35789999999999999999999999999999999988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.03  E-value=1.7e-10  Score=70.95  Aligned_cols=43  Identities=26%  Similarity=0.362  Sum_probs=38.9

Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      .|+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478889999999999999998  6779999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.5e-10  Score=71.12  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=34.8

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ..++|+|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            9 GEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            35789999999999999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.4e-10  Score=71.24  Aligned_cols=43  Identities=30%  Similarity=0.350  Sum_probs=38.9

Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      .|+++|.++++|.|++|++.|  ++.|..|+++|++++||.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            478889999999999999998  6779999999999999999988

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.4e-11  Score=72.56  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=20.1

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  285 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555555555555555543

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=7.2e-11  Score=70.62  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=24.3

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC  344 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C  344 (388)
                      +++|+|++|++.|.+...|..|+++|++++||.|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4567777777777777777777777777777665

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.99  E-value=1.8e-11  Score=86.58  Aligned_cols=73  Identities=16%  Similarity=0.178  Sum_probs=54.7

Q ss_pred             cccccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhHHhHHHHHHHHhcC
Q psy4688         289 YACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTG  364 (388)
Q Consensus       289 f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f~~~L~~H~~~H~~  364 (388)
                      |.....|..|.+..+.. .....++|.|++|++.|.....|..|+++|++++||.|..|...  ..|..|+++|.|
T Consensus         2 ~~~~~~lkr~~~~~~~~-~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~~--~~~~~~~~~~~~   74 (88)
T 1x6f_A            2 SSGSSGLKRDFIILGNG-PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERR--KQLLSKQKYADG   74 (88)
T ss_dssp             CCCCCCCCCCCCCCCCC-SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSCC--CCCCCCCCCCCC
T ss_pred             CCcchhhccceeecccc-ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhhH--HHHHhhhccccc
Confidence            33445566664433322 33456899999999999999999999999999999999887653  457778888887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.1e-10  Score=72.07  Aligned_cols=35  Identities=29%  Similarity=0.364  Sum_probs=19.8

Q ss_pred             cccccccCCcCCChhHHHHHHh-hcCCCCCcccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHIS-GHTGIPNHICKIC  285 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~-~H~~~~~~~C~~C  285 (388)
                      +|.|++||+.|.....|..|++ +|++++||.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A           12 PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             CEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            4555555555555555555555 5555555555554

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.99  E-value=1.4e-11  Score=81.23  Aligned_cols=43  Identities=12%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLK  296 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~  296 (388)
                      +|.|++||+.|.....|.   ++|++++||.|++||+.|....++.
T Consensus        14 ~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A           14 SFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             EEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             CccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            455555555555444443   4455555555555555555544443

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.6e-10  Score=69.38  Aligned_cols=38  Identities=26%  Similarity=0.339  Sum_probs=35.0

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCcc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC  347 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C  347 (388)
                      ..++|.|++|++.|.++..|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            9 GEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            35789999999999999999999999999999999976

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=7.9e-10  Score=66.73  Aligned_cols=39  Identities=18%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             hhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccc
Q psy4688         334 NWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHI  372 (388)
Q Consensus       334 ~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~  372 (388)
                      ++|.++++|.|++|++.|  ++.|..|+++|++++||.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            357889999999999999  678999999999999999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=8.2e-10  Score=67.75  Aligned_cols=36  Identities=25%  Similarity=0.483  Sum_probs=33.7

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      .++|.|++|++.|.+.+.|..|+++|++++||.|++
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A           10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            578999999999999999999999999999999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.7e-10  Score=69.34  Aligned_cols=33  Identities=27%  Similarity=0.510  Sum_probs=21.5

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A           12 PYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            566666666666666666666666666666665

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.6e-10  Score=69.41  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=22.1

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A           12 PFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            566666666666666666666666666666665

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.5e-10  Score=69.48  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.....|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A           12 PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            466666666666666666666666666666664

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.1e-10  Score=67.78  Aligned_cols=41  Identities=32%  Similarity=0.461  Sum_probs=36.8

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHI  372 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~  372 (388)
                      |+++|.+++||.|++|++.|  +..|..|+++|++++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            67888999999999999998  677999999999999999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.7e-10  Score=69.37  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=21.3

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A           12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            566666666666666666666666666666665

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4e-10  Score=69.19  Aligned_cols=33  Identities=33%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A           12 PYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             SSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             CcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            456666666666666666666666666666654

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.90  E-value=9.7e-10  Score=67.42  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=33.6

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      .++|.|++|++.|.++..|..|+++|++++||.|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A           10 EKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            578999999999999999999999999999999975

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.2e-09  Score=67.07  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=34.2

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      ..++|.|++|++.|.+++.|..|+++|++++||.|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            9 GKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3578999999999999999999999999999999975

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.90  E-value=2e-10  Score=73.35  Aligned_cols=49  Identities=12%  Similarity=0.091  Sum_probs=22.8

Q ss_pred             cCCChhHHHHHHHHhccCCcccccCcccccccCCcCCChhHHHHHHhhcCCCCCc
Q psy4688         226 MLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNH  280 (388)
Q Consensus       226 ~f~~~~~l~~H~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  280 (388)
                      .|.....|..|+++|.+++      +|.|++||+.|.....|..|+++|++++||
T Consensus         5 ~~~~~~~l~~h~~~H~~~k------~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            5 RAKHPPGTEKPRSRSQSEQ------PATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCSCSSCCCCCHHHHTSSC------CEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccCCCcchhhHHHhcCCCC------CccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            3444444444444444322      344555555555555555555555444443

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.2e-09  Score=67.09  Aligned_cols=40  Identities=30%  Similarity=0.453  Sum_probs=36.4

Q ss_pred             HhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccc
Q psy4688         333 KNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHI  372 (388)
Q Consensus       333 ~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~  372 (388)
                      +++|+++++|.|++|++.|  +..|..|+++|++++||.|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            5678899999999999999  678999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.90  E-value=3.2e-10  Score=68.11  Aligned_cols=32  Identities=31%  Similarity=0.588  Sum_probs=18.3

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHIC  282 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  282 (388)
                      +|+|++|++.|.+...|..|+++|++++||.|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A           10 PYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            45555555555555555555555555555555

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.2e-10  Score=69.11  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=21.4

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.....|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A           12 CYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            566666666666666666666666666666665

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.1e-09  Score=67.19  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=34.0

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      ..++|+|++|++.|.+...|..|+++|++++||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            9 GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3578999999999999999999999999999999975

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.4e-10  Score=69.02  Aligned_cols=33  Identities=24%  Similarity=0.514  Sum_probs=20.6

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A           12 PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            466666666666666666666666666666664

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3.2e-10  Score=69.67  Aligned_cols=33  Identities=36%  Similarity=0.503  Sum_probs=20.3

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|+|++|++.|.+...|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A           12 HYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            466666666666666666666666666666654

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.2e-10  Score=69.12  Aligned_cols=33  Identities=27%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A           12 PYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566666666666666666666666666666665

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.2e-09  Score=67.06  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=34.0

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      ..++|.|++|++.|.+.+.|..|+++|++++||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            9 GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            3578999999999999999999999999999999975

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.1e-09  Score=67.09  Aligned_cols=37  Identities=22%  Similarity=0.450  Sum_probs=34.1

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      ..++|.|++|++.|.+.+.|..|+++|++++||.|++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            9 GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3578999999999999999999999999999999975

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.1e-09  Score=67.13  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=33.9

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      ..++|.|++|++.|.+.+.|..|+++|++++||.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            9 GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3578999999999999999999999999999999975

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.3e-10  Score=67.11  Aligned_cols=32  Identities=22%  Similarity=0.408  Sum_probs=18.0

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHIC  282 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  282 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A           10 PYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            45555555555555555555555555555555

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.9e-10  Score=69.22  Aligned_cols=33  Identities=30%  Similarity=0.448  Sum_probs=20.5

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.....|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A           12 PYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            466666666666666666666666666666654

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=4e-10  Score=69.20  Aligned_cols=33  Identities=36%  Similarity=0.491  Sum_probs=18.5

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A           12 HYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            455555555555555555555555555555554

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1e-09  Score=66.93  Aligned_cols=41  Identities=32%  Similarity=0.438  Sum_probs=35.6

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHI  372 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~  372 (388)
                      +.++|.++++|.|++|++.|  +..|..|+++|++++||.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            34568889999999999998  677999999999999999974

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=3.7e-10  Score=77.29  Aligned_cols=60  Identities=23%  Similarity=0.392  Sum_probs=35.7

Q ss_pred             hhHHhHHhhhcCCCcccCCcchhhH-HhHHHHHHHHhcCCCCccccccchhh-Hhhhhhhhcc
Q psy4688         327 KKLNKHKNWAHGDKFHLCKVCGAKI-KGSLKQHMITHTGERKYCCHICGKKL-RGKLKEHMLN  387 (388)
Q Consensus       327 ~~L~~H~~~hh~~~~~~C~~C~~~f-~~~L~~H~~~H~~~~~~~C~~C~k~f-~~~l~~H~~~  387 (388)
                      ..|..|++++.+++|+.|+.|++.| ...|..|+ .|.|++||.|+.||+.| ...|..|+.+
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~~~~L~~H~-~~c~~~~~~C~~C~~~~~~~~l~~H~~~   64 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELSILKLKEHE-DYCGARTELCGNCGRNVLVKDLKTHPEV   64 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEECHHHHHHHH-HHHHHCEEECSSSCCEEETTGGGTHHHH
T ss_pred             hHHHhhCcccCCCcccCCcccChHhhHHHHHHHH-hHcCCCceEcccCCCcCcHHHHHHHHHH
Confidence            3455566666666666666666665 44566666 56666666666666665 3446666543

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.7e-10  Score=67.75  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=20.6

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++||+.|.+...|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A           12 PYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            466666666666666666666666666666653

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.4e-09  Score=66.73  Aligned_cols=36  Identities=25%  Similarity=0.467  Sum_probs=33.2

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      .++|.|++|++.|.++..|..|+++|++++||.|++
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A           10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            578999999999999999999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.6e-09  Score=65.65  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=32.9

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      ..++|+|++|++.|.+.+.|..|+++|++++||.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            9 GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            357899999999999999999999999999999985

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=4.6e-11  Score=84.46  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=39.2

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccccch
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGK  375 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k  375 (388)
                      |.++|.+++||.|++|++.|  +..|..|+++|++++||+|..|..
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~   61 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER   61 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh
Confidence            34568899999999999999  678999999999999999988765

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.8e-09  Score=66.21  Aligned_cols=41  Identities=29%  Similarity=0.406  Sum_probs=35.9

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHI  372 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~  372 (388)
                      |+++|.++++|.|++|++.|  +..|..|+++|++++||.|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            67788899999999999998  567999999999999999964

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.4e-10  Score=67.84  Aligned_cols=32  Identities=31%  Similarity=0.579  Sum_probs=18.9

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHIC  282 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  282 (388)
                      +|.|++|++.|.+...|..|+++|+++++|.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A           12 PYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            45555566666655666666655655555555

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=7.7e-10  Score=67.90  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=19.6

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.....|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A           12 PYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455666666666666666666666666666554

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.7e-09  Score=64.42  Aligned_cols=37  Identities=32%  Similarity=0.527  Sum_probs=32.4

Q ss_pred             hhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         334 NWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       334 ~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      ++|.+++||.|++|++.|  ++.|..|+++|+|++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            357789999999999998  6779999999999999988

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=2.1e-09  Score=65.15  Aligned_cols=41  Identities=24%  Similarity=0.282  Sum_probs=37.0

Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      .|+++|.++++|.|++||+.|  ++.|..|+++|+|++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            578889999999999999998  67799999999999999985

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.7e-09  Score=66.25  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=33.4

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      .++|.|++|++.|.+.+.|..|+++|++++||.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A           10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            578999999999999999999999999999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.84  E-value=2.2e-09  Score=64.36  Aligned_cols=39  Identities=23%  Similarity=0.373  Sum_probs=36.0

Q ss_pred             HHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         332 HKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       332 H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      |+++|.+++||.|++||+.|  ++.|..|+++|+|++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            67788999999999999999  6789999999999999998

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.9e-09  Score=66.71  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=37.4

Q ss_pred             HHhhhcCCCcccCC--cchhhH--HhHHHHHHHHhcCCCCcccccc
Q psy4688         332 HKNWAHGDKFHLCK--VCGAKI--KGSLKQHMITHTGERKYCCHIC  373 (388)
Q Consensus       332 H~~~hh~~~~~~C~--~C~~~f--~~~L~~H~~~H~~~~~~~C~~C  373 (388)
                      |.++|.++++|.|+  +|++.|  +..|..|+++|++++||+|++|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45678899999998  899998  6779999999999999999987

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.2e-09  Score=65.75  Aligned_cols=36  Identities=25%  Similarity=0.427  Sum_probs=33.4

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      ..++|+|++|++.|.+++.|..|+++|++++||.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            9 GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            357899999999999999999999999999999997

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.83  E-value=1e-09  Score=64.67  Aligned_cols=34  Identities=26%  Similarity=0.545  Sum_probs=22.3

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC  344 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C  344 (388)
                      +++|.|++||+.|.+.+.|..|+++|++++||.+
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4566666666666666666666666666666654

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2.5e-09  Score=64.83  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=32.9

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      .++|.|++|++.|.+...|..|+++|++++||.|+
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A           10 KTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            57899999999999999999999999999999995

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2e-09  Score=65.99  Aligned_cols=42  Identities=19%  Similarity=0.188  Sum_probs=37.1

Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcC-CCCccccc
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTG-ERKYCCHI  372 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~-~~~~~C~~  372 (388)
                      .|+++|.+++||.|++|++.|  ++.|..|+++|++ ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477888999999999999998  5679999999999 99999975

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2e-09  Score=65.98  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=33.9

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      .+++|+|++|++.|.+...|..|+++|+++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            9 GERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3578999999999999999999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=7.9e-10  Score=67.83  Aligned_cols=33  Identities=30%  Similarity=0.564  Sum_probs=21.1

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICK  283 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  283 (388)
                      +|.|++|++.|.....|..|+++|++++||.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A           12 PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566666666666666666666666666666664

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=8.7e-10  Score=66.15  Aligned_cols=32  Identities=31%  Similarity=0.639  Sum_probs=20.4

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHIC  282 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  282 (388)
                      +|.|++|++.|.+...|..|+++|++++||.|
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A           11 PYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            56666666666666666666666666666655

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=7.3e-10  Score=66.48  Aligned_cols=32  Identities=38%  Similarity=0.615  Sum_probs=18.9

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHIC  282 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  282 (388)
                      +|.|++||+.|.+...|..|+++|++++||.|
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A           11 PYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             SBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            45566666666666666666666666555554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.9e-09  Score=64.55  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=32.7

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      .+++|+|++|++.|.+...|..|+++|++++||.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            357899999999999999999999999999999985

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.8e-09  Score=63.83  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccC
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC  344 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C  344 (388)
                      .+++|+|++|++.|.+.+.|..|+++|.+++||.|
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            8 GEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             SSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            35789999999999999999999999999999988

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=1.8e-09  Score=70.12  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=22.2

Q ss_pred             CCccccCC--CcccccChhhHHhHH-hhhcCCCcccCC
Q psy4688         311 IEKFKCDL--CDKEFFEKKKLNKHK-NWAHGDKFHLCK  345 (388)
Q Consensus       311 ~~~~~C~~--C~k~F~~~~~L~~H~-~~hh~~~~~~C~  345 (388)
                      ++||+|+.  |+++|.+.+.|..|+ ++|.+++||.|.
T Consensus        25 EKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           25 YRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             CCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            46666754  777776666666665 456666666654

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.8e-09  Score=64.60  Aligned_cols=41  Identities=20%  Similarity=0.202  Sum_probs=36.7

Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      .|+++|.+++||.|++|++.|  ++.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            578889999999999999999  56799999999999999984

