Psyllid ID: psy4703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
Protein Sequence
MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFDEFMEEVAKLEKEEAEMLETLYQDEKELADFYSLLSTLVNGSSSVGMRKKRGLQPYNLPWSKE
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHcHHHHcccHHHHHHHHccHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHcEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccEEEEEEEEEEEccccccccccccHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
midnnmndynklkesgnsafkqgdYETALDFYTKALKVTAEESHERATCLKNRAAVYLkqnqndkviEDCSksleivpddpkaLFRRCQAYEAIGKFEEAYtdakhihrveptnkaIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYvfdtsapmdkrVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKcetneeiylgeEDFITSIIKQGVDILKRLYMSKNENIRVRALVGLCklgsmggsdasirpfadgsTRKLAEACRRFlvnpardpdIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSvkyknvwngtqsDALKDVDKAFDEFMEEVAKLEKEEAEMLETLYQDEKELADFYSLLSTLVngsssvgmrkkrglqpynlpwske
Flexible Loop (DISEMBL)
MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSleivpddpkaLFRRCQAYEAIGKFEEAYTDAKHIHrveptnkaiqPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFlvnpardpdirRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVkyknvwngtqsdaLKDVDKAFDEFMEEVAKLEKEEAEMLETLYQDEKELADFYSLLSTLVngsssvgmrkkrglqpynlpwske
Low Complexity Region (SEG)
MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPalaalvdvassvKYKNVWNGTQSDALKDVDKAFDefmeevaklekeeaemleTLYQDEKELADFYSLLSTLVNGSSSVGMRKKRGLQPYNLPWSKE
Disordered region (IsUnstruct)
***********************DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFDEFMEEV*********MLETLYQDEKELADFYSLLSTLVN***********************
Disordered Region (DISOPRED)
******N****LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF********************************KRVTAVNNL**********************NTLLKCETNEEIYLGEEDFITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFDEFMEEVAKLE***********QDEKELADFYSLLSTLVNG***************N*P****
Disordered Region (DISEMBL)
MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFDEFMEEVAKLEKEEAEMLETLYQDEKELADFYSLLSTLVNGSSSVGMRKKRGLQPYNLPWSKE
Disordered Region (DISPRO)
*****MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFDEFMEEVAKLEKEEAEMLETLYQDEKELADFYSLLSTLVNGSSSVGMRKKRGLQPYNLPWS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxADFYSLLSTLVNGSSSVGMRKKRGLQPYNLPWSKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	401	2.2.26 [Sep-21-2011]
Q8CGY6	931	Protein unc-45 homolog B	yes	N/A	0.533	0.229	0.375	1e-30
Q6DGE9	934	Protein unc-45 homolog B	no	N/A	0.446	0.191	0.404	2e-29
D7REX8	927	Protein unc-45 homolog B	yes	N/A	0.423	0.183	0.409	2e-29
Q8IWX7	931	Protein unc-45 homolog B	yes	N/A	0.354	0.152	0.462	3e-29
Q68F64	927	Protein unc-45 homolog B	N/A	N/A	0.498	0.215	0.372	3e-28
Q99KD5	944	Protein unc-45 homolog A	no	N/A	0.356	0.151	0.470	7e-28
Q5RAP0	929	Protein unc-45 homolog A	yes	N/A	0.356	0.153	0.470	9e-28
Q32PZ3	944	Protein unc-45 homolog A	no	N/A	0.356	0.151	0.470	1e-27
Q9H3U1	944	Protein unc-45 homolog A	no	N/A	0.538	0.228	0.383	1e-27
Q99614	292	Tetratricopeptide repeat	no	N/A	0.321	0.441	0.345	8e-13

>sp|Q8CGY6|UN45B_MOUSE Protein unc-45 homolog B OS=Mus musculus GN=Unc45b PE=1 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 129/229 (56%), Gaps = 15/229 (6%)

Query: 156 MDKRVTAVNNL--VVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFI----- 208
           MDK V A+  +  ++      G ++L   GV + +  L   E   +  +  E  I     
Sbjct: 392 MDKNVNAIQTVSGILQGPFDLGNQLLGMKGVMEMMVALCGSEREADQLVAVEALIHASTK 451

Query: 209 ----TSIIKQGVDILKRLY-MSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLA 263
               T II  GV +LK++Y  +KNE I++R LVGLCKLGS GGSD  +R FA+GST KLA
Sbjct: 452 LSRATFIITNGVTLLKQIYKTTKNEKIKIRTLVGLCKLGSAGGSDYGLRQFAEGSTEKLA 511

Query: 264 EACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVW 323
           + CR++L N A D   RRWA EGLAYLTLDA+VK+  ++D PAL A+ ++A +       
Sbjct: 512 KQCRKWLCNTAIDTRTRRWAVEGLAYLTLDADVKDDFVQDIPALQAMFELAKARTSDKTI 571

Query: 324 NGTQSDALKDVDKAFD--EFMEEVAKLEK-EEAEMLETLYQDEKELADF 369
             + ++ L +   ++D  E + E+ +L K  +  + E   +D+K+  D 
Sbjct: 572 LYSVANTLVNCTNSYDVKEVVPELVQLAKFSKQHVPEEHPKDKKDFVDL 620

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain. Plays a role in sarcomere formation during muscle cell development.
Mus musculus (taxid: 10090)

>sp|Q6DGE9|UN45B_DANRE Protein unc-45 homolog B OS=Danio rerio GN=unc45b PE=1 SV=2

 Score =  130 bits (328), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 19/198 (9%)

Query: 134 ENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLV-----------VLAREMSGAEMLLK- 181
           E +Q ++   +  K  FD +  MDK + A+N L            VLA      EM++  
Sbjct: 375 ERDQFRDICDDYIKSKFDPN-DMDKNIHAINTLSGILQGPFDLGNVLAGRQGVMEMMVAL 433

Query: 182 SGVAKQINTLLKCET--NEEIYLGEEDFITSIIKQGVDILKRLYM-SKNENIRVRALVGL 238
            G  ++++ L+  E   +      +  F    I  GV +LK +Y  +KNE I++RALVGL
Sbjct: 434 CGSEREVDQLVAVEALIHASTKTSKASFF---ISNGVSLLKEMYKKTKNEKIKIRALVGL 490

Query: 239 CKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKE 298
           CKLGS GG D S+R FA+GST KLA+ CR++L NP  D   R+WA EGLAYLT DA+VK+
Sbjct: 491 CKLGSAGGDDYSMRQFAEGSTEKLAKQCRKWLCNPTLDVRTRKWAIEGLAYLTNDADVKD 550

Query: 299 ALIEDKPALAALVDVASS 316
              ED+PA+ A+ ++  S
Sbjct: 551 DFAEDEPAMRAMFELTKS 568

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain (By similarity). Plays a role in sarcomere formation during muscle cell development. Required for myoseptal integrity, myofiber attachment, motility and craniofacial development.

Danio rerio (taxid: 7955)

>sp|D7REX8|UN45B_XENTR Protein unc-45 homolog B OS=Xenopus tropicalis GN=unc45b PE=1 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/188 (40%), Positives = 112/188 (59%), Gaps = 18/188 (9%)

Query: 211 IIKQGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 269
           II  GV +LK +Y  +KNE I++RALVGLCKLGS GG+D ++R FA+GST KLA+ CR++
Sbjct: 455 IITNGVSLLKDIYKKTKNEKIKIRALVGLCKLGSAGGTDYALRQFAEGSTDKLAKQCRKW 514

Query: 270 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVA----SSVKYKNVWNG 325
           L NP+ D   R+WA EGLAYLTLDA+VK+  +ED+ +L A+ +++     ++ Y      
Sbjct: 515 LCNPSLDIQTRKWAVEGLAYLTLDADVKDEFVEDEQSLKAMFELSKTSDKTILYSVATTL 574

Query: 326 TQSDALKDVDKAFDEFMEEVAKLEKEEAEMLETLYQDEKEL----------ADFYSLLST 375
                  DV +   E M ++AK  K+     E   +D+K+           AD  S LS 
Sbjct: 575 VNCTNSYDVKEVIPE-MVQLAKFSKQHVP--EQHPKDKKDFVEKRVKRLLKADVISALSC 631

Query: 376 LVNGSSSV 383
           +V   +S+
Sbjct: 632 MVKADNSI 639

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain (By similarity). Plays a role in sarcomere formation during muscle cell development.

Xenopus tropicalis (taxid: 8364)

>sp|Q8IWX7|UN45B_HUMAN Protein unc-45 homolog B OS=Homo sapiens GN=UNC45B PE=2 SV=1

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 96/145 (66%), Gaps = 3/145 (2%)

Query: 209 TSIIKQGVDILKRLY-MSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACR 267
           T II  GV +LK++Y  +KNE I++R LVGLCKLGS GG+D  +R FA+GST KLA+ CR
Sbjct: 456 TFIITNGVSLLKQIYKTTKNEKIKIRTLVGLCKLGSAGGTDYGLRQFAEGSTEKLAKQCR 515

Query: 268 RFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQ 327
           ++L N + D   RRWA EGLAYLTLDA+VK+  ++D PAL A+ ++A +         + 
Sbjct: 516 KWLCNMSIDTRTRRWAVEGLAYLTLDADVKDDFVQDVPALQAMFELAKAGTSDKTILYSV 575

Query: 328 SDALKDVDKAFD--EFMEEVAKLEK 350
           +  L +   ++D  E + E+ +L K
Sbjct: 576 ATTLVNCTNSYDVKEVIPELVQLAK 600

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain. Plays a role in sarcomere formation during muscle cell development.

Homo sapiens (taxid: 9606)

>sp|Q68F64|UN45B_XENLA Protein unc-45 homolog B OS=Xenopus laevis GN=unc45b PE=2 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 124/223 (55%), Gaps = 23/223 (10%)

Query: 178 MLLKSGVAKQINTLLKCET--NEEIYLGEEDFITSIIKQGVDILKRLYM-SKNENIRVRA 234
           M+  +G  K+++ L+  E   +    L    FI   I  GV +LK +Y  +KNE I++RA
Sbjct: 423 MVALTGSEKEVDQLVAVEALIHASTKLSRASFI---ITNGVSLLKDIYKKTKNEKIKIRA 479

Query: 235 LVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDA 294
           LVGLCKLGS GG+D ++R FA+GST KLA+ CR++L N + D   R+WA EGLAYLTLDA
Sbjct: 480 LVGLCKLGSAGGTDYALRQFAEGSTDKLAKQCRKWLCNTSLDIQTRKWAVEGLAYLTLDA 539

Query: 295 EVKEALIEDKPALAALVDVA----SSVKYKNVWNGTQSDALKDVDKAFDEFMEEVAKLEK 350
           +VK+  +ED+ +L A+ ++      ++ Y             DV +   E M ++AK  K
Sbjct: 540 DVKDEFVEDEQSLKAMFELCKTSDKTILYSVATTLVNCTNSYDVKEVIPE-MVQLAKFSK 598

Query: 351 EEAEMLETLYQDEKEL----------ADFYSLLSTLVNGSSSV 383
           +     E   +D+K+           AD  S LS +V   +S+
Sbjct: 599 QHVP--EQHPKDKKDFVLKRVKKLLQADVISALSCMVKADNSI 639

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain. Plays a role in sarcomere formation during muscle cell assembly.

Xenopus laevis (taxid: 8355)

>sp|Q99KD5|UN45A_MOUSE Protein unc-45 homolog A OS=Mus musculus GN=Unc45a PE=1 SV=2

 Score =  125 bits (313), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 94/153 (61%), Gaps = 10/153 (6%)

Query: 174 SGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITS---------IIKQGVDILKRLYM 224
           +G   L  SGV + +  L   E  EE  +  E  I +         I   GV +LK LY 
Sbjct: 428 AGNRALELSGVMESVIALCASEREEEQLVAVEALIHAAGKAKRASFITANGVSLLKDLYK 487

Query: 225 -SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWA 283
            S+ ++IR+RALVGLCKLGS GG+D S++ FA+GST KLA+ CR++L N   D   RRWA
Sbjct: 488 GSERDSIRIRALVGLCKLGSAGGTDFSMKQFAEGSTLKLAKQCRKWLCNDQIDAGTRRWA 547

Query: 284 AEGLAYLTLDAEVKEALIEDKPALAALVDVASS 316
            EGLAYLT DA+VKE  +ED+ AL AL  ++ S
Sbjct: 548 VEGLAYLTFDADVKEEFVEDEAALKALFQLSRS 580

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Mus musculus (taxid: 10090)

>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1

 Score =  124 bits (312), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 93/153 (60%), Gaps = 10/153 (6%)

Query: 174 SGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITS---------IIKQGVDILKRLY- 223
           +G   L  SGV + +  L   E  EE  +  E  I +         I   GV +LK LY 
Sbjct: 413 AGNRALELSGVMEGVIALCASEQEEEQLVAVEALIHAAGKAKRASFITANGVSLLKDLYK 472

Query: 224 MSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWA 283
            S+ ++IR+RALVGLCKLGS GG+D S++ FA+GST KLA+ CR++L N   D   RRWA
Sbjct: 473 RSEKDSIRIRALVGLCKLGSAGGTDFSMKQFAEGSTLKLAKQCRKWLCNDQIDAGTRRWA 532

Query: 284 AEGLAYLTLDAEVKEALIEDKPALAALVDVASS 316
            EGLAYLT DA+VKE  +ED  AL AL  ++ S
Sbjct: 533 VEGLAYLTFDADVKEEFVEDAAALKALFQLSRS 565

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Pongo abelii (taxid: 9601)

>sp|Q32PZ3|UN45A_RAT Protein unc-45 homolog A OS=Rattus norvegicus GN=Unc45a PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 94/153 (61%), Gaps = 10/153 (6%)

Query: 174 SGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITS---------IIKQGVDILKRLYM 224
           +G   L  SGV + +  L   E  EE  +  E  I +         I   GV +LK LY 
Sbjct: 428 AGNRALELSGVMESVIALCASEQEEEQLVAVEALIHAAGKAKRASFITANGVALLKDLYK 487

Query: 225 -SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWA 283
            S+ ++IR+RALVGLCKLGS GG+D S++ FA+GST KLA+ CR++L N   D   RRWA
Sbjct: 488 GSERDSIRIRALVGLCKLGSAGGTDFSMKQFAEGSTLKLAKQCRKWLCNDQIDAGTRRWA 547

Query: 284 AEGLAYLTLDAEVKEALIEDKPALAALVDVASS 316
            EGLAYLT DA+VKE  +ED+ AL AL  ++ S
Sbjct: 548 VEGLAYLTFDADVKEEFVEDEAALKALFQLSRS 580

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Rattus norvegicus (taxid: 10116)

>sp|Q9H3U1|UN45A_HUMAN Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A PE=1 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 126/232 (54%), Gaps = 16/232 (6%)

Query: 120 VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREM--SGAE 177
           +LS+LF  + K   E E       N  K  F+    +  ++ A+  +  L +    +G  
Sbjct: 374 LLSKLFDDL-KCDAERENFHRLCENYIKSWFEGQG-LAGKLRAIQTVSCLLQGPCDAGNR 431

Query: 178 MLLKSGVAKQINTLLKCETNEEIYLGEEDFITS---------IIKQGVDILKRLY-MSKN 227
            L  SGV + +  L   E  EE  +  E  I +         I   GV +LK LY  S+ 
Sbjct: 432 ALELSGVMESVIALCASEQEEEQLVAVEALIHAAGKAKRASFITANGVSLLKDLYKCSEK 491

Query: 228 ENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGL 287
           ++IR+RALVGLCKLGS GG+D S++ FA+GST KLA+ CR++L N   D   RRWA EGL
Sbjct: 492 DSIRIRALVGLCKLGSAGGTDFSMKQFAEGSTLKLAKQCRKWLCNDQIDAGTRRWAVEGL 551

Query: 288 AYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD 339
           AYLT DA+VKE  +ED  AL AL  + S ++ ++V     S AL +   ++D
Sbjct: 552 AYLTFDADVKEEFVEDAAALKALFQL-SRLEERSVLFAVAS-ALVNCTNSYD 601

Acts as co-chaperone for HSP90. Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell. May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Homo sapiens (taxid: 9606)

>sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIED 69
           +LKE GN  FK+GDY  A   Y++AL++       ER+    NRAA  +KQ++ +  I D
Sbjct: 118 RLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEMAIND 177

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
           CSK++++ P   +A+ RR + YE   K +EA  D K I   +P+    +    RL   + 
Sbjct: 178 CSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIE 237

Query: 130 KRMQENEQLQNKV 142
           +R   NE+L+ ++
Sbjct: 238 ER---NERLKEEM 247

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
91084547	923	PREDICTED: similar to AGAP003727-PA [Tri	0.516	0.224	0.502	7e-51
380027387	941	PREDICTED: protein unc-45 homolog B-like	0.523	0.223	0.467	3e-47
345492367	946	PREDICTED: protein unc-45 homolog B-like	0.483	0.205	0.468	3e-47
193690802	929	PREDICTED: protein unc-45 homolog A-like	0.476	0.205	0.510	5e-47
350424382	940	PREDICTED: protein unc-45 homolog B-like	0.483	0.206	0.468	2e-45
340722717	940	PREDICTED: LOW QUALITY PROTEIN: protein	0.483	0.206	0.468	2e-45
157127851	448	heat shock protein 70 (hsp70)-interactin	0.538	0.482	0.457	2e-45
383850080	940	PREDICTED: protein unc-45 homolog B-like	0.461	0.196	0.491	1e-44
183979249	943	similar to CG2708-PA [Papilio xuthus]	0.511	0.217	0.492	2e-44
48105896	942	PREDICTED: protein unc-45 homolog A [Api	0.461	0.196	0.486	4e-44

>gi|91084547|ref|XP_973113.1| PREDICTED: similar to AGAP003727-PA [Tribolium castaneum] gi|270009248|gb|EFA05696.1| translocase of outer membrane 34 [Tribolium castaneum]

 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 104/207 (50%), Positives = 141/207 (68%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           K KE GN+AFK G++++A   YTKA+ +   ES + +  LKNRAA YLK  + ++ + DC
Sbjct: 8   KYKEEGNAAFKSGNWDSAAKLYTKAINLETSESRDLSVFLKNRAAAYLKLGKFEEALSDC 67

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
            +SLEIVP DPKALFRRCQA EA+ +FEEAY DA  I + +P N+ IQPVL RL+ IV +
Sbjct: 68  DRSLEIVPRDPKALFRRCQALEALERFEEAYRDATQIFKDDPNNRTIQPVLERLYRIVQE 127

Query: 131 RMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINT 190
           R++EN Q   K+ +M K  FD +A  +KR TA+NNL+VLARE +G+ +++KS V +QI  
Sbjct: 128 RVKENAQTSTKIESMTKLAFDLAADREKRETAMNNLLVLARENAGSSLMIKSPVVQQIKK 187

Query: 191 LLKCETNEEIYLGEEDFITSIIKQGVD 217
           LLK E N EI +     I  + K  VD
Sbjct: 188 LLKVEKNREICVTGIRIIGELCKHNVD 214

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027387|ref|XP_003697407.1| PREDICTED: protein unc-45 homolog B-like [Apis florea]

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/214 (46%), Positives = 141/214 (65%), Gaps = 4/214 (1%)

Query: 13  KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           KE GN  F +G++  AL  YT ALK+  +++ E+AT  KNRAA YLKQ + +K I+DC +
Sbjct: 13  KEKGNIEFNKGNWSEALSCYTSALKLADKDNSEKATYYKNRAATYLKQEEYNKAIKDCDE 72

Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132
           +L+I P+DPKALFRRCQA E++ +FEEAY DA++I   +PTNK IQP+ +RL  IV +R 
Sbjct: 73  ALKICPNDPKALFRRCQALESLERFEEAYRDARYIISADPTNKTIQPIAARLHEIVQERY 132

Query: 133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLL 192
           ++N ++  KV  M    F+     +KR TA+NNL+VLARE +GAE++   G+  +I  +L
Sbjct: 133 RQNSRVSAKVSQMMDIAFEMKENNEKRETAMNNLLVLARERAGAEVMFNDGIISKITKML 192

Query: 193 KCETNEEIYLGEEDFITSIIKQGV----DILKRL 222
           K E NEEI       IT + K  +    DILK +
Sbjct: 193 KLEKNEEIITVAIRIITELCKDNINRTKDILKHI 226

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492367|ref|XP_001600626.2| PREDICTED: protein unc-45 homolog B-like [Nasonia vitripennis]

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/205 (46%), Positives = 141/205 (68%)

Query: 13  KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           KE GN  FK G  + AL  YT ALK+T +++ ++A  LKNRAAVYLKQ +  KVI+DC +
Sbjct: 12  KEKGNEEFKNGFLDKALSCYTNALKLTKDDNFDKAVYLKNRAAVYLKQKEYKKVIKDCDE 71

Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132
           +L+I  +DPKALFRRCQA EA+ +FEEAY DA+ +   +P+NKAIQP+ +RL  I  +R+
Sbjct: 72  ALKISSNDPKALFRRCQALEALERFEEAYRDARGVITTDPSNKAIQPIAARLHEICQERL 131

Query: 133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLL 192
           +EN ++  KV  MF+  FD +   +KR +A+NNL+VL +E +GA+++ K G+A +I+ LL
Sbjct: 132 RENSKVSAKVSQMFELAFDFAVDKEKRESAMNNLLVLTKEKAGADLMFKQGIATKIHKLL 191

Query: 193 KCETNEEIYLGEEDFITSIIKQGVD 217
           K E NE I +     +  + K  ++
Sbjct: 192 KTEKNEGIIVAAIRILAELCKDNIE 216

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193690802|ref|XP_001942781.1| PREDICTED: protein unc-45 homolog A-like [Acyrthosiphon pisum]

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 131/192 (68%), Gaps = 1/192 (0%)

Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
           LKE GN AFK G++  AL +YT AL +  E   +++   KNRAAVY+K  + +  I DCS
Sbjct: 12  LKEKGNVAFKDGNWLKALQYYTSALDLLKENIRDKSILYKNRAAVYIKLGEFENAIRDCS 71

Query: 72  KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131
            SL+IV +DPKALFRRC AYE +GK+EEAY D K     +P NK IQPVLSRL  IV ++
Sbjct: 72  ASLDIVANDPKALFRRCCAYEELGKYEEAYIDGKQCLSSDPLNKEIQPVLSRLHPIVQEK 131

Query: 132 MQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLARE-MSGAEMLLKSGVAKQINT 190
           ++EN QL NK+ +MFKY F     ++KR TA+ NL+VL++E  SG+  LLKSG+  +I  
Sbjct: 132 VRENAQLSNKIESMFKYAFKIEESLEKRTTAIKNLLVLSKESSSGSAGLLKSGIVSKIKG 191

Query: 191 LLKCETNEEIYL 202
           LLK + N E+ +
Sbjct: 192 LLKNDQNAEVRI 203

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424382|ref|XP_003493777.1| PREDICTED: protein unc-45 homolog B-like [Bombus impatiens]

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/205 (46%), Positives = 136/205 (66%)

Query: 13  KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           KE GN  F +G++  AL  YT ALK+T E++ E+A   KNRAA YLKQ + +K IEDC +
Sbjct: 13  KEEGNVEFNKGNWSEALSCYTNALKLTNEDNSEKAIYYKNRAATYLKQEEYNKAIEDCDE 72

Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132
           +L+I P+DPKALFRRCQA EA+ ++EEAY DA++I   +P NKAIQP+ ++L  IV +R 
Sbjct: 73  ALKISPNDPKALFRRCQALEALERYEEAYRDARYIISADPGNKAIQPIAAKLHEIVQERY 132

Query: 133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLL 192
           ++N ++  KV  M    F+     +KR TA+NNL+VLARE +GAE++   GV  +I  +L
Sbjct: 133 RQNSRVSVKVSQMIDIAFEIKGDSEKRETAMNNLLVLARERAGAEIMFNDGVISKIIKML 192

Query: 193 KCETNEEIYLGEEDFITSIIKQGVD 217
           K E +EEI       I  + K  ++
Sbjct: 193 KLEKSEEIITIGVRIIAELCKDNIN 217

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722717|ref|XP_003399749.1| PREDICTED: LOW QUALITY PROTEIN: protein unc-45 homolog B-like [Bombus terrestris]

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/205 (46%), Positives = 136/205 (66%)

Query: 13  KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           KE GN  F +G++  AL  YT ALK+T E++ E+A   KNRAA YLKQ + +K IEDC +
Sbjct: 13  KEEGNVEFNKGNWSEALSCYTNALKLTNEDNSEKAIYYKNRAATYLKQEEYNKAIEDCDE 72

Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132
           +L+I P+DPKALFRRCQA EA+ ++EEAY DA++I   +P NKAIQP+ ++L  IV +R 
Sbjct: 73  ALKISPNDPKALFRRCQALEALERYEEAYRDARYIISADPGNKAIQPIAAKLHEIVQERY 132

Query: 133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLL 192
           ++N ++  KV  M    F+     +KR TA+NNL+VLARE +GAE++   GV  +I  +L
Sbjct: 133 RQNSRVSVKVSQMIDIAFEIKGDSEKRETAMNNLLVLARERAGAEIMFNDGVISKIIKML 192

Query: 193 KCETNEEIYLGEEDFITSIIKQGVD 217
           K E +EEI       I  + K  ++
Sbjct: 193 KLEKSEEIITIGVRIIAELCKDNIN 217

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127851|ref|XP_001661211.1| heat shock protein 70 (hsp70)-interacting protein [Aedes aegypti] gi|108872793|gb|EAT37018.1| AAEL010948-PA [Aedes aegypti]

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/221 (45%), Positives = 142/221 (64%), Gaps = 5/221 (2%)

Query: 1   MIDNNMN----DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAV 56
           M+++N      D N  KE GN  FK G +++A+ +Y+KA+ +  E+  +     KNRAA 
Sbjct: 1   MVNDNTQKPQEDPNACKERGNEEFKNGYWDSAVTWYSKAIAL-GEKHKDLPVYYKNRAAA 59

Query: 57  YLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
           YLK  + ++  EDCSKSL+  P+DPKALFRR QAYEA+ +FEEAY D + IH  +P NK 
Sbjct: 60  YLKLEKFEQAAEDCSKSLDQCPNDPKALFRRFQAYEALQRFEEAYKDLRTIHTYDPNNKM 119

Query: 117 IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGA 176
           I+P L RL AIV +R ++  Q  NKV  MF+  FD +AP +KR  A+NN+VVLARE +GA
Sbjct: 120 IKPHLERLHAIVQERARDRAQTTNKVTKMFEIAFDLAAPKEKREQAMNNIVVLARESAGA 179

Query: 177 EMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVD 217
           E++LK G+  +I  LLK E N +I +     I  +  + V+
Sbjct: 180 EVMLKDGLVTRIGKLLKVEKNNDIIINAVRAIDEVCTKSVE 220

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850080|ref|XP_003700645.1| PREDICTED: protein unc-45 homolog B-like [Megachile rotundata]

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 129/185 (69%)

Query: 13  KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           KE GN+ F +G++  AL  YT ALK+T EE+ E+A   KNRAA YLKQ + +K I+DC +
Sbjct: 13  KEKGNAEFNKGNWAEALSCYTNALKLTNEENSEKAIYYKNRAAAYLKQAEYNKAIKDCDE 72

Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132
           +L+I P+DPKALFRRCQA +A+ ++EEAY DA++I   +P NKAIQP+ +RL  IV +R 
Sbjct: 73  ALKICPNDPKALFRRCQALDALERYEEAYRDARYIISADPGNKAIQPIAARLHEIVQERY 132

Query: 133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLL 192
           ++N ++  KV  M    F+     +KR TA+NNL+VLARE +GAE++   G+  +I  +L
Sbjct: 133 RQNSRVSAKVSQMMDIAFEMKGDNEKRETAMNNLLVLARERAGAEVMFSDGIVSKIIKML 192

Query: 193 KCETN 197
           K E N
Sbjct: 193 KLEKN 197

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|183979249|dbj|BAG30786.1| similar to CG2708-PA [Papilio xuthus]

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 134/205 (65%)

Query: 13  KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           K  GN AFK  +YE A+  YTKA+ ++ ++S +RAT LKNRAA YLK  +  KVI    +
Sbjct: 12  KNKGNEAFKSENYEEAVSLYTKAINLSEKDSRDRATFLKNRAAAYLKLKEYKKVINTHYR 71

Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132
           +       PKALFRR QA E+  +FEEAY DAK I  V+P NKAIQPVLSRL AIV +R+
Sbjct: 72  ARAAARAGPKALFRRAQALESEERFEEAYRDAKTIFTVDPANKAIQPVLSRLHAIVQERV 131

Query: 133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLL 192
           + N Q  NKV  MFK  F+ S   DKR  A+ NLVVLA+E + A++++K+GV ++I  LL
Sbjct: 132 RRNAQTSNKVEQMFKLAFEISEEKDKRQKAMTNLVVLAKETAAADVMVKNGVVQKIQQLL 191

Query: 193 KCETNEEIYLGEEDFITSIIKQGVD 217
           K E N +IY+     I  + K+ V+
Sbjct: 192 KVEKNPDIYINAIRVIGQLCKRNVE 216

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48105896|ref|XP_396019.1| PREDICTED: protein unc-45 homolog A [Apis mellifera]

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/185 (48%), Positives = 127/185 (68%)

Query: 13  KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           KE GN  F +G++  AL  YT ALK+  +++ E+AT  KNRAA YLKQ + +K I+DC +
Sbjct: 13  KEKGNIEFNKGNWSEALTCYTSALKLADKDNSEKATYYKNRAATYLKQEEYNKAIKDCDE 72

Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132
           +L+I P+DPKALFRRCQA EA+ +FEEAY DA++I   +P NK IQP+ +RL  IV +R 
Sbjct: 73  ALKICPNDPKALFRRCQALEALERFEEAYRDARYIISADPANKTIQPIAARLHEIVQERY 132

Query: 133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLL 192
           ++N ++  KV  M    F+     +KR TA+NNL+VLARE +GAE++   G+  +I  +L
Sbjct: 133 RQNSRVSAKVSQMMDIAFEMKENNEKRETAMNNLLVLARERAGAEIMFNDGIVSKITKIL 192

Query: 193 KCETN 197
           K E N
Sbjct: 193 KLEKN 197

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
UNIPROTKB|F1P0Z6	839	F1P0Z6 "Uncharacterized protei	0.451	0.215	0.387	1.2e-53
UNIPROTKB|F1NXC5	953	UNC45B "Uncharacterized protei	0.324	0.136	0.477	1.4e-52
FB|FBgn0010812	947	unc-45 [Drosophila melanogaste	0.533	0.225	0.423	2.1e-42
ZFIN|ZDB-GENE-050417-158	935	unc45a "unc-45 homolog A (C. e	0.481	0.206	0.405	1.1e-31
MGI|MGI:2443377	931	Unc45b "unc-45 homolog B (C. e	0.386	0.166	0.446	1.1e-28
RGD|1305666	735	Unc45b "unc-45 homolog B (C. e	0.386	0.210	0.446	1.4e-28
ZFIN|ZDB-GENE-020919-3	934	unc45b "unc-45 homolog B (C. e	0.618	0.265	0.329	1.5e-28
UNIPROTKB|F1S166	929	UNC45B "Uncharacterized protei	0.386	0.166	0.446	2.8e-28
UNIPROTKB|Q8IWX7	931	UNC45B "Protein unc-45 homolog	0.448	0.193	0.373	1.2e-26
UNIPROTKB|F1PUV3	943	UNC45B "Uncharacterized protei	0.433	0.184	0.380	9.2e-26

UNIPROTKB|F1P0Z6 F1P0Z6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 301 (111.0 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
 Identities = 71/183 (38%), Positives = 105/183 (57%)

Query:    11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
             +L+E GN+ F+ GD+  AL  YT+AL +   E  ERA   +NRAA YLK     K   D 
Sbjct:    13 QLRERGNALFQAGDHAAALAAYTQALSLCQAEP-ERAVLHRNRAACYLKLEDYAKAEADA 71

Query:    71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
             SK++E    D KALFRR QA + +G+ ++A +D +    +EP NKA Q  L  L + + +
Sbjct:    72 SKAIEADGRDMKALFRRSQALQKLGRLDQAVSDLQRCVSLEPKNKAFQEALRTLGSSMHE 131

Query:   131 RMQENEQLQNKVHNMFKYVFDTSAP-MDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQIN 189
             +M+      +KV  MF+ + D     +DK+  A  NL+VLARE +GAE + +S   + + 
Sbjct:   132 KMKTMSCTDSKVEQMFQILLDPQEKDVDKKQKAAQNLIVLAREEAGAEKIFQSDGVRLLT 191

Query:   190 TLL 192
              LL
Sbjct:   192 QLL 194

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

UNIPROTKB|F1NXC5 UNC45B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 294 (108.6 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 65/136 (47%), Positives = 90/136 (66%)

Query:   173 MSGA-EMLLK-SGVAKQINTLLKCETNEEIYLGEE-DFITSIIKQGVDILKRLYM-SKNE 228
             M G  EM++   G  ++I+ L+  E    I+   +    T II  G+ +LK +Y  +KNE
Sbjct:   441 MKGVMEMMVALCGSEREIDQLVAVEAL--IHASTKLSRATFIISNGITLLKEIYKKTKNE 498

Query:   229 NIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA 288
              I++RALVGLCKLGS GG+D  +R FA+GST KLA  CR++L N + D   R+WA EGLA
Sbjct:   499 KIKIRALVGLCKLGSAGGTDYGLRQFAEGSTEKLARQCRKWLCNTSIDARTRKWAVEGLA 558

Query:   289 YLTLDAEVKEALIEDK 304
             YLTLDA+VK+  +ED+
Sbjct:   559 YLTLDADVKDDFVEDE 574

GO:0005829 "cytosol" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

FB|FBgn0010812 unc-45 [Drosophila melanogaster (taxid:7227)]

 Score = 458 (166.3 bits), Expect = 2.1e-42, P = 2.1e-42
 Identities = 91/215 (42%), Positives = 132/215 (61%)

Query:     6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
             ++D    K+ GN AFK   +E A++ Y KA+K  ++   E A   KNRAA YLK  + + 
Sbjct:    10 VSDAGSYKDKGNEAFKASRWEEAVEHYGKAIKAGSKHK-ELAVFYKNRAAAYLKLGKYEN 68

Query:    66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125
              +EDC++SL+  P DPKALFRR QAYEA+ KFEEAY DA  + + +P NK +QP+L RL 
Sbjct:    69 AVEDCTESLKAAPGDPKALFRRAQAYEALEKFEEAYKDATALFKADPGNKTVQPMLQRLH 128

Query:   126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVA 185
              +V +R   N +   KV  M    FD + P+DKR  A NNLVVLA+E +GAE+L K    
Sbjct:   129 VVVEERSARNAKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCI 188

Query:   186 KQINTLLKCETNEEIYLGEEDFITSIIKQGVDILK 220
              ++ +L K E +++IY+     + ++ +  V+  K
Sbjct:   189 AKVASLTKVEKDQDIYVNMVHLVAALCENSVERTK 223

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0034605 "cellular response to heat" evidence=IDA

GO:0007525 "somatic muscle development" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

ZFIN|ZDB-GENE-050417-158 unc45a "unc-45 homolog A (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 358 (131.1 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 79/195 (40%), Positives = 119/195 (61%)

Query:     8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVI 67
             D + L+E GN+ FK GD + AL  YTKALK++   S E A   +NR+A YLK     K  
Sbjct:     4 DSSALREEGNNHFKAGDVQQALTCYTKALKISDCPS-ESAVLYRNRSACYLKLEDYTKAE 62

Query:    68 EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127
             ED +KSL++ P D KA FRR QA + +G+ ++A+ D +   ++EP NKA Q +L +L A 
Sbjct:    63 EDATKSLDVDPGDIKARFRRAQALQKLGRLDQAFMDVQKCAQLEPKNKAFQDLLRQLGAQ 122

Query:   128 VTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQ 187
             + ++  +     ++V  MFK + D+SAP+  R  A  NLVVL+RE +GAE + ++   K 
Sbjct:   123 IQQKATQLSSTDSRVQQMFKLLLDSSAPIADRQKAAQNLVVLSREDAGAEQIFRNDGVKL 182

Query:   188 INTLLKCETNEEIYL 202
             +  LL+ +  EE+ L
Sbjct:   183 LQNLLESK-QEELIL 196

GO:0005575 "cellular_component" evidence=ND

GO:0008015 "blood circulation" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0048514 "blood vessel morphogenesis" evidence=IMP

GO:0051216 "cartilage development" evidence=IMP

MGI|MGI:2443377 Unc45b "unc-45 homolog B (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 309 (113.8 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
 Identities = 75/168 (44%), Positives = 99/168 (58%)

Query:   150 FDTSAPMDKRVTAVNNLV-VLAREMS-GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207
             FD    MDK V A+  +  +L      G ++L   GV + +  L   E   +  +  E  
Sbjct:   387 FDPQ-DMDKNVNAIQTVSGILQGPFDLGNQLLGMKGVMEMMVALCGSEREADQLVAVEAL 445

Query:   208 I---------TSIIKQGVDILKRLYMS-KNENIRVRALVGLCKLGSMGGSDASIRPFADG 257
             I         T II  GV +LK++Y + KNE I++R LVGLCKLGS GGSD  +R FA+G
Sbjct:   446 IHASTKLSRATFIITNGVTLLKQIYKTTKNEKIKIRTLVGLCKLGSAGGSDYGLRQFAEG 505

Query:   258 STRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKP 305
             ST KLA+ CR++L N A D   RRWA EGLAYLTLDA+VK+  ++D P
Sbjct:   506 STEKLAKQCRKWLCNTAIDTRTRRWAVEGLAYLTLDADVKDDFVQDIP 553

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

RGD|1305666 Unc45b "unc-45 homolog B (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 309 (113.8 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
 Identities = 75/168 (44%), Positives = 99/168 (58%)

Query:   150 FDTSAPMDKRVTAVNNLV-VLAREMS-GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207
             FD    MDK V A+  +  +L      G ++L   GV + +  L   E   +  +  E  
Sbjct:   190 FDPQ-DMDKNVNAIQTVSGILQGPFDLGNQLLGMKGVMEMMVALCGSEREADQLVAVEAL 248

Query:   208 I---------TSIIKQGVDILKRLYMS-KNENIRVRALVGLCKLGSMGGSDASIRPFADG 257
             I         T II  GV +LK++Y + KNE I++R LVGLCKLGS GGSD  +R FA+G
Sbjct:   249 IHASTKLSRATFIITNGVTLLKQIYKTTKNEKIKIRTLVGLCKLGSAGGSDYGLRQFAEG 308