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=3.2e-09  Score=65.03  Aligned_cols=36  Identities=19%  Similarity=0.142  Sum_probs=33.2

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      .+++|.|++|++.|.+...|..|+++|++++||.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            9 GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             CCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            357899999999999999999999999999999996

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=1.8e-09  Score=62.69  Aligned_cols=31  Identities=23%  Similarity=0.512  Sum_probs=19.8

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKF  341 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~  341 (388)
                      +++|.|++|++.|.+.+.|..|+++|++++|
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            7 GRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4566666666666666666666666666553

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.73  E-value=6.5e-09  Score=58.56  Aligned_cols=31  Identities=29%  Similarity=0.416  Sum_probs=23.0

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCCCccc
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFHL  343 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~  343 (388)
                      ||.|++||+.|.+.+.|..|+++|.|+++|.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            5777777777777777777777777777664

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.72  E-value=5e-09  Score=59.05  Aligned_cols=31  Identities=16%  Similarity=0.211  Sum_probs=28.1

Q ss_pred             CcccCCcchhhH--HhHHHHHHHHhcCCCCccc
Q psy4688         340 KFHLCKVCGAKI--KGSLKQHMITHTGERKYCC  370 (388)
Q Consensus       340 ~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C  370 (388)
                      +||.|++||+.|  +++|..|+++|+|++||.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999999  6789999999999999863

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=9.9e-09  Score=62.11  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=32.4

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      .+++|.|++|++.|.+.+.|..|+++|++++||.|.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            9 GEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            357899999999999999999999999999999873

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.71  E-value=2.8e-09  Score=61.86  Aligned_cols=27  Identities=26%  Similarity=0.541  Sum_probs=13.7

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      +||+|+.|++.|.+...|..|+++|+|
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            445555555555555555555554443

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.69  E-value=9.7e-09  Score=60.32  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.5

Q ss_pred             hcCCCcccCCcchhhH--HhHHHHHHHHhcCCCCcccc
Q psy4688         336 AHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH  371 (388)
Q Consensus       336 hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~  371 (388)
                      |.+++||.|++||+.|  ++.|..|+++|+|++||.+.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            4678999999999998  67899999999999999864

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.66  E-value=6.8e-09  Score=59.27  Aligned_cols=31  Identities=29%  Similarity=0.533  Sum_probs=21.7

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKF  341 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~  341 (388)
                      .++|.|++|++.|.+.+.|..|+++|++++|
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            5 SSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            4567777777777777777777777766653

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.65  E-value=7.8e-09  Score=59.06  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKF  341 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~  341 (388)
                      .++|.|++|++.|.+.+.|..|+++|++++|
T Consensus         5 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            5 KRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            4567777777777777777777776666553

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.2e-08  Score=59.17  Aligned_cols=29  Identities=28%  Similarity=0.260  Sum_probs=19.0

Q ss_pred             CCccccCC--CcccccChhhHHhHHhhhcCC
Q psy4688         311 IEKFKCDL--CDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       311 ~~~~~C~~--C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      ++||+|+.  |++.|.+++.|.+|+++|+|+
T Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            7 GILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            45667764  777777766666666666654

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.61  E-value=2.7e-08  Score=64.69  Aligned_cols=37  Identities=16%  Similarity=0.106  Sum_probs=32.6

Q ss_pred             hcCCCcccCCc--chhhH--HhHHHHHH-HHhcCCCCccccc
Q psy4688         336 AHGDKFHLCKV--CGAKI--KGSLKQHM-ITHTGERKYCCHI  372 (388)
Q Consensus       336 hh~~~~~~C~~--C~~~f--~~~L~~H~-~~H~~~~~~~C~~  372 (388)
                      ..|+|||.|++  |+++|  +++|.+|+ ++|+|++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            57899999976  99999  67899998 6899999999854

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.60  E-value=1.8e-08  Score=58.32  Aligned_cols=35  Identities=29%  Similarity=0.556  Sum_probs=29.6

Q ss_pred             HHhhcCCCCCccCCccccccCChHHHHHHHhhhcc
Q psy4688         123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQ  157 (388)
Q Consensus       123 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  157 (388)
                      |+++|++++||.|+.|++.|.....|..|+++|.+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            67788888888999999888888888888888764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.59  E-value=1.8e-08  Score=58.76  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=20.0

Q ss_pred             CCccccC--CCcccccChhhHHhHHhhhcCCCcc
Q psy4688         311 IEKFKCD--LCDKEFFEKKKLNKHKNWAHGDKFH  342 (388)
Q Consensus       311 ~~~~~C~--~C~k~F~~~~~L~~H~~~hh~~~~~  342 (388)
                      +++|.|+  .|++.|.+.+.|..|+++|+++++|
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            3556666  3666666666666666666666655

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.53  E-value=5.7e-08  Score=55.26  Aligned_cols=32  Identities=22%  Similarity=0.416  Sum_probs=27.0

Q ss_pred             hcCCCcccCCcchhhH--HhHHHHHHHHhcCCCC
Q psy4688         336 AHGDKFHLCKVCGAKI--KGSLKQHMITHTGERK  367 (388)
Q Consensus       336 hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~  367 (388)
                      |.++++|.|++|++.|  ++.|..|+++|+|++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5678899999999888  5679999999988875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.51  E-value=7.6e-09  Score=57.79  Aligned_cols=30  Identities=30%  Similarity=0.420  Sum_probs=21.1

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCCCcc
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFH  342 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~  342 (388)
                      ||+|++||+.|.+.+.|..|+++|.+++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            567777777777777777777777666665

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=2.4e-08  Score=57.74  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             CCccccCCCcccccCh-hhHHhHHhhhcCC
Q psy4688         311 IEKFKCDLCDKEFFEK-KKLNKHKNWAHGD  339 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~-~~L~~H~~~hh~~  339 (388)
                      .++|+|++|++.|.+. +.|..|+++|+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            7 GRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            4567777777777777 7777777776665

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=7.8e-08  Score=55.50  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=28.9

Q ss_pred             hhhcCCCcccCCcchhhH--HhHHHHHHHHhcCCCC
Q psy4688         334 NWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERK  367 (388)
Q Consensus       334 ~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~  367 (388)
                      ++|.+++||.|++||+.|  +++|..|+++|+|++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            467888999999999988  6779999999998875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=4e-08  Score=56.37  Aligned_cols=29  Identities=28%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      .++|+|++|++.|.....|..|+++|+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            45677777777777777777777766654

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=2.6e-08  Score=57.63  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=15.8

Q ss_pred             CCccccCCCcccccChhhHHhH-HhhhcC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKH-KNWAHG  338 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H-~~~hh~  338 (388)
                      ++||+|+.|++.|.+++.|..| ++.|.+
T Consensus         7 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            7 GHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            3456666666666666666655 554443

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.49  E-value=9.4e-08  Score=54.36  Aligned_cols=32  Identities=22%  Similarity=0.542  Sum_probs=26.4

Q ss_pred             hcCCCcccCCcchhhH--HhHHHHHHHHhcCCCC
Q psy4688         336 AHGDKFHLCKVCGAKI--KGSLKQHMITHTGERK  367 (388)
Q Consensus       336 hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~~  367 (388)
                      |.+++||.|++||+.|  ++.|..|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5678888888888888  5678888888888875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.47  E-value=7.8e-09  Score=57.76  Aligned_cols=30  Identities=17%  Similarity=0.229  Sum_probs=26.1

Q ss_pred             CcccCCcchhhH--HhHHHHHHHHhcCCCCcc
Q psy4688         340 KFHLCKVCGAKI--KGSLKQHMITHTGERKYC  369 (388)
Q Consensus       340 ~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~  369 (388)
                      +||.|++||+.|  +++|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   32 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVALG   32 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCCC
Confidence            589999999999  567999999999999873

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.44  E-value=8.3e-08  Score=54.62  Aligned_cols=29  Identities=24%  Similarity=0.478  Sum_probs=22.7

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV  346 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~  346 (388)
                      ++||+|+.|||.|.+++.|.+|+       ||.|+.
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             ccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            57788888888888888888887       677654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1.5e-07  Score=54.46  Aligned_cols=31  Identities=23%  Similarity=0.364  Sum_probs=26.2

Q ss_pred             hcCCCcccCCc--chhhH--HhHHHHHHHHhcCCC
Q psy4688         336 AHGDKFHLCKV--CGAKI--KGSLKQHMITHTGER  366 (388)
Q Consensus       336 hh~~~~~~C~~--C~~~f--~~~L~~H~~~H~~~~  366 (388)
                      ++|++||.|++  |+++|  ++.|++||++|+|+.
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            57889999986  99998  677999999999863

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.40  E-value=2.8e-08  Score=61.03  Aligned_cols=29  Identities=24%  Similarity=0.397  Sum_probs=16.9

Q ss_pred             CCccccC--CCcccccChhhHHhHHhhhcCC
Q psy4688         311 IEKFKCD--LCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       311 ~~~~~C~--~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +++|.|+  .|++.|.+++.|..|+++|+|+
T Consensus        16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             TTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            3556663  4666666666666666655554

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.38  E-value=2.2e-07  Score=53.93  Aligned_cols=34  Identities=29%  Similarity=0.483  Sum_probs=29.9

Q ss_pred             hcCCCcccCC--cchhhH--HhHHHHHHHHhcCCCCcc
Q psy4688         336 AHGDKFHLCK--VCGAKI--KGSLKQHMITHTGERKYC  369 (388)
Q Consensus       336 hh~~~~~~C~--~C~~~f--~~~L~~H~~~H~~~~~~~  369 (388)
                      |.+++||.|+  .|++.|  ++.|..|+++|++++||.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            4688999999  599999  678999999999999984

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.37  E-value=1.8e-07  Score=50.46  Aligned_cols=29  Identities=31%  Similarity=0.529  Sum_probs=23.8

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      +||.|+.|++.|.+.+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            36888888888888888888888887763

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.37  E-value=2.3e-07  Score=50.01  Aligned_cols=28  Identities=25%  Similarity=0.686  Sum_probs=22.7

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      +|.|++|++.|.+.+.|..|+++|++++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            6888888888888888888888877653

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=2.9e-07  Score=52.61  Aligned_cols=32  Identities=31%  Similarity=0.473  Sum_probs=26.0

Q ss_pred             hhcCCCcccCCcchhhH--HhHHHHHHHHhcCCC
Q psy4688         335 WAHGDKFHLCKVCGAKI--KGSLKQHMITHTGER  366 (388)
Q Consensus       335 ~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~~  366 (388)
                      +|.+++||.|++|++.|  +..|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            46778888999998888  567888988888874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.36  E-value=8.4e-08  Score=59.14  Aligned_cols=29  Identities=21%  Similarity=0.495  Sum_probs=19.0

Q ss_pred             CCccccCCCcccccChhhHHhHHh-hhcCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKN-WAHGD  339 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~-~hh~~  339 (388)
                      +++|.|++|++.|.....|..|++ +|.++
T Consensus         5 ~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            456777777777777777777766 66554

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=3.6e-07  Score=52.19  Aligned_cols=30  Identities=33%  Similarity=0.546  Sum_probs=22.5

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      .++|.|++|++.|.++..|..|+++|++++
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            467778888888888888888877777653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.35  E-value=2.5e-07  Score=50.28  Aligned_cols=29  Identities=17%  Similarity=0.455  Sum_probs=24.4

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCCCc
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKF  341 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~~  341 (388)
                      +|.|++|++.|...+.|..|+++|+++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            68889999999988889888888887653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=2.6e-07  Score=52.88  Aligned_cols=29  Identities=14%  Similarity=0.384  Sum_probs=21.2

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      .++|+|++|++.|...+.|..|+++|.++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            46677777777777777777777777665

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=2.8e-07  Score=52.71  Aligned_cols=29  Identities=31%  Similarity=0.519  Sum_probs=20.7

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      .++|+|++|++.|.+...|..|+++|+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            46677777777777777777777776654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=3e-07  Score=52.58  Aligned_cols=30  Identities=30%  Similarity=0.517  Sum_probs=22.4

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      .++|.|++|++.|.....|..|+++|++++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            467778888888888777877777776653

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.34  E-value=1.7e-07  Score=54.11  Aligned_cols=29  Identities=24%  Similarity=0.671  Sum_probs=20.3

Q ss_pred             CCccccCC--CcccccChhhHHhHHhhhcCC
Q psy4688         311 IEKFKCDL--CDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       311 ~~~~~C~~--C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      .++|.|++  |++.|.+++.|..|+++|.|+
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            46677764  777777777777777776665

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.33  E-value=2.7e-07  Score=50.13  Aligned_cols=29  Identities=24%  Similarity=0.581  Sum_probs=23.1

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      ++|.|+.|++.|.....|..|+++|++++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            56888888888888888888888877653

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=1.4e-07  Score=54.50  Aligned_cols=33  Identities=27%  Similarity=0.404  Sum_probs=22.8

Q ss_pred             hhcCCCCCccCCccccccCChHHHHHH-Hhhhcc
Q psy4688         125 SSHTGLKNYKCHVCDKAYSCRKALKTH-TLLHEQ  157 (388)
Q Consensus       125 ~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~  157 (388)
                      ++|++++||+|+.|++.|.....|..| +++|.+
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            356677777777777777777777777 666643

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.31  E-value=3.3e-07  Score=49.34  Aligned_cols=29  Identities=31%  Similarity=0.541  Sum_probs=23.4

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      +||.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            36888888888888888888888887764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=2.4e-07  Score=53.37  Aligned_cols=32  Identities=28%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             hcCCCCCccCCccccccCCh-HHHHHHHhhhcc
Q psy4688         126 SHTGLKNYKCHVCDKAYSCR-KALKTHTLLHEQ  157 (388)
Q Consensus       126 ~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~  157 (388)
                      +|.+++||.|++|++.|... ..|..|+++|.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            46666777777777777776 777777776654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=5.3e-07  Score=51.48  Aligned_cols=31  Identities=35%  Similarity=0.625  Sum_probs=20.8

Q ss_pred             hCCCCcccCCCCcccCCChhHHHHHHHHhcc
Q psy4688         212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHE  242 (388)
Q Consensus       212 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  242 (388)
                      |.++++|.|++|++.|.....|..|+++|.+
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            5566667777777777777777777666654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.29  E-value=3.5e-07  Score=49.27  Aligned_cols=28  Identities=32%  Similarity=0.660  Sum_probs=22.1

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      +|.|++|++.|.....|..|+++|.+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            6788888888888888888888877653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=3e-07  Score=52.58  Aligned_cols=31  Identities=23%  Similarity=0.573  Sum_probs=18.8

Q ss_pred             cCCCCCccCCccccccCChHHHHHHHhhhcc
Q psy4688         127 HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQ  157 (388)
Q Consensus       127 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  157 (388)
                      |++++||.|++|++.|.....|..|+++|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            4555666666666666666666666665543

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.28  E-value=2.9e-07  Score=52.33  Aligned_cols=25  Identities=24%  Similarity=0.553  Sum_probs=14.7

Q ss_pred             CCCCcccCCCCcccCCChhHHHHHH
Q psy4688         213 TSVRKYGCDECGKMLKSRDSLNTHK  237 (388)
Q Consensus       213 ~~~~~~~C~~C~~~f~~~~~l~~H~  237 (388)
                      .+++||.|++||+.|...+.|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            3455666666666666666666555

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=5e-07  Score=51.63  Aligned_cols=31  Identities=19%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             hCCCCcccCCCCcccCCChhHHHHHHHHhcc
Q psy4688         212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHE  242 (388)
Q Consensus       212 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  242 (388)
                      |.+++||.|++|++.|.....|..|+++|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            5566677777777777777777777666653

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.27  E-value=3.8e-07  Score=48.21  Aligned_cols=27  Identities=33%  Similarity=0.832  Sum_probs=21.5

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      ||+|++|++.|.+.+.|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            478888999998888888888887653

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.27  E-value=4.5e-07  Score=49.82  Aligned_cols=29  Identities=34%  Similarity=0.734  Sum_probs=23.4