Query:   258 STRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKP 305
             ST KLA+ CR++L N A D   RRWA EGLAYLTLDA+VK+  ++D P
Sbjct:   309 STEKLAKQCRKWLCNTAIDTRTRRWAVEGLAYLTLDADVKDDFVQDIP 356

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0051879 "Hsp90 protein binding" evidence=IEA;ISO

GO:0061077 "chaperone-mediated protein folding" evidence=IEA;ISO

ZFIN|ZDB-GENE-020919-3 unc45b "unc-45 homolog B (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 329 (120.9 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 86/261 (32%), Positives = 134/261 (51%)

Query:     1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER-ATCLKNRAAVYLK 59
             M    + D  +LKE GN  F+ G+ + A+D YTKA+K   +E  +  A   +NR+A +LK
Sbjct:     1 MTMGEIGDSVQLKEEGNKHFQAGEIDQAIDCYTKAIKTCKKEDKKALAVIYRNRSACFLK 60

Query:    60 QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
             +        D +K++++   D KAL+RRCQA+E +GK + A+ D +    +EP NK    
Sbjct:    61 KENYSNAASDATKAIDVDAADIKALYRRCQAFEKLGKLDMAFKDVQRCATIEPKNKTFLE 120

Query:   120 VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179
              L RL A + ++++      ++V NMF  +F      +KR  A NNL+VLARE +GAE +
Sbjct:   121 TLRRLGAEIQQKLKTTFSTDSRVQNMFDILFSDEPDKEKREKAANNLIVLAREDAGAERI 180

Query:   180 LKS-GVA---KQINT------LLKCETNEEIYLGEEDFITSIIKQ-GVDILKRLYMSKNE 228
              ++ GV    + I+T      L    T   +  G     T+II   G+  L  +    NE
Sbjct:   181 FQNNGVPLLMQLIDTGKPEMILAAIRTLSGMCTGHRARATAIIHSVGISKLCSIMAVDNE 240

Query:   229 NIRVR-ALVGLCKLGSMGGSD 248
              I +  A +  C   S+ G D
Sbjct:   241 EIALATANLFQCVNDSLSGGD 261

GO:0005515 "protein binding" evidence=IPI

GO:0030239 "myofibril assembly" evidence=IMP

GO:0060538 "skeletal muscle organ development" evidence=IMP

GO:0030018 "Z disc" evidence=IDA

GO:0048738 "cardiac muscle tissue development" evidence=IMP

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|F1S166 UNC45B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 306 (112.8 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
 Identities = 75/168 (44%), Positives = 98/168 (58%)

Query:   150 FDTSAPMDKRVTAVNNLV-VLAREMS-GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207
             FD    MDK V A+  +  +L      G ++L   GV + +  L   E   +  +  E  
Sbjct:   387 FDPQ-DMDKNVIAIQTVSGILQGPFDLGNQLLSLKGVMEMMVALCGSERETDQLVAVEAL 445

Query:   208 I---------TSIIKQGVDILKRLYMS-KNENIRVRALVGLCKLGSMGGSDASIRPFADG 257
             I         T II  GV +LK LY + KNE I++R LVGLCKLGS GG+D  +R FA+G
Sbjct:   446 IHASTKLSRATFIITNGVALLKELYKTTKNEKIKIRTLVGLCKLGSAGGTDYGLRQFAEG 505

Query:   258 STRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKP 305
             ST KLA+ CR++L N A D   RRWA EGLAYLTLDA+VK+  ++D P
Sbjct:   506 STEKLAKQCRKWLCNAAIDTRTRRWAVEGLAYLTLDADVKDDFVQDIP 553

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|Q8IWX7 UNC45B "Protein unc-45 homolog B" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 68/182 (37%), Positives = 110/182 (60%)

Query:    11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
             +LKE GN  F+  DY+ A + Y++ALK+T +++   AT  +NRAA  LK     +   D 
Sbjct:     8 QLKEEGNRHFQLQDYKAATNSYSQALKLTKDKAL-LATLYRNRAACGLKTESYVQAASDA 66

Query:    71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
             S++++I   D KAL+RRCQA E +GK ++A+ D +    +EP N+  Q +L RL   + +
Sbjct:    67 SRAIDINSSDIKALYRRCQALEHLGKLDQAFKDVQRCATLEPRNQNFQEMLRRLNTSIQE 126

Query:   131 RMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKS-GVAKQIN 189
             +++      ++V  MF+ + D ++  DKR  A NNL+VL RE +GAE + ++ GVA  + 
Sbjct:   127 KLRVQFSTDSRVQKMFEILLDENSEADKREKAANNLIVLGREEAGAEKIFQNNGVALLLQ 186

Query:   190 TL 191
              L
Sbjct:   187 LL 188

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1PUV3 UNC45B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 303 (111.7 bits), Expect = 9.2e-26, P = 9.2e-26
 Identities = 67/176 (38%), Positives = 105/176 (59%)

Query:    11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
             +LKE GN  F+  DY+ A   Y++ALK+T +++   AT  +NRAA  LK     +   D 
Sbjct:     8 QLKEEGNRHFQLQDYKAATKSYSQALKLTKDKAL-LATLYRNRAACGLKTESYVQAASDA 66

Query:    71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
             S++++I   D KAL+RRCQA E +GK ++A+ D +    +EP N+  Q  L RL   + +
Sbjct:    67 SRAIDINSSDIKALYRRCQALEHLGKLDQAFKDVQRCATLEPRNQNFQETLRRLNTSIQE 126

Query:   131 RMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKS-GVA 185
             +++      ++V  MF+ + D S+  DK   A NNL+VL RE +GAE + ++ GVA
Sbjct:   127 KLRVQFSTDSRVQKMFEILLDESSDADKLEKAANNLIVLGREEAGAERIFQNNGVA 182

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	401
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-16
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	7e-13
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-05
PRK02603	172	PRK02603, PRK02603, photosystem I assembly protein	2e-05
pfam11701	155	pfam11701, UNC45-central, Myosin-binding striated	1e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.001
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.003
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
             L   GN  +K GDY+ AL++Y KAL++      + A    N AA Y K  + ++ +ED
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGKYEEALED 56

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
             K+LE+ PD+ KA +    AY  +GK+EEA   
Sbjct: 57  YEKALELDPDNAKAYYNLGLAYYKLGKYEEALEA 90

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 69.6 bits (170), Expect = 7e-13
 Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           KLKE GN A++  D+  A+  Y+KA+     E         NRAA +      +KV+ED 
Sbjct: 129 KLKEKGNKAYRNKDFNKAIKLYSKAI-----ECKPDPVYYSNRAACHNALGDWEKVVEDT 183

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP-TNKAIQPVLSRLFAIVT 129
           + +LE+ PD  KAL RR  AY+ +GK+ +A  D      ++   N+     + RL     
Sbjct: 184 TAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL---- 239

Query: 130 KRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNN 165
                 +  ++K     K + +T       VT V N
Sbjct: 240 -----KKFAESKA----KEILETKPENLPSVTFVGN 266

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 5/73 (6%)

Query: 7  NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN-DK 65
          ++   LK  GN+ FK GDY+ A++ Y KAL++      + A    N A  YLK  ++ ++
Sbjct: 1  DNAEALKNLGNALFKLGDYDEAIEAYEKALEL----DPDNAEAYYNLALAYLKLGKDYEE 56

Query: 66 VIEDCSKSLEIVP 78
           +ED  K+LE+ P
Sbjct: 57 ALEDLEKALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 45  ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEAYTD 103
           + A  LKN      K    D+ IE   K+LE+ PD+ +A +    AY  +GK +EEA  D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 104 AKHIHRVEP 112
            +    ++P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 49  CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108
            L N   +Y K    D+ +E   K+LE+ PD+  A +    AY  +GK+EEA  D +   
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 109 RVEPTN 114
            ++P N
Sbjct: 62  ELDPDN 67

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 16 GNSAFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
               + GDY+ AL+   KAL++     E+  E A  L N A +YL     D+ +E   K
Sbjct: 12 ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71

Query: 73 SLEI 76
          +L +
Sbjct: 72 ALAL 75

Length = 78

>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 15  SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74
            G SA   G+Y  AL+ Y +ALK+  E+ ++R+  L N   +Y    ++DK +E   ++L
Sbjct: 41  DGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL 99

Query: 75  EIVPDDPKAL 84
           E+ P  P AL
Sbjct: 100 ELNPKQPSAL 109

Length = 172

>gnl|CDD|221172 pfam11701, UNC45-central, Myosin-binding striated muscle assembly central

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 211 IIKQGVDILKRLYM-SKNENIRVRALVGLCKL 241
           I K G++ LK LY  SK++ I+V A V LCKL
Sbjct: 124 ISKNGLEWLKDLYKNSKDDEIKVLAAVVLCKL 155

The UNC-45 or small muscle protein 1 of C.elegans is expressed in two forms from different genomic positions in mammals, as a general tissue protein UNC-45a and a specific form Unc-45b expressed only in striated and skeletal muscle. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) domains towards their N-terminal, a UCS domain at the C-terminal that contains a number of Arm repeats pfam00514 and this central region of approximately 400 residues. Both the general form and the muscle form of UNC-45 function in myotube formation through cell fusion. Myofibril formation requires both GC and SM UNC-45, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils. The S. pombe Rng3p, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90. The exact function of this central region is not known. Length = 155

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 20  FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79
           +K G YE AL+ Y KAL++  +     A    N    Y K  + ++ +E   K+LE+ P+
Sbjct: 45  YKLGKYEEALEDYEKALELDPDN----AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
          A  L N    YLK  + D+ +E   K+LE+ P++
Sbjct: 1  AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
          A  L N    YLK    D+ +E   K+LE+ P++
Sbjct: 1  AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G +    GD   A+  + K L +  +     A  L   A  Y       K I    ++LE
Sbjct: 608 GRAQLAAGDLNKAVSSFKKLLALQPDS----ALALLLLADAYAVMKNYAKAITSLKRALE 663

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126
           + PD+ +A     Q   A  + E A   AK + +  P       +   L+ 
Sbjct: 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
                  L  +G S ++ G+ E A  +  + LK  A  SH+    L   A++ L+  + D
Sbjct: 291 APEYLPALLLAGASEYQLGNLEQAYQYLNQILKY-APNSHQARRLL---ASIQLRLGRVD 346

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           + I   S +L + PDDP AL    +AY A+G FE+A
Sbjct: 347 EAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA 382

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 38.7 bits (88), Expect = 0.004
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
            D  +   +  + ++ GDYE AL+ Y KAL+    E +E A  L    A+     + ++ 
Sbjct: 128 PDLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEA 186

Query: 67  IEDCSKSLEIVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125
           +E   K+L++ PD D +AL      Y  +GK+EEA    +    ++P N      L+ L 
Sbjct: 187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL 246

Query: 126 A 126
            
Sbjct: 247 L 247

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	401
KOG4151|consensus	748		99.88
KOG0553|consensus	304		99.83
KOG0550|consensus	486		99.77
KOG0543|consensus	397		99.75
KOG4234|consensus	271		99.74
KOG0548|consensus	539		99.74
KOG1126|consensus	638		99.68
PRK15359	144	type III secretion system chaperone protein SscB;	99.68
KOG0624|consensus	504		99.64
KOG0547|consensus	606		99.63
KOG4626|consensus	966		99.62
KOG0624|consensus	504		99.61
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.6
KOG4648|consensus	536		99.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.59
KOG0548|consensus	539		99.57
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.55
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.53
KOG4626|consensus	966		99.53
KOG0551|consensus	390		99.53
KOG1155|consensus	559		99.53
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.52
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.5
PRK11189	296	lipoprotein NlpI; Provisional	99.48
PRK12370	553	invasion protein regulator; Provisional	99.47
KOG1155|consensus	559		99.44
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.43
PRK12370	553	invasion protein regulator; Provisional	99.41
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.4
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.4
KOG0545|consensus	329		99.4
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.39
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.37
PRK15359	144	type III secretion system chaperone protein SscB;	99.37
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.37
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.35
KOG0547|consensus	606		99.35
KOG1126|consensus	638		99.35
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.33
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.33
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.33
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.32
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.32
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.31
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.31
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.29
KOG4642|consensus	284		99.29
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.27
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.27
KOG0376|consensus	476		99.26
PLN02789	320	farnesyltranstransferase	99.26
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.26
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.25
PRK11189	296	lipoprotein NlpI; Provisional	99.25
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.23
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.22
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.21
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.2
KOG2002|consensus	1018		99.18
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.18
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.18
KOG1125|consensus	579		99.17
KOG0553|consensus	304		99.15
KOG1125|consensus	579		99.14
PRK15331	165	chaperone protein SicA; Provisional	99.13
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.13
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.11
KOG0550|consensus	486		99.1
PRK10803	263	tol-pal system protein YbgF; Provisional	99.1
KOG1173|consensus	611		99.08
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.07
PLN02789	320	farnesyltranstransferase	99.07
KOG2076|consensus	895		99.07
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.07
KOG1173|consensus	611		99.06
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.04
KOG2003|consensus	840		99.02
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.02
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.0
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.97
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.96
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.96
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.96
KOG3060|consensus	289		98.95
PF13512	142	TPR_18: Tetratricopeptide repeat	98.93
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.93
KOG1840|consensus	508		98.91
PF13371	73	TPR_9: Tetratricopeptide repeat	98.91
KOG4555|consensus	175		98.89
KOG1840|consensus	508		98.89
PRK14574	822	hmsH outer membrane protein; Provisional	98.87
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.87
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.87
KOG2076|consensus	895		98.86
KOG2002|consensus	1018		98.86
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.86
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.85
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.84
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.83
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.82
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.81
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.81
PRK14574	822	hmsH outer membrane protein; Provisional	98.77
KOG1308|consensus	377		98.76
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.75
PF12688	120	TPR_5: Tetratrico peptide repeat	98.75
KOG1174|consensus	564		98.74
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.74
KOG4162|consensus	799		98.74
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.73
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.72
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.71
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.71
PF13371	73	TPR_9: Tetratricopeptide repeat	98.71
KOG1156|consensus	700		98.7
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.69
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.68
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.67
KOG0495|consensus	913		98.66
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.66
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.66
KOG1129|consensus	478		98.63
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.61
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.6
KOG3060|consensus	289		98.6
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.59
KOG1174|consensus	564		98.58
KOG4162|consensus	799		98.56
KOG1128|consensus	777		98.55
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.55
KOG1129|consensus	478		98.5
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.48
PRK11906	458	transcriptional regulator; Provisional	98.47
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.47
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.46
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.44
PRK15331	165	chaperone protein SicA; Provisional	98.44
KOG1127|consensus	1238		98.4
PRK10803	263	tol-pal system protein YbgF; Provisional	98.39
KOG1156|consensus	700		98.38
KOG1310|consensus	758		98.36
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.35
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.34
PRK11906	458	transcriptional regulator; Provisional	98.33
KOG4648|consensus	536		98.32
KOG4234|consensus	271		98.29
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.27
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.27
KOG0543|consensus	397		98.27
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.26
KOG0546|consensus	372		98.25
KOG1128|consensus	777		98.24
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.21
PLN03218	1060	maturation of RBCL 1; Provisional	98.2
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.19
KOG1127|consensus	1238		98.19
PF12688	120	TPR_5: Tetratrico peptide repeat	98.17
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.15
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.13
KOG2003|consensus	840		98.09
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.02
KOG2376|consensus	652		98.02
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.02
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.02
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	98.02
PF13431	34	TPR_17: Tetratricopeptide repeat	98.0
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.99
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.97
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.95
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.94
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.93
PF13428	44	TPR_14: Tetratricopeptide repeat	97.92
PF13428	44	TPR_14: Tetratricopeptide repeat	97.92
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.91
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.87
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.86
KOG1130|consensus	639		97.84
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.82
KOG3785|consensus	557		97.78
KOG1130|consensus	639		97.77
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.76
PLN03218	1060	maturation of RBCL 1; Provisional	97.76
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.75
KOG4642|consensus	284		97.74
KOG4555|consensus	175		97.72
KOG0495|consensus	913		97.71
PF13512	142	TPR_18: Tetratricopeptide repeat	97.69
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.68
KOG2796|consensus	366		97.62
KOG3785|consensus	557		97.62
PRK10941	269	hypothetical protein; Provisional	97.6
KOG2376|consensus	652		97.5
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.48
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.44
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.41
KOG4340|consensus	459		97.41
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.38
PF13431	34	TPR_17: Tetratricopeptide repeat	97.37
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.37
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.34
KOG0551|consensus	390		97.32
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.29
KOG0376|consensus	476		97.28
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.16
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.15
PLN03077	857	Protein ECB2; Provisional	97.15
KOG3824|consensus	472		97.14
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.07
KOG1915|consensus	677		97.04
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.03
KOG2053|consensus	932		97.0
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.99
KOG3081|consensus	299		96.94
KOG1941|consensus	518		96.91
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.9
KOG1915|consensus	677		96.87
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.86
KOG0545|consensus	329		96.85
KOG4507|consensus	886		96.8
KOG2053|consensus	932		96.79
KOG1941|consensus	518		96.78
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.77
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.74
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.74
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.74
PLN03077	857	Protein ECB2; Provisional	96.71
KOG1308|consensus	377		96.7
PRK04841	903	transcriptional regulator MalT; Provisional	96.67
KOG2610|consensus	491		96.66
KOG4507|consensus	886		96.65
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.61
KOG2471|consensus	696		96.59
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.59
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.56
KOG4340|consensus	459		96.52
PRK04841	903	transcriptional regulator MalT; Provisional	96.49
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.48
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.43
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.4
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.39
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.34
COG2912	269	Uncharacterized conserved protein [Function unknow	96.32
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.32
KOG4814|consensus	872		96.31
KOG3364|consensus	149		96.3
KOG2796|consensus	366		96.14
PRK10941	269	hypothetical protein; Provisional	96.14
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.13
KOG3081|consensus	299		96.09
KOG1070|consensus	1710		96.01
KOG1586|consensus	288		95.99
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.88
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.85
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.77
KOG3824|consensus	472		95.76
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.7
KOG2047|consensus	835		95.69
KOG2610|consensus	491		95.67
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.66
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.35
KOG1586|consensus	288		95.35
KOG3617|consensus	1416		95.19
KOG2396|consensus	568		95.12
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.1
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.01
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.95
KOG1070|consensus	1710		94.88
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.74
KOG1585|consensus	308		94.65
KOG1585|consensus	308		94.6
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.55
KOG3364|consensus	149		94.53
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.51
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.25
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.18
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.92
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.9
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.72
KOG1550|consensus	552		93.7
KOG2471|consensus	696		93.68
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.62
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	93.53
PF05804	708	KAP: Kinesin-associated protein (KAP)	93.4
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	93.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.25
KOG3617|consensus	1416		93.15
KOG4814|consensus	872		93.14
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.04
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.84
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.77
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.59
KOG1550|consensus	552		92.45
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.41
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.4
KOG0530|consensus	318		92.29
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.96
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.86
COG2912	269	Uncharacterized conserved protein [Function unknow	91.84
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.66
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.23
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.13
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.09
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.03
PRK09687	280	putative lyase; Provisional	91.02
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	90.71
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.65
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.63
KOG1310|consensus	758		90.55
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	89.87
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	89.84
KOG1839|consensus	1236		89.65
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.65
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.49
KOG4224|consensus	550		89.4
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	89.23
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	89.2
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	89.18
COG5191	435	Uncharacterized conserved protein, contains HAT (H	89.12
COG3947	361	Response regulator containing CheY-like receiver a	88.98
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.79
KOG1914|consensus	656		88.69
KOG0530|consensus	318		88.53
KOG2300|consensus	629		88.44
KOG2047|consensus	835		88.35
COG3947	361	Response regulator containing CheY-like receiver a	88.32
KOG1077|consensus	938		88.28
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.18
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.07
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.64
PRK09687	280	putative lyase; Provisional	87.57
KOG0686|consensus	466		87.5
KOG2062|consensus	929		87.25
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	87.21
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.05
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.77
KOG2041|consensus	1189		86.71
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	86.28
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	85.07
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.03
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	84.73
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	84.26
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	83.72
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.45
KOG0529|consensus	421		83.42
KOG1464|consensus	440		83.41
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	82.67
KOG2422|consensus	665		82.38
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	82.33
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.05
COG4941	415	Predicted RNA polymerase sigma factor containing a	81.91
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	81.7
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	81.68
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	81.21
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.85
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.84
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	80.78
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	80.22
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	80.04

>KOG4151|consensus

Probab=99.88  E-value=5.3e-22  Score=206.04  Aligned_cols=360  Identities=21%  Similarity=0.224  Sum_probs=268.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQ--NQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p-~~~~~~~~~~n~a~~y~kl--g~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      ..+...+.+||.+|..++|..|.--|..++.+. | ++...+..+.|.+.||+.+  ++|..++..|+-++...|...++
T Consensus        51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~ll-p~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~  129 (748)
T KOG4151|consen   51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLL-PKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA  129 (748)
T ss_pred             HHHHHHHhhhhHHhhhhhhhccchhhhhhheec-cccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence            456778999999999999999999999999999 6 4567888999999999865  69999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh-hHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPM-DKRVTA  162 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~a  162 (401)
                      ++.|+.+|..+++++-|+++..-....+|++..+...+.+++..+.....+....+-    -+........+. ..+..-
T Consensus       130 Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d~~s~~~~~----~~~~~~~vg~~~~~~~~i~  205 (748)
T KOG4151|consen  130 LLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKDLASDESEL----PLEAVAPVGASPALIAKIC  205 (748)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcCCccccccC----ChhhhccccCchHHHHHHH
Confidence            999999999999999999998888899999988888777776665433322210000    000000000000 011111


Q ss_pred             HHHHHHhhh-------cchhhHHHhhhhHHHH---------HHHHhh-c--c-----------------------CchhH
Q psy4703         163 VNNLVVLAR-------EMSGAEMLLKSGVAKQ---------INTLLK-C--E-----------------------TNEEI  200 (401)
Q Consensus       163 ~~~L~~l~~-------~~~gae~~~~e~~v~~---------L~~ll~-~--~-----------------------~~~e~  200 (401)
                      .+.+.....       ...+.+..|.+..+..         +...+. .  +                       ..++.
T Consensus       206 l~rl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~l~a~~~~~v~~~~~~~~~e~l~~~~l~~~~~~~e~  285 (748)
T KOG4151|consen  206 LQRLYKSKKTDCVEAFLTKDGERLFKERVFEDPSDLKFKKKSKCKLKAAQEDPVSDTVKVMDKEQLLEEILAVGGSQDEL  285 (748)
T ss_pred             HHHHhhhccchhHHhhcCCcHHhhhhhhhccCcccchhhhhhhhhhhhhcCCcccchhhhhhHHHHHHHhhcccccchHH
Confidence            111111110       0111222221111110         000000 0  0                       00000


Q ss_pred             HhhH--HHHH------HH--HHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhh
Q psy4703         201 YLGE--EDFI------TS--IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFL  270 (401)
Q Consensus       201 ~lA~--e~fi------~~--i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l  270 (401)
                      ..-+  .-|+      .+  ..+-++.+|+.+|++.++-+++++.+++|+.+..++++....++.+++..+|.+.||.|+
T Consensus       286 ~~~~~~~~~v~~~~i~laql~~~~~~~~lR~ii~~~~~~~~v~ik~~~~~~~~vtit~~a~l~l~~sa~i~l~~~~r~~~  365 (748)
T KOG4151|consen  286 AQVWRTLKLVYGDDIRLAQLPLNCTVKILREIIHSFPSLRAVLIKYRDTEGDLVTITTTAELRLAESAVIKLGKTLRFYV  365 (748)
T ss_pred             hhhhhhhhhhhccHHHHHhcchhhchHHHHHHHhcccchhhheeeeccCCcceeeeeehhhhhhhhHHHHHHHHHhhhhe
Confidence            0000  1111      22  267889999999999888889999999999999999999999999999999999999999


Q ss_pred             cCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhh-hhhhHHhhcccCCc------HHHH
Q psy4703         271 VNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNG-TQSDALKDVDKAFD------EFME  343 (401)
Q Consensus       271 ~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~n~~~~~~------~~~~  343 (401)
                      +..+.+.+.|        |+|+++++||.+++|..+++++..++.....+.+.|+ +. |++.|.++.+.      ++|-
T Consensus       366 ve~s~~qd~r--------y~s~~a~~ke~~i~d~~s~~aln~l~~~~~~~~~~~~~lg-~~l~s~a~~~~~~sE~~qel~  436 (748)
T KOG4151|consen  366 VEVSPEQDPR--------YLSIDAELKELKIEDSSSSKALNGLKGDAVESYLDLHELG-MKLYSEAMEEEVTSEKAQELF  436 (748)
T ss_pred             eecCccccch--------hhccccchhhhhccccchHHHHHhhhcccccccccHHHHH-HHHHHHHHHhhhhhhhhHHHH
Confidence            9877777767        9999999999999999999999999988845589999 77 99999999988      8999


Q ss_pred             HHHhhHhhhhhhhhccCCCccchHHHHHH-HHHHHhcccccee
Q psy4703         344 EVAKLEKEEAEMLETLYQDEKELADFYSL-LSTLVNGSSSVGM  385 (401)
Q Consensus       344 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~  385 (401)
                      +|++|++||+  |   +.||+|.-+++.. +++++.-|++.+.
T Consensus       437 ~la~~a~qev--~---~~~~~n~~~v~~~r~rk~~~~~~~~~~  474 (748)
T KOG4151|consen  437 DLAAFAFQEV--A---ALSPLNWGNVHMSRARKRLSLDEDPSC  474 (748)
T ss_pred             HHHHHHHhhh--h---hccccccchHHHHHHHHhhccCcchhh
Confidence            9999999999  8   8899999999999 9999999988765

>KOG0553|consensus

Probab=99.83  E-value=2.9e-20  Score=175.04  Aligned_cols=122  Identities=32%  Similarity=0.437  Sum_probs=115.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      ...++.++.+||.+.+.++|.+|+..|++||+++ |+   ++++|.|||.+|.++|.|+.|+++|+.||.+||.+.++|.
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~  153 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-PT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYG  153 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHH
Confidence            4568999999999999999999999999999999 77   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      |+|.+|..+|+|++|+..|+++|+++|+|...+..|..+...+.+.
T Consensus       154 RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  154 RLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP  199 (304)
T ss_pred             HHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999888887776665543

>KOG0550|consensus

Probab=99.77  E-value=1.6e-17  Score=161.63  Aligned_cols=222  Identities=26%  Similarity=0.297  Sum_probs=171.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .|+..+.+++.||.+|+.|+|..|-++|++||.++ |+ ...++.+|.|||.+..++|+..+|+.+|++|+.+||...+|
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika  323 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA  323 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC-ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence            46678889999999999999999999999999999 64 45688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA  162 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a  162 (401)
                      |.++|.||+.+++|++|+++|++|++.+.+ ..+...++++...+++.         +-++.|+++.. ...+...+.++
T Consensus       324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS---------kRkd~ykilGi~~~as~~eikka  393 (486)
T KOG0550|consen  324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS---------KRKDWYKILGISRNASDDEIKKA  393 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh---------hhhhHHHHhhhhhhcccchhhhH
Confidence            999999999999999999999999999877 88888888888777663         33457888877 67778889999


Q ss_pred             HHHHHHhhhcch------hhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHHHHhcHHHHHHHHc--CCChhHHHHH
Q psy4703         163 VNNLVVLAREMS------GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVDILKRLYM--SKNENIRVRA  234 (401)
Q Consensus       163 ~~~L~~l~~~~~------gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i~~~gv~~Lk~l~~--s~~d~i~~ra  234 (401)
                      ++.+.+.+|++.      .+|..|++.|  ....++.   +++-        +....-|.++=..--.  -=++.-+.||
T Consensus       394 yrk~AL~~Hpd~~agsq~eaE~kFkevg--eAy~il~---d~~k--------r~r~dsg~dle~~~~~~a~~dp~~~~~a  460 (486)
T KOG0550|consen  394 YRKLALVHHPDKNAGSQKEAEAKFKEVG--EAYTILS---DPMK--------RVRFDSGQDLEEVGSGGAGFDPFNIFRA  460 (486)
T ss_pred             HHHHHHHhCCCcCcchhHHHHHHHHHHH--HHHHHhc---CHHH--------HhhcccccchhhhcCCCcCcChhhhhhh
Confidence            999999999863      4566666633  3444444   4544        3333444332222111  0122334466


Q ss_pred             HHhhhhccccCCCCCC
Q psy4703         235 LVGLCKLGSMGGSDAS  250 (401)
Q Consensus       235 lvgLckl~~~gg~d~~  250 (401)
                      .-.+..++..||.+.+
T Consensus       461 ~qa~~~f~f~gg~~~n  476 (486)
T KOG0550|consen  461 FQALVQFGFPGGFSEN  476 (486)
T ss_pred             cccceEEeccCCCCCC
Confidence            6566666665555444

>KOG0543|consensus

Probab=99.75  E-value=2.8e-17  Score=160.61  Aligned_cols=137  Identities=33%  Similarity=0.528  Sum_probs=120.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL   74 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~------------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL   74 (401)
                      ..+...++.||.+|+.|+|..|+..|++|+..- +.            ......++.|+|.||+++++|.+|+..|+++|
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l-~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFL-EYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHh-hccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            356778999999999999999999999999876 31            13466789999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        75 ~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      +++|+|++|+||+|+|+..+|+|+.|+.+|+++++++|+|..+...|.++....++.....       .+||..++.
T Consensus       285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke-------kk~y~~mF~  354 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE-------KKMYANMFA  354 (397)
T ss_pred             hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999888877765433       346666666

>KOG4234|consensus

Probab=99.74  E-value=3.2e-17  Score=146.18  Aligned_cols=131  Identities=37%  Similarity=0.577  Sum_probs=118.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      ...+..++..||.+|+.|+|.+|...|+.||.++||. ......+|.|+|.|+++++.++.||.+|+++|+++|.+.+|+
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            3457789999999999999999999999999999422 246789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      .|||.+|.++..|++|+.+|++.++++|...++...+.++-..+.++....+
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK  223 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK  223 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888777655443

>KOG0548|consensus

Probab=99.74  E-value=3.9e-17  Score=163.52  Aligned_cols=177  Identities=24%  Similarity=0.345  Sum_probs=142.7

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .+|..++..+..||.+|+.|+|..|+.+|++||..+ |+   ++.+|.|||.||.+++.|..|+.+|+.+|+++|+++++
T Consensus       353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~---Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg  428 (539)
T KOG0548|consen  353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE---DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA  428 (539)
T ss_pred             hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence            467888999999999999999999999999999999 77   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHH--HH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKR--VT  161 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~  161 (401)
                      |+|.|.++..+.+|+.|.+.|++++++||++.++...+.++...+....        .-..++++....|. ...+  -.
T Consensus       429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~--------~~ee~~~r~~~dpe-v~~il~d~  499 (539)
T KOG0548|consen  429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDE--------TPEETKRRAMADPE-VQAILQDP  499 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCC--------CHHHHHHhhccCHH-HHHHHcCH
Confidence            9999999999999999999999999999999999999999888652111        11123333333221 1111  23


Q ss_pred             HHHHHHHhhhcchhhHHHhhhhH-HHHHHHHhh
Q psy4703         162 AVNNLVVLAREMSGAEMLLKSGV-AKQINTLLK  193 (401)
Q Consensus       162 a~~~L~~l~~~~~gae~~~~e~~-v~~L~~ll~  193 (401)
                      ++++.+.+++.+++....+.+.+ +..|..+++
T Consensus       500 ~m~~~l~q~q~~pa~~~~~~n~~v~~ki~~l~~  532 (539)
T KOG0548|consen  500 AMRQILEQMQENPALQEHLKNPMVMQKIEKLIS  532 (539)
T ss_pred             HHHHHHHHHHhCHHHHHHHhccHHHHHHHHHHH
Confidence            56677777777776655555544 556666655

>KOG1126|consensus

Probab=99.68  E-value=1.5e-16  Score=162.68  Aligned_cols=164  Identities=17%  Similarity=0.191  Sum_probs=152.0

Q ss_pred             CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      +|..+|..++.|...||.+.-+++++.||.+|.+|++++ |+   ++.+|..+|.-+...++|++|..+|..||.++|.+
T Consensus       413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~---faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh  488 (638)
T KOG1126|consen  413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PR---FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH  488 (638)
T ss_pred             HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-Cc---cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence            367889999999999999999999999999999999999 77   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (401)
                      ..|||.+|.+|.++++++.|.-.|++|++++|.|..+...++.++..+++.+++        .++|++++. .+.+.-.+
T Consensus       489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A--------L~~~~~A~~ld~kn~l~~  560 (638)
T KOG1126|consen  489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA--------LQLYEKAIHLDPKNPLCK  560 (638)
T ss_pred             hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH--------HHHHHHHHhcCCCCchhH
Confidence            999999999999999999999999999999999999999999999999887544        458999988 77788888


Q ss_pred             HHHHHHHHHhhhcchhh
Q psy4703         160 VTAVNNLVVLAREMSGA  176 (401)
Q Consensus       160 ~~a~~~L~~l~~~~~ga  176 (401)
                      ...+..|..+++++++.
T Consensus       561 ~~~~~il~~~~~~~eal  577 (638)
T KOG1126|consen  561 YHRASILFSLGRYVEAL  577 (638)
T ss_pred             HHHHHHHHhhcchHHHH
Confidence            99999999988875544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.68  E-value=1.4e-15  Score=132.59  Aligned_cols=121  Identities=11%  Similarity=0.148  Sum_probs=111.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      |+.+|++   +...|..++..|+|++|+.+|.+++.++ |+   +..+|.++|.++..+|+|++|+..|.++++++|+++
T Consensus        20 l~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~   92 (144)
T PRK15359         20 LSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQ-PW---SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP   92 (144)
T ss_pred             HHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            4556665   5678999999999999999999999999 76   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                      .+++++|.++..+|++++|+..|+++++++|+++......+.+...+.
T Consensus        93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988877665543

>KOG0624|consensus

Probab=99.64  E-value=1.3e-15  Score=145.39  Aligned_cols=190  Identities=21%  Similarity=0.229  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      .....+.+......++|.++++.+++.++.+ |. .+.....+.-++.||..-+++.+||+.|+++|.++|+++.++..|
T Consensus       269 v~K~les~e~~ie~~~~t~cle~ge~vlk~e-p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR  347 (504)
T KOG0624|consen  269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNE-PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR  347 (504)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            3445567778889999999999999999999 75 455666777789999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL  166 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L  166 (401)
                      |.+|+.-..|++|+.+|++|.+++|+|..+.+.+.+......+..         -.+||+++.. .+.+.+.+.++++.+
T Consensus       348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~---------kRDYYKILGVkRnAsKqEI~KAYRKl  418 (504)
T KOG0624|consen  348 AEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG---------KRDYYKILGVKRNASKQEITKAYRKL  418 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc---------cchHHHHhhhcccccHHHHHHHHHHH
Confidence            999999999999999999999999999999999988776655432         3568999998 899999999999999


Q ss_pred             HHhhhcc--------hhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHHHHhcHHHHHH
Q psy4703         167 VVLAREM--------SGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVDILKR  221 (401)
Q Consensus       167 ~~l~~~~--------~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i~~~gv~~Lk~  221 (401)
                      +..||++        +.+|+-|.+  +....++++   ||+.        +...++|.+.|..
T Consensus       419 AqkWHPDNFqdEeEKKkAEKKFID--IAAAKEVLs---d~Ek--------RrqFDnGeDPLD~  468 (504)
T KOG0624|consen  419 AQKWHPDNFQDEEEKKKAEKKFID--IAAAKEVLS---DPEK--------RRQFDNGEDPLDP  468 (504)
T ss_pred             HHhcCCccccCHHHHHHHHHhhhh--HHHHHHhhc---CHHH--------HhhccCCCCCCCh
Confidence            9999984        335666665  555555665   8999        7788899887754

>KOG0547|consensus

Probab=99.63  E-value=3e-15  Score=148.42  Aligned_cols=124  Identities=35%  Similarity=0.575  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      +.+.+++++||.+|++|+|++||.+|++||+++ |+   .+.+|.||+.||..+|+|++.+++|+++|+++|++++|++|
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-p~---epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~R  188 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC-PD---EPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLR  188 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-CC---CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHH
Confidence            457899999999999999999999999999999 76   69999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCC-CCccHHHHHHHHHHHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEP-TNKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P-~~~~~~~~L~~l~~~~~~~~~a  134 (401)
                      |+.++..+|++.+|+.|..-..-++. +|..+...+.++....+.....
T Consensus       189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~  237 (606)
T KOG0547|consen  189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAK  237 (606)
T ss_pred             HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999875443332 5667777788877776655433

>KOG4626|consensus

Probab=99.62  E-value=4e-14  Score=143.69  Aligned_cols=139  Identities=19%  Similarity=0.258  Sum_probs=124.0

Q ss_pred             CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      ++.++|+-+.+|.+.||.+-..+.|++|+.+|.+|+.+. |.   .+.++-|+|-+|..+|..+-||..|+++|+++|++
T Consensus       244 AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn---~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F  319 (966)
T KOG4626|consen  244 AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN---HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF  319 (966)
T ss_pred             hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc---chhhccceEEEEeccccHHHHHHHHHHHHhcCCCc
Confidence            367899999999999999999999999999999999999 76   88999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      +.||.++|.++-..|+..+|..+|.+|+.++|+...+..+|+.++..++....+..        +|..++.
T Consensus       320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~--------ly~~al~  382 (966)
T KOG4626|consen  320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR--------LYLKALE  382 (966)
T ss_pred             hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH--------HHHHHHh
Confidence            99999999999999999999999999999999999999999999888887755544        5666665

>KOG0624|consensus

Probab=99.61  E-value=1.1e-13  Score=132.44  Aligned_cols=213  Identities=17%  Similarity=0.193  Sum_probs=160.3

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .+|.+++...+.|+.++.+|++.+|+..|..|++.+ |+   +..+++.||.+|+.+|+-.-|+.+++++|++.|++.-|
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~---~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A  108 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PN---NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA  108 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-ch---hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH
Confidence            467889999999999999999999999999999999 77   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhc-CCCC
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV---LSRLFAIVTKRMQENEQL----QNKVHNMFKYVFD-TSAP  155 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~---L~~l~~~~~~~~~a~~~~----~~~~~~~~~~~~~-~~~~  155 (401)
                      ...||.+++++|++++|..+|..++..+|++....+.   +..+.+............    ...+..|...+++ .|-+
T Consensus       109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd  188 (504)
T KOG0624|consen  109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD  188 (504)
T ss_pred             HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence            9999999999999999999999999999977555444   444433333333222211    1446778888888 7888


Q ss_pred             hhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhcc-CchhH--HhhHHHHHHHHHHhcHHHHHHHHcCCChh
Q psy4703         156 MDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCE-TNEEI--YLGEEDFITSIIKQGVDILKRLYMSKNEN  229 (401)
Q Consensus       156 ~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~-~~~e~--~lA~e~fi~~i~~~gv~~Lk~l~~s~~d~  229 (401)
                      ...+..++.|++..+.+..         ++.+|....+++ .+.+.  .++--.|--+-..+.+.-++.|++-++|.
T Consensus       189 a~l~~~Rakc~i~~~e~k~---------AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH  256 (504)
T KOG0624|consen  189 ASLRQARAKCYIAEGEPKK---------AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH  256 (504)
T ss_pred             hHHHHHHHHHHHhcCcHHH---------HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence            8999999999998887633         233444443332 22332  22211222333445566666777655553

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.60  E-value=2.3e-14  Score=143.05  Aligned_cols=117  Identities=20%  Similarity=0.359  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~   89 (401)
                      ..++.+|+.+|..|+|++|+.+|++||+++ |+   +..+|+++|.+|+++|+|++|+.++++++.++|+++.+|+++|.
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~   78 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLD-PN---NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT   78 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            457889999999999999999999999999 77   89999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703          90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus        90 a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~  130 (401)
                      +|..+|+|++|+..|+++++++|+++.+...++.+...+..
T Consensus        79 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         79 ACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998888776643

>KOG4648|consensus

Probab=99.59  E-value=3.1e-15  Score=142.90  Aligned_cols=115  Identities=36%  Similarity=0.502  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      .+..++++||.||++|.|++||.||.+++.++ |.   ++.++.|||.+|+++++|..|..+|+.|+.+|..+.+||-||
T Consensus        96 ~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~-P~---NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR  171 (536)
T KOG4648|consen   96 KASEIKERGNTYFKQGKYEEAIDCYSTAIAVY-PH---NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRR  171 (536)
T ss_pred             hhHHHHHhhhhhhhccchhHHHHHhhhhhccC-CC---CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence            34567999999999999999999999999999 76   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~  126 (401)
                      |.+...+|...+|.++|+.+|++.|++.+....++++..
T Consensus       172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  172 MQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            999999999999999999999999998777776666544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.59  E-value=5.3e-14  Score=120.01  Aligned_cols=123  Identities=16%  Similarity=0.248  Sum_probs=114.5

Q ss_pred             CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      ++..+|+++......|..++..|++++|+..|++++..+ |+   +..++.++|.+++.+|++++|+..++++++++|.+
T Consensus         9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PY---NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            367889999999999999999999999999999999999 76   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      +..++.+|.+|..+|++++|+..|+++++++|++........++...
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  131 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM  131 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877766555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0548|consensus

Probab=99.57  E-value=1.2e-14  Score=145.87  Aligned_cols=113  Identities=30%  Similarity=0.484  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      +..++.+||.+|..|+|+.|+.+|++||.++ |.   +..+|.||..||.++|+|++|+.+..+.++++|+++++|.|+|
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~-p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~G   77 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLS-PT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKG   77 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccC-CC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhH
Confidence            4567899999999999999999999999999 76   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      .++..+|+|++|+..|.+.|+.+|+|+.....|..+.
T Consensus        78 aa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   78 AALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            9999999999999999999999999999999998887

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.55  E-value=3.1e-13  Score=144.19  Aligned_cols=156  Identities=18%  Similarity=0.128  Sum_probs=133.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      .|..+..+...|..++..|++++|+..|+++++++ |+   ....|.++|.++..+|++++|+.+|+++++++|+++.++
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  402 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR---VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY  402 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            57788889999999999999999999999999999 76   788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~  163 (401)
                      +.+|.++..+|++++|+.+|+++++++|++..++..++.++...++..++..        +|+.+.. .|..........
T Consensus       403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~--------~~~~al~~~P~~~~~~~~lg  474 (615)
T TIGR00990       403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA--------TFRRCKKNFPEAPDVYNYYG  474 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHhCCCChHHHHHHH
Confidence            9999999999999999999999999999999998888888888777755444        5666666 455555555555


Q ss_pred             HHHHHhhhc
Q psy4703         164 NNLVVLARE  172 (401)
Q Consensus       164 ~~L~~l~~~  172 (401)
                      ..+..+++.
T Consensus       475 ~~~~~~g~~  483 (615)
T TIGR00990       475 ELLLDQNKF  483 (615)
T ss_pred             HHHHHccCH
Confidence            556665654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.53  E-value=6.5e-13  Score=141.77  Aligned_cols=138  Identities=16%  Similarity=0.153  Sum_probs=125.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      |+.+|.....+...|..++..|+|++|+..|+++++++ |+   ++.+++++|.+|+.+|+|++|+.+|+++++++|++.
T Consensus       358 l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~  433 (615)
T TIGR00990       358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SE---DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI  433 (615)
T ss_pred             HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence            56788899999999999999999999999999999999 76   789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .+++.+|.++..+|++++|+..|+++++.+|+++.++..++.++...++..++..        +|++++.
T Consensus       434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~--------~~~~Al~  495 (615)
T TIGR00990       434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE--------KFDTAIE  495 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH--------HHHHHHh
Confidence            9999999999999999999999999999999999999999999888877755544        5666655

>KOG4626|consensus

Probab=99.53  E-value=1.3e-13  Score=139.91  Aligned_cols=129  Identities=19%  Similarity=0.266  Sum_probs=69.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      |+..|+...++.+.||++-..|+..+|..+|.+|+.++ |+   .+++.+|+|.+|..+|.+++|+..|.++++..|..+
T Consensus       313 l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~---hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a  388 (966)
T KOG4626|consen  313 LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN---HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA  388 (966)
T ss_pred             HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh
Confidence            44555555556666666555566666666666666655 44   455555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a  134 (401)
                      .++.++|.+|.+.|++++|+.+|+.+++++|.-.++..+++..++.+++...+
T Consensus       389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A  441 (966)
T KOG4626|consen  389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA  441 (966)
T ss_pred             hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence            55555555555555555555555555555555555555555555544444433

>KOG0551|consensus

Probab=99.53  E-value=2.2e-13  Score=129.82  Aligned_cols=113  Identities=27%  Similarity=0.385  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      ..|+.+++.||.||+..+|..|+.+|+++|....+++..++.+|.|||+|.+.+|+|..|+.+|++|+.++|.+.++++|
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            36889999999999999999999999999998778878999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP  119 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~  119 (401)
                      =|.|++.|.+|.+|..+++..++++-....+..
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~  191 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE  191 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            999999999999999999988887655444433

>KOG1155|consensus

Probab=99.53  E-value=8.8e-13  Score=130.40  Aligned_cols=133  Identities=16%  Similarity=0.197  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a   90 (401)
                      .-.-.||-|.-+++++.|+.+|++|++++ |.   ...+|..+|.-|+.+++...|++.|++|++++|.|.+|||.+|++
T Consensus       332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~---~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQa  407 (559)
T KOG1155|consen  332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PK---YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQA  407 (559)
T ss_pred             ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cc---hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHH
Confidence            33456899999999999999999999999 77   899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4703          91 YEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP  155 (401)
Q Consensus        91 ~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  155 (401)
                      |.-++...=|+-+|++|+++-|+|+.++..|+.++..+.+..++.+        +|+++......
T Consensus       408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK--------Cykrai~~~dt  464 (559)
T KOG1155|consen  408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK--------CYKRAILLGDT  464 (559)
T ss_pred             HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH--------HHHHHHhcccc
Confidence            9999999999999999999999999999999999999988866655        88888874433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.52  E-value=4.4e-13  Score=116.95  Aligned_cols=110  Identities=14%  Similarity=0.107  Sum_probs=103.0

Q ss_pred             cCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           3 DNN-MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         3 ~~~-p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ... ++..+.++..|..++..|++++|...|+-.+.++ |.   ++..|+++|.|+..+|+|++|+..|.+++.++|+++
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            345 7788999999999999999999999999999999 76   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~  116 (401)
                      .++++.|.|++.+|+.+.|...|+.++...-.+++
T Consensus       104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        104 QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence            99999999999999999999999999998754443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.50  E-value=6.3e-13  Score=122.00  Aligned_cols=117  Identities=18%  Similarity=0.189  Sum_probs=107.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY-LKQNQ--NDKVIEDCSKSLEIVP   78 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y-~klg~--y~~Ai~~~~kAL~ldP   78 (401)
                      ++.+|++++.|...|..+...|++++|+..|++++++. |+   +..++.++|.++ ...|+  +++|...++++++.+|
T Consensus        66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~---~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP  141 (198)
T PRK10370         66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GE---NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA  141 (198)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence            56789999999999999999999999999999999999 77   899999999985 77787  5999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~  122 (401)
                      +++.+++.+|.+++.+|+|++|+..|+++++++|.+..-...++
T Consensus       142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~  185 (198)
T PRK10370        142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE  185 (198)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            99999999999999999999999999999999998765555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.48  E-value=1.5e-12  Score=126.79  Aligned_cols=106  Identities=19%  Similarity=0.123  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      ..+..++++|..+...|++++|+..|+++++++ |+   ++.+|+++|.+|..+|+|++|+..|+++++++|++..++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~  137 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALR-PD---MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLN  137 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            447889999999999999999999999999999 77   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~  116 (401)
                      +|.++...|++++|+.+|+++++++|+++.
T Consensus       138 lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        138 RGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999973

>PRK12370 invasion protein regulator; Provisional

Probab=99.47  E-value=1.6e-12  Score=137.15  Aligned_cols=163  Identities=10%  Similarity=-0.037  Sum_probs=130.8

Q ss_pred             ccCChhHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFK---------QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK   72 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~---------~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~k   72 (401)
                      ++.+|+.+..+...|..++.         .+++++|+..+++|++++ |+   ++.++..+|.++...|++++|+..|++
T Consensus       288 l~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~  363 (553)
T PRK12370        288 VNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HN---NPQALGLLGLINTIHSEYIVGSLLFKQ  363 (553)
T ss_pred             HhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            67899999999998887663         345899999999999999 77   889999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703          73 SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus        73 AL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (401)
                      +++++|+++.+++.+|.++..+|++++|+..++++++++|.++.....+..+....++..+        +...++.+...
T Consensus       364 Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ee--------A~~~~~~~l~~  435 (553)
T PRK12370        364 ANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDD--------AIRLGDELRSQ  435 (553)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHH--------HHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988766555444444444332        33356666652


Q ss_pred             --CCChhHHHHHHHHHHHhhhcchhh
Q psy4703         153 --SAPMDKRVTAVNNLVVLAREMSGA  176 (401)
Q Consensus       153 --~~~~~~~~~a~~~L~~l~~~~~ga  176 (401)
                        |............+..+|+.+++.
T Consensus       436 ~~p~~~~~~~~la~~l~~~G~~~eA~  461 (553)
T PRK12370        436 HLQDNPILLSMQVMFLSLKGKHELAR  461 (553)
T ss_pred             ccccCHHHHHHHHHHHHhCCCHHHHH
Confidence              334444555666667777754433

>KOG1155|consensus

Probab=99.44  E-value=6.3e-12  Score=124.43  Aligned_cols=136  Identities=15%  Similarity=0.179  Sum_probs=127.9

Q ss_pred             CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      ++++||+...+|--.|..+....+...|++.|++|++++ |.   +..+|+.+|++|--++-+.=|+-+|++|+++.|+|
T Consensus       356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~---DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD  431 (559)
T KOG1155|consen  356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR---DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND  431 (559)
T ss_pred             HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch---hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence            367899999999999999999999999999999999999 76   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQN  140 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~  140 (401)
                      +..|.-+|+||.++++.++|+.+|++++.....+..+...|+++++.+++..++...+.+
T Consensus       432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek  491 (559)
T KOG1155|consen  432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK  491 (559)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999999999999999999999999999888889999999999999998777664433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.43  E-value=1.3e-11  Score=112.33  Aligned_cols=157  Identities=12%  Similarity=0.072  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      ..+..+...|..++..|++++|+..|.++++.+ |+   +..++..+|.+|..+|++++|+..+.++++.+|.+..++++
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  104 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN  104 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            346788888999999999999999999999888 65   67888889999999999999999999999999988889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVE--PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~--P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~  163 (401)
                      +|.++...|++++|+..|++++...  |........++.++...++...+..        +|..+.. .+.........+
T Consensus       105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--------~~~~~~~~~~~~~~~~~~la  176 (234)
T TIGR02521       105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK--------YLTRALQIDPQRPESLLELA  176 (234)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCcCChHHHHHHH
Confidence            9999999999999999999988753  3445567777777777777654443        5555555 333344444455


Q ss_pred             HHHHHhhhcchh
Q psy4703         164 NNLVVLAREMSG  175 (401)
Q Consensus       164 ~~L~~l~~~~~g  175 (401)
                      ..+...++.+.+
T Consensus       177 ~~~~~~~~~~~A  188 (234)
T TIGR02521       177 ELYYLRGQYKDA  188 (234)
T ss_pred             HHHHHcCCHHHH
Confidence            555555555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.41  E-value=6.6e-12  Score=132.48  Aligned_cols=131  Identities=10%  Similarity=0.052  Sum_probs=120.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++.+|+++.++...|..+...|++++|+..|+++++++ |+   ++.+++++|.++...|++++|+..++++++++|.++
T Consensus       331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~---~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PI---SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence            67899999999999999999999999999999999999 77   888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVE-PTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~-P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      .+++.++.+++.+|++++|+..+++++... |+++.++..++.++...++..++..
T Consensus       407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~  462 (553)
T PRK12370        407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK  462 (553)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH
Confidence            888888888999999999999999999885 7888888999999888888765544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.40  E-value=7.5e-12  Score=103.42  Aligned_cols=113  Identities=17%  Similarity=0.214  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALF   85 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~   85 (401)
                      ++.++..|..++..|+|++|+..|.+++... |+++....+++.+|.++++.|+|++|+..|++++..+|++   +.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            4678999999999999999999999999999 7755567899999999999999999999999999999885   67899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~  122 (401)
                      .+|.++.++|++++|+..++++++..|+++.+.....
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            9999999999999999999999999999987666544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.40  E-value=7.4e-10  Score=120.39  Aligned_cols=158  Identities=16%  Similarity=0.238  Sum_probs=106.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++.+|.+...+...|..+...|++++|+..|.+++..+ |.   ....+..++.+|...|++++|+..+++++..+|.++
T Consensus       526 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  601 (899)
T TIGR02917       526 LTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ---EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP  601 (899)
T ss_pred             HHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc---chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence            34567777777777777777788888888887777777 54   556667777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV  160 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (401)
                      .+++.+|.++...|++++|+..|+++++.+|.++.++..++.++...++..++..        +|+.+.. .|.+.....
T Consensus       602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--------~~~~~~~~~~~~~~~~~  673 (899)
T TIGR02917       602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT--------SLKRALELKPDNTEAQI  673 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH--------HHHHHHhcCCCCHHHHH
Confidence            7777777777777777777777777777777777777777777766666544433        4555544 333334444


Q ss_pred             HHHHHHHHhhh
Q psy4703         161 TAVNNLVVLAR  171 (401)
Q Consensus       161 ~a~~~L~~l~~  171 (401)
                      ..+..+...++
T Consensus       674 ~l~~~~~~~~~  684 (899)
T TIGR02917       674 GLAQLLLAAKR  684 (899)
T ss_pred             HHHHHHHHcCC
Confidence            44444444444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0545|consensus

Probab=99.40  E-value=4.3e-12  Score=116.70  Aligned_cols=125  Identities=26%  Similarity=0.354  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-------CCC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------EES-------HERATCLKNRAAVYLKQNQNDKVIEDCSK   72 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-------p~~-------~~~~~~~~n~a~~y~klg~y~~Ai~~~~k   72 (401)
                      +....+..+||.+|+.|+|.+|...|..||..-.       |..       .....++.|.+.|++..|+|-++++.|+.
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            4567889999999999999999999999976421       331       34667899999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHHHH
Q psy4703          73 SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK-AIQPVLSRLFAIVTKR  131 (401)
Q Consensus        73 AL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~-~~~~~L~~l~~~~~~~  131 (401)
                      +|..+|.+++|||+||.++...-+..+|..+|+++++++|.-. .+...|..+...+.++
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek  315 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK  315 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999753 3444454444444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.39  E-value=4.7e-11  Score=108.52  Aligned_cols=138  Identities=14%  Similarity=0.222  Sum_probs=121.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PD   79 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--P~   79 (401)
                      ++.+|.+...+...|..++..|++++|+..|.++++.. |.   ...++.++|.+++..|++++|+..+.+++...  |.
T Consensus        58 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~  133 (234)
T TIGR02521        58 LEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN---NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ  133 (234)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence            45678889999999999999999999999999999999 76   77899999999999999999999999999864  56


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ....++.+|.++...|++++|...|++++..+|++..+...++.++...++..++..        +++.+..
T Consensus       134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--------~~~~~~~  197 (234)
T TIGR02521       134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA--------YLERYQQ  197 (234)
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH--------HHHHHHH
Confidence            678899999999999999999999999999999998888888888888777654433        5565555

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.37  E-value=4e-11  Score=128.88  Aligned_cols=152  Identities=13%  Similarity=0.133  Sum_probs=126.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHH
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK----VIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~----Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      ...|..++..|++++|+..|.+++++. |+   +..+++++|.+|..+|++++    |+..|+++++++|+++.++..+|
T Consensus       216 ~~l~~~l~~~g~~~eA~~~~~~al~~~-p~---~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg  291 (656)
T PRK15174        216 GLAVDTLCAVGKYQEAIQTGESALARG-LD---GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYA  291 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            445778889999999999999999999 76   78999999999999999986    89999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHH
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV  167 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~  167 (401)
                      .++...|++++|+..++++++++|+++.+...++.++...++...+..        .|+.+.. .|............+.
T Consensus       292 ~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~--------~l~~al~~~P~~~~~~~~~a~al~  363 (656)
T PRK15174        292 DALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD--------EFVQLAREKGVTSKWNRYAAAALL  363 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHhCccchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988888755544        5666665 3443333444455666


Q ss_pred             Hhhhcchhh
Q psy4703         168 VLAREMSGA  176 (401)
Q Consensus       168 ~l~~~~~ga  176 (401)
                      ..++.+++.
T Consensus       364 ~~G~~deA~  372 (656)
T PRK15174        364 QAGKTSEAE  372 (656)
T ss_pred             HCCCHHHHH
Confidence            777754433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.37  E-value=1.5e-11  Score=107.03  Aligned_cols=116  Identities=11%  Similarity=0.061  Sum_probs=102.4

Q ss_pred             HHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703          29 LDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH  108 (401)
Q Consensus        29 i~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal  108 (401)
                      ...|+++++++ |+   .   ++++|.++...|+|++|+..|.+++.++|.+..+|+.+|.++..+|++++|+..|++++
T Consensus        13 ~~~~~~al~~~-p~---~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al   85 (144)
T PRK15359         13 EDILKQLLSVD-PE---T---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL   85 (144)
T ss_pred             HHHHHHHHHcC-HH---H---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45799999999 75   2   66799999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703         109 RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (401)
Q Consensus       109 ~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (401)
                      +++|+++.++..++.++..+++..++..        .|+.+.. .|.+.+..
T Consensus        86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~--------~~~~Al~~~p~~~~~~  129 (144)
T PRK15359         86 MLDASHPEPVYQTGVCLKMMGEPGLARE--------AFQTAIKMSYADASWS  129 (144)
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCCChHHH
Confidence            9999999999999999999998865544        6777777 44444443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.37  E-value=4.2e-11  Score=111.92  Aligned_cols=119  Identities=18%  Similarity=0.235  Sum_probs=107.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK--   82 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k--   82 (401)
                      .+..+..++..|..++..|+|++|+..|++++... |+.+....+++.+|.+|+..|++++|+..|+++++.+|+++.  
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            45678899999999999999999999999999999 875666788999999999999999999999999999998876  


Q ss_pred             -HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          83 -ALFRRCQAYEAI--------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        83 -A~~~~a~a~~~l--------g~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                       +++.+|.++..+        |++++|+..|++++..+|++......+..+
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~  158 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM  158 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence             799999999987        899999999999999999997766555433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.35  E-value=7.1e-10  Score=120.50  Aligned_cols=165  Identities=18%  Similarity=0.126  Sum_probs=130.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--------------------------------CcchHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE--------------------------------SHERATC   49 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~--------------------------------~~~~~~~   49 (401)
                      ++.+|.++..+...|..++..|+|++|+..|.++++.. |+                                .+....+
T Consensus        49 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  127 (899)
T TIGR02917        49 LQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLG-YPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAEL  127 (899)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHH
Confidence            45678888899999999999999999999999888776 32                                1334567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                      +..+|.+|+..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|.+..++..++.++...+
T Consensus       128 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  207 (899)
T TIGR02917       128 LALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG  207 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Confidence            78888999999999999999999999999999999999999999999999999999999999988888888888877777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhhhcchh
Q psy4703         130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG  175 (401)
Q Consensus       130 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g  175 (401)
                      +...+.        ..|+.+.. .|.+..........+...++.+.+
T Consensus       208 ~~~~A~--------~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A  246 (899)
T TIGR02917       208 NIELAL--------AAYRKAIALRPNNPAVLLALATILIEAGEFEEA  246 (899)
T ss_pred             CHHHHH--------HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            664443        36666666 555566666666666666665443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0547|consensus

Probab=99.35  E-value=6e-11  Score=118.23  Aligned_cols=135  Identities=12%  Similarity=0.157  Sum_probs=67.1

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      +|.....|..+|-.|....+-.+-...|.+|..++ |+   ++.+|+.||.+++-+++|++|+.+|+++++++|+++-+|
T Consensus       356 ~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~---n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~  431 (606)
T KOG0547|consen  356 DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PE---NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY  431 (606)
T ss_pred             CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CC---CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence            33333334444444444444444444444444444 33   444555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ..+|.+.+++++++++...|+.+.+-.|+.+++....+.+....++..++        .++|+.+.+
T Consensus       432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A--------~k~YD~ai~  490 (606)
T KOG0547|consen  432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA--------VKQYDKAIE  490 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH--------HHHHHHHHh
Confidence            55555555555555555555555555555555555555555444444333        335666666

>KOG1126|consensus

Probab=99.35  E-value=1.1e-11  Score=127.36  Aligned_cols=129  Identities=16%  Similarity=0.182  Sum_probs=63.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      |+++|..+-+|-..|-.+.....|+.|..+|+.||..+ |+   +..+|+.+|.+|+++++++.|.-.|.+|++++|.+.
T Consensus       448 iQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~r---hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns  523 (638)
T KOG1126|consen  448 IQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PR---HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS  523 (638)
T ss_pred             hccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-ch---hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch
Confidence            44444444444455555555555555555555555555 33   444555555555555555555555555555555554


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a  134 (401)
                      ..+...|.++.++|+.++|+..|++|+.+||.|+-.....+.++..+.+..++
T Consensus       524 vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea  576 (638)
T KOG1126|consen  524 VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA  576 (638)
T ss_pred             hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence            44455555555555555555555555555555544444444444444444433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.33  E-value=3.2e-11  Score=133.83  Aligned_cols=125  Identities=10%  Similarity=0.042  Sum_probs=85.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++.+|+ +..+...|..+.+.|++++|+..|.+++.++ |+   ++.++.++|.++...|++++|+..|.++++++|+++
T Consensus       603 L~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd---~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~  677 (987)
T PRK09782        603 LNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE-PN---NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP  677 (987)
T ss_pred             HHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            344564 6666677777777777777777777777777 55   666777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      .+++++|.++..+|++++|+..|+++++++|++..+....+.+.......
T Consensus       678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~  727 (987)
T PRK09782        678 ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNF  727 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHH
Confidence            77777777777777777777777777777777666666665555544433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.33  E-value=5e-11  Score=132.31  Aligned_cols=134  Identities=17%  Similarity=0.201  Sum_probs=91.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      +|.....+...+......|++++|+..|.++++++ |+    ..++.++|.++.++|++++|+..|.++++++|+++.++
T Consensus       572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~  646 (987)
T PRK09782        572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-PS----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ  646 (987)
T ss_pred             CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            34444344444444445577777777777777777 52    55677777777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .++|.++..+|++++|+..|+++++++|+++.++..++.++..+++...+..        +|++++.
T Consensus       647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~--------~l~~Al~  705 (987)
T PRK09782        647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH--------YARLVID  705 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHh
Confidence            7777777777777777777777777777777777777777777776644433        5666665

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.33  E-value=9.5e-11  Score=107.29  Aligned_cols=152  Identities=18%  Similarity=0.098  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      -+.+...+|..|+..|++..|...+++||+.+ |+   ...+|.-+|..|.+.|+.+.|-+.|++|+.++|++...+.+.
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY  109 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY  109 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence            36678899999999999999999999999999 77   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPT---NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~---~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~  163 (401)
                      |..++..|+|++|...|++|+. +|.   -...+++++-+....++...+        ..+|++++. .|.........+
T Consensus       110 G~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A--------~~~l~raL~~dp~~~~~~l~~a  180 (250)
T COG3063         110 GAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQA--------EEYLKRALELDPQFPPALLELA  180 (250)
T ss_pred             hHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhH--------HHHHHHHHHhCcCCChHHHHHH
Confidence            9999999999999999999987 454   456777888777777776544        448899988 455555556666


Q ss_pred             HHHHHhhhc
Q psy4703         164 NNLVVLARE  172 (401)
Q Consensus       164 ~~L~~l~~~  172 (401)
                      +.....+++
T Consensus       181 ~~~~~~~~y  189 (250)
T COG3063         181 RLHYKAGDY  189 (250)
T ss_pred             HHHHhcccc
Confidence            666665554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.32  E-value=5.2e-09  Score=112.68  Aligned_cols=116  Identities=15%  Similarity=0.082  Sum_probs=101.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      +..+|+++..+...|...+..|++++|+..|++++.++ |+   ++.++..+|.++...|++++|+..|+++++++|+++
T Consensus        69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~---~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~  144 (656)
T PRK15174         69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VC---QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS  144 (656)
T ss_pred             HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            45678888889999999999999999999999999999 76   788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      .++..+|.++..+|++++|+..+++++..+|+++.+...+
T Consensus       145 ~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~  184 (656)
T PRK15174        145 QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC  184 (656)
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999999999999998888899887776554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.32  E-value=4.2e-11  Score=107.21  Aligned_cols=111  Identities=30%  Similarity=0.466  Sum_probs=99.4

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      ..++..+..++..|..+...|++++|+.+|.+++.+. |+.+....++.++|.+|.++|+|++|+..+.+++.++|.+..
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            3456778889999999999999999999999999998 664445789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Q psy4703          83 ALFRRCQAYEAIGK--------------FEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        83 A~~~~a~a~~~lg~--------------~eeA~~~~~kal~l~P~~  114 (401)
                      ++..+|.++..+|+              +++|++.+++++.++|++
T Consensus       108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999999998              677777788888888776

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.31  E-value=7.2e-11  Score=126.60  Aligned_cols=136  Identities=7%  Similarity=-0.015  Sum_probs=126.7

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .-|+++++++..|......|.+++|...+..+++++ |+   +..++.+++.++.+++++++|+..+++++..+|+++.+
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~  156 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PD---SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE  156 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CC---cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence            457789999999999999999999999999999999 77   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ++.+|.++.++|+|++|+..|++++.-+|+++.++..++.+++..++...+..        .|+.+++
T Consensus       157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~--------~~~~a~~  216 (694)
T PRK15179        157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD--------VLQAGLD  216 (694)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHH
Confidence            99999999999999999999999999999999999999999999998876655        5555555

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.31  E-value=7.8e-11  Score=108.12  Aligned_cols=118  Identities=12%  Similarity=0.126  Sum_probs=108.5

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HH
Q psy4703          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY-EAIGK--FE   98 (401)
Q Consensus        22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~-~~lg~--~e   98 (401)
                      .++.++++..|.++++.+ |+   +...|.++|.+|..+|++++|+..|+++++++|+++.++..+|.++ ...|+  ++
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~---~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQ---NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence            567789999999999999 77   8999999999999999999999999999999999999999999985 78788  59


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        99 eA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      +|...++++++++|++..++..++..+...++..++..        +|+.+++
T Consensus       128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~--------~~~~aL~  172 (198)
T PRK10370        128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE--------LWQKVLD  172 (198)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH--------HHHHHHh
Confidence            99999999999999999999999999999888865544        7888887

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.29  E-value=1.1e-11  Score=93.42  Aligned_cols=67  Identities=27%  Similarity=0.505  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG-KFEEAYTDAKHIHRVEP  112 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg-~~eeA~~~~~kal~l~P  112 (401)
                      ++..|.++|.+++..|+|++|+.+|+++++++|+++.+++++|.+|..+| ++++|+.+|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46677777777777777777777777777777777777777777777777 67777777777777776

...

>KOG4642|consensus

Probab=99.29  E-value=2.9e-11  Score=110.90  Aligned_cols=116  Identities=27%  Similarity=0.349  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      ..++.+++.||.+|....|..||.+|.+||.++ |.   .+.+|.|+|.||+++++|+.+..+|.++++++|+.++++|.
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~n-P~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~f   83 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICIN-PT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYF   83 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcC-CC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHH
Confidence            357899999999999999999999999999999 76   88999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC---C--CCccHHHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVE---P--TNKAIQPVLSRLFA  126 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~---P--~~~~~~~~L~~l~~  126 (401)
                      +|++++....|++|+..++++..+-   |  .-..+...|..+..
T Consensus        84 lg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~  128 (284)
T KOG4642|consen   84 LGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK  128 (284)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence            9999999999999999999996652   2  22456666665544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.27  E-value=2.5e-10  Score=130.19  Aligned_cols=124  Identities=21%  Similarity=0.207  Sum_probs=109.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcch-----------HHHHHHHHHHHHHcCCHHHHHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER-----------ATCLKNRAAVYLKQNQNDKVIEDC   70 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~-----------~~~~~n~a~~y~klg~y~~Ai~~~   70 (401)
                      ++.+|+++..+...|..+++.|++++|+.+|+++++++ |+.+..           ......+|.++++.|++++|+..|
T Consensus       296 L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~  374 (1157)
T PRK11447        296 VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD-PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY  374 (1157)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            56789999999999999999999999999999999999 753211           112345688999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703          71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (401)
Q Consensus        71 ~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~  126 (401)
                      +++++++|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..++.
T Consensus       375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988877777653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.27  E-value=1.3e-09  Score=124.23  Aligned_cols=125  Identities=15%  Similarity=0.197  Sum_probs=98.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHH-------------------------------
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCL-------------------------------   50 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~-------------------------------   50 (401)
                      ++.+|+++.++...|..+...|++++|+.+|+++++++ |+   +..++                               
T Consensus       378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~---~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~  453 (1157)
T PRK11447        378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PG---NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID  453 (1157)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence            45678888888888888999999999999999998888 65   22222                               


Q ss_pred             -----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703          51 -----------KNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP  119 (401)
Q Consensus        51 -----------~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~  119 (401)
                                 ..+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++.+|+++.+..
T Consensus       454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~  533 (1157)
T PRK11447        454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVY  533 (1157)
T ss_pred             HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence                       234555667788889999999999999988888888999999999999999999998888888888777


Q ss_pred             HHHHHHHHHHH
Q psy4703         120 VLSRLFAIVTK  130 (401)
Q Consensus       120 ~L~~l~~~~~~  130 (401)
                      .++......++
T Consensus       534 a~al~l~~~~~  544 (1157)
T PRK11447        534 AYGLYLSGSDR  544 (1157)
T ss_pred             HHHHHHHhCCC
Confidence            66655444333

>KOG0376|consensus

Probab=99.26  E-value=7.9e-12  Score=124.78  Aligned_cols=120  Identities=28%  Similarity=0.424  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      .++.++++++.+|..+.|+.|+..|.+||+++ |+   .+.++.||+.+|++.++|..|+.++.+||+++|...++|+++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ld-pn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rr   78 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELD-PN---CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRR   78 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcC-Cc---ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeec
Confidence            47788999999999999999999999999999 87   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      |.+.+++++|.+|+.+|++...+.|+++.+...+..+.....+.
T Consensus        79 g~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~  122 (476)
T KOG0376|consen   79 GTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE  122 (476)
T ss_pred             cHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888887776664

>PLN02789 farnesyltranstransferase

Probab=99.26  E-value=1.6e-10  Score=113.55  Aligned_cols=124  Identities=15%  Similarity=0.107  Sum_probs=114.2

Q ss_pred             CccCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN--DKVIEDCSKSLEIV   77 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g-~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y--~~Ai~~~~kAL~ld   77 (401)
                      +|+.+|++..++..+|..+...| ++++|+.+++++++.+ |+   +..+|.+++.++.+++++  ++++..++++|+++
T Consensus        63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pk---nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d  138 (320)
T PLN02789         63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PK---NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD  138 (320)
T ss_pred             HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-Cc---chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence            36789999999999999999998 6899999999999999 76   889999999999999874  78899999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        78 P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      |.+..+|..||.++..+|+|++|+.++.++++++|+|..++...+.+...+
T Consensus       139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999888776554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.26  E-value=2.3e-10  Score=104.79  Aligned_cols=132  Identities=17%  Similarity=0.161  Sum_probs=121.8

Q ss_pred             CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--P   78 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--P   78 (401)
                      +|+.+|+...++.-++..|.+.|+.+.|-+.|++|+.++ |+   +..++.|.|.-+...|+|++|...|++|+..-  |
T Consensus        61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~---~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~  136 (250)
T COG3063          61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PN---NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYG  136 (250)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CC---ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCC
Confidence            367899999999999999999999999999999999999 77   99999999999999999999999999999852  4


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ..+..+-++|.|-++.|+++.|..+|+++++++|+++.....+.+.+...+++..+..
T Consensus       137 ~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         137 EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            5678999999999999999999999999999999999999999999888888765544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.25  E-value=1.6e-09  Score=108.47  Aligned_cols=164  Identities=12%  Similarity=0.074  Sum_probs=115.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~-~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      ++.+|+++..+...|..++..|++++|+..+++++... +.. .....++.++|.+|...|++++|+..|.++++.+|.+
T Consensus        62 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~  140 (389)
T PRK11788         62 LKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA  140 (389)
T ss_pred             HhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch
Confidence            56678888888888999999999999999988888754 221 1234677888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-----IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA  154 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~-----~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~  154 (401)
                      ..++..++.++...|++++|+..++++++.+|.+..     ....++.++...++..++..        +|+.+.. .|.
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--------~~~~al~~~p~  212 (389)
T PRK11788        141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA--------LLKKALAADPQ  212 (389)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH--------HHHHHHhHCcC
Confidence            888888888888888888888888888888776543     23345555555555543333        4555544 333


Q ss_pred             ChhHHHHHHHHHHHhhhcch
Q psy4703         155 PMDKRVTAVNNLVVLAREMS  174 (401)
Q Consensus       155 ~~~~~~~a~~~L~~l~~~~~  174 (401)
                      ........+..+...++.+.
T Consensus       213 ~~~~~~~la~~~~~~g~~~~  232 (389)
T PRK11788        213 CVRASILLGDLALAQGDYAA  232 (389)
T ss_pred             CHHHHHHHHHHHHHCCCHHH
Confidence            34444444455555555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=2.4e-10  Score=111.29  Aligned_cols=122  Identities=16%  Similarity=0.138  Sum_probs=106.9

Q ss_pred             cCCHHHHHHHHHHHHhhcCC-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy4703          22 QGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA  100 (401)
Q Consensus        22 ~g~y~eAi~~y~~Al~l~~p-~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA  100 (401)
                      .+..+.++..+.++|... | +++..+..|+++|.+|..+|++++|+.+|+++++++|+++.+|+.+|.++..+|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            456788999999999755 3 22346889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703         101 YTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus       101 ~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (401)
                      +..|+++++++|++..++..++.++...++..++..        .|+.++..
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~--------~~~~al~~  161 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD--------DLLAFYQD  161 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHh
Confidence            999999999999999999999999888877755544        66777663

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.24  E-value=4.6e-10  Score=112.36  Aligned_cols=124  Identities=16%  Similarity=0.145  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-----KA   83 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~-----kA   83 (401)
                      ...+...|..++..|++++|+..|.++++.. |.   ...++..++.++.+.|++++|+..+.++++.+|.+.     ..
T Consensus       107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  182 (389)
T PRK11788        107 LLALQELGQDYLKAGLLDRAEELFLQLVDEG-DF---AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF  182 (389)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cc---hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            4567778888888888888888888888877 54   677788888888888888888888888888877653     24


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      +..+|.++...|++++|+..|+++++.+|++..+...++.++...++..++..
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  235 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE  235 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            56778888888888888888888888888887777788887777777655544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.23  E-value=5.1e-11  Score=89.82  Aligned_cols=67  Identities=30%  Similarity=0.549  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVP   78 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~ldP   78 (401)
                      ++..+...|..++..|+|++|+.+|+++++++ |+   ++.+++++|.||+.+| ++++|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57899999999999999999999999999999 77   9999999999999999 79999999999999998

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.23  E-value=2.9e-10  Score=106.21  Aligned_cols=133  Identities=11%  Similarity=0.120  Sum_probs=113.9

Q ss_pred             cCChhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc--------CCHHHHHHHHH
Q psy4703           3 DNNMND---YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ--------NQNDKVIEDCS   71 (401)
Q Consensus         3 ~~~p~~---a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl--------g~y~~Ai~~~~   71 (401)
                      ..+|.+   ..++...|..++..|+|++|+..|+++++.. |+++....+++++|.+++..        |++++|+..++
T Consensus        61 ~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~  139 (235)
T TIGR03302        61 SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQ  139 (235)
T ss_pred             HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence            445544   3678999999999999999999999999999 87666667899999999987        88999999999


Q ss_pred             HHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHHHH
Q psy4703          72 KSLEIVPDDPKAL-----------------FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTKR  131 (401)
Q Consensus        72 kAL~ldP~~~kA~-----------------~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~---~~~~~L~~l~~~~~~~  131 (401)
                      +++..+|++..++                 +.+|..|+..|++++|+..|+++++..|+++   .++..++.++..+++.
T Consensus       140 ~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~  219 (235)
T TIGR03302       140 ELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK  219 (235)
T ss_pred             HHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence            9999999986542                 4678999999999999999999999988764   6788888888888887


Q ss_pred             HHHHH
Q psy4703         132 MQENE  136 (401)
Q Consensus       132 ~~a~~  136 (401)
                      .++..
T Consensus       220 ~~A~~  224 (235)
T TIGR03302       220 DLAQD  224 (235)
T ss_pred             HHHHH
Confidence            55544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.22  E-value=1.9e-10  Score=88.20  Aligned_cols=99  Identities=36%  Similarity=0.605  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a   90 (401)
                      .+...|..++..|++++|+..++++++.. |.   ...++..+|.++...+++++|+..+++++...|.+..+++.+|.+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence            47789999999999999999999999999 76   568899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          91 YEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        91 ~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                      +...|++++|...++++++.+|.
T Consensus        78 ~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          78 YYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHhHHHHHHHHHHHHccCCC
Confidence            99999999999999999998874