Q ss_pred             CccccC--CCcccccChhhHHhHHhhhcCCC
Q psy4688         312 EKFKCD--LCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       312 ~~~~C~--~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      +||.|+  .||+.|.+.+.|..|+++|+|++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            368887  88888888888888888887764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.60  E-value=1e-07  Score=51.54  Aligned_cols=27  Identities=26%  Similarity=0.538  Sum_probs=19.1

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      ||+|++|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            567777777777777777777766654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.26  E-value=3.8e-07  Score=48.74  Aligned_cols=27  Identities=26%  Similarity=0.637  Sum_probs=22.0

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      ++|.|++|++.|.+.+.|..|+++|+|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            578888888888888888888887754

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.24  E-value=7.3e-07  Score=49.33  Aligned_cols=29  Identities=31%  Similarity=0.643  Sum_probs=23.5

Q ss_pred             CccccC--CCcccccChhhHHhHHhhhcCCC
Q psy4688         312 EKFKCD--LCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       312 ~~~~C~--~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      +||.|+  .|++.|.+.+.|..|+++|++++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            578888  78888888888888888887753

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.54  E-value=1.5e-07  Score=51.31  Aligned_cols=28  Identities=21%  Similarity=0.599  Sum_probs=19.8

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +||.|+.|++.|.+...|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4577777777777777777777776654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=9e-07  Score=50.51  Aligned_cols=31  Identities=29%  Similarity=0.615  Sum_probs=20.4

Q ss_pred             hCCCCcccCCCCcccCCChhHHHHHHHHhcc
Q psy4688         212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHE  242 (388)
Q Consensus       212 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  242 (388)
                      |.+++||.|++|++.|.....|..|+++|.+
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            4556667777777777766667666666653

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.21  E-value=9.3e-07  Score=50.85  Aligned_cols=31  Identities=39%  Similarity=0.767  Sum_probs=25.9

Q ss_pred             hcCCCcccCCc--chhhH--HhHHHHHHHHhcCCC
Q psy4688         336 AHGDKFHLCKV--CGAKI--KGSLKQHMITHTGER  366 (388)
Q Consensus       336 hh~~~~~~C~~--C~~~f--~~~L~~H~~~H~~~~  366 (388)
                      |.+++||.|++  ||+.|  ++.|..|+++|+|++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            56888999985  99988  677999999998875

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.20  E-value=4.6e-07  Score=48.00  Aligned_cols=25  Identities=16%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             CccccCCCcccccChhhHHhHHhhh
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~h  336 (388)
                      +||+|++||+.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            5788888888888888888888765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.20  E-value=6.5e-07  Score=47.33  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=20.6

Q ss_pred             CccccCCCcccccChhhHHhHHhhh
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~h  336 (388)
                      +||.|+.||+.|.+.+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            5788888888888888888888775

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.18  E-value=6.8e-07  Score=54.93  Aligned_cols=34  Identities=32%  Similarity=0.552  Sum_probs=25.9

Q ss_pred             hcCCCCCccCCccccccCChHHHHHHHh-hhcccc
Q psy4688         126 SHTGLKNYKCHVCDKAYSCRKALKTHTL-LHEQEK  159 (388)
Q Consensus       126 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~  159 (388)
                      +|++++||.|.+|++.|.....|..|++ +|.++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            4678888888888888888888888888 776653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.15  E-value=1.3e-06  Score=46.84  Aligned_cols=27  Identities=22%  Similarity=0.564  Sum_probs=15.4

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      +|.|++||+.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            455555555555555555555555543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.15  E-value=1.4e-06  Score=45.94  Aligned_cols=25  Identities=32%  Similarity=0.666  Sum_probs=16.6

Q ss_pred             ccccccCCcCCChhHHHHHHhhcCC
Q psy4688         252 YECDYCGAKYPNKYTLSDHISGHTG  276 (388)
Q Consensus       252 ~~C~~C~~~f~~~~~L~~H~~~H~~  276 (388)
                      |.|++||+.|.+...|..|+++|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            5666666666666666666666654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.14  E-value=9.4e-07  Score=47.94  Aligned_cols=28  Identities=25%  Similarity=0.699  Sum_probs=22.3

Q ss_pred             ccccCCCcccccChhhHHhH-HhhhcCCC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKH-KNWAHGDK  340 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H-~~~hh~~~  340 (388)
                      ||.|+.|++.|.+.+.|..| +++|.+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            68888888888888888888 57776653

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.43  E-value=2.9e-07  Score=50.07  Aligned_cols=28  Identities=36%  Similarity=0.666  Sum_probs=22.6

Q ss_pred             CCcccCCcchhhH--HhHHHHHHHHhcCCC
Q psy4688         339 DKFHLCKVCGAKI--KGSLKQHMITHTGER  366 (388)
Q Consensus       339 ~~~~~C~~C~~~f--~~~L~~H~~~H~~~~  366 (388)
                      ++||.|++||+.|  .++|..|+++|+|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            3688999999988  466889999888764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.12  E-value=1.3e-06  Score=46.90  Aligned_cols=27  Identities=30%  Similarity=0.548  Sum_probs=14.8

Q ss_pred             ccccccchhccCCchHHHHHHhhcCCC
Q psy4688         104 HFECNYCHAKFSNKSLLSDHISSHTGL  130 (388)
Q Consensus       104 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  130 (388)
                      ||.|+.|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            455555555555555555555555443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.10  E-value=1.6e-06  Score=46.91  Aligned_cols=27  Identities=30%  Similarity=0.772  Sum_probs=16.4

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      +|.|++||+.|.....|..|+++|+++
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhccC
Confidence            456666666666666666666666553

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.10  E-value=1.9e-06  Score=46.60  Aligned_cols=27  Identities=26%  Similarity=0.639  Sum_probs=14.7

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      +|.|++||+.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            355555555555555555555555543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.09  E-value=2.4e-06  Score=46.73  Aligned_cols=27  Identities=33%  Similarity=0.789  Sum_probs=19.0

Q ss_pred             ccccc--ccCCcCCChhHHHHHHhhcCCC
Q psy4688         251 EYECD--YCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       251 ~~~C~--~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      +|.|+  .||+.|.....|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            56676  6777777777777777777664

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.09  E-value=1.7e-06  Score=45.63  Aligned_cols=23  Identities=13%  Similarity=0.475  Sum_probs=11.1

Q ss_pred             cccCCCCcccCCChhHHHHHHHH
Q psy4688         217 KYGCDECGKMLKSRDSLNTHKKI  239 (388)
Q Consensus       217 ~~~C~~C~~~f~~~~~l~~H~~~  239 (388)
                      ||.|++||+.|...+.|..|+++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHHH
Confidence            44444444444444444444444

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.09  E-value=4.3e-06  Score=54.84  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             hCCCCcccCCCCcccCCChhHHHHHHHHhccC
Q psy4688         212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEG  243 (388)
Q Consensus       212 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  243 (388)
                      +.+++||.|.+|++.|.....|..|+++|+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            44556666666666666666666666666543

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.36  E-value=4.3e-07  Score=47.56  Aligned_cols=24  Identities=25%  Similarity=0.661  Sum_probs=16.9

Q ss_pred             ccccCCCcccccChhhHHhHHhhh
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~h  336 (388)
                      ||.|++||+.|.+.+.|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            567777777777777777777654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.05  E-value=2e-06  Score=45.74  Aligned_cols=25  Identities=32%  Similarity=0.741  Sum_probs=14.3

Q ss_pred             cccccccCCcCCChhHHHHHHhhcC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHT  275 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~  275 (388)
                      +|.|++|++.|.+...|..|+++|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CccCCCCCcccCCHHHHHHHHHhcC
Confidence            4555555555555555555555554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.03  E-value=3.1e-06  Score=55.51  Aligned_cols=37  Identities=19%  Similarity=0.301  Sum_probs=28.2

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCcccCCcch
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCG  348 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~  348 (388)
                      ++||+|++|++.|.+++.|..|+++|+++. ..+.+++
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            578888888888888888888888887764 3455544

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.03  E-value=1.4e-06  Score=46.03  Aligned_cols=24  Identities=33%  Similarity=0.820  Sum_probs=13.0

Q ss_pred             cccccccCCcCCChhHHHHHHhhc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGH  274 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H  274 (388)
                      +|.|++||+.|...+.|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHhc
Confidence            455555555555555555555544

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.29  E-value=6.6e-07  Score=48.21  Aligned_cols=27  Identities=30%  Similarity=0.663  Sum_probs=15.8

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      +|.|++||+.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            455666666666666666666555543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.03  E-value=4.6e-07  Score=55.43  Aligned_cols=37  Identities=22%  Similarity=0.469  Sum_probs=25.9

Q ss_pred             HHHhhcCCCCCccCC--ccccccCChHHHHHHHhhhccc
Q psy4688         122 DHISSHTGLKNYKCH--VCDKAYSCRKALKTHTLLHEQE  158 (388)
Q Consensus       122 ~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  158 (388)
                      .|...|++++||.|+  .|++.|.....|..|+++|.++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            344557777777774  5777777777777777777653

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.01  E-value=4.1e-06  Score=46.13  Aligned_cols=27  Identities=26%  Similarity=0.520  Sum_probs=16.7

Q ss_pred             ccccc--ccCCcCCChhHHHHHHhhcCCC
Q psy4688         251 EYECD--YCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       251 ~~~C~--~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      +|.|+  .||+.|.....|..|+++|+++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            46666  5666666666666666666554

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.00  E-value=4.3e-06  Score=44.69  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=11.7

Q ss_pred             cccCCCCcccCCChhHHHHHHHHhc
Q psy4688         217 KYGCDECGKMLKSRDSLNTHKKIQH  241 (388)
Q Consensus       217 ~~~C~~C~~~f~~~~~l~~H~~~~~  241 (388)
                      ||.|++|++.|.....|..|+++|+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhc
Confidence            3444444444444444444444443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.00  E-value=2.2e-06  Score=45.88  Aligned_cols=26  Identities=27%  Similarity=0.687  Sum_probs=12.9

Q ss_pred             ccccccchhccCCchHHHHHHhhcCC
Q psy4688         104 HFECNYCHAKFSNKSLLSDHISSHTG  129 (388)
Q Consensus       104 ~~~C~~C~~~f~~~~~L~~H~~~h~~  129 (388)
                      +|.|+.|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            34455555555555555555554443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.97  E-value=4.6e-06  Score=45.06  Aligned_cols=27  Identities=26%  Similarity=0.584  Sum_probs=18.3

Q ss_pred             cccccccCCcCCChhHHHHH-HhhcCCC
Q psy4688         251 EYECDYCGAKYPNKYTLSDH-ISGHTGI  277 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H-~~~H~~~  277 (388)
                      +|.|+.||+.|.+...|..| +++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            46677777777777777777 5666654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.91  E-value=5e-06  Score=44.47  Aligned_cols=26  Identities=35%  Similarity=0.827  Sum_probs=21.5

Q ss_pred             ccccC--CCcccccChhhHHhHHhhhcC
Q psy4688         313 KFKCD--LCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       313 ~~~C~--~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      +|.|+  .|++.|.+.+.|..|+++|+|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            67888  888888888888888887754

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.11  E-value=1.7e-06  Score=45.21  Aligned_cols=24  Identities=33%  Similarity=0.862  Sum_probs=12.5

Q ss_pred             cccccccCCcCCChhHHHHHHhhc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGH  274 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H  274 (388)
                      +|.|++||+.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            345555555555555555555444

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.67  E-value=1.7e-05  Score=42.31  Aligned_cols=25  Identities=32%  Similarity=0.695  Sum_probs=14.3

Q ss_pred             ccccc--ccCCcCCChhHHHHHHhhcC
Q psy4688         251 EYECD--YCGAKYPNKYTLSDHISGHT  275 (388)
Q Consensus       251 ~~~C~--~C~~~f~~~~~L~~H~~~H~  275 (388)
                      +|.|+  .||+.|...+.|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            35555  55555555555555555554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.67  E-value=5.7e-05  Score=49.17  Aligned_cols=48  Identities=21%  Similarity=0.434  Sum_probs=26.8

Q ss_pred             ccccccCCchHHHHhHHhhhCCCC------cccCC--CCcccCCChhHHHHHHHHh
Q psy4688         193 KCNRDYRNPRNMRKHLRRVHTSVR------KYGCD--ECGKMLKSRDSLNTHKKIQ  240 (388)
Q Consensus       193 ~C~~~f~~~~~l~~H~~~~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~~  240 (388)
                      .|++.|.+...|..|+...|.+.+      +|.|.  .|++.+.....|..|+++.
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            366666666666666655555443      45554  5555555555555555543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0002  Score=46.58  Aligned_cols=52  Identities=19%  Similarity=0.431  Sum_probs=33.7

Q ss_pred             chhcccChhhHHHHHHhhccCCCcC-CCCccccc--cchhccCCchHHHHHHhhc
Q psy4688          76 CKKTFRNKATFQKHMQRAHVGLKIS-VSKHFECN--YCHAKFSNKSLLSDHISSH  127 (388)
Q Consensus        76 C~~~f~~~~~l~~H~~~~h~~~~~~-~~~~~~C~--~C~~~f~~~~~L~~H~~~h  127 (388)
                      |++.|.+...|..|+...|++.... ...+|.|.  .|++.+.....|..|++..
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            6777777777777776666554322 12367775  6777777777777777653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.27  E-value=0.00066  Score=54.05  Aligned_cols=55  Identities=18%  Similarity=0.261  Sum_probs=27.0

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH-HhHHHHHHHHhcCCCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI-KGSLKQHMITHTGERK  367 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f-~~~L~~H~~~H~~~~~  367 (388)
                      ++..|+.|+..+ .+..|..|+...-+.++-.|+.|+..+ ...|..|..+++|+.+
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLALE  164 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEGGGHHHHHTTCCC---
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCHHHHHhHHHhCcChhh
Confidence            344555555555 444455555544445555555555554 3445555555555544

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.25  E-value=0.0014  Score=52.17  Aligned_cols=71  Identities=18%  Similarity=0.354  Sum_probs=43.7

Q ss_pred             ccc--CCCcccccChhhHHhHHhhhcCCCcccCCcchhhH-HhHHHHHHHHhcCCCCccccccchhh-Hhhhhhhhc
Q psy4688         314 FKC--DLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI-KGSLKQHMITHTGERKYCCHICGKKL-RGKLKEHML  386 (388)
Q Consensus       314 ~~C--~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f-~~~L~~H~~~H~~~~~~~C~~C~k~f-~~~l~~H~~  386 (388)
                      ..|  ..|+..+. ...|..|+. .-.-++..|+.|+..+ +..|..|+...-+.++-.|+.|+..| ...|..|..
T Consensus        83 v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~~l~~H~~  157 (170)
T 3hcs_A           83 VKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQ  157 (170)
T ss_dssp             EECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEEGGGHHHHHT
T ss_pred             cCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHHHHHHHHHHhhhhCCCCCeECCCCCCccCHHHHHhHHH
Confidence            445  35665543 445666653 2334556677777665 56677777666666777777777777 455666654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.39  E-value=0.0032  Score=47.15  Aligned_cols=79  Identities=20%  Similarity=0.311  Sum_probs=50.6

Q ss_pred             CCccccccchhcccChhhHHHHHH-hhccCCCcCCCCccccccc------hhccCCchHHHHHHhhcCCCCCccCCcccc
Q psy4688          68 NSTTTCTMCKKTFRNKATFQKHMQ-RAHVGLKISVSKHFECNYC------HAKFSNKSLLSDHISSHTGLKNYKCHVCDK  140 (388)
Q Consensus        68 ~~~~~C~~C~~~f~~~~~l~~H~~-~~h~~~~~~~~~~~~C~~C------~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~  140 (388)
                      ..++.|.+|+..|.+...+..|.. +.|...    .+.+.+...      ++.+...    .+...+.+...|.|.+|+.
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~----v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~C~~C~~  101 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANK----VRRYMAINQGEDSVPAKKFKAA----PAEISDGEDRSKCCPVCNM  101 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHH----HHHHHHHTTCCCCCSCCCCSCC----SSCCSSCCCTTTEETTTTE
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHH----HHHHhcccCcccCCCCCccCCC----ccccccCCCCCeEcCCCCC
Confidence            357899999999999999999983 122110    011111100      1122211    1223455677899999999