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.21  E-value=4.7e-11  Score=93.95  Aligned_cols=84  Identities=29%  Similarity=0.512  Sum_probs=75.3

Q ss_pred             HcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy4703          21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA  100 (401)
Q Consensus        21 ~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA  100 (401)
                      .+|+|++|+.+|+++++.+ |..+ +...++++|.||+++|+|++|+..+++ ++.+|.++..++.+|+++.++|+|++|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~-~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELD-PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHH-CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CCccHHHHHHHHHHHHHHC-CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            3689999999999999999 7533 677888899999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy4703         101 YTDAKHI  107 (401)
Q Consensus       101 ~~~~~ka  107 (401)
                      +..|+++
T Consensus        78 i~~l~~~   84 (84)
T PF12895_consen   78 IKALEKA   84 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            9999875

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.20  E-value=3.6e-10  Score=96.17  Aligned_cols=110  Identities=9%  Similarity=0.070  Sum_probs=100.3

Q ss_pred             HHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4703          30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (401)
Q Consensus        30 ~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~  109 (401)
                      ..|.+++..+ |+   +....+.+|.+++..|++++|+..+++++.++|.++.+++++|.++..+|++++|+..|++++.
T Consensus         4 ~~~~~~l~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   79 (135)
T TIGR02552         4 ATLKDLLGLD-SE---QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA   79 (135)
T ss_pred             hhHHHHHcCC-hh---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4688999999 76   7788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703         110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus       110 l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ++|.++..+..++.++...++..++..        +|+.+..
T Consensus        80 ~~p~~~~~~~~la~~~~~~g~~~~A~~--------~~~~al~  113 (135)
T TIGR02552        80 LDPDDPRPYFHAAECLLALGEPESALK--------ALDLAIE  113 (135)
T ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHH--------HHHHHHH
Confidence            999999999999999998888755544        6677766

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2002|consensus

Probab=99.18  E-value=6.3e-09  Score=110.99  Aligned_cols=126  Identities=22%  Similarity=0.233  Sum_probs=117.6

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-P   81 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-~   81 (401)
                      ..++.++.++...++.+|-.|+|..+...+..++... ...+..+..++++|.+|..+|+|++|..+|.++++.+|++ .
T Consensus       264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~  342 (1018)
T KOG2002|consen  264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV  342 (1018)
T ss_pred             hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc
Confidence            4578888999999999999999999999999999987 5556678889999999999999999999999999999988 8


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                      -.++++|+.|+..|++++|+.+|+++++..|++.+....|+.++...+
T Consensus       343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            889999999999999999999999999999999999999999998875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.18  E-value=6.5e-10  Score=98.95  Aligned_cols=107  Identities=24%  Similarity=0.266  Sum_probs=93.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      ..+..+...|..++..|+|++|+..|.+++.+. |++...+.++.++|.+|...|++++|+..|.+++.++|.+..+++.
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            347788999999999999999999999999998 6544466799999999999999999999999999999999999999


Q ss_pred             HHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCC
Q psy4703          87 RCQAYE-------AIGKFE-------EAYTDAKHIHRVEPTN  114 (401)
Q Consensus        87 ~a~a~~-------~lg~~e-------eA~~~~~kal~l~P~~  114 (401)
                      +|.++.       .+|+++       +|+..|++++..+|.+
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999999       777877       5556666677778765

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.18  E-value=1.9e-08  Score=110.18  Aligned_cols=124  Identities=10%  Similarity=0.111  Sum_probs=114.0

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .+|..+..+...|..+...|++++|+..|+++++++ |+   +..++..+|.++...|++++|+..++++++.+|+++. 
T Consensus        44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-  118 (765)
T PRK10049         44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQ---NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-  118 (765)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-
Confidence            356778889999999999999999999999999999 76   7888999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM  132 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~  132 (401)
                      ++.+|.++...|++++|+..|+++++++|+++.+...++.++...+...
T Consensus       119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049        119 LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence            9999999999999999999999999999999999988888776554443

>KOG1125|consensus

Probab=99.17  E-value=2.3e-10  Score=116.19  Aligned_cols=134  Identities=10%  Similarity=0.107  Sum_probs=126.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---------------------------------------
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---------------------------------------   42 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---------------------------------------   42 (401)
                      |..+|+++++|..+|......++=..||..+.+|++++ |+                                       
T Consensus       312 VkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~  390 (579)
T KOG1125|consen  312 VKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV  390 (579)
T ss_pred             HhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence            67899999999999999999999999999999999999 75                                       


Q ss_pred             ---------------------------------Cc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703          43 ---------------------------------SH--ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus        43 ---------------------------------~~--~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                                                       .+  .++.++..+|..|.-.|+|++|+.+|+.||..+|++...|.|+
T Consensus       391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL  470 (579)
T KOG1125|consen  391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL  470 (579)
T ss_pred             ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence                                             13  6889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      |.++..-.+.++|+..|++|+++.|+...++.+|+.....++.+.++.+
T Consensus       471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999876655

>KOG0553|consensus

Probab=99.15  E-value=3.8e-10  Score=107.00  Aligned_cols=108  Identities=18%  Similarity=0.317  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      .+.-+.+-|.-+++.++|.+|+..|++||+++|.++..|.+||.+|.+||.|+.|+++++.|+.+||....++..|+.++
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            45567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHH
Q psy4703         126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVT  161 (401)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (401)
                      ..+++...+..        .|+++++..++.+..+.
T Consensus       160 ~~~gk~~~A~~--------aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  160 LALGKYEEAIE--------AYKKALELDPDNESYKS  187 (304)
T ss_pred             HccCcHHHHHH--------HHHhhhccCCCcHHHHH
Confidence            99998865544        68999995555544433

>KOG1125|consensus

Probab=99.14  E-value=1.2e-10  Score=118.21  Aligned_cols=120  Identities=15%  Similarity=0.225  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      .+++...-+|..|.-.|+|+.|+.+|+.||+.. |+   +..+|..+|..+-.-.++.+||..|.+|+++.|.++.++|+
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN  503 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PN---DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN  503 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-Cc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence            567888899999999999999999999999999 87   99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC----------ccHHHHHHHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTN----------KAIQPVLSRLFAIVTK  130 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~----------~~~~~~L~~l~~~~~~  130 (401)
                      +|.+++.+|.|.+|+.+|-.||.+.+.+          ..++..|+.+...+++
T Consensus       504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~  557 (579)
T KOG1125|consen  504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR  557 (579)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999998762          1366666655544443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.13  E-value=1e-09  Score=96.38  Aligned_cols=106  Identities=14%  Similarity=0.095  Sum_probs=98.5

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      ..++.-+..+..|-.++..|+|++|...|+-....+ |.   +...+..+|.|+..+++|++|+..|..+..++++++..
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence            456677889999999999999999999999999999 66   78899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      .|+.|+||+.+|+.+.|..+|+.+++ .|.+
T Consensus       108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence            99999999999999999999999988 4554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.13  E-value=2.6e-10  Score=109.77  Aligned_cols=127  Identities=18%  Similarity=0.217  Sum_probs=94.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      +.++..+...|..+.+.|++++|+..|+++++++ |+   +..+...++.++...|+++++...+....+..|.++..+.
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~---~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PD---DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD  218 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH
Confidence            4567778888888888888888888888888888 76   7778888888888888888888888877777777878888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      .+|.++..+|++++|+..|++++..+|+|+.+...++.++...++..++..
T Consensus       219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred             HHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888888888888888888888888888888888888888888887765544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.11  E-value=1.7e-09  Score=100.80  Aligned_cols=129  Identities=14%  Similarity=0.170  Sum_probs=116.8

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .+|++...+..+|..++..|+|.+|+..+.++..+. |+   +..+|..+|.+|.+.|++++|-..|.+++++.|+.+..
T Consensus        95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~---d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~  170 (257)
T COG5010          95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PT---DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSI  170 (257)
T ss_pred             cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CC---ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchh
Confidence            467777788889999999999999999999999999 66   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      +.++|..|.-.|+++.|...+..+...-+.+..+..+|..+....++...++.
T Consensus       171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         171 ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence            99999999999999999999999988888899999999998888887765544

>KOG0550|consensus

Probab=99.10  E-value=7.9e-10  Score=108.46  Aligned_cols=145  Identities=14%  Similarity=0.214  Sum_probs=124.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---------cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---------HERATCLKNRAAVYLKQNQNDKVIEDCSK   72 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~---------~~~~~~~~n~a~~y~klg~y~~Ai~~~~k   72 (401)
                      +.+++.++++++-+|..++-.++.+.|+.+|++++.++ |++         +.....+.++|.-.++.|+|.+|-+.|+.
T Consensus       196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte  274 (486)
T KOG0550|consen  196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD-PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE  274 (486)
T ss_pred             HhcccchhHHHHhcccccccccchHHHHHHHhhhhccC-hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence            46788999999999999999999999999999999999 763         44556778889999999999999999999


Q ss_pred             HHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          73 SLEIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY  148 (401)
Q Consensus        73 AL~ldP~~----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~  148 (401)
                      +|.+||++    ++.|.+||.+...+|+.++|+.+++.++.+||....+...-++++..+++...+..        .|+.
T Consensus       275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~--------d~~~  346 (486)
T KOG0550|consen  275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE--------DYEK  346 (486)
T ss_pred             hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Confidence            99999976    66799999999999999999999999999999987777777888888877755433        4666


Q ss_pred             hhcCCCC
Q psy4703         149 VFDTSAP  155 (401)
Q Consensus       149 ~~~~~~~  155 (401)
                      ++....+
T Consensus       347 a~q~~~s  353 (486)
T KOG0550|consen  347 AMQLEKD  353 (486)
T ss_pred             HHhhccc
Confidence            6664433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.10  E-value=2.9e-09  Score=101.80  Aligned_cols=115  Identities=11%  Similarity=0.101  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q psy4703           9 YNKLKESGNSA-FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKAL   84 (401)
Q Consensus         9 a~~l~~~Gn~~-~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~   84 (401)
                      ....++.+..+ ++.|+|++|+..|+..++.. |+.+..+.+++.+|.+|+..|+|++|+..|.+++...|++   +.++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            46778888876 67899999999999999999 8867778999999999999999999999999999998874   7899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      +.+|.++..+|++++|+..|+++++..|++..+.....++
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            9999999999999999999999999999987766555443

>KOG1173|consensus

Probab=99.08  E-value=6.4e-09  Score=105.53  Aligned_cols=225  Identities=13%  Similarity=0.122  Sum_probs=172.9

Q ss_pred             CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      +++..|+.+..|+..|--|+.-|++.+|.++|.+|..++ |.   .+.+|...|..|.-.++.++|+.+|..|-++-|..
T Consensus       304 LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~---fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~  379 (611)
T KOG1173|consen  304 LVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PT---FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC  379 (611)
T ss_pred             HHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-cc---ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence            357789999999999999999999999999999999999 66   99999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCChhH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD--TSAPMDK  158 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~  158 (401)
                      ..-.+.+|.=|..++++.-|.+.|..|+.+.|+||-+...++.+....+...++..        +|+.++.  .....+.
T Consensus       380 hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~--------~f~~~l~~ik~~~~e~  451 (611)
T KOG1173|consen  380 HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALK--------YFQKALEVIKSVLNEK  451 (611)
T ss_pred             cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHH--------HHHHHHHHhhhccccc
Confidence            88889999999999999999999999999999999999999999988888876655        4554443  1111111


Q ss_pred             --HHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhcc-CchhH--HhhHHHHHHHHHHhcHHHHHHHHcCCChhHHHH
Q psy4703         159 --RVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCE-TNEEI--YLGEEDFITSIIKQGVDILKRLYMSKNENIRVR  233 (401)
Q Consensus       159 --~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~-~~~e~--~lA~e~fi~~i~~~gv~~Lk~l~~s~~d~i~~r  233 (401)
                        ......+|.-..|.   ..+  .++++....+.+.+. ++.+.  .++|-..+.+..+..++.+-+-+--+++.+.++
T Consensus       452 ~~w~p~~~NLGH~~Rk---l~~--~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~  526 (611)
T KOG1173|consen  452 IFWEPTLNNLGHAYRK---LNK--YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS  526 (611)
T ss_pred             cchhHHHHhHHHHHHH---Hhh--HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence              11222222221111   111  234455555555532 44444  455666668888889999988777777777777


Q ss_pred             HHHhhhhcc
Q psy4703         234 ALVGLCKLG  242 (401)
Q Consensus       234 alvgLckl~  242 (401)
                      .+.++|--.
T Consensus       527 ~lL~~aie~  535 (611)
T KOG1173|consen  527 ELLKLAIED  535 (611)
T ss_pred             HHHHHHHHh
Confidence            787776443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.07  E-value=4.7e-10  Score=83.60  Aligned_cols=64  Identities=22%  Similarity=0.359  Sum_probs=50.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q psy4703          52 NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (401)
Q Consensus        52 n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~  115 (401)
                      .+|..+++.|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5677788888888888888888888888888888888888888888888888888888888764

>PLN02789 farnesyltranstransferase

Probab=99.07  E-value=9.9e-09  Score=100.92  Aligned_cols=148  Identities=9%  Similarity=0.005  Sum_probs=121.1

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .++..+++-..-..+...+++++|+..++++|+++ |+   +..+|..|+.++..++ ++++++..++++++.+|++..+
T Consensus        33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa  108 (320)
T PLN02789         33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLN-PG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI  108 (320)
T ss_pred             CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-ch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH
Confidence            34444554444445677889999999999999999 76   9999999999999999 6899999999999999999999


Q ss_pred             HHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHH
Q psy4703          84 LFRRCQAYEAIGKF--EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV  160 (401)
Q Consensus        84 ~~~~a~a~~~lg~~--eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (401)
                      |+.|+.++.++|+.  ++++..++++++++|+|-.++...+-+...++...++        .+++..++. .+.+.....
T Consensus       109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee--------L~~~~~~I~~d~~N~sAW~  180 (320)
T PLN02789        109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE--------LEYCHQLLEEDVRNNSAWN  180 (320)
T ss_pred             hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH--------HHHHHHHHHHCCCchhHHH
Confidence            99999999999984  7889999999999999999999999998888776443        336667766 444444444


Q ss_pred             HHHH
Q psy4703         161 TAVN  164 (401)
Q Consensus       161 ~a~~  164 (401)
                      .+..
T Consensus       181 ~R~~  184 (320)
T PLN02789        181 QRYF  184 (320)
T ss_pred             HHHH
Confidence            4443

>KOG2076|consensus

Probab=99.07  E-value=9.6e-09  Score=108.94  Aligned_cols=132  Identities=17%  Similarity=0.214  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      ....+..+||.+|.+|++++|.+.+.++|+.+ |.   ++.+|+.+|.+|..+|+.++|+...-.|-.++|.+...|.++
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l  213 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL  213 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-cc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            47788999999999999999999999999999 76   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      +....++|.+++|.-+|.+|++.+|.+-.....-..++..+++..++..        .|..++.
T Consensus       214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~--------~f~~l~~  269 (895)
T KOG2076|consen  214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME--------TFLQLLQ  269 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH--------HHHHHHh
Confidence            9999999999999999999999999998888888888888888865544        5666666

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.07  E-value=2.6e-09  Score=102.81  Aligned_cols=160  Identities=19%  Similarity=0.248  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      +...+......+...|+++++...+.++.... + .+.++.+|..+|.++.+.|++++|+.+++++++++|+++.++..+
T Consensus       109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l  186 (280)
T PF13429_consen  109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-A-APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNAL  186 (280)
T ss_dssp             ---------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            34455566677888999999999999977644 2 234788899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL  166 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L  166 (401)
                      +.++...|+++++...++......|+|+..+..++.++..+++..++..        +|+.+.. .|.+.......+..|
T Consensus       187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~--------~~~~~~~~~p~d~~~~~~~a~~l  258 (280)
T PF13429_consen  187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE--------YLEKALKLNPDDPLWLLAYADAL  258 (280)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH--------HHHHHHHHSTT-HHHHHHHHHHH
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc--------ccccccccccccccccccccccc
Confidence            9999999999999888888888889999999999999999988755544        7777777 667777777777778


Q ss_pred             HHhhhcchhhH
Q psy4703         167 VVLAREMSGAE  177 (401)
Q Consensus       167 ~~l~~~~~gae  177 (401)
                      ...|+.+.+..
T Consensus       259 ~~~g~~~~A~~  269 (280)
T PF13429_consen  259 EQAGRKDEALR  269 (280)
T ss_dssp             T----------
T ss_pred             ccccccccccc
Confidence            88777655443

>KOG1173|consensus

Probab=99.06  E-value=9.1e-10  Score=111.58  Aligned_cols=126  Identities=24%  Similarity=0.306  Sum_probs=113.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP   78 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~---p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP   78 (401)
                      +.+.|.++-.+.+.|..+|..+.|.+|+.+|+.++...+   +..+.....+.|+|.+|.+++.|++||.+++++|.+.|
T Consensus       407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~  486 (611)
T KOG1173|consen  407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP  486 (611)
T ss_pred             HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999995442   23334677899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      .++..|-..|-+|..+|+++.|+..|.++|.++|+|..+...|+.+.+.
T Consensus       487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998888888755443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.04  E-value=1e-08  Score=95.73  Aligned_cols=159  Identities=13%  Similarity=0.141  Sum_probs=134.3

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      ..+|++... ....+.+...|+-+.++.+..++..-. |.   +..+..-.|...+..|+|..|+..+.++..++|++++
T Consensus        61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~---d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~  135 (257)
T COG5010          61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PK---DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE  135 (257)
T ss_pred             hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cc---cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh
Confidence            457888888 788889999999999888888877777 54   6667777999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (401)
                      +|.-+|.+|.++|++++|...|.+++++.|+++.+..+++-.+...+++..+..        ++..+.. .+.+...+..
T Consensus       136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~--------lll~a~l~~~ad~~v~~N  207 (257)
T COG5010         136 AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET--------LLLPAYLSPAADSRVRQN  207 (257)
T ss_pred             hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH--------HHHHHHhCCCCchHHHHH
Confidence            999999999999999999999999999999999999999999999888866555        4555555 4446666666


Q ss_pred             HHHHHHHhhhcch
Q psy4703         162 AVNNLVVLAREMS  174 (401)
Q Consensus       162 a~~~L~~l~~~~~  174 (401)
                      .+..+...++.+.
T Consensus       208 LAl~~~~~g~~~~  220 (257)
T COG5010         208 LALVVGLQGDFRE  220 (257)
T ss_pred             HHHHHhhcCChHH
Confidence            6666666666543

>KOG2003|consensus

Probab=99.02  E-value=3.5e-09  Score=104.84  Aligned_cols=164  Identities=19%  Similarity=0.210  Sum_probs=133.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      +.=++.++-++||..|..|+++.|.+.|.+|+.-+ ..   -..+++|+|..+-.+|+.++|+.+|-+.-.+--+++..+
T Consensus       486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd-as---c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl  561 (840)
T KOG2003|consen  486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND-AS---CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL  561 (840)
T ss_pred             cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc-hH---HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH
Confidence            33457788899999999999999999999999988 43   778999999999999999999999999888878899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH--------------------------HH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE--------------------------QL  138 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~--------------------------~~  138 (401)
                      +.++.+|.-+.+..+|++.|-++..+-|++|.+...|+.++...+++.++-.                          ++
T Consensus       562 ~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf  641 (840)
T KOG2003|consen  562 VQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF  641 (840)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999999999999999999988777665432                          22


Q ss_pred             HHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhhhc
Q psy4703         139 QNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLARE  172 (401)
Q Consensus       139 ~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~  172 (401)
                      ..+..++|+++.- .|.........+.|+-..|.+
T Consensus       642 ~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny  676 (840)
T KOG2003|consen  642 SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY  676 (840)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence            2344555555544 444444445555555555554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=7e-09  Score=98.87  Aligned_cols=119  Identities=19%  Similarity=0.198  Sum_probs=108.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVP   78 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg---~y~~Ai~~~~kAL~ldP   78 (401)
                      ++.||++++.|...|..|+..|++..|...|.+|+++. |+   ++..+..+|.+++...   .-.++...+++++.+||
T Consensus       149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~  224 (287)
T COG4235         149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GD---NPEILLGLAEALYYQAGQQMTAKARALLRQALALDP  224 (287)
T ss_pred             HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence            46799999999999999999999999999999999999 76   8889998998887654   47889999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      .++.+++.+|..++..|+|.+|+..++..+...|.+..-...+.+.
T Consensus       225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            9999999999999999999999999999999999887666655443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.00  E-value=7.3e-09  Score=111.29  Aligned_cols=109  Identities=8%  Similarity=-0.094  Sum_probs=104.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++..|+++.+..+.+..+.+.+++++|+..+++++..+ |+   ++..++++|.++.++|+|++|+..|++++..+|+++
T Consensus       113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~---~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~  188 (694)
T PRK15179        113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SS---SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFE  188 (694)
T ss_pred             HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH
Confidence            57889999999999999999999999999999999999 77   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      .++..+|.++..+|+.++|...|+++++....-
T Consensus       189 ~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        189 NGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            999999999999999999999999999886543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.00  E-value=9.8e-09  Score=89.79  Aligned_cols=92  Identities=8%  Similarity=-0.075  Sum_probs=86.5

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      ......+.+|..++..|++++|...|+.++.+||.++..|+++|.++..+|+|++|+..|.+++.++|+|+.....++.+
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c  112 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            35667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4703         125 FAIVTKRMQENE  136 (401)
Q Consensus       125 ~~~~~~~~~a~~  136 (401)
                      +-.+++...+..
T Consensus       113 ~L~lG~~~~A~~  124 (157)
T PRK15363        113 YLACDNVCYAIK  124 (157)
T ss_pred             HHHcCCHHHHHH
Confidence            999999866655

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.97  E-value=3.4e-08  Score=108.25  Aligned_cols=150  Identities=14%  Similarity=0.134  Sum_probs=126.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      +|-+....-.--.++...|++++|+..|.+++..+ |.   .+.++.++|.++...|++++|+..|+++++++|.++.++
T Consensus        11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~---~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~   86 (765)
T PRK10049         11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QL---PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ   86 (765)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            34555666677788899999999999999999878 54   788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~  163 (401)
                      +.+|.++...|++++|+..++++++.+|++.. +..++.++...++...+..        .|+.++. .|.+.+.....+
T Consensus        87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~--------~l~~al~~~P~~~~~~~~la  157 (765)
T PRK10049         87 RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR--------AMTQALPRAPQTQQYPTEYV  157 (765)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH--------HHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999999999999999 8899988888777755444        6777777 455544444444


Q ss_pred             HHHH
Q psy4703         164 NNLV  167 (401)
Q Consensus       164 ~~L~  167 (401)
                      ..+.
T Consensus       158 ~~l~  161 (765)
T PRK10049        158 QALR  161 (765)
T ss_pred             HHHH
Confidence            4443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.96  E-value=2.1e-08  Score=89.21  Aligned_cols=133  Identities=9%  Similarity=0.080  Sum_probs=105.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q psy4703          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYE   92 (401)
Q Consensus        16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~   92 (401)
                      .+.+|-..+|..+...+...++.. +. .....+++++|.++..+|+|++|+..|.+++.+.|+.   +.+++++|.++.
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~   83 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTT-SG-EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT   83 (168)
T ss_pred             ccccccccccccchhhhhHhccCC-ch-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence            456677777888888887766665 43 3468889999999999999999999999999997763   458999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Q psy4703          93 AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT-------KRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        93 ~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~-------~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .+|++++|+..|++++.++|.+...+..++.++..++       +...+...+ .+...+|+.+..
T Consensus        84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~-~~a~~~~~~a~~  148 (168)
T CHL00033         84 SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF-DQAAEYWKQAIA  148 (168)
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH-HHHHHHHHHHHH
Confidence            9999999999999999999999998888888888444       333333322 334456666665

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.96  E-value=1.4e-07  Score=86.93  Aligned_cols=117  Identities=21%  Similarity=0.288  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KA   83 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~---kA   83 (401)
                      .+++.++..|..++..|+|.+|+..|++.+... |..+....+.+.+|.+|++.|+|.+|+..+++-++..|+++   .+
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            357889999999999999999999999999999 88888999999999999999999999999999999999874   58


Q ss_pred             HHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          84 LFRRCQAYEAIGK-----------FEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        84 ~~~~a~a~~~lg~-----------~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      ++.+|.+++.+.+           ..+|+..|+..+...|+++-+.....++
T Consensus        82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l  133 (203)
T PF13525_consen   82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL  133 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence            9999999877643           4589999999999999997665544433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.96  E-value=1.5e-07  Score=89.09  Aligned_cols=115  Identities=11%  Similarity=0.121  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKA   83 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA   83 (401)
                      .+++.++..|..++..|+|++|+..|++++... |..+....+.+++|.+|++.++|++|+..+++.++.+|++   +.+
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            367788999999999999999999999999999 8877777888999999999999999999999999999977   567


Q ss_pred             HHHHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703          84 LFRRCQAYEAIGK------------------FEEAYTDAKHIHRVEPTNKAIQPVLS  122 (401)
Q Consensus        84 ~~~~a~a~~~lg~------------------~eeA~~~~~kal~l~P~~~~~~~~L~  122 (401)
                      +|.+|.++..+++                  -.+|+..|++.++..|+++-+...-.
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~  165 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATK  165 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence            9999999876651                  25788999999999999865444433

>KOG3060|consensus

Probab=98.95  E-value=1.3e-07  Score=87.98  Aligned_cols=140  Identities=16%  Similarity=0.187  Sum_probs=123.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      |++....+-.|..+-..|+|++|+++|+..++-+ |+   +...+...-.+...+|+.-+||+....-++..+.|..||.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt---~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~  158 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PT---DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWH  158 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHH
Confidence            7777788889999999999999999999999999 76   8888887777788899999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA  154 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (401)
                      .++.+|..+|+|+.|.-+|++.+-+.|.++.....++.+..-++.....     .....+|.+++...+
T Consensus       159 eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~-----~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  159 ELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL-----ELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHhCh
Confidence            9999999999999999999999999999999999999988877764322     235668888888443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.93  E-value=3.1e-08  Score=85.22  Aligned_cols=112  Identities=18%  Similarity=0.258  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KAL   84 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~---kA~   84 (401)
                      .+..++..|...++.|+|.+|++.|+...... |..+....+...++-+|++.++|++|+..+++-|+++|.++   -|+
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            46789999999999999999999999999999 87788889999999999999999999999999999999885   479


Q ss_pred             HHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCccHHHH
Q psy4703          85 FRRCQAYEAIGK---------------FEEAYTDAKHIHRVEPTNKAIQPV  120 (401)
Q Consensus        85 ~~~a~a~~~lg~---------------~eeA~~~~~kal~l~P~~~~~~~~  120 (401)
                      |.+|.+++.+..               ...|+.+|++.++..|+++-+...
T Consensus        88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            999999999987               899999999999999998765543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.93  E-value=6.6e-09  Score=77.32  Aligned_cols=65  Identities=23%  Similarity=0.446  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      +.+|..++..|+|++|+..|+++++.. |+   +..+++.+|.+++.+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQD-PD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCS-TT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            357999999999999999999999999 77   999999999999999999999999999999999875

>KOG1840|consensus

Probab=98.91  E-value=2.3e-07  Score=95.87  Aligned_cols=253  Identities=16%  Similarity=0.181  Sum_probs=156.0

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l---   76 (401)
                      ..|.........|..|+.+|+|+.|+..+.+|+++-.    -.++.......++|..|+.+++|.+|+..|++|+.+   
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4577777888899999999999999999999999810    012447777778999999999999999999999987   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCccHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy4703          77 -----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE-----PTNKAIQPVLS---RLFAIVTKRMQENEQLQNKVH  143 (401)
Q Consensus        77 -----dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~-----P~~~~~~~~L~---~l~~~~~~~~~a~~~~~~~~~  143 (401)
                           +|.-+.++.++|.+|.+.|+|++|..++++|++|-     .+.+.+...+.   .+...+.+...+...+ .+..
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~-q~al  352 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL-QKAL  352 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH-HHHH
Confidence                 34556789999999999999999999999999873     33444544444   4444444444444422 2222


Q ss_pred             HHHHHhhc-CC-CChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhH----HHHH--------H
Q psy4703         144 NMFKYVFD-TS-APMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGE----EDFI--------T  209 (401)
Q Consensus       144 ~~~~~~~~-~~-~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~----e~fi--------~  209 (401)
                      ..+..++. .+ .....+...+..+...|+++++.+.. + .++....+... ..+..+-+.+    ..+.        .
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~-k-~ai~~~~~~~~-~~~~~~~~~l~~la~~~~~~k~~~~a~  429 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY-K-KAIQILRELLG-KKDYGVGKPLNQLAEAYEELKKYEEAE  429 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH-H-HHHHHHHhccc-CcChhhhHHHHHHHHHHHHhcccchHH
Confidence            23333333 22 22334455556667777765554443 2 23333333322 1223321111    1111        2


Q ss_pred             HHHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhh
Q psy4703         210 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFL  270 (401)
Q Consensus       210 ~i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l  270 (401)
                      .......+|+ +....+.+.+ .-..-+||++...-|...        ...++++.+-+|-
T Consensus       430 ~l~~~~~~i~-~~~g~~~~~~-~~~~~nL~~~Y~~~g~~e--------~a~~~~~~~~~~~  480 (508)
T KOG1840|consen  430 QLFEEAKDIM-KLCGPDHPDV-TYTYLNLAALYRAQGNYE--------AAEELEEKVLNAR  480 (508)
T ss_pred             HHHHHHHHHH-HHhCCCCCch-HHHHHHHHHHHHHcccHH--------HHHHHHHHHHHHH
Confidence            2345556677 5555333322 134557777776655332        2456665555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.91  E-value=6.5e-09  Score=79.02  Aligned_cols=69  Identities=25%  Similarity=0.528  Sum_probs=56.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703          54 AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (401)
Q Consensus        54 a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~  122 (401)
                      ..+|++.++|++|+.++++++.++|+++.+++.+|.++..+|+|++|+.+|+++++.+|+++.+.....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            457788888888888888888888888888888888888888888888888888888888776655544

>KOG4555|consensus

Probab=98.89  E-value=7.8e-08  Score=81.01  Aligned_cols=102  Identities=25%  Similarity=0.383  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKA   83 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~----~kA   83 (401)
                      .+..+-.+|..+...|+.+.|++.|.++|.+. |.   ++.+|.|+|.++.-.|+-++|+.+.++|+++....    ..+
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~-P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa  117 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLA-PE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA  117 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhc-cc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence            34566778999999999999999999999999 76   99999999999999999999999999999997654    457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                      |..||.+|..+|+-+.|..+|+.+-++-..
T Consensus       118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  118 FVQRGLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence            999999999999999999999999888644

>KOG1840|consensus

Probab=98.89  E-value=2.4e-07  Score=95.78  Aligned_cols=192  Identities=21%  Similarity=0.289  Sum_probs=136.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV---   77 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld---   77 (401)
                      +|.-+..+...|..|...++|.+|+..|.+|+.+-.    +++|..+.++.|+|..|.+.|+|++|..+|++|+++-   
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~  316 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL  316 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence            455566777899999999999999999999998753    5678899999999999999999999999999999873   


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          78 -----PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE-----PTN---KAIQPVLSRLFAIVTKRMQENEQLQNKVHN  144 (401)
Q Consensus        78 -----P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~-----P~~---~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~  144 (401)
                           |.-...+...+.++..++++++|+..+++++++-     +++   ..+...|+.++..++++.++..-+ +++..
T Consensus       317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~-k~ai~  395 (508)
T KOG1840|consen  317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY-KKAIQ  395 (508)
T ss_pred             hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH-HHHHH
Confidence                 3345678899999999999999999999999872     223   456778888888888887776633 33333


Q ss_pred             HHHHhhc-CCCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhH
Q psy4703         145 MFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEI  200 (401)
Q Consensus       145 ~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~  200 (401)
                      +.+.... .......-...+............++++|.+  -..|++.+. ...|++
T Consensus       396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~--~~~i~~~~g-~~~~~~  449 (508)
T KOG1840|consen  396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE--AKDIMKLCG-PDHPDV  449 (508)
T ss_pred             HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH--HHHHHHHhC-CCCCch
Confidence            4444433 1222222233333333334434456666555  222335554 445666

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.87  E-value=1.6e-07  Score=102.82  Aligned_cols=140  Identities=13%  Similarity=0.076  Sum_probs=112.0

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      ..|..+...+..+...++.|+|+.|+..|.++++.+ |.   ++....-++.++...|++++|+..|++++.-+|....+
T Consensus        29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~---~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~  104 (822)
T PRK14574         29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PL---QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRG  104 (822)
T ss_pred             cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-cc---chhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHH
Confidence            568889999999999999999999999999999999 76   43222278888889999999999999999444455555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP  155 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  155 (401)
                      +...|.++..+|+|++|+..|+++++.+|+++.+...+..++...++..+        +.+.++.+....+.
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e--------Al~~l~~l~~~dp~  168 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV--------VLKQATELAERDPT  168 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH--------HHHHHHHhcccCcc
Confidence            55558899999999999999999999999999988877666666555433        33456666654333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.87  E-value=7.2e-08  Score=96.79  Aligned_cols=127  Identities=18%  Similarity=0.218  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      |......+..+...+..|++++|...++..+... |+   ++.++..++.++++.++.++|++.+.+++.++|+.+...+
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~---N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~  378 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PD---NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQL  378 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHH
Confidence            4566788899999999999999999999999988 77   8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ++|++|++.|++.+|+..+++.+.-+|+|+..|..|++.+..++...++..
T Consensus       379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~  429 (484)
T COG4783         379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL  429 (484)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence            999999999999999999999999999999999999999999888766544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.87  E-value=4.4e-08  Score=97.96  Aligned_cols=104  Identities=13%  Similarity=0.152  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                      +...|..++..|+|++|+..|+++|+++|+++.+|+.+|.+|..+|+|++|+.+++++++++|++..++..++.++..++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            56679999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHH
Q psy4703         130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (401)
Q Consensus       130 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (401)
                      +...+..        .|+.++. .|.+......
T Consensus        85 ~~~eA~~--------~~~~al~l~P~~~~~~~~  109 (356)
T PLN03088         85 EYQTAKA--------ALEKGASLAPGDSRFTKL  109 (356)
T ss_pred             CHHHHHH--------HHHHHHHhCCCCHHHHHH
Confidence            8865544        6777777 4444443333

>KOG2076|consensus

Probab=98.86  E-value=2e-07  Score=99.10  Aligned_cols=108  Identities=17%  Similarity=0.257  Sum_probs=104.4

Q ss_pred             CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      +|..+|..+.+|+..|.+|-.+|+.+.++.++..|-.++ |.   +...|..++....++|++++|.-+|++||+.+|.+
T Consensus       165 vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~---d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n  240 (895)
T KOG2076|consen  165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PK---DYELWKRLADLSEQLGNINQARYCYSRAIQANPSN  240 (895)
T ss_pred             HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence            367899999999999999999999999999999999999 76   66999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP  112 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P  112 (401)
                      .+.+++++..|.++|++..|...|.+++.++|
T Consensus       241 ~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  241 WELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999

>KOG2002|consensus

Probab=98.86  E-value=1.5e-07  Score=100.62  Aligned_cols=171  Identities=13%  Similarity=0.123  Sum_probs=134.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++..|+++-.+..++...|.+|+|..|+.+|.+++.++ |.  ..+.....+|.|+.++++.+.|+..+++++++||.++
T Consensus       157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~in-p~--~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v  233 (1018)
T KOG2002|consen  157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRIN-PA--CKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV  233 (1018)
T ss_pred             HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcC-cc--cCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhH
Confidence            46789999999999999999999999999999999999 64  3556777899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhH
Q psy4703          82 KALFRRCQAYEAIG---KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDK  158 (401)
Q Consensus        82 kA~~~~a~a~~~lg---~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  158 (401)
                      .++..+|.+-+...   .|..++..+.++..++|.||.+...|+.-+...+++.....-.    ..++......+...+.
T Consensus       234 ~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la----~~ai~~t~~~~~~aes  309 (1018)
T KOG2002|consen  234 SALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLA----EHAIKNTENKSIKAES  309 (1018)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHH----HHHHHhhhhhHHHHHH
Confidence            99999998877655   4788999999999999999999999999888888775543311    1112222112233344


Q ss_pred             HHHHHHHHHHhhhcchhhHHH
Q psy4703         159 RVTAVNNLVVLAREMSGAEML  179 (401)
Q Consensus       159 ~~~a~~~L~~l~~~~~gae~~  179 (401)
                      -...+++...+|+++.+-..+
T Consensus       310 ~Y~~gRs~Ha~Gd~ekA~~yY  330 (1018)
T KOG2002|consen  310 FYQLGRSYHAQGDFEKAFKYY  330 (1018)
T ss_pred             HHHHHHHHHhhccHHHHHHHH
Confidence            566667777777765443333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.86  E-value=5.6e-08  Score=80.01  Aligned_cols=98  Identities=17%  Similarity=0.211  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---ccHHHH
Q psy4703          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPV  120 (401)
Q Consensus        47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~---~~~~~~  120 (401)
                      +..++.+|..+++.|+|++|+..|.+++..+|++   +.+++.+|.++...|++++|+..|++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3578999999999999999999999999999877   6799999999999999999999999999999986   456777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703         121 LSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus       121 L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (401)
                      ++.++...++...+        ..++..+...
T Consensus        82 ~~~~~~~~~~~~~A--------~~~~~~~~~~  105 (119)
T TIGR02795        82 LGMSLQELGDKEKA--------KATLQQVIKR  105 (119)
T ss_pred             HHHHHHHhCChHHH--------HHHHHHHHHH
Confidence            77777766665433        3466666663

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.85  E-value=8.2e-08  Score=73.29  Aligned_cols=87  Identities=28%  Similarity=0.391  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      +++++|.+++..|++++|+..+.++++..|.+..+++.+|.++...|++++|+..|++++.+.|.+..+...++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999998888888888777


Q ss_pred             HHHHHHH
Q psy4703         129 TKRMQEN  135 (401)
Q Consensus       129 ~~~~~a~  135 (401)
                      ++...+.
T Consensus        82 ~~~~~a~   88 (100)
T cd00189          82 GKYEEAL   88 (100)
T ss_pred             HhHHHHH
Confidence            7764443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.84  E-value=9.2e-08  Score=85.51  Aligned_cols=90  Identities=10%  Similarity=0.173  Sum_probs=80.7