Q ss_pred             ccCChHHHHHHHhh
Q psy4688         141 AYSCRKALKTHTLL  154 (388)
Q Consensus       141 ~f~~~~~l~~H~~~  154 (388)
                      .|.+...|..|...
T Consensus       102 ~f~s~~~~~~H~~g  115 (127)
T 1zu1_A          102 TFSSPVVAESHYIG  115 (127)
T ss_dssp             ECSSHHHHHHHHTS
T ss_pred             EeCCHHHHHHHHCC
Confidence            99999999999853

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.17  E-value=0.0091  Score=44.66  Aligned_cols=75  Identities=16%  Similarity=0.297  Sum_probs=48.1

Q ss_pred             CcCCCCCcCCcCCCcHHHHHHH--HhhccCC-Cccccccc------hhcccChhhHHHHHHhhccCCCcCCCCccccccc
Q psy4688          40 KTKTCPICNKSYPGARNMRKHL--RLVHDKN-STTTCTMC------KKTFRNKATFQKHMQRAHVGLKISVSKHFECNYC  110 (388)
Q Consensus        40 ~~~~C~~C~~~f~~~~~l~~H~--~~~h~~~-~~~~C~~C------~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~C~~C  110 (388)
                      +++.|.+|+..|.+...+..|.  +. |... ..+.+...      ++.+....         +. ........|.|.+|
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkk-H~~~v~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~C~~C   99 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRK-HANKVRRYMAINQGEDSVPAKKFKAAP---------AE-ISDGEDRSKCCPVC   99 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHH-HHHHHHHHHHHTTCCCCCSCCCCSCCS---------SC-CSSCCCTTTEETTT
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHH-HHHHHHHHhcccCcccCCCCCccCCCc---------cc-cccCCCCCeEcCCC
Confidence            5688999999999999999998  33 3221 22322110      11221110         00 11123467899999


Q ss_pred             hhccCCchHHHHHHh
Q psy4688         111 HAKFSNKSLLSDHIS  125 (388)
Q Consensus       111 ~~~f~~~~~L~~H~~  125 (388)
                      ++.|.+...|..|..
T Consensus       100 ~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A          100 NMTFSSPVVAESHYI  114 (127)
T ss_dssp             TEECSSHHHHHHHHT
T ss_pred             CCEeCCHHHHHHHHC
Confidence            999999999999985

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.89  E-value=0.0019  Score=47.51  Aligned_cols=32  Identities=22%  Similarity=0.327  Sum_probs=26.5

Q ss_pred             hhcCCCCCccCCccccccCChHHHHHHHhhhc
Q psy4688         125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHE  156 (388)
Q Consensus       125 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  156 (388)
                      ..|+|+++|.|..|++.|.+...|..|+++..
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            45778889999999999999999999987654

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.73  E-value=0.008  Score=35.06  Aligned_cols=27  Identities=19%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      .+|.|+-|+..|.....|+.||+.--+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp   37 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCP   37 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCc
Confidence            568899999999999999999985433

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.69  E-value=0.012  Score=34.31  Aligned_cols=24  Identities=29%  Similarity=0.663  Sum_probs=18.9

Q ss_pred             CcCCCCCcCCcCCCcHHHHHHHHh
Q psy4688          40 KTKTCPICNKSYPGARNMRKHLRL   63 (388)
Q Consensus        40 ~~~~C~~C~~~f~~~~~l~~H~~~   63 (388)
                      .+|.|+.|+..|.....|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            567888888888888888888764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.68  E-value=0.0021  Score=47.18  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=25.3

Q ss_pred             hhhCCCCcccCCCCcccCCChhHHHHHHHHh
Q psy4688         210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQ  240 (388)
Q Consensus       210 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  240 (388)
                      ..|+|+++|.|..|++.|.+...|..|+++.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            3467888899999999999999998887653

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.36  E-value=0.028  Score=30.67  Aligned_cols=28  Identities=32%  Similarity=0.453  Sum_probs=23.0

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +.|.||+|-+.|.+...|..|....|.+
T Consensus         4 EGFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            4 EGFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             cccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            4588999999999999999998876653

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.12  E-value=0.028  Score=30.68  Aligned_cols=27  Identities=26%  Similarity=0.625  Sum_probs=22.6

Q ss_pred             CcccccccccCCchHHHHhHHhhhCCC
Q psy4688         189 TVCPKCNRDYRNPRNMRKHLRRVHTSV  215 (388)
Q Consensus       189 ~~C~~C~~~f~~~~~l~~H~~~~h~~~  215 (388)
                      |.||+|.+.|.+...|..|....|...
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            679999999999999999988887653

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=91.85  E-value=0.039  Score=36.44  Aligned_cols=45  Identities=24%  Similarity=0.519  Sum_probs=27.1

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCCCcccCCcchhhH-HhHHHHH
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI-KGSLKQH  358 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f-~~~L~~H  358 (388)
                      .|.|+.||..+ .+..|..|...-.+...|.|--|++.| ...++.|
T Consensus        10 ~F~C~~Cgd~l-KK~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~y~~H   55 (79)
T 1wjv_A           10 FFTCNACGESV-KKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSH   55 (79)
T ss_dssp             EEEESSSCCEE-ETTHHHHHHHHCTTCCEEEETTTTEEEEGGGTTTC
T ss_pred             EEEcCCCCCee-ecccchhHHhhCCCCCcEEecccCCeeCCCCEeCE
Confidence            47777777655 345677776554454556677777666 3334444

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=91.22  E-value=0.093  Score=34.65  Aligned_cols=46  Identities=24%  Similarity=0.476  Sum_probs=33.4

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCccccccccccccccccchh
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIH  298 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H  298 (388)
                      .|.|+.||.++. +..|..|...-.+...|.|-.|++.|.. ...+.|
T Consensus        10 ~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           10 FFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             EEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            478888887765 4577888776666667888888888874 445555

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=90.62  E-value=0.0097  Score=39.99  Aligned_cols=49  Identities=16%  Similarity=0.443  Sum_probs=37.5

Q ss_pred             CCCcccc-CCCcccccChhhHHhHHhhhcCCCcccCCcchhhH-HhHHHHHH
Q psy4688         310 PIEKFKC-DLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI-KGSLKQHM  359 (388)
Q Consensus       310 ~~~~~~C-~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~~~f-~~~L~~H~  359 (388)
                      +..+..| ..|+..+. +..|..|+...-..++-.|..|+..+ ...|..|.
T Consensus        13 ~~~~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~~~l~~H~   63 (76)
T 2yuc_A           13 SFNVIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHE   63 (76)
T ss_dssp             CCSCCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCHHHHHHTT
T ss_pred             CCcccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccCHHHHHHHH
Confidence            3467789 58998875 57888998766667788899999887 55677775

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=89.82  E-value=0.2  Score=26.26  Aligned_cols=25  Identities=40%  Similarity=0.868  Sum_probs=20.2

Q ss_pred             CCCCcCCcCCCcHHHHHHHHhhccC
Q psy4688          43 TCPICNKSYPGARNMRKHLRLVHDK   67 (388)
Q Consensus        43 ~C~~C~~~f~~~~~l~~H~~~~h~~   67 (388)
                      -|..|.+.|++..+|..|++..|+.
T Consensus        11 hcrfckkkysdvknlikhire~hd~   35 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAHDP   35 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5888888888888888888876653

>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...

Probab=89.05  E-value=0.33  Score=29.66  Aligned_cols=43  Identities=19%  Similarity=0.497  Sum_probs=20.7

Q ss_pred             CccccccccccccccccchhhccccccccCCCCCccccCCCccc
Q psy4688         279 NHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKE  322 (388)
Q Consensus       279 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~  322 (388)
                      .|+|.+||..|.-...-....+..-..+...+ ..|.|++|+..
T Consensus         3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP-~dw~CP~Cg~~   45 (54)
T 4rxn_A            3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIP-DDWVCPLCGVG   45 (54)
T ss_dssp             CEEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCB
T ss_pred             ceECCCCCeEECCCcCCcccCcCCCCChhHCC-CCCcCcCCCCc
Confidence            47777777777543322222111111111221 34778888753

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=87.93  E-value=0.34  Score=25.39  Aligned_cols=25  Identities=36%  Similarity=0.624  Sum_probs=21.7

Q ss_pred             cccCCCcccccChhhHHhHHhhhcC
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      --|..|.+.|+.-.+|..|++..|.
T Consensus        10 qhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3599999999999999999997664

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=86.93  E-value=0.14  Score=34.69  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=18.0

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      ....|-+||+.|..   |.+|+.++||-.
T Consensus        20 d~iiClecGK~fK~---LkRHL~~~hglt   45 (87)
T 2jsp_A           20 DHIVCLECGGSFKS---LKRHLTTHHSMT   45 (87)
T ss_dssp             SCEECTBTCCEESB---HHHHHHHTTCSC
T ss_pred             CceEecccchhhHH---HHHHHHHccCCC
Confidence            34678888887763   667777776654

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=86.88  E-value=0.35  Score=32.75  Aligned_cols=27  Identities=37%  Similarity=0.644  Sum_probs=20.6

Q ss_pred             cccCCcchhhHHhHHHHHHHHhcCCCCc
Q psy4688         341 FHLCKVCGAKIKGSLKQHMITHTGERKY  368 (388)
Q Consensus       341 ~~~C~~C~~~f~~~L~~H~~~H~~~~~~  368 (388)
                      ...|-+||+.|+ .|++|+.+|+|..|.
T Consensus        21 ~iiClecGK~fK-~LkRHL~~~hgltpe   47 (87)
T 2jsp_A           21 HIVCLECGGSFK-SLKRHLTTHHSMTPE   47 (87)
T ss_dssp             CEECTBTCCEES-BHHHHHHHTTCSCHH
T ss_pred             ceEecccchhhH-HHHHHHHHccCCCHH
Confidence            357888888887 588888887777663

>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A

Probab=86.40  E-value=0.62  Score=28.26  Aligned_cols=12  Identities=25%  Similarity=0.813  Sum_probs=7.8

Q ss_pred             Cccccccccccc
Q psy4688         279 NHICKICNKGYA  290 (388)
Q Consensus       279 ~~~C~~C~k~f~  290 (388)
                      .|+|.+||..|.
T Consensus         3 ~y~C~~CGyvYd   14 (52)
T 1e8j_A            3 IYVCTVCGYEYD   14 (52)
T ss_dssp             CEECSSSCCCCC
T ss_pred             cEEeCCCCeEEc
Confidence            466777776664

>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...

Probab=86.23  E-value=0.5  Score=28.70  Aligned_cols=42  Identities=24%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             CccccccccccccccccchhhccccccccCCCCCccccCCCcc
Q psy4688         279 NHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDK  321 (388)
Q Consensus       279 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k  321 (388)
                      .|+|.+||..|.-..--....+..-..+... ...|.|++|+.
T Consensus         2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~l-P~dw~CP~Cg~   43 (52)
T 1yk4_A            2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDL-PDDWVCPLCGA   43 (52)
T ss_dssp             EEEESSSSCEEETTTCBGGGTBCTTCCGGGS-CTTCBCTTTCC
T ss_pred             cEEeCCCCeEECCCcCCcccCcCCCCCHhHC-CCCCcCCCCCC
Confidence            3677778777654332222211111111111 23477888875

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=85.75  E-value=0.88  Score=24.85  Aligned_cols=25  Identities=32%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             CCccccCCCcccccChhhHHhHHhh
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNW  335 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~  335 (388)
                      ..++.|..|+-+|.+-..+..|++.
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhee
Confidence            4568899999999999999999864

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=85.72  E-value=0.28  Score=32.59  Aligned_cols=60  Identities=17%  Similarity=0.320  Sum_probs=37.1

Q ss_pred             CCCccc-cccccccccccccchhhccccccccCCCCCccccCCCcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         277 IPNHIC-KICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       277 ~~~~~C-~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      ..+-.| ..|+..+. +..|..|..      ..-+.++..|+.|+..|.. ..|..|.. .-+..+-.|+
T Consensus        14 ~~~v~C~~~C~~~v~-r~~l~~H~~------~~C~~r~v~C~~C~~~~~~-~~l~~H~~-~Cp~~~v~C~   74 (76)
T 2yuc_A           14 FNVIPCPNRCPMKLS-RRDLPAHLQ------HDCPKRRLKCEFCGCDFSG-EAYESHEG-MCPQESSGPS   74 (76)
T ss_dssp             CSCCBCTTCCSCBCC-SSSSTTTTT------TSCTTSCCCCSSSCCCCCH-HHHHHTTT-SCTTSSCCCS
T ss_pred             CcccCCCccccHHhh-HhHHHhhCH------hhCCCcceECCCCCCccCH-HHHHHHHh-HCCCCccCCC
Confidence            345678 57987775 455666632      1234577889999999864 56788873 2333333443

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=85.28  E-value=0.63  Score=27.35  Aligned_cols=12  Identities=25%  Similarity=0.933  Sum_probs=7.5

Q ss_pred             Cccccccccccc
Q psy4688         279 NHICKICNKGYA  290 (388)
Q Consensus       279 ~~~C~~C~k~f~  290 (388)
                      .|+|.+||..|.
T Consensus         4 ~y~C~vCGyvyd   15 (46)
T 6rxn_A            4 KYVCNVCGYEYD   15 (46)
T ss_dssp             CEEETTTCCEEC
T ss_pred             EEECCCCCeEEe
Confidence            466666666654

>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}

Probab=84.62  E-value=0.61  Score=31.17  Aligned_cols=14  Identities=21%  Similarity=0.327  Sum_probs=8.7

Q ss_pred             CCcccccccccccc
Q psy4688         278 PNHICKICNKGYAC  291 (388)
Q Consensus       278 ~~~~C~~C~k~f~~  291 (388)
                      ..|+|.+||..|.-
T Consensus        26 ~~y~C~vCGyvYD~   39 (81)
T 2kn9_A           26 KLFRCIQCGFEYDE   39 (81)
T ss_dssp             CEEEETTTCCEEET
T ss_pred             ceEEeCCCCEEEcC
Confidence            34677777766653

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=84.20  E-value=1.8  Score=26.00  Aligned_cols=46  Identities=20%  Similarity=0.486  Sum_probs=28.4

Q ss_pred             CCCCCcCCcCCCcHHHHHHHHhhccCCCccccccchh-cccChhhHHHHHH
Q psy4688          42 KTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKK-TFRNKATFQKHMQ   91 (388)
Q Consensus        42 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~-~f~~~~~l~~H~~   91 (388)
                      -.|++|.-...+...|..|...--    .-.|++|-. .-.+.+.|+.|.+
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sCp----~gqCPYC~~~~e~tesAlQaHfk   50 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSCI----NGQCPYCMTITEATESALQAHYS   50 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHHT----TTBCTTTCCBCCSSHHHHHHHHT
T ss_pred             chhhHHHhhhhhHHHHHHHhccCC----CCCCCcccCcCCcCHHHHHHHHH
Confidence            357777777777777777765422    225666633 3456666777753

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=83.72  E-value=1.5  Score=30.54  Aligned_cols=51  Identities=25%  Similarity=0.559  Sum_probs=34.0

Q ss_pred             hCCcCCCCCcCCcCCCcHHHHHHHHhhccCCCccccc---cchhcccChhhHHHHHHhhccC
Q psy4688          38 KNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCT---MCKKTFRNKATFQKHMQRAHVG   96 (388)
Q Consensus        38 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~---~C~~~f~~~~~l~~H~~~~h~~   96 (388)
                      +++.-.|+.|...+.+...        +..+..|.|+   -|.++|-+..+|+.|+...|..
T Consensus        34 ~~~~k~Cp~C~~~V~rVe~--------~~~~~if~C~~~~~CkrtyLs~rdlqaHI~~~H~~   87 (101)
T 3vk6_A           34 KKGDKMCPGCSDPVQRIEQ--------CTRGSLFMCSIVQGCKRTYLSQRDLQAHINHRHMR   87 (101)
T ss_dssp             HTTCCBCTTTCCBCSEEEE--------EEGGGCCCCCCCCCCCCCCSSHHHHHHHHHHHTTT
T ss_pred             hccCCCCcCcCCeeeeeEE--------eccCCEEECCCCCCHHHHhcCHHHHHHHHHHHhhh
Confidence            4556678888777765442        2224567777   3888888888888887766654

>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}

Probab=83.05  E-value=0.75  Score=28.28  Aligned_cols=13  Identities=23%  Similarity=0.503  Sum_probs=8.6

Q ss_pred             Ccccccccccccc
Q psy4688         279 NHICKICNKGYAC  291 (388)
Q Consensus       279 ~~~C~~C~k~f~~  291 (388)
                      .|+|.+||..|.-
T Consensus         3 ~y~C~~CGyvYd~   15 (55)
T 2v3b_B            3 KWQCVVCGFIYDE   15 (55)
T ss_dssp             EEEETTTCCEEET
T ss_pred             cEEeCCCCeEECC
Confidence            4677777776654

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=82.46  E-value=0.82  Score=25.77  Aligned_cols=25  Identities=12%  Similarity=0.356  Sum_probs=18.8

Q ss_pred             CCccccCCCcccccChhhHHhHHhhh
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~h  336 (388)
                      ...+.|+.|++.+.. ..+..|.-.|
T Consensus         7 ~~~~~C~~C~~~i~~-~~~~EH~D~H   31 (39)
T 2i5o_A            7 EDQVPCEKCGSLVPV-WDMPEHMDYH   31 (39)
T ss_dssp             CCEEECTTTCCEEEG-GGHHHHHHHH
T ss_pred             CCCcccccccCcCCc-ccccchhhHH
Confidence            346889999988887 5567787665

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=81.74  E-value=0.96  Score=27.22  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=19.3

Q ss_pred             cccCCCcccccChhhHHhHHhh
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNW  335 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~  335 (388)
                      -.|.+|+..|..+..|+.|+-+
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs   35 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFS   35 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTS
T ss_pred             ccccccCcccccccchhhhhcc
Confidence            5899999999999999999753

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=80.81  E-value=1.9  Score=23.51  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=9.0

Q ss_pred             cccccchhccCCchHHHHHH
Q psy4688         105 FECNYCHAKFSNKSLLSDHI  124 (388)
Q Consensus       105 ~~C~~C~~~f~~~~~L~~H~  124 (388)
                      +.|..|+.+|++...+..|.
T Consensus         9 ~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            9 KYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHH
T ss_pred             CeeccccceehhhHHHhhhh
Confidence            34444444444444444443

>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A

Probab=80.24  E-value=1.1  Score=29.03  Aligned_cols=12  Identities=25%  Similarity=0.581  Sum_probs=7.1

Q ss_pred             Cccccccccccc
Q psy4688         279 NHICKICNKGYA  290 (388)
Q Consensus       279 ~~~C~~C~k~f~  290 (388)
                      .|+|.+||..|.
T Consensus         7 ~y~C~vCGyiYd   18 (70)
T 1dx8_A            7 KYECEACGYIYE   18 (70)
T ss_dssp             CEEETTTCCEEC
T ss_pred             eEEeCCCCEEEc
Confidence            466666665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	388
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	3e-05
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.001
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.001
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.004

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (90), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 100 SVSKHFECNYCHAKFSNKSLLSDHI-SSHTGLKNYKCHV 137
           SV K + C  C   FS    L+ HI   HT  + +KC V
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (79), Expect = 0.001
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 127 HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQE 158
           H+G K Y C  C KA+S    L  H  +H  E
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHE 242
           R HT  + Y C  C K  + +  L+ H K  H+
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 127 HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
           HTG K Y C  CDK +  ++ L  H   +    
Sbjct: 3   HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 127 HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKV 160
           H+G K Y+C++C   ++    +K H L    E V
Sbjct: 3   HSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.004
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
           K + C  C   F++KS    H+S H GL+ Y C VC K +  +  L  H  +H
Sbjct: 2   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	388
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.69
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.61
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.28
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.23
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.22
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.13
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.11
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.1
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.08
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.07
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.07
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.06
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.05
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.05
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.04
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.03
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.02
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.98
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.96
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.96
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.94
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.93
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.92
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.83
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.82
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.81
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.8
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.77
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.75
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.72
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.68
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.68
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.62
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.58
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.5
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.46
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.42
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.35
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.35
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.32
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.25
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.24
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.19
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.16
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.08
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.95
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.95
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.94
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.93
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.92
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.84
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.82
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.79
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.66
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.65
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.57
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.55
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.53
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.47
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.45
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.35
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.28
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.27
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.27
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.21
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.19
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.15
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.14
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.13
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.07
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.03
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.02
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.97
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.95
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.84
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.83
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.72
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.56
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.52
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.51
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.47
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.46
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.22
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.18
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.02
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.9
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.82
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.78
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.53
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.39
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.38
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.95
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.54
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.46
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.42
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.1
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.96
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	92.74
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.74
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.62
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	92.57
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.44
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.21
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.15
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.04
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	91.56
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.54
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.13
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	91.07
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	90.71
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	89.97
d1s24a_	56	Two-iron rubredoxin {Pseudomonas oleovorans [TaxId	89.65
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.52
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.35
d1v65a_	64	hypotheical protein 2610044O15Rik {Mouse (Mus musc	89.27
d2dsxa1	52	Rubredoxin {Desulfovibrio gigas [TaxId: 879]}	89.14
d1brfa_	53	Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2	89.12
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	88.51
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.44
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.98
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	87.91
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	86.88
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	86.47
d1dx8a_	70	Rubredoxin {Guillardia theta [TaxId: 55529]}	85.41
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	84.92
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	84.33
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	83.31

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.6e-18  Score=106.94  Aligned_cols=48  Identities=40%  Similarity=0.768  Sum_probs=23.1

Q ss_pred             CcccCCcchhhH--HhHHHHHHHHhcCCCCccccccchhh--HhhhhhhhccC
Q psy4688         340 KFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL--RGKLKEHMLNT  388 (388)
Q Consensus       340 ~~~~C~~C~~~f--~~~L~~H~~~H~~~~~~~C~~C~k~f--~~~l~~H~~~~  388 (388)
                      |||.|+ ||++|  +.+|..|+++|+|++||.|++||++|  .+.|++||++|
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            444442 44444  33444455555555555555555555  23455555444

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.9e-16  Score=98.94  Aligned_cols=53  Identities=36%  Similarity=0.761  Sum_probs=49.6

Q ss_pred             CCccccccchhccCCchHHHHHHhhcCCCCCccCCccccccCChHHHHHHHhhh
Q psy4688         102 SKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH  155 (388)
Q Consensus       102 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  155 (388)
                      ++||.|+ ||+.|..+..|..|+++|+|++||.|++|+++|.....|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            3789995 9999999999999999999999999999999999999999999876

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.4e-13  Score=76.64  Aligned_cols=36  Identities=28%  Similarity=0.542  Sum_probs=24.7

Q ss_pred             CCccccCCCcccccChhhHHhHHh-hhcCCCcccCCc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKN-WAHGDKFHLCKV  346 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~-~hh~~~~~~C~~  346 (388)
                      ++||+|++||+.|...+.|.+|++ +|.|++||.|++
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            366777777777777777777765 466677776654

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.6e-13  Score=77.76  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=21.1

Q ss_pred             hHHhhhcCCCcccCCcchhhH--HhHHHHHHHHhcCC
Q psy4688         331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGE  365 (388)
Q Consensus       331 ~H~~~hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~  365 (388)
                      +|+++|.+++||.|++||++|  +++|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            355566666666666666666  45566666666664

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-12  Score=73.68  Aligned_cols=37  Identities=38%  Similarity=0.665  Sum_probs=33.6

Q ss_pred             CCCccccccchhccCCchHHHHHHh-hcCCCCCccCCc
Q psy4688         101 VSKHFECNYCHAKFSNKSLLSDHIS-SHTGLKNYKCHV  137 (388)
Q Consensus       101 ~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~C~~  137 (388)
                      ..+||.|++||+.|...+.|.+|++ +|++++||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4689999999999999999999986 699999999975

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=3.7e-13  Score=75.63  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=16.1

Q ss_pred             HHHHhcCCCCccccccchhh--HhhhhhhhccC
Q psy4688         358 HMITHTGERKYCCHICGKKL--RGKLKEHMLNT  388 (388)
Q Consensus       358 H~~~H~~~~~~~C~~C~k~f--~~~l~~H~~~~  388 (388)
                      |.|+|+|||||+|++||++|  .+.|++||++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            34455555555555555555  34455555543

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.7e-12  Score=70.16  Aligned_cols=30  Identities=40%  Similarity=0.582  Sum_probs=16.1

Q ss_pred             hcCCCcccCCcchhhH--HhHHHHHHHHhcCC
Q psy4688         336 AHGDKFHLCKVCGAKI--KGSLKQHMITHTGE  365 (388)
Q Consensus       336 hh~~~~~~C~~C~~~f--~~~L~~H~~~H~~~  365 (388)
                      |+|+|||.|++||++|  +++|..|+++|+||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            4455555555555555  44455555555554

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.3e-12  Score=71.00  Aligned_cols=37  Identities=27%  Similarity=0.471  Sum_probs=32.7

Q ss_pred             HHHhhcCCCCCccCCccccccCChHHHHHHHhhhccc
Q psy4688         122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQE  158 (388)
Q Consensus       122 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  158 (388)
                      +|+++|++++||+|++|+++|...++|..|+++|.+|
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4788899999999999999999999999999998764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.11  E-value=1.7e-11  Score=64.14  Aligned_cols=29  Identities=24%  Similarity=0.667  Sum_probs=22.5

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      +||+|++||+.|.+++.|.+|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            46788888888888888888888877764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.3e-11  Score=68.25  Aligned_cols=32  Identities=31%  Similarity=0.609  Sum_probs=23.3

Q ss_pred             cccCC--CcccccChhhHHhHHhhhcCCCcccCC
Q psy4688         314 FKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCK  345 (388)
Q Consensus       314 ~~C~~--C~k~F~~~~~L~~H~~~hh~~~~~~C~  345 (388)
                      |.|+.  ||+.|.+++.|++|+++|.|++||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            56665  777777777777777777777777775

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.6e-11  Score=66.97  Aligned_cols=31  Identities=39%  Similarity=0.813  Sum_probs=28.3

Q ss_pred             ccCCc--chhhH--HhHHHHHHHHhcCCCCccccc
Q psy4688         342 HLCKV--CGAKI--KGSLKQHMITHTGERKYCCHI  372 (388)
Q Consensus       342 ~~C~~--C~~~f--~~~L~~H~~~H~~~~~~~C~~  372 (388)
                      |.|++  ||++|  ++.|++||++|+|++||+|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            78987  99999  678999999999999999974

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=4.3e-12  Score=75.06  Aligned_cols=38  Identities=24%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             hHHhHHhhhcCCCcccCCc--chhhH--HhHHHHHHHHhcCCC
Q psy4688         328 KLNKHKNWAHGDKFHLCKV--CGAKI--KGSLKQHMITHTGER  366 (388)
Q Consensus       328 ~L~~H~~~hh~~~~~~C~~--C~~~f--~~~L~~H~~~H~~~~  366 (388)
                      .|..|+. |.|++||.|++  |+++|  +++|+.||++|+|||
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            3444443 55555555554  55555  344555555555553

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=2.5e-11  Score=67.98  Aligned_cols=34  Identities=29%  Similarity=0.588  Sum_probs=31.4

Q ss_pred             HHhhcCCCCCccCCccccccCChHHHHHHHhhhc
Q psy4688         123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHE  156 (388)
Q Consensus       123 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  156 (388)
                      |.++|+|++||+|++|+++|..+++|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            6789999999999999999999999999999885

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.9e-11  Score=64.65  Aligned_cols=33  Identities=39%  Similarity=0.646  Sum_probs=26.5

Q ss_pred             hcCCCCCccCCccccccCChHHHHHHHhhhccc
Q psy4688         126 SHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQE  158 (388)
Q Consensus       126 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  158 (388)
                      +|+|++||+|..|+++|...+.|..|+++|.+|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            477888888888888888888888888888754

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.7e-11  Score=62.30  Aligned_cols=29  Identities=34%  Similarity=0.660  Sum_probs=22.9

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      +||.|++||+.|.+++.|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            46888888888888888888888887764

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=2.3e-11  Score=62.82  Aligned_cols=27  Identities=26%  Similarity=0.640  Sum_probs=20.2

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      +||+|++|++.|.+++.|..|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            577777777777777777777777765

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.2e-11  Score=66.51  Aligned_cols=34  Identities=32%  Similarity=0.590  Sum_probs=29.5

Q ss_pred             hhcCCCCCccCCccccccCChHHHHHHHhhhccc
Q psy4688         125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQE  158 (388)
Q Consensus       125 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  158 (388)
                      ++|+|++||+|.+|+++|...+.|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4788999999999999999999999999988754

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=4.7e-11  Score=61.61  Aligned_cols=26  Identities=35%  Similarity=0.678  Sum_probs=23.6

Q ss_pred             CCcccCCcchhhH--HhHHHHHHHHhcC
Q psy4688         339 DKFHLCKVCGAKI--KGSLKQHMITHTG  364 (388)
Q Consensus       339 ~~~~~C~~C~~~f--~~~L~~H~~~H~~  364 (388)
                      ||||+|++||++|  +++|.+||++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999  6789999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=7e-11  Score=65.59  Aligned_cols=34  Identities=32%  Similarity=0.682  Sum_probs=29.4

Q ss_pred             hhhCCCCcccCCCCcccCCChhHHHHHHHHhccC
Q psy4688         210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEG  243 (388)
Q Consensus       210 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  243 (388)
                      ++|++++||+|++||++|...+.|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            3688999999999999999999999999988754

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.98  E-value=1.4e-10  Score=60.56  Aligned_cols=28  Identities=21%  Similarity=0.536  Sum_probs=22.1

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIP  278 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~  278 (388)
                      ||+|++||+.|...+.|..|+++|+|++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCCC
Confidence            6788888888888888888888887764

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.2e-10  Score=64.49  Aligned_cols=34  Identities=29%  Similarity=0.672  Sum_probs=28.8

Q ss_pred             hhcCCCCCccCCccccccCChHHHHHHHhhhccc
Q psy4688         125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQE  158 (388)
Q Consensus       125 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  158 (388)
                      ++|+|++||+|++|++.|+...+|..|++.++.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4689999999999999999999999998766543

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.7e-10  Score=63.07  Aligned_cols=31  Identities=19%  Similarity=0.575  Sum_probs=24.2

Q ss_pred             cCCCCCccCCccccccCChHHHHHHHhhhcc
Q psy4688         127 HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQ  157 (388)
Q Consensus       127 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  157 (388)
                      |+|++||+|++|++.|....+|.+|+++|..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            5777888888888888888888888877754

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2.2e-10  Score=62.58  Aligned_cols=31  Identities=16%  Similarity=0.427  Sum_probs=24.3

Q ss_pred             hCCCCcccCCCCcccCCChhHHHHHHHHhcc
Q psy4688         212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHE  242 (388)
Q Consensus       212 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  242 (388)
                      |+|++||+|++|++.|..++.|.+|+++|.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            5778888888888888888888888877764

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-10  Score=63.38  Aligned_cols=33  Identities=18%  Similarity=0.428  Sum_probs=28.8