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~  120 (401)
                      +..+.+++++|..+...|++++|+.+|++++++.|+.   ..+++.+|.++..+|++++|+..|+++++++|++......
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            5578889999999999999999999999999987754   5789999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHH
Q psy4703         121 LSRLFAIVTKRMQ  133 (401)
Q Consensus       121 L~~l~~~~~~~~~  133 (401)
                      ++.++...++...
T Consensus       112 lg~~~~~~g~~~~  124 (172)
T PRK02603        112 IAVIYHKRGEKAE  124 (172)
T ss_pred             HHHHHHHcCChHh
Confidence            8888877665433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.83  E-value=2.9e-08  Score=86.29  Aligned_cols=131  Identities=19%  Similarity=0.156  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKA   83 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA   83 (401)
                      ..+...+......+..+++..+...+++.+.-. |+.+....+.+.+|.+++..|+|++|+..|+.++...|+.   ..+
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a   87 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA   87 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            346667778888888999999988899999888 7756677888889999999999999999999999987654   458


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQ  139 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~  139 (401)
                      .+++|.++..+|+|++|+..++. +.-.+-.+.+...++.++...++..++...+.
T Consensus        88 ~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen   88 RLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            88999999999999999999866 33344456788888999999888888877554

>TIGR00540 hemY_coli hemY protein

Probab=98.82  E-value=3.4e-06  Score=85.85  Aligned_cols=236  Identities=12%  Similarity=0.104  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-KALFR   86 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~-kA~~~   86 (401)
                      .+......|...+..|+|+.|.....++.+.. |+   ....+...|.++..+|+++.|..++.++.+..|++. .+...
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~-~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~  158 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHA-AE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIA  158 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHH
Confidence            45566788999999999999999999999988 65   566677789999999999999999999999999875 45666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhH----HHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT-SAPMDK----RVT  161 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~----~~~  161 (401)
                      ++.++...|+++.|...+++.++..|+++.+...++.++...++...+..        .+..+... ..+...    ...
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~--------~l~~l~k~~~~~~~~~~~l~~~  230 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD--------IIDNMAKAGLFDDEEFADLEQK  230 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH--------HHHHHHHcCCCCHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999888865544        45555542 111111    112


Q ss_pred             HHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhcc-----CchhHHhhHHHHH--HHHHHhcHHHHHHHHcCCChhHHH--
Q psy4703         162 AVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCE-----TNEEIYLGEEDFI--TSIIKQGVDILKRLYMSKNENIRV--  232 (401)
Q Consensus       162 a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~-----~~~e~~lA~e~fi--~~i~~~gv~~Lk~l~~s~~d~i~~--  232 (401)
                      +...++..+..+         .+...+..+.+..     +++++..++-...  .+-.+.....|.+.++..++....  
T Consensus       231 a~~~~l~~~~~~---------~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~  301 (409)
T TIGR00540       231 AEIGLLDEAMAD---------EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL  301 (409)
T ss_pred             HHHHHHHHHHHh---------cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh
Confidence            222222222211         2233333333311     2556655553333  334677788898888854444321  


Q ss_pred             HHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCc
Q psy4703         233 RALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDP  277 (401)
Q Consensus       233 ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~  277 (401)
                      ..+...-.+.+             +...++.+.+.+|+.....++
T Consensus       302 ~~l~~~~~l~~-------------~~~~~~~~~~e~~lk~~p~~~  333 (409)
T TIGR00540       302 PLCLPIPRLKP-------------EDNEKLEKLIEKQAKNVDDKP  333 (409)
T ss_pred             HHHHHhhhcCC-------------CChHHHHHHHHHHHHhCCCCh
Confidence            12222222221             122467788888887544444

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.81  E-value=1.3e-06  Score=88.63  Aligned_cols=123  Identities=12%  Similarity=0.119  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNR-AAVYLKQNQNDKVIEDCSKSLEIVPDDPKA-LF   85 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~-a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA-~~   85 (401)
                      .+......|...+..|+|+.|.....++-+.. +    .+.+++.+ +.+..+.|+++.|..++.++.+.+|++..+ ..
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-~----~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l  157 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHA-E----QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEI  157 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc-c----chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence            45566778888888888888886666544432 1    34454555 444478888888888888888888877543 34


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN  135 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~  135 (401)
                      ..+.++...|++++|...+++..+.+|+++.+...+..++...++...+.
T Consensus       158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            45888888888888888888888888888888888888887777777665

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.81  E-value=1.2e-08  Score=76.34  Aligned_cols=66  Identities=32%  Similarity=0.468  Sum_probs=50.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703          58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (401)
Q Consensus        58 ~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~  123 (401)
                      ++.|+|++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..+++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            567778888888888888888888888888888888888888888888888888877666665554

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.77  E-value=2.7e-07  Score=101.10  Aligned_cols=156  Identities=13%  Similarity=0.082  Sum_probs=115.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++.+|.++.........+...|++++|+.++++++  + |. +.....+..+|.+|..+|+|++|++.|+++++.+|+++
T Consensus        61 L~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~-p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~  136 (822)
T PRK14574         61 SKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--S-SM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP  136 (822)
T ss_pred             HhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--c-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence            45677775444477788888999999999999999  4 43 33556666668899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV  160 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (401)
                      .+++.++.++...+++++|+..++++...+|.+... ..+..++...+...        .+...|+.+++ .|.+.+...
T Consensus       137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~--------~AL~~~ekll~~~P~n~e~~~  207 (822)
T PRK14574        137 DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY--------DALQASSEAVRLAPTSEEVLK  207 (822)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH--------HHHHHHHHHHHhCCCCHHHHH
Confidence            999999999999999999999999999999985544 33333332222221        13445777777 455555555


Q ss_pred             HHHHHHHHhh
Q psy4703         161 TAVNNLVVLA  170 (401)
Q Consensus       161 ~a~~~L~~l~  170 (401)
                      ..+..+...+
T Consensus       208 ~~~~~l~~~~  217 (822)
T PRK14574        208 NHLEILQRNR  217 (822)
T ss_pred             HHHHHHHHcC
Confidence            5555554433

>KOG1308|consensus

Probab=98.76  E-value=8e-09  Score=99.51  Aligned_cols=117  Identities=27%  Similarity=0.442  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      ..+...+-.+..++..|.+++||+.|+.+|.++ |.   .+.+|.+++.+++++++...|+.+|..||+++|+..+.|-.
T Consensus       112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~ln-p~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf  187 (377)
T KOG1308|consen  112 DQANDKKVQASEALNDGEFDTAIELFTSAIELN-PP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF  187 (377)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhcccccccccC-Cc---hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence            346667788889999999999999999999999 76   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      +|.++..+|+|++|..++..+++++-+ ..+-..|..+....
T Consensus       188 rg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a  228 (377)
T KOG1308|consen  188 RGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNA  228 (377)
T ss_pred             hhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccch
Confidence            999999999999999999999998743 34444444444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.75  E-value=2.2e-07  Score=87.64  Aligned_cols=112  Identities=17%  Similarity=0.206  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALF   85 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~   85 (401)
                      ++.+++.+..+++.|+|.+|...|...|+.. |+.+..+.++|.+|.+++.+|+|+.|...|..+++-.|++   +++++
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            3558999999999999999999999999999 9888899999999999999999999999999999998876   56799


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      .+|.+...+|+-++|...|+++++-.|+.+.+...-
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            999999999999999999999999999987765543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.75  E-value=2.4e-07  Score=78.07  Aligned_cols=99  Identities=20%  Similarity=0.163  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---DPKALFR   86 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~---~~kA~~~   86 (401)
                      +.+++.|..+-..|+.++|+.+|.+++... ...+....++.++|.++..+|++++|+..+++++...|+   +......
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            467899999999999999999999999987 554667889999999999999999999999999999888   7778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHR  109 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~  109 (401)
                      ++.++..+|++++|+..+-.++.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999877764

>KOG1174|consensus

Probab=98.74  E-value=3.6e-07  Score=90.03  Aligned_cols=157  Identities=13%  Similarity=0.085  Sum_probs=120.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHH-------------
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE-------------   68 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~-------------   68 (401)
                      |+.+|.+.+++..+|+.+...|+.++|+..|+.|+.+. |-   ....|..+-.||+..|++.+|..             
T Consensus       327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~---rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA  402 (564)
T KOG1174|consen  327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PY---RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA  402 (564)
T ss_pred             hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hh---hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence            78899999999999999999999999999999999999 65   78888888899998888888766             


Q ss_pred             -----------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          69 -----------------------DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        69 -----------------------~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                                             .++++|.++|.+.+|...+|..+...|++++++..+++.+...|++ ..+..|+.+.
T Consensus       403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~  481 (564)
T KOG1174|consen  403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIM  481 (564)
T ss_pred             hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHH
Confidence                                   4455666777788888888888888888888888888888777653 4566677666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q psy4703         126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAR  171 (401)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~  171 (401)
                      ....+.+++..        +|.+++..++..+....-++.+-..-.
T Consensus       482 ~A~Ne~Q~am~--------~y~~ALr~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  482 RAQNEPQKAME--------YYYKALRQDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             HHhhhHHHHHH--------HHHHHHhcCccchHHHHHHHHHHhccC
Confidence            66666544433        677787766655555555555444333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.74  E-value=4e-06  Score=80.57  Aligned_cols=198  Identities=14%  Similarity=0.134  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----PKALF   85 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-----~kA~~   85 (401)
                      ++...|..|...|-++.|...|...++..    .....+.-.+-..|....+|++||+..++...+.|..     +..|.
T Consensus       109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~----efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC  184 (389)
T COG2956         109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEG----EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC  184 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhcch----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            44444555555555555555555444433    3456777788888999999999999999888888755     45677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--hhHHHHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP--MDKRVTAV  163 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~  163 (401)
                      -+|+.+....+++.|...+++|++.+|++..+.-.++++....+++.++.+        .++.+...++.  .+.....+
T Consensus       185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~--------~~e~v~eQn~~yl~evl~~L~  256 (389)
T COG2956         185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVE--------ALERVLEQNPEYLSEVLEMLY  256 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHH--------HHHHHHHhChHHHHHHHHHHH
Confidence            788888888899999999999999999999999999999888888766554        34555442222  24445667


Q ss_pred             HHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHH--HHhcHHHHHHHHcCCChh
Q psy4703         164 NNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSI--IKQGVDILKRLYMSKNEN  229 (401)
Q Consensus       164 ~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i--~~~gv~~Lk~l~~s~~d~  229 (401)
                      .|+..+|++.++...+         ....+....++..++...+|...  .+.....|.+.++.+|+.
T Consensus       257 ~~Y~~lg~~~~~~~fL---------~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~  315 (389)
T COG2956         257 ECYAQLGKPAEGLNFL---------RRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM  315 (389)
T ss_pred             HHHHHhCCHHHHHHHH---------HHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence            7888888865554443         22222122333433333333222  334455666666555553

>KOG4162|consensus

Probab=98.74  E-value=8.7e-08  Score=100.39  Aligned_cols=121  Identities=17%  Similarity=0.132  Sum_probs=64.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy4703          14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA   93 (401)
Q Consensus        14 ~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~   93 (401)
                      ..+..+.+.++-++|..+..+|-.++ |.   .+..|+.+|.++...|.+.+|.+.|..|+.+||+++....-+|.++..
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~~-~l---~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle  730 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKID-PL---SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE  730 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcc-hh---hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            33444444445555555555555555 32   455555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHH--HHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          94 IGKFEEAYT--DAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQL  138 (401)
Q Consensus        94 lg~~eeA~~--~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~  138 (401)
                      .|+-.-|..  .+..++++||.|+++|..++.+.+..++..++...+
T Consensus       731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf  777 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF  777 (799)
T ss_pred             hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence            555444444  555555555555555555555555555555444433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.73  E-value=5.6e-07  Score=78.16  Aligned_cols=98  Identities=20%  Similarity=0.191  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      ..+....|..++..|+|++|+..|++++... |+......+.+.+|.+++..|+|++|+..++. +.-.+-.+.++..+|
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~G  125 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLG  125 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHH
Confidence            6677889999999999999999999999988 77566788899999999999999999999966 344455677889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q psy4703          89 QAYEAIGKFEEAYTDAKHIH  108 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal  108 (401)
                      .+|...|++++|+..|++|+
T Consensus       126 di~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  126 DIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHhC
Confidence            99999999999999999874

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.72  E-value=1.4e-05  Score=81.09  Aligned_cols=106  Identities=18%  Similarity=0.235  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERA-TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~-~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      ..+...+......|+++.|..+|.++.+.+ |+   .. ......+..+...|++++|+..++++++.+|+++.++..++
T Consensus       119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-~~---~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~  194 (398)
T PRK10747        119 VNYLLAAEAAQQRGDEARANQHLERAAELA-DN---DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAE  194 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc---chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            334444666699999999999999999998 76   32 23334589999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP  119 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~  119 (401)
                      .+|...|++++|+..+.+..+..+.++....
T Consensus       195 ~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~  225 (398)
T PRK10747        195 QAYIRTGAWSSLLDILPSMAKAHVGDEEHRA  225 (398)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            9999999999999999999888776654433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.71  E-value=2.7e-07  Score=91.24  Aligned_cols=129  Identities=18%  Similarity=0.138  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC----------------------------------CcchHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE----------------------------------SHERATCLKN   52 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~----------------------------------~~~~~~~~~n   52 (401)
                      ...+.....|..++..|++++|+..++++++.. |+                                  .+.....+.+
T Consensus        41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  119 (355)
T cd05804          41 TERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM  119 (355)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence            445666777888888888888888888888776 53                                  1233445567


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH----HHHHHHHHHHH
Q psy4703          53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI----QPVLSRLFAIV  128 (401)
Q Consensus        53 ~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~----~~~L~~l~~~~  128 (401)
                      +|.++...|++++|+..++++++++|+++.++..+|.++...|++++|+..+++++...|.++..    +..++.++...
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~  199 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER  199 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence            77888899999999999999999999999999999999999999999999999999888765433    33567777766


Q ss_pred             HHHHHHHH
Q psy4703         129 TKRMQENE  136 (401)
Q Consensus       129 ~~~~~a~~  136 (401)
                      ++..++..
T Consensus       200 G~~~~A~~  207 (355)
T cd05804         200 GDYEAALA  207 (355)
T ss_pred             CCHHHHHH
Confidence            66654444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.71  E-value=1.4e-06  Score=95.05  Aligned_cols=127  Identities=11%  Similarity=0.104  Sum_probs=111.8

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-   81 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~-   81 (401)
                      ..+|....++....+.+...+++++|+...+.+++.. |+   ...+|+..|..|++.+++.++...  .++.+-+.+. 
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~---~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~   98 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KK---SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK   98 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-Cc---ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc
Confidence            3568889999999999999999999999999999999 76   888999999999999988887766  6666666665 


Q ss_pred             ------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          82 ------------------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        82 ------------------kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                                        .|++.+|.||.++|++++|+..|+++++++|+|+.+...++-.+... +..++..
T Consensus        99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720         99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence                              89999999999999999999999999999999999999999888777 5544443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.71  E-value=1.1e-07  Score=72.21  Aligned_cols=70  Identities=29%  Similarity=0.466  Sum_probs=64.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (401)
Q Consensus        16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~   89 (401)
                      .+.++..++|++|+.++++++.++ |+   ++.++..+|.||+++|+|.+|+.+++++++.+|+++.+..-++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELD-PD---DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC-cc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            467899999999999999999999 76   89999999999999999999999999999999999888766553

>KOG1156|consensus

Probab=98.70  E-value=2.7e-06  Score=87.96  Aligned_cols=117  Identities=15%  Similarity=0.094  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a   90 (401)
                      .++.+....+..++|...+...+..+... |+   +...+...|..+..+|+-++|...+..++..|+.....|.-+|.+
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~   84 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKF-PE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL   84 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhC-Cc---cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence            34444444444555555555555544444 33   334444444444444555555555555555444444444444544


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          91 YEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        91 ~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      +..-.+|++|+.+|+.|+.++|+|.+++..+.-++..+++.
T Consensus        85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~  125 (700)
T KOG1156|consen   85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY  125 (700)
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence            44445555555555555555555544444444444444433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.69  E-value=7.8e-07  Score=87.94  Aligned_cols=162  Identities=10%  Similarity=-0.004  Sum_probs=125.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      +|+.+..+...|..+...|++++|...|.++.+.. |.+.........+|.++...|++++|+..++++++.+|++..++
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~   80 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL   80 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence            79999999999999999999999999999999999 65445667778899999999999999999999999988876543


Q ss_pred             H-------------------------------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          85 F-------------------------------------RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        85 ~-------------------------------------~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      .                                     .+|.++...|++++|+..++++++++|++..+...++.++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          81 KLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             HHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            2                                     455677888899999999999999999998888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC-CCChh----HHHHHHHHHHHhhhcchh
Q psy4703         128 VTKRMQENEQLQNKVHNMFKYVFDT-SAPMD----KRVTAVNNLVVLAREMSG  175 (401)
Q Consensus       128 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~----~~~~a~~~L~~l~~~~~g  175 (401)
                      .++..++..        +++..... +....    .....+..+...|+.+.+
T Consensus       161 ~g~~~eA~~--------~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         161 QGRFKEGIA--------FMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             cCCHHHHHH--------HHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            777755444        55555552 21111    223455556666665433

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.68  E-value=2.3e-06  Score=78.17  Aligned_cols=110  Identities=17%  Similarity=0.102  Sum_probs=102.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      ...+..++++|+.|=..|-+.-|.--|++++.+. |+   .+.++..+|.-+...|+|+.|.+.|+.++++||.+--++.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l  137 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIR-PD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL  137 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-CC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence            3467888999999999999999999999999999 77   8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP  119 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~  119 (401)
                      +||.++..-|+|.-|.+++.+-.+-||+||--..
T Consensus       138 NRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L  171 (297)
T COG4785         138 NRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL  171 (297)
T ss_pred             ccceeeeecCchHhhHHHHHHHHhcCCCChHHHH
Confidence            9999999999999999999999999999975433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.67  E-value=7e-08  Score=72.21  Aligned_cols=67  Identities=33%  Similarity=0.406  Sum_probs=61.0

Q ss_pred             HHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703          19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (401)
Q Consensus        19 ~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~   89 (401)
                      ++..|+|++|+..|+++++.+ |+   +..+++.+|.||++.|++++|...+.+++..+|+++..+.-+++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRN-PD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHT-TT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            468899999999999999999 77   89999999999999999999999999999999998887776665

...

>KOG0495|consensus

Probab=98.66  E-value=1.7e-06  Score=89.49  Aligned_cols=130  Identities=15%  Similarity=0.116  Sum_probs=115.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++.+|++-+.+...-...+...+|+.|-.++.+|-... |    ...+|+.-+....-+++.++|+..|+++|+..|++.
T Consensus       611 f~~~pnseeiwlaavKle~en~e~eraR~llakar~~s-g----TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~  685 (913)
T KOG0495|consen  611 FEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS-G----TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH  685 (913)
T ss_pred             HHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-C----cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH
Confidence            45678878888888888888888888988888888877 6    467888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      +.|..+|+++..+++.+.|...|...++..|+....+..|.++.+..+...++..
T Consensus       686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~  740 (913)
T KOG0495|consen  686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS  740 (913)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence            9999999999999999999999999999999999999999999888876655444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=4.9e-07  Score=90.87  Aligned_cols=123  Identities=20%  Similarity=0.161  Sum_probs=110.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      |...|+++-.+-..|..++..++..+|++.+++++.++ |+   ...+..++|.+|++.|++.+|+...+..+.-+|+++
T Consensus       333 ~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~---~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp  408 (484)
T COG4783         333 IAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PN---SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP  408 (484)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC---ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence            45678888888899999999999999999999999999 77   789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      ..|..+|++|..+|+-.+|...+-..+.+..+-..+...+.+.....
T Consensus       409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         409 NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888888877666666555554433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.66  E-value=7.7e-08  Score=74.17  Aligned_cols=72  Identities=25%  Similarity=0.448  Sum_probs=42.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~---p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l   76 (401)
                      +|..+..+.+.|..++..|+|++|+.+|++++++..   ++++..+.++.++|.+|..+|++++|+..+++++++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            355566666666666666666666666666665521   222334566666666666666666666666666654

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.66  E-value=1e-07  Score=95.97  Aligned_cols=68  Identities=12%  Similarity=0.097  Sum_probs=60.1

Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          43 SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA---LFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        43 ~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA---~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      .|.++..++|+|.+|+++|+|++|+..|+++|+++|++..+   |+++|.+|..+|++++|+.++++|+++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            36688899999999999999999999999999999988854   899999999999999999999999887

>KOG1129|consensus

Probab=98.63  E-value=1.4e-07  Score=90.62  Aligned_cols=154  Identities=16%  Similarity=0.133  Sum_probs=102.4

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      +.-|.+...+...+.++-..+++++|+++|..+++++ |.   +..+.-.+|..|+--++.+-|+.+|.+.|++.-.+++
T Consensus       284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~---nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe  359 (478)
T KOG1129|consen  284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PI---NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE  359 (478)
T ss_pred             hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cc---cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence            3456666666667777777777777777777777777 54   5555566666677777777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKR  159 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~---~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  159 (401)
                      .+.++|.|.+.-++|+-++..|++|+..-.+.   ..+|.+++.+...+++..-        +..+|+.++..+++..  
T Consensus       360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl--------A~rcfrlaL~~d~~h~--  429 (478)
T KOG1129|consen  360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL--------AKRCFRLALTSDAQHG--  429 (478)
T ss_pred             HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH--------HHHHHHHHhccCcchH--
Confidence            77777777777777777777777777654322   3566677766666666633        3447777777544433  


Q ss_pred             HHHHHHHHHhhh
Q psy4703         160 VTAVNNLVVLAR  171 (401)
Q Consensus       160 ~~a~~~L~~l~~  171 (401)
                       .+++||.++..
T Consensus       430 -ealnNLavL~~  440 (478)
T KOG1129|consen  430 -EALNNLAVLAA  440 (478)
T ss_pred             -HHHHhHHHHHh
Confidence             35666666555

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.61  E-value=2.3e-06  Score=82.18  Aligned_cols=137  Identities=17%  Similarity=0.157  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE--SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~--~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      ..++...-+.|-...+|++||+.-++.+.+. |.  +-.-+.+|..+|..++...++++|+....+|++.||+.+.|-..
T Consensus       141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~  219 (389)
T COG2956         141 EGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII  219 (389)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence            4467778899999999999999999999998 53  34567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTN-KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA  154 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~-~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (401)
                      +|+++...|+|+.|++.++++++.||.. +++.+.|..++..+++......        ++.++.+...
T Consensus       220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~--------fL~~~~~~~~  280 (389)
T COG2956         220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN--------FLRRAMETNT  280 (389)
T ss_pred             hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH--------HHHHHHHccC
Confidence            9999999999999999999999999986 6777788888887777654433        5666666333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.60  E-value=6.6e-07  Score=90.15  Aligned_cols=73  Identities=18%  Similarity=0.232  Sum_probs=66.2

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV   77 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld   77 (401)
                      .+|+++..+.++|..++..|+|++|+..|++||+++ |+......+|+|+|.||..+|++++|+.++.+|+++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999 8722222569999999999999999999999999983

>KOG3060|consensus

Probab=98.60  E-value=1.9e-05  Score=73.79  Aligned_cols=134  Identities=13%  Similarity=0.034  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      ...+-...-++...|+.+.|..++++.-... |+   ...+-...|..+...|+|++|+++|+..|+-||.|...+-|.-
T Consensus        52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~---S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl  127 (289)
T KOG3060|consen   52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PG---SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL  127 (289)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CC---ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence            3344445566777888999999999988888 76   6667777888899999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA  154 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (401)
                      .+...+|+--+|++.+...++..++|.+++..+..++-..++..++..        +++.+.-..+
T Consensus       128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f--------ClEE~ll~~P  185 (289)
T KOG3060|consen  128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF--------CLEELLLIQP  185 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH--------HHHHHHHcCC
Confidence            999999999999999999999999999999999999999999977666        5666555333

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.59  E-value=1.1e-07  Score=73.34  Aligned_cols=67  Identities=25%  Similarity=0.394  Sum_probs=59.2

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-------P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      |..+.++.++|.+|..+|+|++|+.+|++++++.       |.-+.+++++|.++..+|++++|+..+++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5678999999999999999999999999999762       223678999999999999999999999999876

...

>KOG1174|consensus

Probab=98.58  E-value=1.9e-06  Score=85.03  Aligned_cols=132  Identities=14%  Similarity=0.190  Sum_probs=111.3

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-------------------------------cchHHHHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-------------------------------HERATCLKN   52 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~-------------------------------~~~~~~~~n   52 (401)
                      .-|++...+-..|..++..|++.+|+..|+++..++ |..                               ...+.-|+-
T Consensus       227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV  305 (564)
T KOG1174|consen  227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV  305 (564)
T ss_pred             cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence            346677888899999999999999999999999999 640                               123334444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHH
Q psy4703          53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM  132 (401)
Q Consensus        53 ~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~  132 (401)
                      -+...+..++|..|+.+.+++|..+|++..++...|.++..+|+.++|+-.|+.|..+.|..-.....|-..+-..+...
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence            55556678899999999999999999999999999999999999999999999999999999888888887777766665


Q ss_pred             HHHH
Q psy4703         133 QENE  136 (401)
Q Consensus       133 ~a~~  136 (401)
                      ++..
T Consensus       386 EA~~  389 (564)
T KOG1174|consen  386 EANA  389 (564)
T ss_pred             HHHH
Confidence            5543

>KOG4162|consensus

Probab=98.56  E-value=1.1e-06  Score=92.29  Aligned_cols=109  Identities=15%  Similarity=0.148  Sum_probs=101.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE--DCSKSLEIVPDDPK   82 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~--~~~kAL~ldP~~~k   82 (401)
                      .|-.+..|+..|..+..+|++.+|.+.|..|+.++ |+   +......+|.++++.|+-.-|..  ....++++||.+++
T Consensus       680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~---hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e  755 (799)
T KOG4162|consen  680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PD---HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE  755 (799)
T ss_pred             chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CC---CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence            45667788999999999999999999999999999 77   78888999999999998887877  99999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~  117 (401)
                      +|+.+|.++.++|+.++|..+|+.|+++++.+|.-
T Consensus       756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~  790 (799)
T KOG4162|consen  756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL  790 (799)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence            99999999999999999999999999999998753

>KOG1128|consensus

Probab=98.55  E-value=3.4e-07  Score=95.60  Aligned_cols=121  Identities=12%  Similarity=0.106  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy4703          12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY   91 (401)
Q Consensus        12 l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~   91 (401)
                      ....|+..+.+++|+++..+++..++++ |-   ....|+++|.|++++++++.|..+|.+++.++|++..+|.+++.+|
T Consensus       488 ~r~~~~~~~~~~~fs~~~~hle~sl~~n-pl---q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  488 QRSLALLILSNKDFSEADKHLERSLEIN-PL---QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             HHhhccccccchhHHHHHHHHHHHhhcC-cc---chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence            3444555566789999999999999999 54   8889999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          92 EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        92 ~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ..+++-.+|...+++|++-+-++..++++..-+....+....+..
T Consensus       564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~  608 (777)
T KOG1128|consen  564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK  608 (777)
T ss_pred             HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence            999999999999999999998888999988888888877765544

>TIGR00540 hemY_coli hemY protein

Probab=98.55  E-value=1.4e-06  Score=88.77  Aligned_cols=127  Identities=15%  Similarity=0.079  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP--KAL   84 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~--kA~   84 (401)
                      ++...+...|..+...|++++|+..+.++++.. |+... ......+....+..++...++..++++++.+|+++  ..+
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~-~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll  338 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRA-ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN  338 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCccc-chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence            578888999999999999999999999999999 76221 11123344445556889999999999999999999  888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAK--HIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~--kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ..+|.++..+|+|++|.++|+  .+++.+|++.. ...++.++...++..++.+
T Consensus       339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~  391 (409)
T TIGR00540       339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAA  391 (409)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence            899999999999999999999  68888997766 4589999999888766554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129|consensus

Probab=98.50  E-value=1.7e-07  Score=89.95  Aligned_cols=131  Identities=15%  Similarity=0.127  Sum_probs=114.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP---   78 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP---   78 (401)
                      ++.+|.+.++.-..|..||-.++.+-|+.+|++.+++. -.   .+.++.|+|.|.+-.++|+-++..|.+|+..-.   
T Consensus       317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~---speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~  392 (478)
T KOG1129|consen  317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQ---SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG  392 (478)
T ss_pred             HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CC---ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc
Confidence            34566677777777888999999999999999999998 44   899999999999999999999999999998754   


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      .-.+.||++|.+....|++.-|.++|+-++..||++.++..+|+.+....++...+..
T Consensus       393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars  450 (478)
T KOG1129|consen  393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS  450 (478)
T ss_pred             hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence            3467899999999999999999999999999999999999999998887777655444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.48  E-value=1.2e-06  Score=91.59  Aligned_cols=112  Identities=10%  Similarity=0.040  Sum_probs=92.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQG--------DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g--------~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA   73 (401)
                      |+.+|+.+.++-..+..+....        +...+.....+++.+. .+ +..+.+|.-+|..+...|++++|...+++|
T Consensus       369 i~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~-~~-~~~~~~~~ala~~~~~~g~~~~A~~~l~rA  446 (517)
T PRK10153        369 LKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP-EL-NVLPRIYEILAVQALVKGKTDEAYQAINKA  446 (517)
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc-cC-cCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            6788999888888777665542        3445566666666652 22 235688888999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (401)
Q Consensus        74 L~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~  116 (401)
                      ++++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus       447 l~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        447 IDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            99999 5889999999999999999999999999999999875

>PRK11906 transcriptional regulator; Provisional

Probab=98.47  E-value=7.3e-06  Score=82.83  Aligned_cols=132  Identities=9%  Similarity=-0.029  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHH---hhcCCCCcchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHH
Q psy4703          11 KLKESGNSAFKQGD---YETALDFYTKAL---KVTAEESHERATCLKNRAAVYLKQ---------NQNDKVIEDCSKSLE   75 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~---y~eAi~~y~~Al---~l~~p~~~~~~~~~~n~a~~y~kl---------g~y~~Ai~~~~kAL~   75 (401)
                      .++.+|...+.++.   .+.|+.+|.+|+   .++ |+   .+.+|..+|.||+..         .+-.+|.....+|++
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld-p~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve  332 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ-TL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD  332 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC-cc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            44777877776664   456999999999   888 65   999999999999875         235678999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703          76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA  154 (401)
Q Consensus        76 ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (401)
                      +||.|+.|++.+|.++...++++.|...|++|+.++|+...++...+-+....++...+..        +.++++..++
T Consensus       333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~--------~i~~alrLsP  403 (458)
T PRK11906        333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARI--------CIDKSLQLEP  403 (458)
T ss_pred             cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH--------HHHHHhccCc
Confidence            9999999999999999999999999999999999999999999999888887777654444        6777777444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.47  E-value=5e-06  Score=86.99  Aligned_cols=148  Identities=14%  Similarity=0.145  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh
Q psy4703           8 DYNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--------QNDKVIEDCSKSLEI   76 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~---y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg--------~y~~Ai~~~~kAL~l   76 (401)
                      .+-.++.+|..++..++   +..|+.+|++|++++ |+   ++.+|-.++.+|....        +...+.....+++.+
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            35566888998887766   889999999999999 87   8889998888886642        345666667776664


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703          77 --VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA  154 (401)
Q Consensus        77 --dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (401)
                        +|.++.+|.-+|..+...|++++|...+++|++++|+ ..++..+++++...++..++..        .|++++..++
T Consensus       414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~--------~~~~A~~L~P  484 (517)
T PRK10153        414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAAD--------AYSTAFNLRP  484 (517)
T ss_pred             ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH--------HHHHHHhcCC
Confidence              7888899999999999999999999999999999994 6788899999999888755544        7888888555


Q ss_pred             ChhHHHHHHHHHHHh
Q psy4703         155 PMDKRVTAVNNLVVL  169 (401)
Q Consensus       155 ~~~~~~~a~~~L~~l  169 (401)
                      ..+. ....+|+...
T Consensus       485 ~~pt-~~~~~~~~f~  498 (517)
T PRK10153        485 GENT-LYWIENLVFQ  498 (517)
T ss_pred             CCch-HHHHHhcccc
Confidence            5443 3344555543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.46  E-value=5.3e-06  Score=90.71  Aligned_cols=163  Identities=14%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC----------------cchHHHHHHHHHHHHHcCCHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----------------HERATCLKNRAAVYLKQNQNDK   65 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~----------------~~~~~~~~n~a~~y~klg~y~~   65 (401)
                      ++.+|+....++..|..++..+++.+|...  .++... +..                +.+..+++.+|.||-++|++++
T Consensus        58 l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k  134 (906)
T PRK14720         58 LKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKK  134 (906)
T ss_pred             HHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence            456788899999999999999988887766  566555 321                2244799999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------CCCCccH-HHHHHHH
Q psy4703          66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV--------------------EPTNKAI-QPVLSRL  124 (401)
Q Consensus        66 Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l--------------------~P~~~~~-~~~L~~l  124 (401)
                      |...|+++|++||+|+.++.++|-.|... ++++|...+.+|+..                    +|.+... ...+.++
T Consensus       135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki  213 (906)
T PRK14720        135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKV  213 (906)
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHH
Confidence            99999999999999999999999999999 999999999998775                    3433222 2222233


Q ss_pred             HHHHH------------HHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHh
Q psy4703         125 FAIVT------------KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVL  169 (401)
Q Consensus       125 ~~~~~------------~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l  169 (401)
                      ....+            +.-+..+.+ ....++++.+++ .+.+...+...+.|+...
T Consensus       214 ~~~~~~~~~~~~~~~l~~~y~~~~~~-~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k  270 (906)
T PRK14720        214 LGHREFTRLVGLLEDLYEPYKALEDW-DEVIYILKKILEHDNKNNKAREELIRFYKEK  270 (906)
T ss_pred             HhhhccchhHHHHHHHHHHHhhhhhh-hHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence            33322            111112222 234567888888 677777777777777643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.44  E-value=3.5e-06  Score=75.03  Aligned_cols=97  Identities=23%  Similarity=0.244  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy4703          25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ----------NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAI   94 (401)
Q Consensus        25 y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~----------y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~l   94 (401)
                      |+.|.+.|+.....+ |.   ++..+++=|.+++.+.+          +++|+.-|++||.++|+...|++.+|.+|..+
T Consensus         7 FE~ark~aea~y~~n-P~---DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN-PL---DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHH--TT----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cH---hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            678999999999999 76   88889998888887644          56789999999999999999999999999987


Q ss_pred             CC-----------HHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          95 GK-----------FEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        95 g~-----------~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      +.           |++|..+|++|...+|+|...+..|....
T Consensus        83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            75           89999999999999999987777765543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.44  E-value=1.1e-05  Score=70.99  Aligned_cols=111  Identities=11%  Similarity=0.009  Sum_probs=97.1

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      ......+..|.-++..|++++|...|.-..-+||.+++.++.+|.++..+++|++|+..|-.+..++++|+......+.+
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC  114 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence            46667778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHH
Q psy4703         125 FAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAV  163 (401)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  163 (401)
                      +-.+++...+..        +|..+...+.....+.++.
T Consensus       115 ~l~l~~~~~A~~--------~f~~a~~~~~~~~l~~~A~  145 (165)
T PRK15331        115 QLLMRKAAKARQ--------CFELVNERTEDESLRAKAL  145 (165)
T ss_pred             HHHhCCHHHHHH--------HHHHHHhCcchHHHHHHHH
Confidence            999998855544        7888887666554444443

>KOG1127|consensus

Probab=98.40  E-value=5.2e-06  Score=89.29  Aligned_cols=129  Identities=13%  Similarity=0.167  Sum_probs=94.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-   80 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-   80 (401)
                      +..++.-+-++-..|..|..--+...|..+|.+|.++| |+   ++.+.-..+..|....+++.|...+..+-+.+|.. 
T Consensus       485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-at---daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~  560 (1238)
T KOG1127|consen  485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-AT---DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA  560 (1238)
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ch---hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence            45667777778888888877778888888888888888 55   66666667777777777777777766666666643 


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703          81 -PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        81 -~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a  134 (401)
                       ...|.+||..|.+-+++.+|+.+|+.+++.+|+|.+.+..++.++...+.+..+
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~A  615 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHA  615 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehH
Confidence             234556777777777777888888888888888877788887777777766443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.39  E-value=7.7e-06  Score=78.33  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH---
Q psy4703          47 ATCLKNRAAVY-LKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP---  119 (401)
Q Consensus        47 ~~~~~n~a~~y-~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~---  119 (401)
                      ...++..|..+ ++.|+|++|+..|+..++..|++   +.++|.+|.+|+..|+|++|+..|++++...|+++....   
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46778888886 67899999999999999999988   589999999999999999999999999999998755544   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhH
Q psy4703         120 VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDK  158 (401)
Q Consensus       120 ~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  158 (401)
                      .++.++..+++..        .+..+|+.+...-++...
T Consensus       222 klg~~~~~~g~~~--------~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        222 KVGVIMQDKGDTA--------KAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHHcCCHH--------HHHHHHHHHHHHCcCCHH
Confidence            4455555555443        344467777764333333

>KOG1156|consensus

Probab=98.38  E-value=9.4e-06  Score=84.07  Aligned_cols=160  Identities=13%  Similarity=0.118  Sum_probs=135.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      +...|++.+.+-..|-.+...|+-++|..+-..++..+ +.   ...+|.-+|..+...++|++|+.+|..|+.++|+|.
T Consensus        34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~  109 (700)
T KOG1156|consen   34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LK---SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL  109 (700)
T ss_pred             HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cc---cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence            45678899999999999999999999999999999999 66   889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVT  161 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (401)
                      ..|+-++-...++++|+.....-.+.+++.|+...-+..++..+...+++..+..     +.+.|......+.+ .....
T Consensus       110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~-----il~ef~~t~~~~~s-~~~~e  183 (700)
T KOG1156|consen  110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE-----ILEEFEKTQNTSPS-KEDYE  183 (700)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhccCCC-HHHHH
Confidence            9999999999999999999999999999999999999999999888888765543     55556655542233 23344


Q ss_pred             HHHHHHHhhh
Q psy4703         162 AVNNLVVLAR  171 (401)
Q Consensus       162 a~~~L~~l~~  171 (401)
                      ....++.+.+
T Consensus       184 ~se~~Ly~n~  193 (700)
T KOG1156|consen  184 HSELLLYQNQ  193 (700)
T ss_pred             HHHHHHHHHH
Confidence            4455554443