Q ss_pred             hhCCCCcccCCCCcccCCChhHHHHHHHHhccC
Q psy4688         211 VHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEG  243 (388)
Q Consensus       211 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  243 (388)
                      +|+|++||+|++|++.|..+++|..|++.+|.+
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            689999999999999999999999998777653

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3e-10  Score=59.21  Aligned_cols=28  Identities=25%  Similarity=0.548  Sum_probs=21.0

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIP  278 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~  278 (388)
                      ||.|++||+.|..++.|..|+++|+|++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCcC
Confidence            6777777777777777777777777763

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=9.3e-10  Score=57.62  Aligned_cols=28  Identities=25%  Similarity=0.577  Sum_probs=22.2

Q ss_pred             CccccCC--CcccccChhhHHhHHhhhcCC
Q psy4688         312 EKFKCDL--CDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       312 ~~~~C~~--C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +||+|++  |+++|.+.+.|++|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4688877  888888888888888888775

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=7.8e-10  Score=55.33  Aligned_cols=26  Identities=27%  Similarity=0.526  Sum_probs=20.9

Q ss_pred             CccccCCCcccccChhhHHhHHhhhc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAH  337 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh  337 (388)
                      +||+|+.|||.|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            47888888888888888888888773

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=5.7e-10  Score=58.60  Aligned_cols=28  Identities=32%  Similarity=0.650  Sum_probs=21.2

Q ss_pred             CccccCC--CcccccChhhHHhHHhhhcCC
Q psy4688         312 EKFKCDL--CDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       312 ~~~~C~~--C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +||.|++  |+++|.+.+.|++|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4677876  888888888888777777765

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1e-09  Score=57.62  Aligned_cols=26  Identities=35%  Similarity=0.719  Sum_probs=23.5

Q ss_pred             CcccCCc--chhhH--HhHHHHHHHHhcCC
Q psy4688         340 KFHLCKV--CGAKI--KGSLKQHMITHTGE  365 (388)
Q Consensus       340 ~~~~C~~--C~~~f--~~~L~~H~~~H~~~  365 (388)
                      |||.|++  ||++|  +++|++||++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899988  99999  67899999999997

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.8e-09  Score=57.15  Aligned_cols=29  Identities=34%  Similarity=0.734  Sum_probs=22.9

Q ss_pred             CccccC--CCcccccChhhHHhHHhhhcCCC
Q psy4688         312 EKFKCD--LCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       312 ~~~~C~--~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      +||.|+  .||+.|.+.+.|.+|+++|+|+|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            468885  48888888888888888888775

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2e-09  Score=53.79  Aligned_cols=25  Identities=36%  Similarity=0.814  Sum_probs=14.1

Q ss_pred             CcccCCCCcccCCChhHHHHHHHHh
Q psy4688         216 RKYGCDECGKMLKSRDSLNTHKKIQ  240 (388)
Q Consensus       216 ~~~~C~~C~~~f~~~~~l~~H~~~~  240 (388)
                      +||+|++||+.|...+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            3555555555555555555555554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=3.7e-10  Score=66.57  Aligned_cols=40  Identities=18%  Similarity=0.457  Sum_probs=28.8

Q ss_pred             hHHHHHHhhcCCCCCccCCc--cccccCChHHHHHHHhhhccc
Q psy4688         118 SLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLHEQE  158 (388)
Q Consensus       118 ~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  158 (388)
                      ..|..|+. |++++||.|++  |+++|...++|..|+++|.++
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            34555664 77777888866  888888777888887777765

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.3e-09  Score=49.59  Aligned_cols=26  Identities=38%  Similarity=0.719  Sum_probs=23.0

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      |++|++|+|.|+++..|+.||+.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            46899999999999999999998875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.1e-09  Score=54.44  Aligned_cols=27  Identities=30%  Similarity=0.679  Sum_probs=20.1

Q ss_pred             cccccc--cCCcCCChhHHHHHHhhcCCC
Q psy4688         251 EYECDY--CGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       251 ~~~C~~--C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      ||.|++  ||+.|...+.|..|+++|+|+
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            677777  777777777777777777764

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.3e-08  Score=53.77  Aligned_cols=28  Identities=32%  Similarity=0.753  Sum_probs=22.0

Q ss_pred             ccccc--ccCCcCCChhHHHHHHhhcCCCC
Q psy4688         251 EYECD--YCGAKYPNKYTLSDHISGHTGIP  278 (388)
Q Consensus       251 ~~~C~--~C~~~f~~~~~L~~H~~~H~~~~  278 (388)
                      ||.|+  .||++|...+.|..|+++|+|++
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            67785  48888888888888888888764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=9.4e-09  Score=53.19  Aligned_cols=27  Identities=26%  Similarity=0.695  Sum_probs=22.1

Q ss_pred             CccccCC--CcccccChhhHHhHHhhhcC
Q psy4688         312 EKFKCDL--CDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       312 ~~~~C~~--C~k~F~~~~~L~~H~~~hh~  338 (388)
                      +||+|++  |+|.|.+.+.|++|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4788877  88888888888888888875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=3.8e-08  Score=52.21  Aligned_cols=27  Identities=33%  Similarity=0.720  Sum_probs=22.2

Q ss_pred             CccccCC--CcccccChhhHHhHHhhhcC
Q psy4688         312 EKFKCDL--CDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       312 ~~~~C~~--C~k~F~~~~~L~~H~~~hh~  338 (388)
                      +||.|++  |++.|.+.+.|.+|+++|..
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            6788877  88888888888888888764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.8e-08  Score=50.71  Aligned_cols=26  Identities=23%  Similarity=0.542  Sum_probs=21.4

Q ss_pred             CccccCC--CcccccChhhHHhHHhhhc
Q psy4688         312 EKFKCDL--CDKEFFEKKKLNKHKNWAH  337 (388)
Q Consensus       312 ~~~~C~~--C~k~F~~~~~L~~H~~~hh  337 (388)
                      +||.|++  |||+|.+.++|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4788887  8888888888888888774

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.9e-08  Score=45.04  Aligned_cols=26  Identities=35%  Similarity=0.747  Sum_probs=20.1

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTG  276 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~  276 (388)
                      |.+|++|++.|..+..|+.|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            35688888888888888888887765

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=4.4e-08  Score=50.60  Aligned_cols=26  Identities=35%  Similarity=0.769  Sum_probs=14.9

Q ss_pred             cccccc--cCCcCCChhHHHHHHhhcCC
Q psy4688         251 EYECDY--CGAKYPNKYTLSDHISGHTG  276 (388)
Q Consensus       251 ~~~C~~--C~~~f~~~~~L~~H~~~H~~  276 (388)
                      ||.|++  |+++|.+.+.|..|+++|+|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccCC
Confidence            455555  66666666666666555543

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=1.5e-07  Score=49.82  Aligned_cols=26  Identities=35%  Similarity=0.708  Sum_probs=14.6

Q ss_pred             CCccCCc--cccccCChHHHHHHHhhhc
Q psy4688         131 KNYKCHV--CDKAYSCRKALKTHTLLHE  156 (388)
Q Consensus       131 ~~~~C~~--C~~~f~~~~~l~~H~~~h~  156 (388)
                      +||.|++  |+++|++.++|.+|+++|.
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            4555555  5555555555555555554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.5e-07  Score=47.67  Aligned_cols=31  Identities=26%  Similarity=0.588  Sum_probs=28.2

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCCCCcc
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHI  281 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  281 (388)
                      ...|+.||+.|.....|.+|..+|++++||.
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            4679999999999999999999999999973

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.5e-07  Score=47.75  Aligned_cols=32  Identities=31%  Similarity=0.538  Sum_probs=26.2

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCCCccc
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHL  343 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~  343 (388)
                      +...|++|||.|.....|.+|...|.|++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            34678888888888888888888888888873

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2.8e-07  Score=44.93  Aligned_cols=25  Identities=24%  Similarity=0.723  Sum_probs=19.2

Q ss_pred             CccccCCCcccccChhhHHhHHhhh
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~h  336 (388)
                      +||.|++||+.|.+....++|.++|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            5777888888887777777777765

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.2e-07  Score=47.31  Aligned_cols=24  Identities=33%  Similarity=0.808  Sum_probs=11.6

Q ss_pred             cccccc--cCCcCCChhHHHHHHhhc
Q psy4688         251 EYECDY--CGAKYPNKYTLSDHISGH  274 (388)
Q Consensus       251 ~~~C~~--C~~~f~~~~~L~~H~~~H  274 (388)
                      ||.|++  ||++|...+.|.+|+++|
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            344444  445554444455444444

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=4.5e-07  Score=44.20  Aligned_cols=26  Identities=27%  Similarity=0.685  Sum_probs=19.1

Q ss_pred             CCCccCCccccccCChHHHHHHHhhh
Q psy4688         130 LKNYKCHVCDKAYSCRKALKTHTLLH  155 (388)
Q Consensus       130 ~~~~~C~~C~~~f~~~~~l~~H~~~h  155 (388)
                      ++||.|++||+.|+.....++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            46777777777777777777777766

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5e-07  Score=44.63  Aligned_cols=28  Identities=21%  Similarity=0.577  Sum_probs=24.0

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +||.|++|+..|.++..+..|.+.|.|.
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCcccchHHHHhhccccceEeeecccCc
Confidence            6889999999999999999999888763

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=1.3e-06  Score=41.30  Aligned_cols=26  Identities=35%  Similarity=0.684  Sum_probs=23.1

Q ss_pred             ccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         315 KCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       315 ~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      +|+.|.+.|.++..|+.|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999988875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.9e-06  Score=42.58  Aligned_cols=27  Identities=33%  Similarity=0.787  Sum_probs=21.5

Q ss_pred             CcccccccCCcCCChhHHHHHHhhcCC
Q psy4688         250 YEYECDYCGAKYPNKYTLSDHISGHTG  276 (388)
Q Consensus       250 ~~~~C~~C~~~f~~~~~L~~H~~~H~~  276 (388)
                      +||.|++|+..|..+..+..|.++|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            378888888888888888888888776

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.2e-06  Score=41.28  Aligned_cols=28  Identities=29%  Similarity=0.529  Sum_probs=18.2

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +||+|.+|...-...+.|..|++.|+|+
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CcceeeecccccCCchheEEeeecccCc
Confidence            4666666666666666666666666653

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.3e-06  Score=42.33  Aligned_cols=27  Identities=33%  Similarity=0.767  Sum_probs=21.9

Q ss_pred             CccccCC--CcccccChhhHHhHHhhhcC
Q psy4688         312 EKFKCDL--CDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       312 ~~~~C~~--C~k~F~~~~~L~~H~~~hh~  338 (388)
                      +||.|.+  |+|++...++|++|++.+||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            3677777  88888888888888888775

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.8e-06  Score=40.78  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=18.5

Q ss_pred             cccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      |.|+.||......+-|++|+++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            567777777777777777777766653

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=4.8e-06  Score=40.40  Aligned_cols=26  Identities=35%  Similarity=0.724  Sum_probs=20.5

Q ss_pred             ccccccCCcCCChhHHHHHHhhcCCC
Q psy4688         252 YECDYCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       252 ~~C~~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      |.|++||......+.|+.|+++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            67888888888888888888888775

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.9e-06  Score=39.88  Aligned_cols=26  Identities=35%  Similarity=0.681  Sum_probs=17.0

Q ss_pred             cccCCCcccccChhhHHhHHhhhcCC
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +.|..|||.|...+.|++|...|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            35666777777777777766666653

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=5.6e-06  Score=39.86  Aligned_cols=28  Identities=29%  Similarity=0.538  Sum_probs=21.9

Q ss_pred             CcccccccCCcCCChhHHHHHHhhcCCC
Q psy4688         250 YEYECDYCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       250 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      +||+|..|+..-++.+.|..|++.|+|+
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CcceeeecccccCCchheEEeeecccCc
Confidence            3788888888888888888888888763

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=7.7e-06  Score=38.55  Aligned_cols=26  Identities=42%  Similarity=0.681  Sum_probs=19.6

Q ss_pred             cccccCCcCCChhHHHHHHhhcCCCC
Q psy4688         253 ECDYCGAKYPNKYTLSDHISGHTGIP  278 (388)
Q Consensus       253 ~C~~C~~~f~~~~~L~~H~~~H~~~~  278 (388)
                      +|+.|.++|.++..|+.|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57777777777777777777777753

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.5e-05  Score=38.21  Aligned_cols=26  Identities=31%  Similarity=0.502  Sum_probs=19.1

Q ss_pred             ccccccCCcCCChhHHHHHHhhcCCC
Q psy4688         252 YECDYCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       252 ~~C~~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      ..|..||+.|...+.|++|...|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            45777777777777777777777764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.5e-05  Score=39.40  Aligned_cols=25  Identities=36%  Similarity=0.577  Sum_probs=13.9

Q ss_pred             cccCCC--CcccCCChhHHHHHHHHhc
Q psy4688         217 KYGCDE--CGKMLKSRDSLNTHKKIQH  241 (388)
Q Consensus       217 ~~~C~~--C~~~f~~~~~l~~H~~~~~  241 (388)
                      ||.|.+  |++++...++|++|++.+|
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhC
Confidence            555554  5555555555555555544

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.57  E-value=3.3e-05  Score=35.74  Aligned_cols=24  Identities=33%  Similarity=0.688  Sum_probs=15.5

Q ss_pred             ccccccCCcCCChhHHHHHHhhcC
Q psy4688         252 YECDYCGAKYPNKYTLSDHISGHT  275 (388)
Q Consensus       252 ~~C~~C~~~f~~~~~L~~H~~~H~  275 (388)
                      |+|..|.++|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            456666666666666666666653

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.55  E-value=2.5e-05  Score=36.12  Aligned_cols=23  Identities=39%  Similarity=0.964  Sum_probs=19.2

Q ss_pred             cccCCCcccccChhhHHhHHhhh
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~h  336 (388)
                      |+|.+|.++|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            57888888888888888888876

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2.7e-05  Score=37.83  Aligned_cols=28  Identities=36%  Similarity=0.674  Sum_probs=23.8

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +||+|+.|..--.+.++|..|++..||+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            4788999988888899999998888775

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.47  E-value=3.9e-05  Score=41.07  Aligned_cols=31  Identities=29%  Similarity=0.678  Sum_probs=25.0

Q ss_pred             CCCccccCCCcccccChhhHHhHHhhhcCCC
Q psy4688         310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDK  340 (388)
Q Consensus       310 ~~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~  340 (388)
                      |.+.|+|.+|++.|.+-.+|=-||+.|..++
T Consensus         2 p~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           2 PPRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCCccCCCCCCCccCCcccccchHhhhcchH
Confidence            3467899999999999999999988876544

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=4.1e-05  Score=36.49  Aligned_cols=25  Identities=32%  Similarity=0.597  Sum_probs=15.8

Q ss_pred             CccccCCCcccccChhhHHhHHhhh
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~h  336 (388)
                      +||+|..|+..-...++|++|+|+|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            4566666666666666666666655

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.35  E-value=5.8e-05  Score=36.41  Aligned_cols=25  Identities=40%  Similarity=0.749  Sum_probs=17.3

Q ss_pred             CCccCCc--cccccCChHHHHHHHhhh
Q psy4688         131 KNYKCHV--CDKAYSCRKALKTHTLLH  155 (388)
Q Consensus       131 ~~~~C~~--C~~~f~~~~~l~~H~~~h  155 (388)
                      .||+|+.  |++.|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4666654  777777777777777665

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=5.9e-05  Score=36.50  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=19.4

Q ss_pred             ccccCCCcccccChhhHHhHHhh
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNW  335 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~  335 (388)
                      ||.|..|...|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57888888888888888888875

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.0001  Score=35.79  Aligned_cols=28  Identities=18%  Similarity=0.510  Sum_probs=22.7

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +||+|..|...-...++|+.|+++.|+.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            4788888888888888888888887753

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.27  E-value=7.6e-05  Score=35.98  Aligned_cols=24  Identities=29%  Similarity=0.696  Sum_probs=19.9

Q ss_pred             ccccCC--CcccccChhhHHhHHhhh
Q psy4688         313 KFKCDL--CDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       313 ~~~C~~--C~k~F~~~~~L~~H~~~h  336 (388)
                      ||+|+.  |++.|+..+.|++|.+.|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            677865  999999999999988765

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=7e-05  Score=36.13  Aligned_cols=27  Identities=26%  Similarity=0.637  Sum_probs=19.9

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      .|.|..|...|..+..|+.||.+|+|+
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccCC
Confidence            367777777777777777777777764

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00015  Score=34.93  Aligned_cols=28  Identities=25%  Similarity=0.603  Sum_probs=20.2

Q ss_pred             CccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      ..|.|.+|...|.+.-.|+.||-.|.|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            3477777777777777777777777664

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.15  E-value=0.00013  Score=39.04  Aligned_cols=27  Identities=22%  Similarity=0.632  Sum_probs=18.5

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCCC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      .|+|.+|++.|.+-.+|--|++.|..+
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             ccCCCCCCCccCCcccccchHhhhcch
Confidence            467777777777777777777766543

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.14  E-value=0.00011  Score=36.62  Aligned_cols=26  Identities=27%  Similarity=0.699  Sum_probs=21.4

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      ||.|.+|++.|.++..|.+|...-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            68889999999999988888876554

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00034  Score=33.95  Aligned_cols=28  Identities=29%  Similarity=0.597  Sum_probs=17.2

Q ss_pred             CcCCCCCcCCcCCCcHHHHHHHHhhccC
Q psy4688          40 KTKTCPICNKSYPGARNMRKHLRLVHDK   67 (388)
Q Consensus        40 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~   67 (388)
                      ++|.|..|.....+.++|..|++..|..
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            3566666666666666666666665544

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00017  Score=38.64  Aligned_cols=26  Identities=35%  Similarity=0.883  Sum_probs=22.9

Q ss_pred             CCCCCccCCccccccCChHHHHHHHh
Q psy4688         128 TGLKNYKCHVCDKAYSCRKALKTHTL  153 (388)
Q Consensus       128 ~~~~~~~C~~C~~~f~~~~~l~~H~~  153 (388)
                      +|.+||.|.+|++.|-++.++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            47789999999999999999999964

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00019  Score=34.16  Aligned_cols=25  Identities=24%  Similarity=0.595  Sum_probs=13.3

Q ss_pred             cccccccCCcCCChhHHHHHHhhcC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHT  275 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~  275 (388)
                      ||+|..|+..-...++|..|+++|+
T Consensus         3 p~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           3 PYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CcccccccchhcchhhHhhhhhccc
Confidence            4555555555555555555555553

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00019  Score=34.65  Aligned_cols=22  Identities=32%  Similarity=0.676  Sum_probs=11.2

Q ss_pred             cccCCCCcccCCChhHHHHHHH
Q psy4688         217 KYGCDECGKMLKSRDSLNTHKK  238 (388)
Q Consensus       217 ~~~C~~C~~~f~~~~~l~~H~~  238 (388)
                      ||.|..|...|.++.+|..||+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            3445555555555555555554

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00015  Score=36.08  Aligned_cols=25  Identities=24%  Similarity=0.533  Sum_probs=15.2

Q ss_pred             ccccCC--CcccccChhhHHhHH-hhhc
Q psy4688         313 KFKCDL--CDKEFFEKKKLNKHK-NWAH  337 (388)
Q Consensus       313 ~~~C~~--C~k~F~~~~~L~~H~-~~hh  337 (388)
                      ||.|++  |.|.|+..+.-.+|+ |+|.
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccccCCChhhhhcchhhhhhhcccccc
Confidence            566655  666666666666665 4443

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00025  Score=37.93  Aligned_cols=24  Identities=33%  Similarity=0.740  Sum_probs=15.5

Q ss_pred             CCCcccCCCCcccCCChhHHHHHH
Q psy4688         214 SVRKYGCDECGKMLKSRDSLNTHK  237 (388)
Q Consensus       214 ~~~~~~C~~C~~~f~~~~~l~~H~  237 (388)
                      |.+||.|.+|++.|-.+.++.+|.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhh
Confidence            456666666666666666666664

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.84  E-value=0.00039  Score=33.62  Aligned_cols=27  Identities=30%  Similarity=0.626  Sum_probs=20.2

Q ss_pred             ccccCC--CcccccChhhHHhHHhhhcCC
Q psy4688         313 KFKCDL--CDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       313 ~~~C~~--C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      ||.|..  |.|.|.+...|.+|..+|.|+
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CcCcccccccccchhhhhhhhhhccccCC
Confidence            566654  888888888888888777764

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.83  E-value=0.00026  Score=35.22  Aligned_cols=25  Identities=24%  Similarity=0.720  Sum_probs=12.8

Q ss_pred             ccccccchhcccChhhHHHHHHhhc
Q psy4688          70 TTTCTMCKKTFRNKATFQKHMQRAH   94 (388)
Q Consensus        70 ~~~C~~C~~~f~~~~~l~~H~~~~h   94 (388)
                      ||.|.+|++.|..+..|.+|.+..|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            3455555555555555555554444

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00058  Score=33.06  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=12.2

Q ss_pred             cccCCCCcccCCChhHHHHHHHHhc
Q psy4688         217 KYGCDECGKMLKSRDSLNTHKKIQH  241 (388)
Q Consensus       217 ~~~C~~C~~~f~~~~~l~~H~~~~~  241 (388)
                      ||+|+.|...-...++|..|++.-|
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHHHHc
Confidence            4555555444444555555544433

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.00072  Score=31.13  Aligned_cols=23  Identities=35%  Similarity=0.769  Sum_probs=18.3

Q ss_pred             ccccCCCcccccChhhHHhHHhh
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNW  335 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~  335 (388)
                      ||+|.-|...|..+..|+.||-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            67888888888888888888753

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.00092  Score=31.62  Aligned_cols=23  Identities=35%  Similarity=0.772  Sum_probs=18.7

Q ss_pred             ccccCCCcccccChhhHHhHHhh
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNW  335 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~  335 (388)
                      ||+|..|||.+.++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            57888888888888888888653

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.51  E-value=0.00076  Score=31.19  Aligned_cols=24  Identities=33%  Similarity=0.725  Sum_probs=21.2

Q ss_pred             cccCCCcccccChhhHHhHHhhhc
Q psy4688         314 FKCDLCDKEFFEKKKLNKHKNWAH  337 (388)
Q Consensus       314 ~~C~~C~k~F~~~~~L~~H~~~hh  337 (388)
                      |.|+.|-+.|.++.++..|.++-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            789999999999999999988754

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0004  Score=34.48  Aligned_cols=14  Identities=21%  Similarity=0.560  Sum_probs=5.7

Q ss_pred             cCCcCCChhHHHHH
Q psy4688         257 CGAKYPNKYTLSDH  270 (388)
Q Consensus       257 C~~~f~~~~~L~~H  270 (388)
                      |.+.|.+.+.-..|
T Consensus        10 C~KafsNsSDraKH   23 (31)
T d2glia4          10 CSKAFSNASDRAKH   23 (31)
T ss_dssp             CCCEESSSSTTHHH
T ss_pred             hhhhhcchhhhhhh
Confidence            44444444443344

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.00085  Score=30.88  Aligned_cols=22  Identities=32%  Similarity=0.682  Sum_probs=13.8

Q ss_pred             ccccccchhcccChhhHHHHHH
Q psy4688          70 TTTCTMCKKTFRNKATFQKHMQ   91 (388)
Q Consensus        70 ~~~C~~C~~~f~~~~~l~~H~~   91 (388)
                      ||+|..|...|..+.+|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.22  E-value=0.0015  Score=31.49  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=12.5

Q ss_pred             cccCCC--CcccCCChhHHHHHHHHhc
Q psy4688         217 KYGCDE--CGKMLKSRDSLNTHKKIQH  241 (388)
Q Consensus       217 ~~~C~~--C~~~f~~~~~l~~H~~~~~  241 (388)
                      ||.|..  |.+.|.+...|.+|..+|.
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CcCcccccccccchhhhhhhhhhcccc
Confidence            444433  5555555555555554443

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0019  Score=30.47  Aligned_cols=22  Identities=36%  Similarity=0.699  Sum_probs=14.0

Q ss_pred             cccccccCCcCCChhHHHHHHh
Q psy4688         251 EYECDYCGAKYPNKYTLSDHIS  272 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~  272 (388)
                      ||+|..||+.|-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4666666666666666666653

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0016  Score=36.16  Aligned_cols=24  Identities=29%  Similarity=0.661  Sum_probs=21.9

Q ss_pred             ccccCCCcccccChhhHHhHHhhh
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~h  336 (388)
                      -|.|.+|||.|.....|+.|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            588999999999999999998866

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0026  Score=33.55  Aligned_cols=28  Identities=25%  Similarity=0.586  Sum_probs=19.0

Q ss_pred             CCCcccC--CCCcccCCChhHHHHHHHHhc
Q psy4688         214 SVRKYGC--DECGKMLKSRDSLNTHKKIQH  241 (388)
Q Consensus       214 ~~~~~~C--~~C~~~f~~~~~l~~H~~~~~  241 (388)
                      .++||.|  +-|+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3667777  347777777777777776654

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.90  E-value=0.0018  Score=29.90  Aligned_cols=24  Identities=33%  Similarity=0.879  Sum_probs=15.2

Q ss_pred             CCCCCcCCcCCCcHHHHHHHHhhc
Q psy4688          42 KTCPICNKSYPGARNMRKHLRLVH   65 (388)
Q Consensus        42 ~~C~~C~~~f~~~~~l~~H~~~~h   65 (388)
                      |.|+.|-+.|..+.++..|.+..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            556666666666666666665544

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0022  Score=35.51  Aligned_cols=25  Identities=24%  Similarity=0.571  Sum_probs=22.5

Q ss_pred             cccccccCCcCCChhHHHHHHhhcC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHT  275 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~  275 (388)
                      .|.|..|||.|+....|+.|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            5889999999999999999998874

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0034  Score=29.85  Aligned_cols=25  Identities=24%  Similarity=0.305  Sum_probs=20.1

Q ss_pred             ccccCCCcccccChhhHHhHHhhhc
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAH  337 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh  337 (388)
                      |-+|+.|..+.+++..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4578888888888888888888764

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0032  Score=29.82  Aligned_cols=25  Identities=36%  Similarity=0.617  Sum_probs=19.7

Q ss_pred             ccccCCCcccccChhhHHhHHhhhc
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAH  337 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh  337 (388)
                      .|+|+.|+-...+++.|+.|++.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4778888888888888888887644

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0049  Score=32.44  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=20.8

Q ss_pred             CCcccc--CCCcccccChhhHHhHHhhhc
Q psy4688         311 IEKFKC--DLCDKEFFEKKKLNKHKNWAH  337 (388)
Q Consensus       311 ~~~~~C--~~C~k~F~~~~~L~~H~~~hh  337 (388)
                      .+||.|  +-|+.+|.+...|..|...|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            577888  558888888888888877664

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0052  Score=29.19  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=12.3

Q ss_pred             ccCCCCcccCCChhHHHHHHHHh
Q psy4688         218 YGCDECGKMLKSRDSLNTHKKIQ  240 (388)
Q Consensus       218 ~~C~~C~~~f~~~~~l~~H~~~~  240 (388)
                      -+|+.|..+..++..|+.|.++|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            34555555555555555555544

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0086  Score=28.80  Aligned_cols=27  Identities=22%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      .|.|..|||...+...++.|+..-|+.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~   28 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNS   28 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             ceechhHHHHHhhccCceEEEeecccC
Confidence            478888888888888888887765543

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.009  Score=30.22  Aligned_cols=26  Identities=23%  Similarity=0.715  Sum_probs=19.7

Q ss_pred             cccccccCCcCCChhHHHHHHhhcCC
Q psy4688         251 EYECDYCGAKYPNKYTLSDHISGHTG  276 (388)
Q Consensus       251 ~~~C~~C~~~f~~~~~L~~H~~~H~~  276 (388)
                      .|.|..||+.|..+..+.+|...-.|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47788888888888888888766555

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.01  Score=29.99  Aligned_cols=26  Identities=27%  Similarity=0.692  Sum_probs=21.7

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcC
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      .|.|..|||.|.+...+.+|...-.|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            58899999999999999999776544

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.016  Score=27.40  Aligned_cols=22  Identities=18%  Similarity=0.652  Sum_probs=10.8

Q ss_pred             ccCCCCcccCCChhHHHHHHHH
Q psy4688         218 YGCDECGKMLKSRDSLNTHKKI  239 (388)
Q Consensus       218 ~~C~~C~~~f~~~~~l~~H~~~  239 (388)
                      |+|+.|+-....++.|+.|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            4455555545555555554443

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.0085  Score=30.83  Aligned_cols=20  Identities=30%  Similarity=0.453  Sum_probs=14.8

Q ss_pred             CCcCCChhHHHHHHhhcCCC
Q psy4688         258 GAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       258 ~~~f~~~~~L~~H~~~H~~~  277 (388)
                      ++.|..+..|..||++|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            45577778888888888764

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.028  Score=28.86  Aligned_cols=23  Identities=17%  Similarity=0.101  Sum_probs=16.9

Q ss_pred             CCCcccccChhhHHhHHhhhcCC
Q psy4688         317 DLCDKEFFEKKKLNKHKNWAHGD  339 (388)
Q Consensus       317 ~~C~k~F~~~~~L~~H~~~hh~~  339 (388)
                      +-=++.|..+..|..|||.|+||
T Consensus        11 ~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          11 SRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCcchhHHHHHHHHhhcCCC
Confidence            33356688888888888888775

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.082  Score=25.29  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=14.9

Q ss_pred             cCCCCCcCCcCCCcHHHHHHHHhhc
Q psy4688          41 TKTCPICNKSYPGARNMRKHLRLVH   65 (388)
Q Consensus        41 ~~~C~~C~~~f~~~~~l~~H~~~~h   65 (388)
                      .|+|..||+...+...++-|+-..|
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             ceechhHHHHHhhccCceEEEeecc
Confidence            3566666666666666666654434

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.74  E-value=0.016  Score=31.04  Aligned_cols=9  Identities=22%  Similarity=0.903  Sum_probs=4.6

Q ss_pred             ccccCCCcc
Q psy4688         313 KFKCDLCDK  321 (388)
Q Consensus       313 ~~~C~~C~k  321 (388)
                      .|.|++||.
T Consensus         5 ~~~C~vCG~   13 (37)
T d1nnqa2           5 VYICPICGY   13 (37)
T ss_dssp             EEECTTTCC
T ss_pred             EEECCCCCC
Confidence            355555554

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.03  Score=26.63  Aligned_cols=19  Identities=26%  Similarity=0.394  Sum_probs=16.7

Q ss_pred             CCcccccChhhHHhHHhhh
Q psy4688         318 LCDKEFFEKKKLNKHKNWA  336 (388)
Q Consensus       318 ~C~k~F~~~~~L~~H~~~h  336 (388)
                      -|+|.|...+.+++|+-+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            3999999999999998775

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.62  E-value=0.043  Score=27.37  Aligned_cols=23  Identities=26%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             CccccCCCcccccChhhHHhHHh
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKN  334 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~  334 (388)
                      ..|.|+-||-.|++.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            46889999999999999998875

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=92.57  E-value=0.019  Score=30.44  Aligned_cols=11  Identities=45%  Similarity=0.661  Sum_probs=5.2

Q ss_pred             CCCCccccccc
Q psy4688         364 GERKYCCHICG  374 (388)
Q Consensus       364 ~~~~~~C~~C~  374 (388)
                      |+.|-+|++||
T Consensus        17 g~~Pe~CPvCg   27 (36)
T d1yuza2          17 GEDFEKCPICF   27 (36)
T ss_dssp             SSCCSBCTTTC
T ss_pred             CCCCCcCCCCC
Confidence            34444555554