>KOG1310|consensus

Probab=98.36  E-value=1.2e-06  Score=88.73  Aligned_cols=112  Identities=25%  Similarity=0.359  Sum_probs=101.1

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ---NQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl---g~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      -|..++.++.+||..|-.+.+..|+..|.++++.. |.   ...+|.|+|.++++.   |+.-.|+.+|..|+++||...
T Consensus       370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~-~~---~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~  445 (758)
T KOG1310|consen  370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYV-PD---AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ  445 (758)
T ss_pred             chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhc-cc---hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH
Confidence            36778999999999999999999999999999999 65   899999999999985   577889999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~  120 (401)
                      +|||+++.++..++++.+|+.+...+....|.+......
T Consensus       446 kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~  484 (758)
T KOG1310|consen  446 KAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNF  484 (758)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence            999999999999999999999998888888866554443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.9e-05  Score=75.50  Aligned_cols=116  Identities=12%  Similarity=0.125  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHH
Q psy4703          25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK---FEEAY  101 (401)
Q Consensus        25 y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~---~eeA~  101 (401)
                      .+..+.-.+.-++.+ |+   +..-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.++.....   -.++.
T Consensus       138 ~~~l~a~Le~~L~~n-P~---d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~  213 (287)
T COG4235         138 MEALIARLETHLQQN-PG---DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR  213 (287)
T ss_pred             HHHHHHHHHHHHHhC-CC---CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence            456666677778888 76   899999999999999999999999999999999999999999999976654   56789


Q ss_pred             HHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703         102 TDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus       102 ~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (401)
                      ..+++++.+||+|..+...|+......+++.++..        .|+.+++.
T Consensus       214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~--------~Wq~lL~~  256 (287)
T COG4235         214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA--------AWQMLLDL  256 (287)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH--------HHHHHHhc
Confidence            99999999999999999999999888888765544        67778773

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.34  E-value=1e-06  Score=69.10  Aligned_cols=76  Identities=26%  Similarity=0.378  Sum_probs=67.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          60 QNQNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        60 lg~y~~Ai~~~~kAL~ldP~--~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      .|+|+.|+..++++++.+|.  +...++.+|.+|+.+|+|++|+..+++ ...+|.+......+++++..+++..++..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58999999999999999995  566788899999999999999999999 88999988999999999999999876655

>PRK11906 transcriptional regulator; Provisional

Probab=98.33  E-value=5.9e-06  Score=83.51  Aligned_cols=108  Identities=13%  Similarity=-0.031  Sum_probs=98.8

Q ss_pred             cCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQ---------GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~---------g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA   73 (401)
                      ..+|..+.+|...+..++..         .+-.+|.+.-.+|++++ |.   ++.++..+|.+....++++.|+..+++|
T Consensus       289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA  364 (458)
T PRK11906        289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TV---DGKILAIMGLITGLSGQAKVSHILFEQA  364 (458)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence            67888899998888887754         34567889999999999 76   9999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        74 L~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      +.++|+++.+++.+|.++...|+.++|+..++++++++|.-
T Consensus       365 ~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        365 KIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            99999999999999999999999999999999999999964

>KOG4648|consensus

Probab=98.32  E-value=1.9e-06  Score=83.33  Aligned_cols=102  Identities=17%  Similarity=0.251  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                      ...+|..||++|.|++||.+|++++.++|.++..+.+||.+|+++.+|..|..+|..|+.+|-....++..-+.....++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            46689999999999999999999999999999999999999999999999999999999998766555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703         130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (401)
Q Consensus       130 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (401)
                      ...++.+        -++.++. .|.+.+.+
T Consensus       180 ~~~EAKk--------D~E~vL~LEP~~~ELk  202 (536)
T KOG4648|consen  180 NNMEAKK--------DCETVLALEPKNIELK  202 (536)
T ss_pred             hHHHHHH--------hHHHHHhhCcccHHHH
Confidence            5433332        3556666 34444433

>KOG4234|consensus

Probab=98.29  E-value=2.2e-05  Score=70.98  Aligned_cols=101  Identities=17%  Similarity=0.265  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      +.-+..-|.-+|+.|+|++|..-|..||++.|.-     .-.|.++|.|+++++.++.|+.++.++++++|.+..+...-
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            3445567888999999999999999999999965     34688999999999999999999999999999987777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4703         122 SRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP  155 (401)
Q Consensus       122 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  155 (401)
                      +.++..+....       ..+.+ |+.++...++
T Consensus       175 Aeayek~ek~e-------ealeD-yKki~E~dPs  200 (271)
T KOG4234|consen  175 AEAYEKMEKYE-------EALED-YKKILESDPS  200 (271)
T ss_pred             HHHHHhhhhHH-------HHHHH-HHHHHHhCcc
Confidence            66666654433       33444 5666664443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.27  E-value=4.2e-05  Score=72.51  Aligned_cols=118  Identities=14%  Similarity=0.138  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC------------------HHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ------------------NDKVIEDC   70 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~------------------y~~Ai~~~   70 (401)
                      ..+....|..+++.++|++|+..|++.++.. |+++....+++.+|.+++.+++                  -.+|+..+
T Consensus        69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~  147 (243)
T PRK10866         69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF  147 (243)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence            3455899999999999999999999999999 9989999999999999866651                  25788999


Q ss_pred             HHHHHhCCCCH---HH--------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          71 SKSLEIVPDDP---KA--------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        71 ~kAL~ldP~~~---kA--------------~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      +..++..|+..   .|              -+..|.-|.+.|.|..|+.-++.+++-.|+.+...+.|..+...
T Consensus       148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a  221 (243)
T PRK10866        148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA  221 (243)
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence            99999999763   22              23467779999999999999999999999887666655444433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.27  E-value=0.00043  Score=65.14  Aligned_cols=113  Identities=16%  Similarity=0.226  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KAL   84 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~---kA~   84 (401)
                      .+..|++.|...++.|+|++|+++|+...... |..+....+...++-++++.++|++|+...++=+.+.|.++   -++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            57889999999999999999999999999999 87788899999999999999999999999999999999775   468


Q ss_pred             HHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          85 FRRCQAYEAIGK--------FEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        85 ~~~a~a~~~lg~--------~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      |-+|.++...=+        -.+|+..|+..++--|+++=+....
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~  156 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK  156 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            888888764432        4579999999999999985444333

>KOG0543|consensus

Probab=98.27  E-value=2e-05  Score=78.00  Aligned_cols=118  Identities=11%  Similarity=0.132  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---------------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~---------------~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      .+.....+|..|++.|+|..|+..|++|+..-+.               -..+|.+++.||.++++|.+|+..+.++|++
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            4556677899999999999999999998876331               1457999999999999999999999999999


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q psy4703         111 EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAR  171 (401)
Q Consensus       111 ~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~  171 (401)
                      +|+|.-+...-++++..++++..+..        .|+.+....++..........+....+
T Consensus       287 ~~~N~KALyRrG~A~l~~~e~~~A~~--------df~ka~k~~P~Nka~~~el~~l~~k~~  339 (397)
T KOG0543|consen  287 DPNNVKALYRRGQALLALGEYDLARD--------DFQKALKLEPSNKAARAELIKLKQKIR  339 (397)
T ss_pred             CCCchhHHHHHHHHHHhhccHHHHHH--------HHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999865544        678888744443444444444444333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.26  E-value=5.7e-05  Score=69.49  Aligned_cols=120  Identities=23%  Similarity=0.259  Sum_probs=96.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-----------NDKVIEDCSKSL   74 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~-----------y~~Ai~~~~kAL   74 (401)
                      |-..++.+..|..+++.|+|.+|+..|++.++.. |+++....+++.+|.+++.+..           ..+|+..|+..+
T Consensus        39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li  117 (203)
T PF13525_consen   39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI  117 (203)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence            4456788999999999999999999999999999 9888899999999999887643           458999999999


Q ss_pred             HhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703          75 EIVPDDPKA-----------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (401)
Q Consensus        75 ~ldP~~~kA-----------------~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~  126 (401)
                      ...|++..+                 -+..|..|.+.|.|..|+.-++.+++-.|+.+.....+..+..
T Consensus       118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~  186 (203)
T PF13525_consen  118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE  186 (203)
T ss_dssp             HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            999987322                 3457889999999999999999999999998766555444333

>KOG0546|consensus

Probab=98.25  E-value=1.6e-06  Score=84.13  Aligned_cols=126  Identities=29%  Similarity=0.336  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--C-------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--E-------------ESHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p-------------~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA   73 (401)
                      .+..++.|+..|+.++|..|...|.+++.--.  |             -.......+.|.+.|-++.+.+..|+..+..+
T Consensus       222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~  301 (372)
T KOG0546|consen  222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA  301 (372)
T ss_pred             hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccc
Confidence            45667889999999999999999998876431  1             12345677889999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        74 L~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a  134 (401)
                      ++.++...++||++++++..+.++++|+++++.+....|++.++...+........++.+.
T Consensus       302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~  362 (372)
T KOG0546|consen  302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRK  362 (372)
T ss_pred             cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988887777666665443

>KOG1128|consensus

Probab=98.24  E-value=2.9e-05  Score=81.48  Aligned_cols=91  Identities=20%  Similarity=0.147  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      ++.+....|......++|.++..+++..++++|-....||++|-+..+++++..|..+|.+++.++|++.+++.++...+
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence            33344444555566799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4703         126 AIVTKRMQENE  136 (401)
Q Consensus       126 ~~~~~~~~a~~  136 (401)
                      ..++++.++-.
T Consensus       564 i~~~~k~ra~~  574 (777)
T KOG1128|consen  564 IRLKKKKRAFR  574 (777)
T ss_pred             HHHhhhHHHHH
Confidence            99988866544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.21  E-value=0.00059  Score=67.49  Aligned_cols=240  Identities=14%  Similarity=0.165  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-DPKALFR   86 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~-~~kA~~~   86 (401)
                      .+....+.|..-+..|+|..|.....++-+.. +.   ....|..-+.+.-++|+++.|=.+..++-+..++ ..-....
T Consensus        83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~lt  158 (400)
T COG3071          83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELT  158 (400)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHH
Confidence            35556678888889999999999999987777 43   4556666677888999999999999999999443 4567889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCChhHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD--TSAPMDKRVTAVN  164 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~  164 (401)
                      ++..+...|+++.|......+++..|.++++.....+++...+.......-+.+     ..+...  .+.-.+....+.+
T Consensus       159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~-----L~ka~~l~~~e~~~le~~a~~  233 (400)
T COG3071         159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK-----LRKAGLLSDEEAARLEQQAWE  233 (400)
T ss_pred             HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH-----HHHccCCChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887655442211     111211  2222333455666


Q ss_pred             HHHHhhhcchhhHHHhhhhHHHHHHHHhhc-cCchhHHhhHH-HHH-HHHHHhcHHHHHHHHc-CCChhHHHHHHHhhhh
Q psy4703         165 NLVVLAREMSGAEMLLKSGVAKQINTLLKC-ETNEEIYLGEE-DFI-TSIIKQGVDILKRLYM-SKNENIRVRALVGLCK  240 (401)
Q Consensus       165 ~L~~l~~~~~gae~~~~e~~v~~L~~ll~~-~~~~e~~lA~e-~fi-~~i~~~gv~~Lk~l~~-s~~d~i~~ralvgLck  240 (401)
                      .++.....+.|.+-+     ..-...+-+. -.+|++.++|. .|| .+..+....++++.++ .-+++        ||-
T Consensus       234 glL~q~~~~~~~~gL-----~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--------L~~  300 (400)
T COG3071         234 GLLQQARDDNGSEGL-----KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--------LCR  300 (400)
T ss_pred             HHHHHHhccccchHH-----HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--------HHH
Confidence            677766666665553     1122222221 14688888874 444 4456777889999887 55555        232


Q ss_pred             ccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCch
Q psy4703         241 LGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPD  278 (401)
Q Consensus       241 l~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~  278 (401)
                      +-..         ...|...+|.++.++|+-.-..+|.
T Consensus       301 ~~~~---------l~~~d~~~l~k~~e~~l~~h~~~p~  329 (400)
T COG3071         301 LIPR---------LRPGDPEPLIKAAEKWLKQHPEDPL  329 (400)
T ss_pred             HHhh---------cCCCCchHHHHHHHHHHHhCCCChh
Confidence            2211         1124456888999999876555553

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.20  E-value=0.0018  Score=73.35  Aligned_cols=97  Identities=10%  Similarity=0.049  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKV----TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKA   83 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l----~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-P~~~kA   83 (401)
                      ...|......+.+.|++++|...|.+....    . |    +...|..+-.+|.+.|++++|...|++..+.+ +.+...
T Consensus       542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~-P----D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t  616 (1060)
T PLN03218        542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPID-P----DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV  616 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC-C----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence            445666666777777777777777766542    2 3    34556666666777777777777777766665 345566


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      |..+..+|.+.|++++|+..|++..+.
T Consensus       617 ynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        617 YTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            666666777777777777776666554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.19  E-value=7.7e-05  Score=77.93  Aligned_cols=86  Identities=14%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      +++.+|..|-..|++++|+.+.++||+..|..+..|+.+|.+|-..|++.+|...++.|-.+|+.|.-+.....+..-..
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence            56788999999999999999999999999999999999999999999999999999999999999877777666655555


Q ss_pred             HHHHHH
Q psy4703         129 TKRMQE  134 (401)
Q Consensus       129 ~~~~~a  134 (401)
                      ++...+
T Consensus       276 ~~~e~A  281 (517)
T PF12569_consen  276 GRIEEA  281 (517)
T ss_pred             CCHHHH
Confidence            555444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127|consensus

Probab=98.19  E-value=0.00015  Score=78.45  Aligned_cols=133  Identities=14%  Similarity=0.145  Sum_probs=116.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      .+.++.++++....+..+....+|+.|......+-+.. |. ......|..+|..|++.+++.+|+.+++.|+..+|.+.
T Consensus       519 FeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~  596 (1238)
T KOG1127|consen  519 FELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY  596 (1238)
T ss_pred             hcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hH-HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH
Confidence            46789999999999999999999999999977777777 53 12334566699999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      .+|..+|.+|..-|+|.-|++.|.+|..++|.+.-...-.+.+...++++..+..
T Consensus       597 n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald  651 (1238)
T KOG1127|consen  597 NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD  651 (1238)
T ss_pred             HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence            9999999999999999999999999999999998887777777777777766554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.17  E-value=2.7e-05  Score=65.68  Aligned_cols=89  Identities=16%  Similarity=0.161  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CccHHHHH
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT---NKAIQPVL  121 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~---~~~~~~~L  121 (401)
                      .+.+++|.++-.+|+.++|+..|+++++.....   ..+++.+|.++..+|++++|+..+++++.-.|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            478999999999999999999999999986444   679999999999999999999999999999898   66777777


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4703         122 SRLFAIVTKRMQENE  136 (401)
Q Consensus       122 ~~l~~~~~~~~~a~~  136 (401)
                      ..+....++..++..
T Consensus        82 Al~L~~~gr~~eAl~   96 (120)
T PF12688_consen   82 ALALYNLGRPKEALE   96 (120)
T ss_pred             HHHHHHCCCHHHHHH
Confidence            777777676655544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.15  E-value=1.8e-05  Score=79.83  Aligned_cols=114  Identities=19%  Similarity=0.150  Sum_probs=97.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy4703          19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE   98 (401)
Q Consensus        19 ~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~e   98 (401)
                      +...++|+.|+..+++..+.+ |+      +...+|.+++..++..+|++...++|..+|.+...+.-.+..++..++++
T Consensus       179 l~~t~~~~~ai~lle~L~~~~-pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  179 LSLTQRYDEAIELLEKLRERD-PE------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HhhcccHHHHHHHHHHHHhcC-Cc------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            344678999999999988888 64      44558888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQ  139 (401)
Q Consensus        99 eA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~  139 (401)
                      .|+..++++.++.|++-..|..|++++..+++...+....+
T Consensus       252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            99999999999999999999999999999998888866443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.13  E-value=4.6e-05  Score=76.93  Aligned_cols=98  Identities=16%  Similarity=0.232  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      ++.....+..++..++..+|+..+.++++.. |.   +..++...|..+++.++|+.|+..+.+++.+.|.+.+.|+.++
T Consensus       200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~---d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La  275 (395)
T PF09295_consen  200 PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQ---DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA  275 (395)
T ss_pred             CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            3456678899999999999999999999999 76   7889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhh
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      .+|..+|+|++|+..+..+--.
T Consensus       276 ~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  276 ECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHhcCCHHHHHHHHhcCcCC
Confidence            9999999999999877754433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2003|consensus

Probab=98.09  E-value=0.00019  Score=71.92  Aligned_cols=129  Identities=20%  Similarity=0.214  Sum_probs=111.5

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .+..-.+++++.|..+-..|+.++|+++|-+.-.+- -+   ++.+++.+|.+|..+++..+|++++.++..+-|+++..
T Consensus       519 ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~n---n~evl~qianiye~led~aqaie~~~q~~slip~dp~i  594 (840)
T KOG2003|consen  519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LN---NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAI  594 (840)
T ss_pred             CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-Hh---hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHH
Confidence            344557899999999999999999999998755544 22   88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      +-.+|..|-+.|+-.+|.+++-...+..|.|-+..++|+.-+...+-..++..
T Consensus       595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~  647 (840)
T KOG2003|consen  595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN  647 (840)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999999999988999999999998888877766555555444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.02  E-value=9.2e-06  Score=52.23  Aligned_cols=32  Identities=25%  Similarity=0.449  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                      ++|+++|.+|..+|+|++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2376|consensus

Probab=98.02  E-value=0.00068  Score=70.00  Aligned_cols=101  Identities=17%  Similarity=0.197  Sum_probs=61.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      |++..+++..-.++.+.++|++|+..    |+.. +.........+..|-|+++++..++|+.+++   .+++.+.+.+.
T Consensus        43 pdd~~a~~cKvValIq~~ky~~ALk~----ikk~-~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~  114 (652)
T KOG2376|consen   43 PDDEDAIRCKVVALIQLDKYEDALKL----IKKN-GALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLE  114 (652)
T ss_pred             CCcHhhHhhhHhhhhhhhHHHHHHHH----HHhc-chhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHH
Confidence            44444444444444444444444422    2222 1111123333677788888888888888777   56666777778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      -+|++++++|+|++|+..|+..++-+.++
T Consensus       115 L~AQvlYrl~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen  115 LRAQVLYRLERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence            88888888888888888888776655443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.02  E-value=0.00033  Score=62.94  Aligned_cols=123  Identities=16%  Similarity=0.161  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DPKALFR   86 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~--~~kA~~~   86 (401)
                      .......|+.+...|+|.+|..+|.+++.-.-.+   ++..+..+|.+.+..+++..|....+...+.+|.  .+..+.-
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            3455678999999999999999999998743123   7889999999999999999999999999999984  4777888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN  135 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~  135 (401)
                      .|.+|-.+|++.+|...|+.++...|+ ++....++.....++...++.
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH
Confidence            999999999999999999999999886 455566666666666544433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.02  E-value=8.6e-05  Score=66.25  Aligned_cols=100  Identities=12%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHH
Q psy4703          63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK----------FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM  132 (401)
Q Consensus        63 y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~----------~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~  132 (401)
                      |+.|.+.++.....||.++.++++-|-++..+.+          +++|+.-|++|+.++|+...+...++.++...+...
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            7899999999999999999999999999998854          577899999999999999999999999999887654


Q ss_pred             HHH---HHHHHHHHHHHHHhhcCCCChhHHHHH
Q psy4703         133 QEN---EQLQNKVHNMFKYVFDTSAPMDKRVTA  162 (401)
Q Consensus       133 ~a~---~~~~~~~~~~~~~~~~~~~~~~~~~~a  162 (401)
                      ...   ..+..++.++|+.+.+..++.+...+.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks  119 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS  119 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            322   245577788888888855554444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=98.02  E-value=7.7e-05  Score=65.91  Aligned_cols=107  Identities=30%  Similarity=0.478  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHH--HHhhhcchhhHHHhhhhHHHHHHHHhh-ccCchhHHhhHHHHH--
Q psy4703         134 ENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNL--VVLAREMSGAEMLLKSGVAKQINTLLK-CETNEEIYLGEEDFI--  208 (401)
Q Consensus       134 a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L--~~l~~~~~gae~~~~e~~v~~L~~ll~-~~~~~e~~lA~e~fi--  208 (401)
                      +...+.+.+.++++..+..+. .+....+...+  +..+-++.+.+.+..++-++.+..++. ...+..+..+.-+.+  
T Consensus        36 ~~~~~~~~~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~a  114 (157)
T PF11701_consen   36 AREEFKEKISDFIESLLDEGE-MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSA  114 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHH-CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcccc-chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence            333455667777777776322 22333443333  445566677777767777877887776 234555555543333  


Q ss_pred             --------HHHHHhcHHHHHHHHc-CCChh-HHHHHHHhhhhc
Q psy4703         209 --------TSIIKQGVDILKRLYM-SKNEN-IRVRALVGLCKL  241 (401)
Q Consensus       209 --------~~i~~~gv~~Lk~l~~-s~~d~-i~~ralvgLckl  241 (401)
                              .+|.++|++||+++|+ ++++. |++||+|||||+
T Consensus       115 Ac~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen  115 ACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence                    6789999999999996 78888 999999999996

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.00  E-value=6.3e-06  Score=53.46  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=29.4

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy4703          69 DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY  101 (401)
Q Consensus        69 ~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~  101 (401)
                      +|++||+++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            378899999999999999999999999999886

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.99  E-value=0.00014  Score=68.92  Aligned_cols=97  Identities=15%  Similarity=0.165  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (401)
Q Consensus        50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~  126 (401)
                      .|+-|.-+++.|+|..|...|..=+..-|+.   +.|+|.+|++++.+|+|++|...|..+.+-.|+++.+.+.|-++..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7899999999999999999999999999976   6799999999999999999999999999999998877776666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703         127 IVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus       127 ~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .+.+....     ..+..+|+.+..
T Consensus       224 ~~~~l~~~-----d~A~atl~qv~k  243 (262)
T COG1729         224 SLGRLGNT-----DEACATLQQVIK  243 (262)
T ss_pred             HHHHhcCH-----HHHHHHHHHHHH
Confidence            55554433     224446777776

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.97  E-value=1.3e-05  Score=51.45  Aligned_cols=34  Identities=24%  Similarity=0.445  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus        47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      +.+|+++|.+|+.+|+|++|+.+|+++|+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3578888888888899999999999998888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.95  E-value=3.7e-05  Score=74.36  Aligned_cols=134  Identities=21%  Similarity=0.254  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PDD----   80 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--P~~----   80 (401)
                      +..+...|+.|-..|+|++|..+|.++..+..  .+....+..|.+.+.+|.+. ++++|+.++++|+++-  .++    
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a  113 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            56677888989999999999999999977652  11233566777777777666 9999999999999873  222    


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          81 PKALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTNK------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        81 ~kA~~~~a~a~~~l-g~~eeA~~~~~kal~l~P~~~------~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .+.+.++|.+|... |++++|+..|++|+++...+.      .....++.++..++++.+        +.++|+.+..
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~--------A~~~~e~~~~  183 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE--------AIEIYEEVAK  183 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH--------HHHHHHHHHH
Confidence            56799999999998 999999999999998743222      223334444444444433        3445666554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.94  E-value=0.00026  Score=61.10  Aligned_cols=100  Identities=20%  Similarity=0.252  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------------------CcchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------------SHERATCLKNRAAVYLKQNQNDKVIEDC   70 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~------------------~~~~~~~~~n~a~~y~klg~y~~Ai~~~   70 (401)
                      -+.+...|......|+...++..+.+++.+...+                  ......+...++..+...|++++|+..+
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            4455667888888999999999999999987411                  1334556666777788888999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703          71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH  108 (401)
Q Consensus        71 ~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal  108 (401)
                      .+++..+|.+-.+|..+-.+|..+|+..+|+..|+++.
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            99999999888888888899999999988888887764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.93  E-value=0.0001  Score=71.74  Aligned_cols=120  Identities=14%  Similarity=0.041  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--QNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg--~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      +.+..--.-..+++.++++.|...+..+-+.+ .+   ........|.+.+..|  .+.+|.-.|++..+..|..+..+.
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~ln  205 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQID-ED---SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLN  205 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CC---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHH
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cc---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHH
Confidence            45555556778899999999999999988888 43   4333333444444455  699999999998888888999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      .+|.+++.+|+|++|...++.+++.+|+++.+..++..+...++..
T Consensus       206 g~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  206 GLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999888887777666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.92  E-value=1.8e-05  Score=54.23  Aligned_cols=40  Identities=25%  Similarity=0.282  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      ++..+|.+|..+|++++|+..|+++++.+|+++.+++.+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4455555555555555555555555555555555555554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.92  E-value=2.4e-05  Score=53.63  Aligned_cols=42  Identities=19%  Similarity=0.289  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~  123 (401)
                      .+++.+|.+|..+|++++|+..|+++++.+|+|+.++..+++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            578899999999999999999999999999999999888865

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.91  E-value=2.6e-05  Score=49.82  Aligned_cols=33  Identities=30%  Similarity=0.475  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      ++++.+|.++..+|+|++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456666666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.87  E-value=0.00076  Score=70.56  Aligned_cols=137  Identities=16%  Similarity=0.105  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~   89 (401)
                      -.++-.+..+-..|+|++|+.+.++||+.. |+   ...+|...|.+|-+.|++.+|..+.+.|-.+|+.|--.-...+.
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt---~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aK  270 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PT---LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAK  270 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence            455778999999999999999999999999 77   89999999999999999999999999999999998877777889


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCC-cc------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          90 AYEAIGKFEEAYTDAKHIHRVEPTN-KA------IQ--PVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        90 a~~~lg~~eeA~~~~~kal~l~P~~-~~------~~--~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .++..|+.++|...+.....-+-+. ..      +|  ...++.+...+....+.+.+ ..+.++|+...+
T Consensus       271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~-~~v~k~f~~~~~  340 (517)
T PF12569_consen  271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF-HAVLKHFDDFEE  340 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHhc
Confidence            9999999999999988765544211 11      11  23345555555555554432 334444444443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.86  E-value=0.00045  Score=66.76  Aligned_cols=105  Identities=26%  Similarity=0.451  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC---
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLEIVP--DD---   80 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~kl-g~y~~Ai~~~~kAL~ldP--~~---   80 (401)
                      +..+.+ +-..++.+++++|+.+|++|+++..  .....-+.++.++|.+|... |++++|+..|.+|+++-.  +.   
T Consensus        75 a~~~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~  153 (282)
T PF14938_consen   75 AKAYEE-AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS  153 (282)
T ss_dssp             HHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence            344444 4445566699999999999998742  12233577899999999998 999999999999998732  12   


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          81 -PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        81 -~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                       ...+...|.++..+|+|++|+..|+++....-++
T Consensus       154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~  188 (282)
T PF14938_consen  154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN  188 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence             4567889999999999999999999998865443

>KOG1130|consensus

Probab=97.84  E-value=8.9e-05  Score=73.49  Aligned_cols=159  Identities=13%  Similarity=0.179  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPD--DPK   82 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l----dP~--~~k   82 (401)
                      ++-+.||.|+-.|+|+.||.+-+.-+.+.+  .++.-.-.++.|+|.||.-+|+|+.|+++|..++.+    ...  .+.
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            456789999999999999999887777753  232335578999999999999999999999986544    333  345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CC
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT------NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD---TS  153 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~------~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~  153 (401)
                      .-|.+|..|.-+.+|+.||.++++-+.|...      ...+...|+..+..++...++.. +   +....+...+   ..
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~-f---ae~hl~~s~ev~D~s  352 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY-F---AELHLRSSLEVNDTS  352 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH-H---HHHHHHHHHHhCCcc
Confidence            6789999999999999999999998776432      12344456677777776665544 1   1222233332   33


Q ss_pred             CChhHHHHHHHHHHHhhhcc
Q psy4703         154 APMDKRVTAVNNLVVLAREM  173 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~~~  173 (401)
                      .....+.........+|.++
T Consensus       353 gelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  353 GELTARDNLSDLILELGQED  372 (639)
T ss_pred             hhhhhhhhhHHHHHHhCCCc
Confidence            34455555555566666654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.82  E-value=0.00015  Score=70.52  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           6 MNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g--~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .+..-.....++..+..|  .+.+|.-.|++..+.. |.   .+.++..+|.|++.+|+|++|...+.+++..+|+++.+
T Consensus       162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-~~---t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~  237 (290)
T PF04733_consen  162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-GS---TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT  237 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred             CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-CC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence            344444555666666666  6999999999987776 44   67888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCccHH
Q psy4703          84 LFRRCQAYEAIGKF-EEAYTDAKHIHRVEPTNKAIQ  118 (401)
Q Consensus        84 ~~~~a~a~~~lg~~-eeA~~~~~kal~l~P~~~~~~  118 (401)
                      +.++..+...+|+. +.+.+.+.+....+|+++-+.
T Consensus       238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence            99999999999999 667778888888899875443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3785|consensus

Probab=97.78  E-value=0.00089  Score=65.48  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=85.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy4703          17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK   96 (401)
Q Consensus        17 n~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~   96 (401)
                      ..+..+.+|..|+..++-...++ .+  ....+-.-+|.||+.+|+|++|+..|+.+...+..+.+.+.++|.+++.+|.
T Consensus        30 edfls~rDytGAislLefk~~~~-~E--EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~  106 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLD-RE--EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ  106 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccc-hh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence            45677899999999999888777 32  2345566689999999999999999999999888889999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703          97 FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus        97 ~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~  130 (401)
                      |.+|.....++    |+++-....+-.+...+.+
T Consensus       107 Y~eA~~~~~ka----~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen  107 YIEAKSIAEKA----PKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence            99998776554    6766555555444444443

>KOG1130|consensus

Probab=97.77  E-value=0.00012  Score=72.67  Aligned_cols=130  Identities=18%  Similarity=0.189  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHH
Q psy4703           7 NDYNKLKESGNSAFKQGD--------------------YETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQND   64 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~--------------------y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~   64 (401)
                      ..+.++++.||.|..+|+                    ++.|+++|.+-+++..  .+.-....+|-|+|..|+-+|+|+
T Consensus       133 ~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~  212 (639)
T KOG1130|consen  133 LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFD  212 (639)
T ss_pred             hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHH
Confidence            356789999999998776                    4678888887777652  122235578999999999999999


Q ss_pred             HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC--cc--HHHHHHHHHHHHHHHH
Q psy4703          65 KVIEDCSKSLEIVPDD------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE--PTN--KA--IQPVLSRLFAIVTKRM  132 (401)
Q Consensus        65 ~Ai~~~~kAL~ldP~~------~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~--P~~--~~--~~~~L~~l~~~~~~~~  132 (401)
                      +||..-+.=|++...+      -.|+-++|.+|.-+|+|+.|+++|++.+.+.  -.+  .+  .-..|+..+..+++.+
T Consensus       213 ~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~  292 (639)
T KOG1130|consen  213 QAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQ  292 (639)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHH
Confidence            9999988877775432      4689999999999999999999999977542  222  22  2345778888888876


Q ss_pred             HHHH
Q psy4703         133 QENE  136 (401)
Q Consensus       133 ~a~~  136 (401)
                      ++..
T Consensus       293 kAI~  296 (639)
T KOG1130|consen  293 KAIT  296 (639)
T ss_pred             HHHH
Confidence            6655

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.76  E-value=0.0024  Score=57.54  Aligned_cols=151  Identities=16%  Similarity=0.119  Sum_probs=120.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q psy4703          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-IVPDDPKALFRRCQAYEAI   94 (401)
Q Consensus        16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~-ldP~~~kA~~~~a~a~~~l   94 (401)
                      +....+.=|.+.++..-.+.+... |+    ..-.+.+|.+...+|+|.+|...|.+++. +-.+++..+..++++.+..
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~A-pT----vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~  137 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAIA-PT----VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI  137 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhhc-hh----HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence            444555557777777777888888 64    44556799999999999999999999986 5678899999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhc
Q psy4703          95 GKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLARE  172 (401)
Q Consensus        95 g~~eeA~~~~~kal~l~P~--~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~  172 (401)
                      +++.+|...+++..+.+|.  .+.-...+++.+...+....++.        -|+.+.+--+..+.+..-..-|+.+||.
T Consensus       138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes--------afe~a~~~ypg~~ar~~Y~e~La~qgr~  209 (251)
T COG4700         138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES--------AFEVAISYYPGPQARIYYAEMLAKQGRL  209 (251)
T ss_pred             ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH--------HHHHHHHhCCCHHHHHHHHHHHHHhcch
Confidence            9999999999999999985  56677788888888877654444        5777777667777787788888888887


Q ss_pred             chhhHHH
Q psy4703         173 MSGAEML  179 (401)
Q Consensus       173 ~~gae~~  179 (401)
                      +++-.++
T Consensus       210 ~ea~aq~  216 (251)
T COG4700         210 REANAQY  216 (251)
T ss_pred             hHHHHHH
Confidence            6554444

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.76  E-value=0.0061  Score=69.13  Aligned_cols=124  Identities=10%  Similarity=0.048  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE----IVPDDPK   82 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~----ldP~~~k   82 (401)
                      +...|......|.+.|++++|+..|.+.....- |    +...|..+..+|.+.|++++|.+.+.+...    +.| +..
T Consensus       506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P----D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~v  580 (1060)
T PLN03218        506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP----DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHI  580 (1060)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHH
Confidence            466788888899999999999999999876651 4    467888899999999999999999999876    345 457


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVE-PTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~-P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      .|..+-.+|.+.|++++|.+.|+...+.+ +.+...+..+-..+...++..++..
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~  635 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS  635 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence            78888889999999999999999988876 3455666666666665555544433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.75  E-value=7.3e-05  Score=47.67  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      .+++.+|.+|+.+|+|++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            467778888888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4642|consensus

Probab=97.74  E-value=7.9e-05  Score=69.09  Aligned_cols=87  Identities=14%  Similarity=0.154  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                      +.--|.+|+.-++|..|+.+|.++|.++|..+..|.+++.+|+++.+|+.+..+++++++++|+....+..++......+
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            44457788888999999999999999999999999999999999999999999999999999999888888888877766


Q ss_pred             HHHHHHH
Q psy4703         130 KRMQENE  136 (401)
Q Consensus       130 ~~~~a~~  136 (401)
                      .+..+..
T Consensus        93 ~~~eaI~   99 (284)
T KOG4642|consen   93 GYDEAIK   99 (284)
T ss_pred             cccHHHH
Confidence            6654443

>KOG4555|consensus

Probab=97.72  E-value=0.00041  Score=58.83  Aligned_cols=65  Identities=23%  Similarity=0.259  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      +-..|.+....|+.+.|++-|.++|.+.|..+.+|.+|++++.-.|+.++|+.++++++++....
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            34457778889999999999999999999999999999999999999999999999999996543

>KOG0495|consensus

Probab=97.71  E-value=0.0006  Score=71.16  Aligned_cols=196  Identities=14%  Similarity=0.103  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      ...|...++...-.++.++|+.+++++++.. |+   ...+|..+|.++.++++.+.|...|...++..|+.+..|..++
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~---f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa  726 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSF-PD---FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA  726 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-Cc---hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence            3445566677777899999999999999999 76   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHH
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV  167 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~  167 (401)
                      ..-.+.|+.-.|...+.++.--+|.|...+...-++....+....+..        +..++++ .|.+.....   ..+-
T Consensus       727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~--------lmakALQecp~sg~LWa---EaI~  795 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL--------LMAKALQECPSSGLLWA---EAIW  795 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCccchhHH---HHHH
Confidence            999999999999999999999999998888777666666655544333        4444444 343322111   1111


Q ss_pred             HhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHH--HHHHHhcHHHHHHHHcCCCh
Q psy4703         168 VLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFI--TSIIKQGVDILKRLYMSKNE  228 (401)
Q Consensus       168 ~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi--~~i~~~gv~~Lk~l~~s~~d  228 (401)
                      +..|...      +   -..+-.|-+.+.|+++.++..-.+  ....+....|+...++-++|
T Consensus       796 le~~~~r------k---Tks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d  849 (913)
T KOG0495|consen  796 LEPRPQR------K---TKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD  849 (913)
T ss_pred             hccCccc------c---hHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            2122110      0   111111222246888866653333  44566677777776664444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.69  E-value=0.0023  Score=55.26  Aligned_cols=77  Identities=19%  Similarity=0.221  Sum_probs=69.7

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      ..+..+++.|...++.|+|.+|+..++.+....|..   ..+.+.+|.+|++.++|++|+..+++.++++|+++.+-..+
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            356788899999999999999999999999988754   67899999999999999999999999999999998876654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.68  E-value=0.0027  Score=55.12  Aligned_cols=121  Identities=23%  Similarity=0.255  Sum_probs=83.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CC
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAA-VYLKQNQNDKVIEDCSKSLEIVP---DD   80 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~-~y~klg~y~~Ai~~~~kAL~ldP---~~   80 (401)
                      .+.....+...|......+++..++..+..++... +.   ........+. ++...|+++.|+..+.+++..+|   ..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  166 (291)
T COG0457          91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALD-PD---PDLAEALLALGALYELGDYEEALELYEKALELDPELNEL  166 (291)
T ss_pred             ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-CC---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccch
Confidence            44556667777777777777888888888877776 44   2233333344 77788888888888888877666   45


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAIVT  129 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~-~~~~~~~L~~l~~~~~  129 (401)
                      ...++.++..+...+++++|+..+.+++...|. .......++..+...+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         167 AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            666677777777778888888888888887777 4555666655555544

>KOG2796|consensus

Probab=97.62  E-value=0.00043  Score=65.22  Aligned_cols=109  Identities=20%  Similarity=0.261  Sum_probs=94.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      |.+.......|....+.||-+.|-.+|+..-+...  .+-.....+..|.+.+|+-.++|..|...+++.+..||.++.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            66677778899999999999999999985443321  1123467788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      ..+.|.|++.+|+..+|++..+.++++.|..
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999999999974

>KOG3785|consensus

Probab=97.62  E-value=0.012  Score=57.82  Aligned_cols=115  Identities=17%  Similarity=0.117  Sum_probs=84.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhCC
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL--------------EIVP   78 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL--------------~ldP   78 (401)
                      ...|-.+|..|+|++|+..|+-+.+.+ .-   .+.++.|+|-|++-+|.|.+|.+...++-              +++.
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~---~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKD-DA---PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccC-CC---CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence            446889999999999999999988866 22   67899999999999999999988766542              1111


Q ss_pred             ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          79 ------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        79 ------------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                                  +...-...+|.++...-.|.+|+..|++++.-+|+...+...++-++..+.-.
T Consensus       137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy  201 (557)
T KOG3785|consen  137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY  201 (557)
T ss_pred             HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence                        11112233444555555699999999999998888777777777777665444