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.44  E-value=0.027  Score=27.52  Aligned_cols=27  Identities=44%  Similarity=0.909  Sum_probs=20.5

Q ss_pred             ccccc--ccCCcCCChhHHHHHHhhcCCC
Q psy4688         251 EYECD--YCGAKYPNKYTLSDHISGHTGI  277 (388)
Q Consensus       251 ~~~C~--~C~~~f~~~~~L~~H~~~H~~~  277 (388)
                      .|.|+  .|+..|.....|..|+-.|+|+
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            35664  4888888888888888888774

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.21  E-value=0.067  Score=29.33  Aligned_cols=31  Identities=19%  Similarity=0.321  Sum_probs=25.0

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcCCCc
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHGDKF  341 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~~~~  341 (388)
                      +.|-.|++|+....+..+|++|+..-|-.+|
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            4678899999999999999999887665443

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.15  E-value=0.037  Score=27.04  Aligned_cols=27  Identities=33%  Similarity=0.669  Sum_probs=18.6

Q ss_pred             ccccc--cchhccCCchHHHHHHhhcCCC
Q psy4688         104 HFECN--YCHAKFSNKSLLSDHISSHTGL  130 (388)
Q Consensus       104 ~~~C~--~C~~~f~~~~~L~~H~~~h~~~  130 (388)
                      .|.|.  .|+..|+....|..|+-.|+|+
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            45664  4777777777777777777664

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.04  E-value=0.048  Score=27.19  Aligned_cols=24  Identities=17%  Similarity=0.404  Sum_probs=16.0

Q ss_pred             hCCcCCCCCcCCcCCCcHHHHHHH
Q psy4688          38 KNKTKTCPICNKSYPGARNMRKHL   61 (388)
Q Consensus        38 ~~~~~~C~~C~~~f~~~~~l~~H~   61 (388)
                      +.-.|.|+-||..|++.+.|..|.
T Consensus         5 kparf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cccceeccccceeecChhHHHhhh
Confidence            444567777777777777776664

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.047  Score=25.92  Aligned_cols=18  Identities=17%  Similarity=0.576  Sum_probs=13.7

Q ss_pred             cCCcCCChhHHHHHHhhc
Q psy4688         257 CGAKYPNKYTLSDHISGH  274 (388)
Q Consensus       257 C~~~f~~~~~L~~H~~~H  274 (388)
                      |++.|++.+.++.|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            777777777777777666

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.54  E-value=0.03  Score=33.84  Aligned_cols=33  Identities=21%  Similarity=0.522  Sum_probs=16.1

Q ss_pred             ccccCCCcccccChhhHHhHHhhhcCCCcccCCcch
Q psy4688         313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCG  348 (388)
Q Consensus       313 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~~~~C~~C~  348 (388)
                      .|.|+.|+++|+.-..++-   .--.+..|.|.+|+
T Consensus        14 ~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~   46 (62)
T d1vd4a_          14 SFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCH   46 (62)
T ss_dssp             EEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSC
T ss_pred             ceECCCCCCCcchhhHHHh---cCcCCCeEEecCCC
Confidence            4666666666655444432   11223345566665

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.022  Score=34.45  Aligned_cols=36  Identities=22%  Similarity=0.636  Sum_probs=19.5

Q ss_pred             CcCCCCCcCCcCCCcHHHHHHHHhhccCCCccccccchhc
Q psy4688          40 KTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKT   79 (388)
Q Consensus        40 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~   79 (388)
                      ..|+||.|+++|+....+.    +.-.....|.|.+|+..
T Consensus        13 ~~y~Cp~C~~~ys~Lda~~----L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          13 ASFKCPVCSSTFTDLEANQ----LFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHH----HEETTTTEEBCSSSCCB
T ss_pred             CceECCCCCCCcchhhHHH----hcCcCCCeEEecCCCCE
Confidence            4566666666665544432    12333455666666544

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.07  E-value=0.11  Score=28.51  Aligned_cols=27  Identities=37%  Similarity=0.712  Sum_probs=17.4

Q ss_pred             CCCcccccccccCCchHHHHhHHhhhC
Q psy4688         187 RVTVCPKCNRDYRNPRNMRKHLRRVHT  213 (388)
Q Consensus       187 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  213 (388)
                      .+..|++|+...+...+|++|+...|-
T Consensus        23 qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            344577777777777777777665553

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.71  E-value=0.098  Score=30.38  Aligned_cols=43  Identities=19%  Similarity=0.503  Sum_probs=22.3

Q ss_pred             CccccccccccccccccchhhccccccccCCCCCccccCCCccc
Q psy4688         279 NHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKE  322 (388)
Q Consensus       279 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~  322 (388)
                      .|+|.+||..|.-...-..+.+..-..+...| ..|.|++|+..
T Consensus         3 ky~C~~CgyiYd~~~Gd~~~gi~pGT~F~~LP-~dw~CP~C~a~   45 (53)
T d1iroa_           3 KYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIP-DDWVCPLCGVG   45 (53)
T ss_dssp             CEEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCB
T ss_pred             CeEcCCCCcEECcccCCcccCCCCCCCHHHCC-CCCCCcCCCCc
Confidence            47777787777654433333222111222222 34788888753

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.97  E-value=0.11  Score=24.77  Aligned_cols=21  Identities=33%  Similarity=0.667  Sum_probs=17.5

Q ss_pred             CCCcccccChhhHHhHHhhhc
Q psy4688         317 DLCDKEFFEKKKLNKHKNWAH  337 (388)
Q Consensus       317 ~~C~k~F~~~~~L~~H~~~hh  337 (388)
                      +-||+.|++...|..|++.-|
T Consensus         6 ~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGG
T ss_pred             CCchhhhccHHHHHhHHHHHH
Confidence            459999999999999987644

>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Two-iron rubredoxin
species: Pseudomonas oleovorans [TaxId: 301]

Probab=89.65  E-value=0.083  Score=31.04  Aligned_cols=43  Identities=21%  Similarity=0.478  Sum_probs=21.4

Q ss_pred             CCccccccccccccccccchhhccccccccCCCCCccccCCCcc
Q psy4688         278 PNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDK  321 (388)
Q Consensus       278 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k  321 (388)
                      +.|+|.+||..|.-...-..+.+..-..+...+ .-|.|++|+.
T Consensus         3 kky~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP-~dw~CP~C~a   45 (56)
T d1s24a_           3 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIP-DDWCCPDCGA   45 (56)
T ss_dssp             CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCC-TTCCCSSSCC
T ss_pred             ccEECCCCCcEECcccCCcccCcCCCCChhhCC-CCCCCcCCCC
Confidence            457777777777544332222222211222222 3478888864

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=0.067  Score=32.85  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=10.9

Q ss_pred             ccccccchhccCCchHHHHHH
Q psy4688         104 HFECNYCHAKFSNKSLLSDHI  124 (388)
Q Consensus       104 ~~~C~~C~~~f~~~~~L~~H~  124 (388)
                      .|.|..|++.|.+...|..|+
T Consensus        15 qfYCv~C~K~F~se~~l~~H~   35 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHF   35 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHT
T ss_pred             EEecccccCccCCHHHHHHHH
Confidence            345555555555555555554

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.35  E-value=0.056  Score=33.19  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=21.6

Q ss_pred             CccccCCCcccccChhhHHhHHhh
Q psy4688         312 EKFKCDLCDKEFFEKKKLNKHKNW  335 (388)
Q Consensus       312 ~~~~C~~C~k~F~~~~~L~~H~~~  335 (388)
                      ..|-|..|+|.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            458999999999999999999875

>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: KRAB domain (Kruppel-associated box)
superfamily: KRAB domain (Kruppel-associated box)
family: KRAB domain (Kruppel-associated box)
domain: hypotheical protein 2610044O15Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.27  E-value=0.011  Score=35.92  Aligned_cols=25  Identities=12%  Similarity=0.165  Sum_probs=22.8

Q ss_pred             ccccceeeecccccCCCCCceeeec
Q psy4688           3 FDRAEVFLSQNVQMSNLSGSCVVDV   27 (388)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~   27 (388)
                      ||++|+.||++||++|+.+..++..
T Consensus        25 Ld~~Qk~LyrdVm~Eny~~l~slg~   49 (64)
T d1v65a_          25 LDSSQKRLYEEVMLETYQNLTDIGY   49 (64)
T ss_dssp             SCHHHHHHHHHHHHHTTTSCCCSCC
T ss_pred             cCHHHHHHHHHhHHHHhhhhheecc
Confidence            9999999999999999999877764

>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=89.14  E-value=0.14  Score=29.59  Aligned_cols=42  Identities=24%  Similarity=0.581  Sum_probs=21.8

Q ss_pred             CccccccccccccccccchhhccccccccCCCCCccccCCCcc
Q psy4688         279 NHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDK  321 (388)
Q Consensus       279 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k  321 (388)
                      .|+|.+||..|.-...-..+.+..-..+...+ ..|.|++|+.
T Consensus         3 ~y~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP-~~w~CP~C~a   44 (52)
T d2dsxa1           3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLP-DDWACPVCGA   44 (52)
T ss_dssp             CEEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCC
T ss_pred             eEEeCCCCeEECcccCCcccCCCCCCCHHHCC-CCCCCcCCCC
Confidence            46777777777544433333222211222222 4578888875

>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.12  E-value=0.13  Score=29.82  Aligned_cols=42  Identities=26%  Similarity=0.601  Sum_probs=20.7

Q ss_pred             CccccccccccccccccchhhccccccccCCCCCccccCCCcc
Q psy4688         279 NHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDK  321 (388)
Q Consensus       279 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k  321 (388)
                      .|+|.+||..|.....-....+..-..+...| ..|.|++|+.
T Consensus         2 ky~C~~CgyiYd~~~Gd~~~gi~pGT~f~dLP-~dw~CP~C~a   43 (53)
T d1brfa_           2 KWVCKICGYIYDEDAGDPDNGISPGTKFEELP-DDWVCPICGA   43 (53)
T ss_dssp             EEEETTTCCEEETTTCBGGGTBCTTCCGGGSC-TTCBCTTTCC
T ss_pred             ceECCCCCcEECcccCCcccCCCCCCCHHHCC-CCCCCcCCCC
Confidence            36777777777544333322221111122222 3578888875

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.51  E-value=0.17  Score=24.05  Aligned_cols=20  Identities=50%  Similarity=0.951  Sum_probs=16.0

Q ss_pred             CCcccCCChhHHHHHHHHhc
Q psy4688         222 ECGKMLKSRDSLNTHKKIQH  241 (388)
Q Consensus       222 ~C~~~f~~~~~l~~H~~~~~  241 (388)
                      -||+.|+++..|+.|.+..|
T Consensus         7 gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           7 GCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTCCEESSHHHHHHHHHHGG
T ss_pred             CchhhhccHHHHHhHHHHHH
Confidence            48888888888888887665

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.44  E-value=0.17  Score=24.18  Aligned_cols=24  Identities=42%  Similarity=0.755  Sum_probs=16.4

Q ss_pred             cccc--cchhcccChhhHHHHHHhhc
Q psy4688          71 TTCT--MCKKTFRNKATFQKHMQRAH   94 (388)
Q Consensus        71 ~~C~--~C~~~f~~~~~l~~H~~~~h   94 (388)
                      |+|+  -|+-+|.++..++.|..+.|
T Consensus         3 f~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcceEEeehHHHHHHHhhhc
Confidence            4554  37777777777777776655

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.98  E-value=0.25  Score=23.55  Aligned_cols=25  Identities=44%  Similarity=0.767  Sum_probs=18.7

Q ss_pred             cccC--CCcccccChhhHHhHHhhhcC
Q psy4688         314 FKCD--LCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       314 ~~C~--~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      |+|+  .|+-.|.++.++++|...-|+
T Consensus         3 f~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             ccccCCCcceEEeehHHHHHHHhhhcc
Confidence            5554  488888888888888776554

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.91  E-value=0.14  Score=25.89  Aligned_cols=25  Identities=28%  Similarity=0.632  Sum_probs=13.4

Q ss_pred             cCCCCCcCCcCCCcHHHHHHHHhhc
Q psy4688          41 TKTCPICNKSYPGARNMRKHLRLVH   65 (388)
Q Consensus        41 ~~~C~~C~~~f~~~~~l~~H~~~~h   65 (388)
                      .|.|.+|.+++...+++-+|.-..|
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             EEEeehhhHHHHHHHHHHHHHHhhc
Confidence            4555555555555555555544433

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.88  E-value=0.27  Score=29.08  Aligned_cols=28  Identities=21%  Similarity=0.504  Sum_probs=24.4

Q ss_pred             CCccccCCCcccccChhhHHhHHhhhcC
Q psy4688         311 IEKFKCDLCDKEFFEKKKLNKHKNWAHG  338 (388)
Q Consensus       311 ~~~~~C~~C~k~F~~~~~L~~H~~~hh~  338 (388)
                      ...|+|..|+-.|.+...|..|+..|..
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhccH
Confidence            4579999999999999999999988753

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=0.15  Score=26.01  Aligned_cols=28  Identities=25%  Similarity=0.528  Sum_probs=18.2

Q ss_pred             cCCCCCcCCcCCCcHHHHHHHHhhccCC
Q psy4688          41 TKTCPICNKSYPGARNMRKHLRLVHDKN   68 (388)
Q Consensus        41 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~   68 (388)
                      ..+|-.|-++|++...+.+|.-.+|..+
T Consensus         3 kltclecmrtfkssfsiwrhqvevhnqn   30 (41)
T d1wjpa3           3 KLTCLECMRTFKSSFSIWRHQVEVHNQN   30 (41)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHHHTSCCC
T ss_pred             cccHHHHHHHHHHHHHHHHhhheecccc
Confidence            3566777777777777777766556543

>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Guillardia theta [TaxId: 55529]

Probab=85.41  E-value=0.29  Score=30.10  Aligned_cols=14  Identities=21%  Similarity=0.387  Sum_probs=8.3

Q ss_pred             CCcccccccccccc
Q psy4688         278 PNHICKICNKGYAC  291 (388)
Q Consensus       278 ~~~~C~~C~k~f~~  291 (388)
                      ..|+|.+|+..|.-
T Consensus         6 ~ky~C~~CgyiYDp   19 (70)
T d1dx8a_           6 GKYECEACGYIYEP   19 (70)
T ss_dssp             SCEEETTTCCEECT
T ss_pred             CeEEcCCCCeEECc
Confidence            35666666666543

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=84.92  E-value=0.28  Score=22.78  Aligned_cols=20  Identities=25%  Similarity=0.379  Sum_probs=15.2

Q ss_pred             CCcccccChhhHHhHHhhhc
Q psy4688         318 LCDKEFFEKKKLNKHKNWAH  337 (388)
Q Consensus       318 ~C~k~F~~~~~L~~H~~~hh  337 (388)
                      -|++.|..-..|+.|+-+|+
T Consensus         8 ~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeeccc
Confidence            48888888888888876653

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.33  E-value=0.39  Score=28.35  Aligned_cols=25  Identities=28%  Similarity=0.700  Sum_probs=12.6

Q ss_pred             CccCCccccccCChHHHHHHHhhhc
Q psy4688         132 NYKCHVCDKAYSCRKALKTHTLLHE  156 (388)
Q Consensus       132 ~~~C~~C~~~f~~~~~l~~H~~~h~  156 (388)
                      .|+|..|+..|-+...|..|+..|.
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhcc
Confidence            3555555555555555555554443

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.31  E-value=0.29  Score=24.67  Aligned_cols=22  Identities=27%  Similarity=0.782  Sum_probs=11.2

Q ss_pred             CccCCccccccCChHHHHHHHh
Q psy4688         132 NYKCHVCDKAYSCRKALKTHTL  153 (388)
Q Consensus       132 ~~~C~~C~~~f~~~~~l~~H~~  153 (388)
                      .|.|.+|.+.+...+++-+|..
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyv   29 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYV   29 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHH
T ss_pred             EEEeehhhHHHHHHHHHHHHHH
Confidence            3455555555555555555543