>PRK10941 hypothetical protein; Provisional

Probab=97.60  E-value=0.00069  Score=65.05  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=73.6

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~  123 (401)
                      ........|+-.+|.+.++|+.|+.+.+..+.++|+++.-+.-||-+|.++|.+..|..+++..++..|+++.+.....+
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            34566788899999999999999999999999999999999999999999999999999999999999999887665544


Q ss_pred             HH
Q psy4703         124 LF  125 (401)
Q Consensus       124 l~  125 (401)
                      +.
T Consensus       258 l~  259 (269)
T PRK10941        258 IH  259 (269)
T ss_pred             HH
Confidence            43

>KOG2376|consensus

Probab=97.50  E-value=0.0036  Score=64.84  Aligned_cols=120  Identities=13%  Similarity=0.215  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      .+.++..-|.+...|+|++|+..-.+.+... |+   ...+....-.|..+.+.|++|+...++-....-.+.. .|-++
T Consensus        12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pd---d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKA   86 (652)
T KOG2376|consen   12 LEALLTDLNRHGKNGEYEEAVKTANKILSIV-PD---DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKA   86 (652)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhcC-CC---cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHH
Confidence            4678888899999999999999999999999 76   7888888889999999999999554443322222222 27889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      -|.+++++.++|+.+++   ..++.+..+...-+++...++.+.++..
T Consensus        87 Yc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydeald  131 (652)
T KOG2376|consen   87 YCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALD  131 (652)
T ss_pred             HHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999998   5566677677878888888877766554

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.48  E-value=0.0017  Score=54.06  Aligned_cols=98  Identities=21%  Similarity=0.302  Sum_probs=77.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcC--CC------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTA--EE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-------V   77 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-------d   77 (401)
                      ...|...+..|-|++|...|.+|.+...  |.      .-.++-++..++.++..+|+|++++...+++|..       +
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            4567778889999999999999998864  21      2346677888999999999999999998888865       3


Q ss_pred             CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          78 PD----DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        78 P~----~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      .+    ++.+.+++|.++..+|+.++|+..|+++-++
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            32    4678899999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.44  E-value=0.00024  Score=45.40  Aligned_cols=32  Identities=25%  Similarity=0.479  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                      ++|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45666777777777777777777777776664

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.41  E-value=0.011  Score=51.18  Aligned_cols=106  Identities=31%  Similarity=0.445  Sum_probs=89.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Q psy4703          18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-DPKALFRRCQAYEAIGK   96 (401)
Q Consensus        18 ~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~-~~kA~~~~a~a~~~lg~   96 (401)
                      .+...|+++.|+..|.+++... |........+..++..+...++++.|+..+.+++...+. ...++..++..+...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALELD-PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence            8999999999999999998866 511136677777888889999999999999999999999 79999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          97 FEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        97 ~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      ++.|+..+..++...|........+...
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~  245 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALL  245 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence            9999999999999999843333333333

>KOG4340|consensus

Probab=97.41  E-value=0.0026  Score=61.09  Aligned_cols=130  Identities=12%  Similarity=0.068  Sum_probs=107.9

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL--------   74 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL--------   74 (401)
                      +.+|++-..+-..|..|+...+|..|.++|++.-.+. |.   .....+..|..+++.+.|..|+.......        
T Consensus        38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~---~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~  113 (459)
T KOG4340|consen   38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PE---LEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSR  113 (459)
T ss_pred             hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hH---HHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHH
Confidence            4677777788889999999999999999999999999 65   77777778888888888888877544222        


Q ss_pred             ----------------------HhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703          75 ----------------------EIVP--DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus        75 ----------------------~ldP--~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~  130 (401)
                                            +.-|  +.+....+.|-+.++.|+|++|++-|+.+++...-++-+...++-++...++
T Consensus       114 ~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~q  193 (459)
T KOG4340|consen  114 VLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ  193 (459)
T ss_pred             HHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh
Confidence                                  1124  5677888999999999999999999999999999899888889888888888


Q ss_pred             HHHHHH
Q psy4703         131 RMQENE  136 (401)
Q Consensus       131 ~~~a~~  136 (401)
                      +..+.+
T Consensus       194 yasALk  199 (459)
T KOG4340|consen  194 YASALK  199 (459)
T ss_pred             HHHHHH
Confidence            776655

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.38  E-value=0.011  Score=64.46  Aligned_cols=116  Identities=12%  Similarity=0.049  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q psy4703          12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKALFRRCQA   90 (401)
Q Consensus        12 l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-P~~~kA~~~~a~a   90 (401)
                      +......|.+.|++++|...|++...   +    +...|..+...|.+.|++++|+..|.+..+.. .-+...|..+..+
T Consensus       262 ~n~Li~~y~k~g~~~~A~~vf~~m~~---~----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a  334 (697)
T PLN03081        262 SCALIDMYSKCGDIEDARCVFDGMPE---K----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI  334 (697)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCC---C----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            34456677888888888888876422   1    46678888888888888888888888876542 2245677778888


Q ss_pred             HHHcCCHHHHHHHHHHHHhhC-CCCccHHHHHHHHHHHHHHHHHH
Q psy4703          91 YEAIGKFEEAYTDAKHIHRVE-PTNKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        91 ~~~lg~~eeA~~~~~kal~l~-P~~~~~~~~L~~l~~~~~~~~~a  134 (401)
                      +.++|++++|.+.+..+++.. +.|..+...|-..+...+....+
T Consensus       335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A  379 (697)
T PLN03081        335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA  379 (697)
T ss_pred             HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence            888888888888888887765 44556666666666666655443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.37  E-value=0.00018  Score=46.61  Aligned_cols=34  Identities=29%  Similarity=0.511  Sum_probs=30.9

Q ss_pred             HHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q psy4703          31 FYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE   68 (401)
Q Consensus        31 ~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~   68 (401)
                      +|++||+++ |+   ++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~-P~---n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELN-PN---NAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHC-CC---CHHHHHHHHHHHHHCcCHHhhcC
Confidence            489999999 77   99999999999999999999863

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.37  E-value=0.00098  Score=47.72  Aligned_cols=46  Identities=17%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      ..+|.+|.++.++|+|++|..+.+.+++++|+|.++......+...
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~   47 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK   47 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            3567788888888888888888888888888888877766555443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.34  E-value=0.0049  Score=67.08  Aligned_cols=123  Identities=13%  Similarity=0.030  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKAL   84 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-P~~~kA~   84 (401)
                      .+...|......|.+.|++++|+..|.+..+..- |    +...|..+..+|.+.|++++|.+.+..+++.. +.+...+
T Consensus       288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~  363 (697)
T PLN03081        288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI----DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN  363 (697)
T ss_pred             CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence            4567788899999999999999999999876531 4    46678889999999999999999999999886 5677888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ..+...|.+.|++++|...|++..+  | |...+..+-..+...++..++..
T Consensus       364 ~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~  412 (697)
T PLN03081        364 TALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVE  412 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999987653  3 55667777666666666544433

>KOG0551|consensus

Probab=97.32  E-value=0.0085  Score=58.31  Aligned_cols=92  Identities=16%  Similarity=0.214  Sum_probs=77.7

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~  120 (401)
                      ..+.-|..-|.-|++.++|..|+..|++.|+..-.+    +..|.+||.|.+.+|+|..|+.++.+++.++|.+..+...
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            477778889999999999999999999999986544    5579999999999999999999999999999999777766


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy4703         121 LSRLFAIVTKRMQENE  136 (401)
Q Consensus       121 L~~l~~~~~~~~~a~~  136 (401)
                      -+.+...+.....+..
T Consensus       159 ~Akc~~eLe~~~~a~n  174 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVN  174 (390)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            6666666666544433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.012  Score=56.59  Aligned_cols=98  Identities=16%  Similarity=0.166  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH----------------
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK----------------   72 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~k----------------   72 (401)
                      .+.-...+......|++.+|...|..+++.. |+   +..+...++.||+..|+.+.|...+..                
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~  209 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAA-PE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ  209 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cc---cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH
Confidence            3445677889999999999999999999999 76   788889999999999999887765442                


Q ss_pred             ------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          73 ------------------SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        73 ------------------AL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                                        .+..||++..+-+.+|..|...|++++|...+-..+..
T Consensus       210 i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         210 IELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                              22335556666666666666666666665555544444

>KOG0376|consensus

Probab=97.28  E-value=0.00055  Score=69.29  Aligned_cols=85  Identities=22%  Similarity=0.163  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      ..+-+-|..+++-++|+.|+..|.+||+++|+.+..+-+|+.++.+.++|..|+.|+.+|++++|....+...-+.....
T Consensus         5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~   84 (476)
T KOG0376|consen    5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA   84 (476)
T ss_pred             hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence            34566788889999999999999999999999999999999999999999999999999999999875554444444444


Q ss_pred             HHHHH
Q psy4703         128 VTKRM  132 (401)
Q Consensus       128 ~~~~~  132 (401)
                      +.+..
T Consensus        85 l~~~~   89 (476)
T KOG0376|consen   85 LGEFK   89 (476)
T ss_pred             HHHHH
Confidence            44443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.16  E-value=0.00074  Score=43.04  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD   79 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~   79 (401)
                      .+|+.+|.+|..+|++++|+.+++++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46777888888888888888888888888774

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.15  E-value=0.00098  Score=61.26  Aligned_cols=79  Identities=24%  Similarity=0.292  Sum_probs=72.8

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~  122 (401)
                      ...+.+++.||..|-.+|-+.-|.-+|++++.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+-+
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg  140 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  140 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999998765554433

>PLN03077 Protein ECB2; Provisional

Probab=97.15  E-value=0.013  Score=65.37  Aligned_cols=153  Identities=11%  Similarity=0.060  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--DDPKA   83 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP--~~~kA   83 (401)
                      .+...|......|.+.|+.++|+..|++.++..- |+    ...|..+-.++.+.|.+++|...|+...+..+  .+...
T Consensus       552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~  627 (857)
T PLN03077        552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD----EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH  627 (857)
T ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence            3455677777888888888888888888776431 43    34455555667788888888888888774322  24567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA  162 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a  162 (401)
                      |..+..+|.+.|++++|.+.+++. .+.|+ ..++..|-......+....        .+...+.+++ .|.+.......
T Consensus       628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~--------~e~~a~~l~~l~p~~~~~y~ll  697 (857)
T PLN03077        628 YACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVEL--------GELAAQHIFELDPNSVGYYILL  697 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHH--------HHHHHHHHHhhCCCCcchHHHH
Confidence            888888888888888888888764 35554 3444444333332222211        1223444455 44445555555


Q ss_pred             HHHHHHhhhcc
Q psy4703         163 VNNLVVLAREM  173 (401)
Q Consensus       163 ~~~L~~l~~~~  173 (401)
                      .+.+...|+.+
T Consensus       698 ~n~ya~~g~~~  708 (857)
T PLN03077        698 CNLYADAGKWD  708 (857)
T ss_pred             HHHHHHCCChH
Confidence            55555555543

>KOG3824|consensus

Probab=97.14  E-value=0.0071  Score=58.30  Aligned_cols=92  Identities=17%  Similarity=0.117  Sum_probs=77.2

Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703          41 EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (401)
Q Consensus        41 p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~  120 (401)
                      |.+...+.+-.+.|.-..+.|+.++|...|+.|+.++|.++.++...|+....-++.-+|-++|-+|+.++|.|.++..+
T Consensus       110 pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn  189 (472)
T KOG3824|consen  110 PAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN  189 (472)
T ss_pred             chhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence            33334455556667777789999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHHHH
Q psy4703         121 LSRLFAIVTKRM  132 (401)
Q Consensus       121 L~~l~~~~~~~~  132 (401)
                      -.+.........
T Consensus       190 R~RT~plV~~iD  201 (472)
T KOG3824|consen  190 RARTTPLVSAID  201 (472)
T ss_pred             hhccchHHHHHH
Confidence            776665555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.07  E-value=0.087  Score=52.46  Aligned_cols=170  Identities=13%  Similarity=0.189  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      +...-.+..-+...-.+|+++.|-.+..++-+.. ++  ........++...+..++|..|..-..++++..|.++.++.
T Consensus       115 e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~--~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlr  191 (400)
T COG3071         115 EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GD--DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLR  191 (400)
T ss_pred             cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CC--chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHH
Confidence            3445566777888889999999999999999985 43  25667778999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~-~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~  163 (401)
                      -.-++|...|+|.+......+.-+-.-- ++++...-......+-+...... -.....++++..-. .-.+.+.....+
T Consensus       192 La~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~-~~~gL~~~W~~~pr~lr~~p~l~~~~a  270 (400)
T COG3071         192 LALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN-GSEGLKTWWKNQPRKLRNDPELVVAYA  270 (400)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHhccHHhhcChhHHHHHH
Confidence            9999999999999999888776554332 22322222222221111111100 11223456666555 334455667777


Q ss_pred             HHHHHhhhcchhhHHH
Q psy4703         164 NNLVVLAREMSGAEML  179 (401)
Q Consensus       164 ~~L~~l~~~~~gae~~  179 (401)
                      ..++.++.++++.+.+
T Consensus       271 ~~li~l~~~~~A~~~i  286 (400)
T COG3071         271 ERLIRLGDHDEAQEII  286 (400)
T ss_pred             HHHHHcCChHHHHHHH
Confidence            7788888765554433

>KOG1915|consensus

Probab=97.04  E-value=0.04  Score=56.05  Aligned_cols=124  Identities=13%  Similarity=0.102  Sum_probs=105.9

Q ss_pred             HcCCHHHHHHHHHHHHhhcCCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy4703          21 KQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE   99 (401)
Q Consensus        21 ~~g~y~eAi~~y~~Al~l~~p~~-~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~ee   99 (401)
                      ...|.+.+-..|+.+|++. |++ =..+.+|...|.--.+..+...|....-.||...|.+ +.+...-..-.++++|+.
T Consensus       378 e~ed~ertr~vyq~~l~lI-PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLI-PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDR  455 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHH
Confidence            5678889999999999999 753 3477889999999999999999999999999999965 444445566789999999


Q ss_pred             HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703         100 AYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA  154 (401)
Q Consensus       100 A~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (401)
                      ....|++-++.+|.|..++...+.+...+++..++..        +|..+.+.|.
T Consensus       456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRa--------ifelAi~qp~  502 (677)
T KOG1915|consen  456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARA--------IFELAISQPA  502 (677)
T ss_pred             HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHH--------HHHHHhcCcc
Confidence            9999999999999999999999999999999865544        7888887553

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.03  E-value=0.081  Score=50.01  Aligned_cols=122  Identities=15%  Similarity=0.205  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCC
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--------QNDKVIEDCSKSLEIVPD   79 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg--------~y~~Ai~~~~kAL~ldP~   79 (401)
                      .-++....+-.+++.++|++|+...++-+.+. |+++.-.-+++.+|.+++..=        --.+|+..+...|..-|+
T Consensus        70 ~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn  148 (254)
T COG4105          70 SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN  148 (254)
T ss_pred             cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence            45678889999999999999999999999999 988889999999999988642        256788999999999997


Q ss_pred             CH-----HH------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703          80 DP-----KA------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus        80 ~~-----kA------------~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~  130 (401)
                      ..     +.            =...|+.|.+-|.|..|+.-++.+++--|+.+.+.+.|..+......
T Consensus       149 S~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~  216 (254)
T COG4105         149 SRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA  216 (254)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence            62     11            12357888999999999999999999988887777776666555443

>KOG2053|consensus

Probab=97.00  E-value=0.016  Score=62.64  Aligned_cols=113  Identities=14%  Similarity=0.127  Sum_probs=93.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy4703          17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK   96 (401)
Q Consensus        17 n~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~   96 (401)
                      ......+++..|+....+.++.. |+   ...+...-|..++++|++++|..+.+..-...+++-..+--+-.+|..+|+
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~-Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~   92 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKH-PN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK   92 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence            44677889999999999999999 87   666777789999999999999966665555667788888889999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703          97 FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        97 ~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a  134 (401)
                      +++|...|++++..+|+ .+....+-.++...+.+.+.
T Consensus        93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~q  129 (932)
T KOG2053|consen   93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQ  129 (932)
T ss_pred             hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 66666666666666655443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.99  E-value=0.049  Score=46.77  Aligned_cols=100  Identities=17%  Similarity=0.146  Sum_probs=73.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703          51 KNRAAVYLKQNQNDKVIEDCSKSLEIVP----------------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIH  108 (401)
Q Consensus        51 ~n~a~~y~klg~y~~Ai~~~~kAL~ldP----------------------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal  108 (401)
                      ...|......++...++..+.+++.+-.                      ....++..++..+...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            3345555667788888888888887742                      114567778888999999999999999999


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4703         109 RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF  150 (401)
Q Consensus       109 ~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~  150 (401)
                      .++|-+..++..+.+++...++...+...+......+.+.+.
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg  131 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG  131 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred             hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999998888766443343333333

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3081|consensus

Probab=96.94  E-value=0.017  Score=54.68  Aligned_cols=85  Identities=16%  Similarity=0.133  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          46 RATCLKNRAAVYLKQ----NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        46 ~~~~~~n~a~~y~kl----g~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      .-..+..+|.+|.+.    +.+.+|.-.|++.-+..|..+..+...+.|++.+|+|++|...++.++.-++++++...++
T Consensus       168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl  247 (299)
T KOG3081|consen  168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL  247 (299)
T ss_pred             hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            455666788887764    4689999999999887777889999999999999999999999999999999999888877


Q ss_pred             HHHHHHHHH
Q psy4703         122 SRLFAIVTK  130 (401)
Q Consensus       122 ~~l~~~~~~  130 (401)
                      -.+....+.
T Consensus       248 iv~a~~~Gk  256 (299)
T KOG3081|consen  248 IVLALHLGK  256 (299)
T ss_pred             HHHHHHhCC
Confidence            655554443

>KOG1941|consensus

Probab=96.91  E-value=0.12  Score=51.22  Aligned_cols=93  Identities=17%  Similarity=0.104  Sum_probs=76.9

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-----KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---  115 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~-----kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~---  115 (401)
                      .....+|.|++..+.++.+|.+++.++...+.+....+     .++..+|.++..++.|+.+++.|++|+.+..++.   
T Consensus        80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~  159 (518)
T KOG1941|consen   80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM  159 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce
Confidence            34567899999999999999999999999998864433     6788899999999999999999999999865442   


Q ss_pred             ---cHHHHHHHHHHHHHHHHHHHH
Q psy4703         116 ---AIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus       116 ---~~~~~L~~l~~~~~~~~~a~~  136 (401)
                         ++...|+.++..+++..++..
T Consensus       160 LElqvcv~Lgslf~~l~D~~Kal~  183 (518)
T KOG1941|consen  160 LELQVCVSLGSLFAQLKDYEKALF  183 (518)
T ss_pred             eeeehhhhHHHHHHHHHhhhHHhh
Confidence               456678888888888766544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.90  E-value=0.015  Score=52.69  Aligned_cols=102  Identities=17%  Similarity=0.090  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a   90 (401)
                      .....+..++..|++++|+..++.++... .+......+-.++|.+.+.+|.+++|+...+..-+-+- .+..--.+|.+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDi  168 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQT-KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhH
Confidence            34577888899999999999999999776 44456677778899999999999999987765433211 12235568999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          91 YEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        91 ~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      +...|+-++|...|+++++.++++
T Consensus       169 ll~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         169 LLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHcCchHHHHHHHHHHHHccCCh
Confidence            999999999999999999988443

>KOG1915|consensus

Probab=96.87  E-value=0.17  Score=51.71  Aligned_cols=132  Identities=12%  Similarity=0.096  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      -+...|...|.--..++++..|-..|.+|+..+ ..   +..+|...+.+-++.+....|...+++|+.+-|.--+.|+.
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK  146 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK  146 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence            344556666776778889999999999999999 54   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .--.-..+|+...|.+.|++=++..|+. +++...-+.....++..        ++..+|++..-
T Consensus       147 Y~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeie--------raR~IYerfV~  202 (677)
T KOG1915|consen  147 YIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIE--------RARSIYERFVL  202 (677)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHH--------HHHHHHHHHhe
Confidence            9988999999999999999999999974 45554444444444443        33445666554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.86  E-value=0.0058  Score=63.48  Aligned_cols=105  Identities=17%  Similarity=0.117  Sum_probs=76.4

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      +.-|+.+--+...|..+...|+.++|++.|++++.....-++.....++.+|.|++-+.+|++|..++.+.++.+. +.+
T Consensus       261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSk  339 (468)
T PF10300_consen  261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSK  339 (468)
T ss_pred             HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHH
Confidence            3457777778888888888999999999998888543111345667788889999999999999988888888653 444


Q ss_pred             H--HHHHHHHHHHcCCH-------HHHHHHHHHHH
Q psy4703          83 A--LFRRCQAYEAIGKF-------EEAYTDAKHIH  108 (401)
Q Consensus        83 A--~~~~a~a~~~lg~~-------eeA~~~~~kal  108 (401)
                      +  .|..|.|+..+|+.       ++|...++++-
T Consensus       340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            4  35567888888888       55555555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0545|consensus

Probab=96.85  E-value=0.019  Score=53.84  Aligned_cols=82  Identities=15%  Similarity=0.157  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--------VPD----------DPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l--------dP~----------~~kA~~~~a~a~~~lg~~eeA~~~~~ka  107 (401)
                      ...++...|+-++++|+|.+|...|..||..        .|.          ....+.+.++|++..|+|-++++.+..+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3467788999999999999999999998754        233          3456899999999999999999999999


Q ss_pred             HhhCCCCccHHHHHHHHHHH
Q psy4703         108 HRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus       108 l~l~P~~~~~~~~L~~l~~~  127 (401)
                      +..+|.|..+...-++++..
T Consensus       257 L~~~~~nvKA~frRakAhaa  276 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAA  276 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHh
Confidence            99999997766655554443

>KOG4507|consensus

Probab=96.80  E-value=0.0025  Score=65.94  Aligned_cols=108  Identities=16%  Similarity=0.162  Sum_probs=95.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy4703          14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA   93 (401)
Q Consensus        14 ~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~   93 (401)
                      ..|......|+...|+.++..|+... |.  ....-..++|.+.++-+-...|-....++|.++...+-.++-+|.+|+.
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~-p~--~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~  688 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLA-PL--QQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA  688 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccC-hh--hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH
Confidence            33444456899999999999999999 74  2455678999999999999999999999999998888899999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          94 IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        94 lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      +.+.+.|++.|+.|+.++|+++.+.+.|..+
T Consensus       689 l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  689 LKNISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            9999999999999999999999998887655

>KOG2053|consensus

Probab=96.79  E-value=0.29  Score=53.29  Aligned_cols=173  Identities=14%  Similarity=0.140  Sum_probs=114.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      +...|+..-+..-.|-.+++.|++++|..+.+ ++...+++   +-..+--+-.||..++++++|...|++++..+|. .
T Consensus        36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e  110 (932)
T KOG2053|consen   36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E  110 (932)
T ss_pred             HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H
Confidence            45678888888888999999999999995555 44444244   5666777899999999999999999999999999 8


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCC---CCh
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-IQPVLSRLFAIVTKRMQENE-QLQNKVHNMFKYVFDTS---APM  156 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~-~~~~L~~l~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~---~~~  156 (401)
                      +-++.+=.+|...+.|.+-.+.--+..+.-|+++- .|....-+...+........ ..-..+..|++..+..+   .+.
T Consensus       111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~  190 (932)
T KOG2053|consen  111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE  190 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence            88888889999999998766665555667787753 23333333322221111111 11233455667776644   122


Q ss_pred             hHHHHHHHHHHHhhhcchhhHHH
Q psy4703         157 DKRVTAVNNLVVLAREMSGAEML  179 (401)
Q Consensus       157 ~~~~~a~~~L~~l~~~~~gae~~  179 (401)
                      .+.......|-.++++.++.+.+
T Consensus       191 aE~~Lyl~iL~~~~k~~eal~~l  213 (932)
T KOG2053|consen  191 AEIILYLLILELQGKYQEALEFL  213 (932)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHH
Confidence            33333334444555554444444

>KOG1941|consensus

Probab=96.78  E-value=0.009  Score=58.79  Aligned_cols=127  Identities=13%  Similarity=0.216  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C---
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----D---   80 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~----~---   80 (401)
                      ..+...|+++...+.|+.++++|+.|+....  .+.-..-.++..+|..|-.+.||++|+-+..+|.++-..    +   
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            3455689999999999999999999998762  222345578889999999999999999999999887432    1   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCccH----HHHHHHHHHHHHHHHHHHH
Q psy4703          81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE--PTNKAI----QPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        81 ---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~--P~~~~~----~~~L~~l~~~~~~~~~a~~  136 (401)
                         .-++|+++.++..+|+.-.|.++++++.++.  ..|..+    ...++.++...++.+.+-.
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~  267 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR  267 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence               3468899999999999999999999997763  344333    3456677777776655444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.77  E-value=0.0025  Score=39.99  Aligned_cols=31  Identities=26%  Similarity=0.509  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                      |++++|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5666666666666666666666666666665

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.74  E-value=0.0068  Score=43.37  Aligned_cols=41  Identities=29%  Similarity=0.320  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      ..++.+|..++++|+|++|..+++.+|+++|+|..|.--..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            35778999999999999999999999999999988765443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.74  E-value=0.0068  Score=60.57  Aligned_cols=96  Identities=16%  Similarity=0.280  Sum_probs=77.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcC-------CCC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTA-------EES-------HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP   78 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-------p~~-------~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP   78 (401)
                      ...|...+++++|..|+.-|.-|++++.       |..       ....-.-..+..||+++++.+-|+...-+.|-++|
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            3456677788888888888888887763       111       11223456789999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIH  108 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal  108 (401)
                      .++.-|++.|.++..+.+|.+|.+.+--+.
T Consensus       260 ~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  260 SYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998876553

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.74  E-value=0.017  Score=47.73  Aligned_cols=95  Identities=18%  Similarity=0.260  Sum_probs=73.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHH
Q psy4703          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-----------NDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus        15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~-----------y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .+..+|.+|++-+|++..+..+... ++......++..-|.+++++..           .-.++++|.++..+.|..+..
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h-~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~   80 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRH-GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS   80 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHc-cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence            5778999999999999999999998 6533333667777777765432           345888888888888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      +|.+|.-+-...-|++++.-.+++|.+
T Consensus        81 L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   81 LFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            888887776677788888888887765

>PLN03077 Protein ECB2; Provisional

Probab=96.71  E-value=0.078  Score=59.18  Aligned_cols=105  Identities=14%  Similarity=0.080  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHH----------------------------------HHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCL----------------------------------KNRAA   55 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~----------------------------------~n~a~   55 (401)
                      ..|......+.+.|++++|+..|.+.+....|+   ...+.                                  ..+-.
T Consensus       456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd---~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~  532 (857)
T PLN03077        456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN---SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD  532 (857)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC---HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence            345555666777777777777777776543243   21111                                  12335


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCccHHHHH
Q psy4703          56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR--VEPTNKAIQPVL  121 (401)
Q Consensus        56 ~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~--l~P~~~~~~~~L  121 (401)
                      .|.+.|+.++|...|+..    +.+...|..+...|.+.|+.++|+..|++..+  +.|+.......+
T Consensus       533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll  596 (857)
T PLN03077        533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL  596 (857)
T ss_pred             HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence            677778888888877765    45777888888899999999999999988776  456655544444

>KOG1308|consensus

Probab=96.70  E-value=0.00096  Score=64.98  Aligned_cols=83  Identities=14%  Similarity=0.138  Sum_probs=70.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHH
Q psy4703          54 AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ  133 (401)
Q Consensus        54 a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~  133 (401)
                      |.-.+..|+++.|++.|..+|+++|.....|-.|+.+++++++...|+.+|..+++++|+...-...-+.....++....
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            44455678899999999999999999999999999999999999999999999999999987666666666666666655


Q ss_pred             HHH
Q psy4703         134 ENE  136 (401)
Q Consensus       134 a~~  136 (401)
                      +.+
T Consensus       201 aa~  203 (377)
T KOG1308|consen  201 AAH  203 (377)
T ss_pred             HHH
Confidence            444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.67  E-value=0.091  Score=58.71  Aligned_cols=100  Identities=14%  Similarity=0.105  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESH--ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD------DP   81 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~--~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~------~~   81 (401)
                      ......|..++..|++++|..++.+++... |...  ....++..+|.++...|++++|...+.+++.....      ..
T Consensus       453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        453 EFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            344557888899999999999999999866 4311  13456778999999999999999999999876432      13


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      .++..+|.++...|++++|...+++++.+
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            46778899999999999999999999886

>KOG2610|consensus

Probab=96.66  E-value=0.011  Score=57.69  Aligned_cols=102  Identities=15%  Similarity=0.034  Sum_probs=58.9

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV-TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l-~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      ..|.+..+++-.-..+|-.|+...-...+.+.+.. + |+.|....+.-..+-++...|-|++|.....++++++|.+..
T Consensus       132 d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn-~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~W  210 (491)
T KOG2610|consen  132 DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN-ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCW  210 (491)
T ss_pred             hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC-CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchH
Confidence            34444445555555555555555555555555544 3 443444455555566666666666666666666666666666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKH  106 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~k  106 (401)
                      +....+.++...|++.++.+...+
T Consensus       211 a~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  211 ASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHh
Confidence            666666666666666666655443

>KOG4507|consensus

Probab=96.65  E-value=0.04  Score=57.34  Aligned_cols=110  Identities=12%  Similarity=0.104  Sum_probs=90.2

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      +.+|.++.-+...+-..-.+|+..+|+.+|..++... |++. .-..+..+|.++.++|...+|--....|++-.|....
T Consensus       207 q~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~-~~h~-kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~  284 (886)
T KOG4507|consen  207 QKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFS-SRHN-KDIALLSLATVLHRAGFSADAAVILHAALDDADFFTS  284 (886)
T ss_pred             hcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhC-Cccc-ccchhhhHHHHHHHcccccchhheeehhccCCccccc
Confidence            4555555444444444456899999999999999999 5422 3345677999999999999999888888888887777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      -++.+|+++..++.|...+.+|..+.+.+|.-
T Consensus       285 n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  285 NYYTLGNIYAMLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             cceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence            79999999999999999999999999999965

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.61  E-value=0.03  Score=44.64  Aligned_cols=65  Identities=25%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--ccHHHHHHHHHHHHHH
Q psy4703          66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTK  130 (401)
Q Consensus        66 Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~--~~~~~~L~~l~~~~~~  130 (401)
                      .+..+++.++.+|++..+.+.+|..+...|++++|+..+-.+++.+|+.  ..+...+-.+...++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4677889999999999999999999999999999999999999998865  5555555555555544

>KOG2471|consensus

Probab=96.59  E-value=0.0054  Score=62.31  Aligned_cols=124  Identities=11%  Similarity=0.062  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhcCCC----C-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h---
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKA-LKVTAEE----S-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-I---   76 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~A-l~l~~p~----~-~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~-l---   76 (401)
                      +++..+.-+.+.++..|+|..|...+... |... |.    + -....+|.|+|-++++++.|.-++.+|.+||+ .   
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~-~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q  316 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKE-AGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ  316 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccc-cCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence            56778888999999999999999887653 2222 22    0 12345678999999999999999999999996 1   


Q ss_pred             -----CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          77 -----VP---------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        77 -----dP---------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                           .|         .....+|+.|..|+..|+.-.|.++|.++.+..-.||.+|..++.+.....+.
T Consensus       317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~  385 (696)
T KOG2471|consen  317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQK  385 (696)
T ss_pred             HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence                 11         34678999999999999999999999999999999999999998877655443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.59  E-value=0.043  Score=53.01  Aligned_cols=115  Identities=11%  Similarity=0.029  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK-QNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k-lg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~   89 (401)
                      .|....+..-+.+..+.|-..|.+|.+.. +   ....+|...|..-+. .++.+.|...|+.+++..|.+...|.....
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~---~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-R---CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C---S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-C---CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            45666777777777999999999998544 3   366788888888666 567777999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHH
Q psy4703          90 AYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVT  129 (401)
Q Consensus        90 a~~~lg~~eeA~~~~~kal~l~P~~~---~~~~~L~~l~~~~~  129 (401)
                      .+..+|+.+.|...|++++..-|.+.   .++...-+.....+
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G  121 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG  121 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence            99999999999999999998877654   34444444443333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.56  E-value=0.0036  Score=37.58  Aligned_cols=30  Identities=27%  Similarity=0.506  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEP  112 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P  112 (401)
                      +++++|.++..+|++++|+.+|+++++++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344555555555555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4340|consensus

Probab=96.52  E-value=0.028  Score=54.21  Aligned_cols=85  Identities=12%  Similarity=0.115  Sum_probs=76.9

Q ss_pred             HHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy4703          19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE   98 (401)
Q Consensus        19 ~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~e   98 (401)
                      +.+..+|.+||++..--.+.. |.   +...+..+|.||+...+|..|..+|++.-.+.|...+..+..++.+.+.+.|.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~-p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A   95 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERS-PR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA   95 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-cc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence            467788999999999888888 65   67778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy4703          99 EAYTDAKHI  107 (401)
Q Consensus        99 eA~~~~~ka  107 (401)
                      +|+......
T Consensus        96 DALrV~~~~  104 (459)
T KOG4340|consen   96 DALRVAFLL  104 (459)
T ss_pred             HHHHHHHHh
Confidence            999876554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.49  E-value=0.056  Score=60.41  Aligned_cols=125  Identities=14%  Similarity=0.093  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--------   79 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p--~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~--------   79 (401)
                      ..+...|..+...|++++|...|.+++.....  ........+.++|.+++..|++++|...+.+++.+...        
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            45567888899999999999999999987521  11123456788999999999999999999999886321        


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----ccHHHHHHHHHHHHHHHHHH
Q psy4703          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-----KAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~-----~~~~~~L~~l~~~~~~~~~a  134 (401)
                      ....+..+|.++...|++++|...+++++.+....     ......++.+....++...+
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  631 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA  631 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence            23346678999999999999999999998864421     12233344455544444443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.48  E-value=0.039  Score=51.28  Aligned_cols=96  Identities=18%  Similarity=0.173  Sum_probs=73.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhhcC---CCCcchHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC------CCHH
Q psy4703          19 AFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQ-------NDKVIEDCSKSLEIVP------DDPK   82 (401)
Q Consensus        19 ~~~~g~y~eAi~~y~~Al~l~~---p~~~~~~~~~~n~a~~y~klg~-------y~~Ai~~~~kAL~ldP------~~~k   82 (401)
                      +.....+++|+..|.-|+-...   +++...+.++..+|.+|..+++       +.+|+..|.++++...      +...
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            3445678999999988875431   2334578889999999999998       4557777777776553      2367


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      .+|.+|.....+|++++|.++|.+++..--.+
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            88999999999999999999999999754333

>smart00028 TPR Tetratricopeptide repeats

Probab=96.43  E-value=0.0049  Score=36.96  Aligned_cols=32  Identities=34%  Similarity=0.505  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD   79 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~   79 (401)
                      .++.++|.+++.++++++|+.++.++++++|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            36778888888888888888888888888775

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.40  E-value=0.0056  Score=39.90  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIH  108 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal  108 (401)
                      +|.++|.+|..+|+|++|+..|++++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555666666666666666666644

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.39  E-value=0.0063  Score=39.65  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703          50 LKNRAAVYLKQNQNDKVIEDCSKSL   74 (401)
Q Consensus        50 ~~n~a~~y~klg~y~~Ai~~~~kAL   74 (401)
                      |.++|.+|.++|+|++|+.+|+++|
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.34  E-value=0.0073  Score=37.80  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      +++++|.||.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56777888888888888888888888777753

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=0.054  Score=51.67  Aligned_cols=80  Identities=20%  Similarity=0.291  Sum_probs=71.2

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      ....+..|+=..|...++++.|..+.++.+.++|.++.-+.-+|-+|.++|.+..|+++++..++..|+++.+...-.++
T Consensus       179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            45667778888899999999999999999999999999999999999999999999999999999999988765544333

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.32  E-value=0.0054  Score=56.88  Aligned_cols=61  Identities=18%  Similarity=0.352  Sum_probs=50.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703          56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (401)
Q Consensus        56 ~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~  116 (401)
                      ...+.++.+.|.+.|++++++-|.+...|+|+|....+.|+++.|.+.|++.++++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            3446678888888888888888888888888888888888888888888888888887643

>KOG4814|consensus

Probab=96.31  E-value=0.037  Score=58.08  Aligned_cols=99  Identities=26%  Similarity=0.276  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      .+.+.+..+|+..+|..+++.|...+.-. |.   ....+....+++.||+++.+.+.|.+++.+|=+.||.++-.-+..
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i-~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDI-ISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            56788999999999999999999999887 53   234678899999999999999999999999999999999888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      -++....|.-++|+....+....
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            89999999999999998877654

>KOG3364|consensus

Probab=96.30  E-value=0.04  Score=47.10  Aligned_cols=83  Identities=11%  Similarity=0.116  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQ---NDKVIEDCSKSLE-IVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~---y~~Ai~~~~kAL~-ldP~-~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~  120 (401)
                      .....+|+|.++.+..+   -.+.+..++..++ -.|. .-..+|.++..+.++++|+.|+++....++.+|+|+++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            56678899999987654   6678889999986 4453 45678999999999999999999999999999999998876


Q ss_pred             HHHHHHHH
Q psy4703         121 LSRLFAIV  128 (401)
Q Consensus       121 L~~l~~~~  128 (401)
                      -..+...+
T Consensus       111 k~~ied~i  118 (149)
T KOG3364|consen  111 KETIEDKI  118 (149)
T ss_pred             HHHHHHHH
Confidence            65555444

>KOG2796|consensus

Probab=96.14  E-value=0.11  Score=49.35  Aligned_cols=121  Identities=12%  Similarity=0.087  Sum_probs=97.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCC--CCHHHHHH
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL----EIVP--DDPKALFR   86 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL----~ldP--~~~kA~~~   86 (401)
                      +...+.+.-.|.|.-.+..|.+.++.+ |  +..+.+...+|.+.++.||-+.|-.+++.+-    .++.  ...-.+.+
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~-~--e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYY-P--EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhC-C--cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            345667778899999999999999998 4  3488999999999999999999999999543    3333  34456777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      .+.+|...++|.+|...|.+++..||.++.+..+-+-+.--+++...+.+
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK  307 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK  307 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH
Confidence            78888888999999999999999999999888877777766666655444

>PRK10941 hypothetical protein; Provisional

Probab=96.14  E-value=0.065  Score=51.54  Aligned_cols=77  Identities=21%  Similarity=0.261  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a   90 (401)
                      .+.+.-..+.+.++|+.|+.+.+..+.+. |+   .+.-+.-||.+|.++|.+..|+.+++.-++..|+++.+-.-+.++
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFD-PE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            34566678899999999999999999999 77   788889999999999999999999999999999999887666554


Q ss_pred             H
Q psy4703          91 Y   91 (401)
Q Consensus        91 ~   91 (401)
                      .
T Consensus       259 ~  259 (269)
T PRK10941        259 H  259 (269)
T ss_pred             H
Confidence            3

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.13  E-value=0.089  Score=54.70  Aligned_cols=96  Identities=17%  Similarity=0.072  Sum_probs=79.7

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCH
Q psy4703          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKALFRRCQAYEAIGKF   97 (401)
Q Consensus        22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~----~kA~~~~a~a~~~lg~~   97 (401)
                      ..+.+.|.+......+.. |+   ..-.++..|..+...|+.++|++.+++++......    .-.++-+|.++.-+.+|
T Consensus       246 ~~~~~~a~~lL~~~~~~y-P~---s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w  321 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRY-PN---SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW  321 (468)
T ss_pred             CCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence            456678888899999999 76   78888999999999999999999999998644333    33588999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          98 EEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        98 eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      ++|..+|.+..+.+.-++.....+
T Consensus       322 ~~A~~~f~~L~~~s~WSka~Y~Y~  345 (468)
T PF10300_consen  322 EEAAEYFLRLLKESKWSKAFYAYL  345 (468)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHH
Confidence            999999999999776655554443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3081|consensus

Probab=96.09  E-value=0.27  Score=46.86  Aligned_cols=91  Identities=14%  Similarity=0.133  Sum_probs=76.6

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy4703          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY  101 (401)
Q Consensus        22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~  101 (401)
                      .+.+.+|.-+|++.-+..+|    .+.+....|.|++.+++|++|....+.+|.-+++++..+.++-.+-..+|.-.++.
T Consensus       186 gek~qdAfyifeE~s~k~~~----T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPP----TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             chhhhhHHHHHHHHhcccCC----ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence            45688999999998886624    57888999999999999999999999999999999999999999999999998877


Q ss_pred             HHHH-HHHhhCCCCcc
Q psy4703         102 TDAK-HIHRVEPTNKA  116 (401)
Q Consensus       102 ~~~~-kal~l~P~~~~  116 (401)
                      ..+- +....+|+++-
T Consensus       262 ~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  262 ERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHHHhcCCcchH
Confidence            6654 44455666543

>KOG1070|consensus

Probab=96.01  E-value=0.43  Score=54.42  Aligned_cols=109  Identities=15%  Similarity=0.053  Sum_probs=70.9

Q ss_pred             HHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy4703          20 FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE   99 (401)
Q Consensus        20 ~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~ee   99 (401)
                      ..-|.-+.-.+.|++|.+.+ .    ....|..++-.|.+-+.+++|.+.++..++--....+.|..+|..++..++-+.
T Consensus      1508 n~yG~eesl~kVFeRAcqyc-d----~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1508 NAYGTEESLKKVFERACQYC-D----AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred             HhhCcHHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHH
Confidence            33344555666677777776 1    356677777777777777777777777777666666777777777777777777


Q ss_pred             HHHHHHHHHhhCCC--CccHHHHHHHHHHHHHHHHH
Q psy4703         100 AYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRMQ  133 (401)
Q Consensus       100 A~~~~~kal~l~P~--~~~~~~~L~~l~~~~~~~~~  133 (401)
                      |...+++|++--|.  +.++....+++.-..++..+
T Consensus      1583 a~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1583 ARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred             HHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchh
Confidence            77777777777776  44444445555555444444

>KOG1586|consensus

Probab=95.99  E-value=0.65  Score=43.53  Aligned_cols=141  Identities=18%  Similarity=0.216  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----   80 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-----   80 (401)
                      -++.+..-||.|--..+|..|=..|-++-++..  ....+.+..|.--+.||.+ .+..+|+.+.+++|++-.+-     
T Consensus        33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~  111 (288)
T KOG1586|consen   33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTM  111 (288)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHH
Confidence            345556667777777888888888888766541  1123456777777777755 59999999999999986432     


Q ss_pred             -HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          81 -PKALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        81 -~kA~~~~a~a~~~l-g~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                       ++-+.-+|.+|..- .+++.|+.+|+.+-+....+... ..-.++.....++.....++ .++...|+.+..
T Consensus       112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-ssANKC~lKvA~yaa~leqY-~~Ai~iyeqva~  182 (288)
T KOG1586|consen  112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-SSANKCLLKVAQYAAQLEQY-SKAIDIYEQVAR  182 (288)
T ss_pred             HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence             34466788888754 99999999999998876544322 12223333333333333333 334445555544

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.88  E-value=1  Score=50.46  Aligned_cols=115  Identities=12%  Similarity=0.159  Sum_probs=92.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ----N---QNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus        16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl----g---~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      ..+++....|+.|+..|++...-- |++..-..+.+..|.+.+..    |   .+.+|+..|++.-. .|.-|--|...|
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  559 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA  559 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence            345677789999999999999998 88777888889899888753    2   47777777766433 466677799999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHH
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM  132 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~  132 (401)
                      .+|..+|+|+|-+++|.-|++..|+.|.+...-..+-..+.+..
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  603 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESL  603 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988776665555555543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.85  E-value=0.99  Score=44.18  Aligned_cols=127  Identities=11%  Similarity=0.115  Sum_probs=100.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-----
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-VP-----   78 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-dP-----   78 (401)
                      ....+..+...+..+.+.|+++.|...+.++.....+.....+.+.+..+......|+..+|+......+.. ..     
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            345667888999999999999999999999988762222236678888899999999999999999888871 10     


Q ss_pred             ----------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          79 ----------------------------DDPKALFRRCQAYEAI------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        79 ----------------------------~~~kA~~~~a~a~~~l------g~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                                                  ...++++.+|.-...+      +.+++++..|+++++++|+...++..++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                        1146677788877778      889999999999999999988888877777


Q ss_pred             HHHHHHH
Q psy4703         125 FAIVTKR  131 (401)
Q Consensus       125 ~~~~~~~  131 (401)
                      ...+-+.
T Consensus       302 ~~~~~~~  308 (352)
T PF02259_consen  302 NDKLLES  308 (352)
T ss_pred             HHHHHHh
Confidence            6665443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.77  E-value=0.16  Score=45.76  Aligned_cols=99  Identities=19%  Similarity=0.077  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH----
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PDDPK----   82 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--P~~~k----   82 (401)
                      ...+...|+.|.+.|++++|++.|.++.+-+ .........+++.-.+.+..++|..+....+++-.+-  +.+..    
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            4577899999999999999999999998887 5445577889999999999999999999999986653  23332    


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIH  108 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal  108 (401)
                      .....|..++..++|.+|...|-.+.
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccC
Confidence            23345677788899999988876553

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3824|consensus

Probab=95.76  E-value=0.035  Score=53.67  Aligned_cols=79  Identities=19%  Similarity=0.219  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      +..-...+....+.|+.+.|...|..|+.++ |+   ++.++...|.....-++.-+|-.+|.+||.++|.+.+|+.+|+
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlala-P~---~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALA-PT---NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcC-CC---CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            4444566777889999999999999999999 77   8999999999888888999999999999999999999999988


Q ss_pred             HHH
Q psy4703          89 QAY   91 (401)
Q Consensus        89 ~a~   91 (401)
                      ...
T Consensus       192 RT~  194 (472)
T KOG3824|consen  192 RTT  194 (472)
T ss_pred             ccc
Confidence            643

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.70  E-value=0.094  Score=40.55  Aligned_cols=68  Identities=19%  Similarity=0.244  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l   76 (401)
                      .+....+.|..++...+.++|+..++++++.. ++.++...++-.+..+|...|+|.+.+.+.-.=+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKI-TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999999998 776778888888999999999999999887665554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2047|consensus

Probab=95.69  E-value=1.6  Score=46.42  Aligned_cols=138  Identities=11%  Similarity=0.108  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-C-------Ccc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAE-E-------SHE------RATCLKNRAAVYLKQNQNDKVIEDCSKSL   74 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p-~-------~~~------~~~~~~n~a~~y~klg~y~~Ai~~~~kAL   74 (401)
                      ++.|.+-|..-++..+++.|+.+...|..+-.+ .       .|.      ...+|...+..--..|-++..-..|+++|
T Consensus       425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii  504 (835)
T KOG2047|consen  425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII  504 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            566777777778888888888888888765421 0       111      23456666666777888999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP--TNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        75 ~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P--~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ++.=..|....+.|..+..-.-|++|.+.|++.+.+-|  +-.+++...-  .+-.+++....-   .++.+.|+.+++
T Consensus       505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL--tkfi~rygg~kl---EraRdLFEqaL~  578 (835)
T KOG2047|consen  505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL--TKFIKRYGGTKL---ERARDLFEQALD  578 (835)
T ss_pred             HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH--HHHHHHhcCCCH---HHHHHHHHHHHh
Confidence            99988999999999999999999999999999998865  3344444332  122222222211   567889999998

>KOG2610|consensus

Probab=95.67  E-value=0.15  Score=50.03  Aligned_cols=119  Identities=9%  Similarity=0.005  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHH
Q psy4703          12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-VPDD---PKALFRR   87 (401)
Q Consensus        12 l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-dP~~---~kA~~~~   87 (401)
                      ....+...+.+|++.+|-..+++.++-. |+   +..++..--.+|+-+|+...-...+++++-. +|+-   .-.+-.+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~-Pt---Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmy  181 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDY-PT---DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMY  181 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhC-ch---hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHH
Confidence            3345666788999999999999999999 76   6666666777888899999999999999987 5554   4445557


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a  134 (401)
                      +..++..|-|++|.+..+++++++|.|.=+...+.-+.+..++..+.
T Consensus       182 aFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg  228 (491)
T KOG2610|consen  182 AFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEG  228 (491)
T ss_pred             HhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhH
Confidence            88899999999999999999999999976666666666655554433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.21  Score=48.23  Aligned_cols=124  Identities=13%  Similarity=0.138  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      .-+.-+......|++.+|...+..++..+|++..+...++.+|...|+.+.|...+.    ..|.+.......+ +...+
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~----~lP~~~~~~~~~~-l~a~i  210 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA----ALPLQAQDKAAHG-LQAQI  210 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH----hCcccchhhHHHH-HHHHH
Confidence            344567778899999999999999999999999999999999999999999887654    4565544333333 22222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhcchhhHHH
Q psy4703         129 TKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML  179 (401)
Q Consensus       129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~gae~~  179 (401)
                      .-..++..  .....+.-.++-..|.+.+.+...+..+...++.+++.+.+
T Consensus       211 ~ll~qaa~--~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L  259 (304)
T COG3118         211 ELLEQAAA--TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL  259 (304)
T ss_pred             HHHHHHhc--CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            22222111  01123333444457889999999999999999976666555

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.35  E-value=0.2  Score=51.47  Aligned_cols=56  Identities=11%  Similarity=0.043  Sum_probs=28.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703          51 KNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEAYTDAKH  106 (401)
Q Consensus        51 ~n~a~~y~klg~y~~Ai~~~~kAL~ldP~--~~kA~~~~a~a~~~lg~~eeA~~~~~k  106 (401)
                      ..+|.|..++|+.++|++.+...++..|.  +...+.++-.+++.++.|.++...+.+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34455555555555555555555554442  333455555555555555555544444

The molecular function of this protein is uncertain.

>KOG1586|consensus

Probab=95.35  E-value=2.2  Score=40.12  Aligned_cols=108  Identities=17%  Similarity=0.202  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-----
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLEIVPD-----   79 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~---~~~~~~~~n~a~~y~kl-g~y~~Ai~~~~kAL~ldP~-----   79 (401)
                      +-.-+-.+-..|+.++..+|+.++.++|++. .+.   ..-+..+..+|..|-.- .++++||.+|+.+-+.-..     
T Consensus        73 aat~YveA~~cykk~~~~eAv~cL~~aieIy-t~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s  151 (288)
T KOG1586|consen   73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIY-TDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS  151 (288)
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHH-HhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence            3333444455667789999999999999997 320   11234455678777754 8999999999999776432     


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Q psy4703          80 -DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (401)
Q Consensus        80 -~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~  117 (401)
                       --+.+...++.-..+|+|.+|+..|++.....-+|+-.
T Consensus       152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence             23567777888889999999999999988776666443

>KOG3617|consensus

Probab=95.19  E-value=6.2  Score=43.33  Aligned_cols=269  Identities=17%  Similarity=0.159  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH----------HhhcCCC-------CcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKA----------LKVTAEE-------SHERATCLKNRAAVYLKQNQNDKVIEDCSK   72 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~A----------l~l~~p~-------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~k   72 (401)
                      ..|++.+..+-.++|-+.|+++|+++          +.-+ |.       ...+..+|.--|.-.-..|+.+.|+..|..
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~-p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY-PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC-hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            45777888888889999999998764          2223 21       123456777777777788998888888886


Q ss_pred             HHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCccHHHHHHHHH
Q psy4703          73 SLEI---------------------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE------PTNKAIQPVLSRLF  125 (401)
Q Consensus        73 AL~l---------------------dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~------P~~~~~~~~L~~l~  125 (401)
                      |-..                     ...+--|-|.+|+-|...|++-+|+..|.+|-...      ..| .....|..+.
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nla 1016 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLA 1016 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence            6322                     34555667777777888888888777776654331      111 1222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHH---HHHHHhhccCchhHHh
Q psy4703         126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAK---QINTLLKCETNEEIYL  202 (401)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~---~L~~ll~~~~~~e~~l  202 (401)
                      ..-+....      -.+-.||+.....      ...+..-+...|....+.+.-|...-+.   .|..=++..+||.+..
T Consensus      1017 l~s~~~d~------v~aArYyEe~g~~------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1017 LMSGGSDL------VSAARYYEELGGY------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred             hhcCchhH------HHHHHHHHHcchh------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence            21111110      0112234433320      1122222333344445556555543333   3333333246777743


Q ss_pred             hHHHHHHH--HHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCC----C
Q psy4703         203 GEEDFITS--IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPAR----D  276 (401)
Q Consensus       203 A~e~fi~~--i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~----~  276 (401)
                      -..+|+..  ..+..|.+|-..=       ...-.++||+-.-.   .         -+.++++.+     .|.+    .
T Consensus      1085 RcadFF~~~~qyekAV~lL~~ar-------~~~~AlqlC~~~nv---~---------vtee~aE~m-----Tp~Kd~~~~ 1140 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLAR-------EFSGALQLCKNRNV---R---------VTEEFAELM-----TPTKDDMPN 1140 (1416)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHhcCCC---c---------hhHHHHHhc-----CcCcCCCcc
Confidence            33444422  3667777774411       12345578854321   1         123444432     2322    2


Q ss_pred             chhHHhHHhhhhhccCCH-----HHHHhhcCCHHHHHHHHHHHhcC
Q psy4703         277 PDIRRWAAEGLAYLTLDA-----EVKEALIEDKPALAALVDVASSV  317 (401)
Q Consensus       277 ~~~~~~~~eglay~~~~~-----~vke~~~~d~~~l~~l~~~~~~~  317 (401)
                      ...|++-.|-+|=+-++.     ..| .+-.-..-|++|-.++||.
T Consensus      1141 e~~R~~vLeqvae~c~qQG~Yh~AtK-KfTQAGdKl~AMraLLKSG 1185 (1416)
T KOG3617|consen 1141 EQERKQVLEQVAELCLQQGAYHAATK-KFTQAGDKLSAMRALLKSG 1185 (1416)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHH-HHhhhhhHHHHHHHHHhcC
Confidence            346777777776554431     122 2323344578888888887

>KOG2396|consensus

Probab=95.12  E-value=0.45  Score=48.94  Aligned_cols=101  Identities=14%  Similarity=0.068  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q psy4703          26 ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEAYTDA  104 (401)
Q Consensus        26 ~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~-~eeA~~~~  104 (401)
                      ..-...|+.|.... +.   +..+|.+...-..+.+.|.+--..|.++|..+|+++..|..-|.=.+.-+. .+.|...+
T Consensus        88 ~rIv~lyr~at~rf-~~---D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalf  163 (568)
T KOG2396|consen   88 NRIVFLYRRATNRF-NG---DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALF  163 (568)
T ss_pred             HHHHHHHHHHHHhc-CC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHH
Confidence            34556799999888 65   788888877666677779999999999999999999999988887777776 99999999


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703         105 KHIHRVEPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus       105 ~kal~l~P~~~~~~~~L~~l~~~~~~  130 (401)
                      .++++.+|+++.++...-++.-....
T Consensus       164 lrgLR~npdsp~Lw~eyfrmEL~~~~  189 (568)
T KOG2396|consen  164 LRGLRFNPDSPKLWKEYFRMELMYAE  189 (568)
T ss_pred             HHHhhcCCCChHHHHHHHHHHHHHHH
Confidence            99999999999988877665544333

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.10  E-value=0.035  Score=51.66  Aligned_cols=61  Identities=25%  Similarity=0.286  Sum_probs=56.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703          17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus        17 n~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ....+.|+++.|.+.|.+++.+. |+   ...-|+.+|....+.|+++.|...|++.+++||.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~la-p~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELA-PE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcC-ch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            34577899999999999999999 76   899999999999999999999999999999999763

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.01  E-value=4.3  Score=40.88  Aligned_cols=135  Identities=13%  Similarity=0.129  Sum_probs=100.7

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hhCCCCc
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPDDPKALFRRCQAYEA---IGKFEEAYTDAKHIH-RVEPTNK  115 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l----dP~~~kA~~~~a~a~~~---lg~~eeA~~~~~kal-~l~P~~~  115 (401)
                      -..+....++=.+|....+|+.-+...+..-.+    -++.+...+.+|.++..   .|+.++|+..+..++ .-.+.++
T Consensus       138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~  217 (374)
T PF13281_consen  138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP  217 (374)
T ss_pred             hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence            446667788888999999999999888876666    34567778889999998   999999999999954 5566788


Q ss_pred             cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhcchhhHH
Q psy4703         116 AIQPVLSRLFAIVTKRMQ-ENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEM  178 (401)
Q Consensus       116 ~~~~~L~~l~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~gae~  178 (401)
                      ++...++++++.+-.... .......++...|.+++...++.-.=.+++..|...|+.......
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~e  281 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEE  281 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHH
Confidence            899999999987744321 122234667789999999666666667777777777775444333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.95  E-value=0.58  Score=41.31  Aligned_cols=90  Identities=16%  Similarity=0.006  Sum_probs=63.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      ...-...+.+........++.+++...+...--+. |+   .+.+-..-|..++..|+|.+|+..++.+.+-.|..+-+-
T Consensus         6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-P~---~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k   81 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR-PE---FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK   81 (160)
T ss_pred             cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CC---chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence            34445566777777777777777777776655556 65   666777777777788888888888877777777777666


Q ss_pred             HHHHHHHHHcCCHH
Q psy4703          85 FRRCQAYEAIGKFE   98 (401)
Q Consensus        85 ~~~a~a~~~lg~~e   98 (401)
                      --++.|+..+|+.+
T Consensus        82 ALlA~CL~~~~D~~   95 (160)
T PF09613_consen   82 ALLALCLYALGDPS   95 (160)
T ss_pred             HHHHHHHHHcCChH
Confidence            66677777777654

>KOG1070|consensus

Probab=94.88  E-value=1.1  Score=51.28  Aligned_cols=138  Identities=12%  Similarity=0.055  Sum_probs=102.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ----NQNDKVIEDCSKSLEIV   77 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl----g~y~~Ai~~~~kAL~ld   77 (401)
                      +.-+|+++-.|...-.-+...++.+.|....++|+....+.   ...=..|+..+|+.+    |.-+.....|++|.+.+
T Consensus      1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R---EeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR---EEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC 1527 (1710)
T ss_pred             HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc---hhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc
Confidence            45689999999999999999999999999999999865343   222334444444444    34455667777887775


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        78 P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      . -...|..+..+|.+-+++++|.+.|+..++-.-+...+|..++...-...+...+..        .+.+++.
T Consensus      1528 d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~--------lL~rAL~ 1592 (1710)
T KOG1070|consen 1528 D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARE--------LLKRALK 1592 (1710)
T ss_pred             c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHH--------HHHHHHh
Confidence            3 357889999999999999999999999998887778888888777666555444433        4555555

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.74  E-value=0.68  Score=47.74  Aligned_cols=118  Identities=14%  Similarity=0.080  Sum_probs=84.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHhCC-----------
Q psy4703          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAV-----YLKQNQNDKVIEDCSKSLEIVP-----------   78 (401)
Q Consensus        15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~-----y~klg~y~~Ai~~~~kAL~ldP-----------   78 (401)
                      .-..+.+..+.+.-+..-.+|++++ |+   -+.+|.-+|.-     -....-|.+|++..+.++..+.           
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei~-pd---CAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEIN-PD---CADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhh-hh---hhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            3455678889999999999999999 76   77788777653     1122234555555555444321           


Q ss_pred             -----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccHHHHHHHHHHHHHHHHHHHH
Q psy4703          79 -----D--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        79 -----~--~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~--~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                           .  .+-+.+++|.|..++|+.+||++.++..++..|.  +..++++|-.++-.++.+.+.+.
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~  316 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA  316 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence                 0  1445678899999999999999999999998885  45688888887777777655544

The molecular function of this protein is uncertain.

>KOG1585|consensus

Probab=94.65  E-value=4.1  Score=38.61  Aligned_cols=117  Identities=15%  Similarity=0.095  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--Cc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE--SH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-----PDD   80 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~--~~-~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-----P~~   80 (401)
                      +..|...++.+-...+|+.|-.++.+|++-. ..  .+ .-+..|-..+.....+..+.++...|++|..+-     |+-
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            4455556666777889999999999998654 21  11 244567777777788999999999999998873     444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---ccHHHHHHHHHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPVLSRLFA  126 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~---~~~~~~L~~l~~  126 (401)
                      +-.-..++.=.....+.++|++.|++++.+--.+   ..+.+.++++..
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr  158 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR  158 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            4444555555667788999999999998774443   344444444433

>KOG1585|consensus

Probab=94.60  E-value=1.1  Score=42.31  Aligned_cols=139  Identities=13%  Similarity=0.102  Sum_probs=85.8

Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          41 EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        41 p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~------~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      |+-.-.+..|..-+.+|...++|++|-.+..+|.+-..++      +++|-.-|.....+..+.|+...|++|..+.-.+
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~  104 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC  104 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            5433466788888889999999999999999998654333      4556666666678889999999999998773322


Q ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCh----hHHHHHHHHHHHhhhcchhhHHHhhhhH
Q psy4703         115 ---KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD---TSAPM----DKRVTAVNNLVVLAREMSGAEMLLKSGV  184 (401)
Q Consensus       115 ---~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~----~~~~~a~~~L~~l~~~~~gae~~~~e~~  184 (401)
                         ..+...|++....+....      -..+.++|+++..   .....    +..-+..+-|+.+.++.+++..+.++++
T Consensus       105 GspdtAAmaleKAak~lenv~------Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~  178 (308)
T KOG1585|consen  105 GSPDTAAMALEKAAKALENVK------PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGV  178 (308)
T ss_pred             CCcchHHHHHHHHHHHhhcCC------HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhh
Confidence               234445555554443321      1335567777665   11111    1222333344455555555555555544


Q ss_pred             H
Q psy4703         185 A  185 (401)
Q Consensus       185 v  185 (401)
                      .
T Consensus       179 ~  179 (308)
T KOG1585|consen  179 A  179 (308)
T ss_pred             H
Confidence            3

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.55  E-value=0.51  Score=46.22  Aligned_cols=106  Identities=14%  Similarity=0.088  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cC-C----------------------------CCcchHHHHHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKV-TA-E----------------------------ESHERATCLKNRAAVY   57 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l-~~-p----------------------------~~~~~~~~~~n~a~~y   57 (401)
                      .+....+.+..+...|+..+|+......+.. .. +                            .....+.++..+|...
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            4567788899999999999999999888871 10 0                            0133456666677766


Q ss_pred             HHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q psy4703          58 LKQ------NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF-----------------EEAYTDAKHIHRVEPT  113 (401)
Q Consensus        58 ~kl------g~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~-----------------eeA~~~~~kal~l~P~  113 (401)
                      ...      +.+++++..|.++++++|.+.++|+..|..+..+=+.                 ..|+..|-+++.+.|.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            677      8889999999999999999999999999888765332                 2367777777777665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3364|consensus

Probab=94.53  E-value=0.42  Score=41.01  Aligned_cols=76  Identities=18%  Similarity=0.172  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           9 YNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~---y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      .+..++.++.+.+..+   -.+-|..++..+....|+  ..-...+.+|..|.++++|++++.+++..|+.+|+|.+|.-
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            4566778888887655   456888899888733143  35667777999999999999999999999999999988754


Q ss_pred             H
Q psy4703          86 R   86 (401)
Q Consensus        86 ~   86 (401)
                      -
T Consensus       110 L  110 (149)
T KOG3364|consen  110 L  110 (149)
T ss_pred             H
Confidence            3

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.51  E-value=0.8  Score=44.19  Aligned_cols=107  Identities=12%  Similarity=0.148  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H
Q psy4703           7 NDYNKLKESGNSAFK-QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---K   82 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~-~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~---k   82 (401)
                      ...+.|...|..-+. .++.+.|...|+.+++.. |.   +..+|......+...++.+.|...|++++..-|...   .
T Consensus        33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~---~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~  108 (280)
T PF05843_consen   33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PS---DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKK  108 (280)
T ss_dssp             S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHH
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHH
Confidence            356677777887666 677777999999999999 76   788888888889999999999999999999877655   4


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~  117 (401)
                      .|-.....=..-|+.+......+++.++.|.+..+
T Consensus       109 iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen  109 IWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence            66666777788899999999999999998885443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.25  E-value=0.52  Score=37.50  Aligned_cols=67  Identities=13%  Similarity=0.104  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q psy4703          28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD--PKALFRRCQAYEAIGKFE   98 (401)
Q Consensus        28 Ai~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~--~kA~~~~a~a~~~lg~~e   98 (401)
                      .+..++++++.+ |+   +..+.+.+|..++..|+|++|++.+-.++..++++  -.+.-.+=.++..+|.-+
T Consensus         7 ~~~al~~~~a~~-P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAAN-PD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHS-TT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            456688889999 76   88999999999999999999999999999999876  344444444444444433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.18  E-value=0.11  Score=33.91  Aligned_cols=29  Identities=31%  Similarity=0.438  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~l   76 (401)
                      .++.++|.+|..+|+|++|+..+.+++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45566666666666666666666666654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.92  E-value=1.5  Score=42.05  Aligned_cols=105  Identities=21%  Similarity=0.162  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCcchHHH---HHHHHHHHHHcC-------CHHHHHHHHHHH
Q psy4703           8 DYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATC---LKNRAAVYLKQN-------QNDKVIEDCSKS   73 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~----~g~y~eAi~~y~~Al~l~~p~~~~~~~~---~~n~a~~y~klg-------~y~~Ai~~~~kA   73 (401)
                      .+...+..|..+..    ..|+.+|..+|.+|.+..      +...   .++++.+|..-.       +...|+..|.++
T Consensus       108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a  181 (292)
T COG0790         108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA  181 (292)
T ss_pred             cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence            34566677777776    448888888888888887      3333   777777776531       233788888887


Q ss_pred             HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703          74 LEIVPDDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (401)
Q Consensus        74 L~ldP~~~kA~~~~a~a~~~----lg~~eeA~~~~~kal~l~P~~~~~~~~L~  122 (401)
                      -...  ++.+.+++|.+|..    ..++.+|+.+|+++.+...  ......++
T Consensus       182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            7765  77888888877754    3378888888888887765  44555555

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.90  E-value=0.28  Score=39.19  Aligned_cols=59  Identities=19%  Similarity=0.326  Sum_probs=35.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCCC--c---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703          18 SAFKQGDYETALDFYTKALKVTAEES--H---ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (401)
Q Consensus        18 ~~~~~g~y~eAi~~y~~Al~l~~p~~--~---~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l   76 (401)
                      ...+.|+|.+|++.+.+..+......  .   ....+..++|.++...|++++|+..+++++++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45677888888888777776652110  0   12344555666666666666666666666655

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.72  E-value=6.9  Score=37.62  Aligned_cols=104  Identities=16%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhc----C-----CC-CcchHHHHHHHHHHHHHcCCHHHH---HHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQG-DYETALDFYTKALKVT----A-----EE-SHERATCLKNRAAVYLKQNQNDKV---IEDCSKSL   74 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g-~y~eAi~~y~~Al~l~----~-----p~-~~~~~~~~~n~a~~y~klg~y~~A---i~~~~kAL   74 (401)
                      +..+++-|...+..+ +|++|+..+++|.++.    +     |+ ......++..++.+|+..+.++..   ....+.+-
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~  114 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE  114 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            556789999999999 9999999999999883    1     11 145678888999999998876543   33333344


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703          75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP  112 (401)
Q Consensus        75 ~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P  112 (401)
                      .-.|+.+..++-.=.++.+.++.+++.+.+.+.+.--+
T Consensus       115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            44588788776666677778999999999999887544

It is also involved in sporulation [].

>KOG1550|consensus

Probab=93.70  E-value=0.95  Score=48.10  Aligned_cols=106  Identities=21%  Similarity=0.224  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHH
Q psy4703          11 KLKESGNSAFKQG-----DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus        11 ~l~~~Gn~~~~~g-----~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg---~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      +....|..|.+..     ++..|+.+|.++..+.      ++.+.+++|.+|..-.   ++..|..+|..|...  .++.
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~  361 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHIL  361 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChH
Confidence            3456777777743     7889999999999999      6778899999998765   678999999988775  5899


Q ss_pred             HHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703          83 ALFRRCQAYEAI----GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (401)
Q Consensus        83 A~~~~a~a~~~l----g~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~  126 (401)
                      |.+++|.+|..=    -+.+.|..+|+++.+..  ++.+...++.++.
T Consensus       362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~  407 (552)
T KOG1550|consen  362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYE  407 (552)
T ss_pred             HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHH
Confidence            999999998643    47899999999999887  4444444444433

>KOG2471|consensus

Probab=93.68  E-value=0.1  Score=53.31  Aligned_cols=83  Identities=16%  Similarity=0.247  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh-hcC-------CC------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALK-VTA-------EE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~-l~~-------p~------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l   76 (401)
                      .+.+.|-++|+.|.|.-++.+|.+|++ .+.       |.      ......+.+|.|..|+..|+.-.|.++|.++...
T Consensus       285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v  364 (696)
T KOG2471|consen  285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV  364 (696)
T ss_pred             eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence            356889999999999999999999996 221       21      1336678999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy4703          77 VPDDPKALFRRCQAYEA   93 (401)
Q Consensus        77 dP~~~kA~~~~a~a~~~   93 (401)
                      .-.+|..|.|+|.|.+.
T Consensus       365 fh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  365 FHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HhcCcHHHHHHHHHHHH
Confidence            99999999999998864

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.62  E-value=1.3  Score=42.80  Aligned_cols=65  Identities=23%  Similarity=0.316  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      ...++..++..+...++++.++...++.+.++|-+-.+|.++=.+|+..|+...|+..|++.-..
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            77888899999999999999999999999999999999999999999999999999999887654

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=93.53  E-value=0.097  Score=42.48  Aligned_cols=114  Identities=20%  Similarity=0.285  Sum_probs=78.1

Q ss_pred             HHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCC-CchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhc
Q psy4703         212 IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFAD-GSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL  290 (401)
Q Consensus       212 ~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~-~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~  290 (401)
                      ..++++.|-++++..+..++..++..|+.+...  .+.....+.+ |..    +.+-.+|..  .++..+..|+--|..+
T Consensus         5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~i----~~l~~~l~~--~~~~v~~~a~~~L~~l   76 (120)
T cd00020           5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAG--NNDNIQAVVEAGGL----PALVQLLKS--EDEEVVKAALWALRNL   76 (120)
T ss_pred             HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCCh----HHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence            445788888888877788888888888877753  1222222222 222    333333432  3678999999999999


Q ss_pred             cCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcc
Q psy4703         291 TLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVD  335 (401)
Q Consensus       291 ~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~  335 (401)
                      +.+.........+..++..|++++.+. +..+.--++ .+|.||+
T Consensus        77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~-~~l~~l~  119 (120)
T cd00020          77 AAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNAT-GALSNLA  119 (120)
T ss_pred             ccCcHHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHH-HHHHHhh
Confidence            988755555545666899999999877 666666666 8888886

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=93.40  E-value=14  Score=40.37  Aligned_cols=154  Identities=20%  Similarity=0.175  Sum_probs=102.2

Q ss_pred             chhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHH----------HHHHH-hcHHHHHHHHcCCChhHHHHHHHhhhhc
Q psy4703         173 MSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFI----------TSIIK-QGVDILKRLYMSKNENIRVRALVGLCKL  241 (401)
Q Consensus       173 ~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi----------~~i~~-~gv~~Lk~l~~s~~d~i~~ralvgLckl  241 (401)
                      ..-..++.+.+.+..|..+++ ..+.++.+..-.|+          ..+.+ +.++.|.+++.+++..+.--++-.|+-+
T Consensus       280 ~~ve~kM~~~~iV~~Lv~~Ld-r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL  358 (708)
T PF05804_consen  280 PRVELKMVNKGIVSLLVKCLD-RENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNL  358 (708)
T ss_pred             hHHHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            333455556677888999988 67778766544444          33434 4489999999988876655455455555


Q ss_pred             cccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCc
Q psy4703         242 GSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKN  321 (401)
Q Consensus       242 ~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~  321 (401)
                      .....--.  +--..|-.-+|+..+    .    ++..+..++--|.=+|.+.+.|..++.- ..+..|++++-+.++..
T Consensus       359 Sfd~~~R~--~mV~~GlIPkLv~LL----~----d~~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~~~~~~  427 (708)
T PF05804_consen  359 SFDPELRS--QMVSLGLIPKLVELL----K----DPNFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLENSEEE  427 (708)
T ss_pred             CcCHHHHH--HHHHCCCcHHHHHHh----C----CCchHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHhCCCcc
Confidence            43211111  111224444555544    2    3456777888899999999999988655 47899999877765666


Q ss_pred             chhhhhhhHHhhcccCCc
Q psy4703         322 VWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       322 ~~~~~~~~~~~n~~~~~~  339 (401)
                      +.-.++ ..++||+...+
T Consensus       428 v~~eli-aL~iNLa~~~r  444 (708)
T PF05804_consen  428 VQLELI-ALLINLALNKR  444 (708)
T ss_pred             ccHHHH-HHHHHHhcCHH
Confidence            667778 89999997666

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=93.33  E-value=1.3  Score=53.27  Aligned_cols=202  Identities=17%  Similarity=0.200  Sum_probs=124.8

Q ss_pred             hhhHHHHHHHHhhccCchhH-HhhH---HHHH--------HHHHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCC
Q psy4703         181 KSGVAKQINTLLKCETNEEI-YLGE---EDFI--------TSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSD  248 (401)
Q Consensus       181 ~e~~v~~L~~ll~~~~~~e~-~lA~---e~fi--------~~i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d  248 (401)
                      ..+|+..|.++++ +.+++. ..|.   .+++        .-+..+|+..|-.++++++..++..+.+.|..+.. ++..
T Consensus       607 ~~ggL~~Lv~LL~-sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~-~~~~  684 (2102)
T PLN03200        607 ANDALRTLIQLLS-SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR-SIKE  684 (2102)
T ss_pred             ccccHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCH
Confidence            3578999999998 545544 3342   3333        23466889999999999999998888888877775 3333


Q ss_pred             CCCC-CCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhh
Q psy4703         249 ASIR-PFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQ  327 (401)
Q Consensus       249 ~~~~-~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~  327 (401)
                      .... --..|...-|.+    +|  ...+.+.+.+|+++|+.+.-++++++++... ..+..|++++++..+..--. .+
T Consensus       685 ~q~~~~v~~GaV~pL~~----LL--~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~-~~I~~Lv~lLr~G~~~~k~~-Aa  756 (2102)
T PLN03200        685 NRKVSYAAEDAIKPLIK----LA--KSSSIEVAEQAVCALANLLSDPEVAAEALAE-DIILPLTRVLREGTLEGKRN-AA  756 (2102)
T ss_pred             HHHHHHHHcCCHHHHHH----HH--hCCChHHHHHHHHHHHHHHcCchHHHHHHhc-CcHHHHHHHHHhCChHHHHH-HH
Confidence            2111 112233322222    22  3357789999999999999999999998854 55999999999983333333 44


Q ss_pred             hhHHhhcccCCcHHHHH-HHhhHhhhhhhhhccCCCccchHHHHHH--HHHHHhccccceehhccCCCCCCCCCC
Q psy4703         328 SDALKDVDKAFDEFMEE-VAKLEKEEAEMLETLYQDEKELADFYSL--LSTLVNGSSSVGMRKKRGLQPYNLPWS  399 (401)
Q Consensus       328 ~~~~~n~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (401)
                       .++.+|++.+|  +.+ |+.|+...+-..  +=-+-|...+.=..  ...|  -++..-.|.|+|-+.-.-||.
T Consensus       757 -~AL~~L~~~~~--~~~~~~~~~~~~g~v~--~l~~~L~~~~~~~~~~~~al--~~l~~l~~~~~~~~~~~~~~~  824 (2102)
T PLN03200        757 -RALAQLLKHFP--VDDVLKDSVQCRGTVL--ALVDLLNSTDLDSSATSEAL--EALALLARTKGGANFSHPPWA  824 (2102)
T ss_pred             -HHHHHHHhCCC--hhHHHHHHHHHhCcHH--HHHHHHhcCCcchhhHHHHH--HHHHHHHhhcccCCCCCCchh
Confidence             78999999988  222 556666654211  00011111111111  1111  123334567888888778885

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.25  E-value=0.21  Score=32.62  Aligned_cols=30  Identities=30%  Similarity=0.392  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      ..++.++|.+|..+|+|++|...+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357889999999999999999999999876

>KOG3617|consensus

Probab=93.15  E-value=16  Score=40.27  Aligned_cols=92  Identities=17%  Similarity=0.142  Sum_probs=70.2

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKS----------LEIVP----------DDPKALFRRCQAYEAIGKFEEAYTDA  104 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kA----------L~ldP----------~~~kA~~~~a~a~~~lg~~eeA~~~~  104 (401)
                      ..-..|++.|.-+...++.+.|+++|+++          |.-+|          .+...|...|+-+...|+.+.|+..|
T Consensus       856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y  935 (1416)
T KOG3617|consen  856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY  935 (1416)
T ss_pred             ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence            35567888998888899999999999864          33344          34566777899999999999999999


Q ss_pred             HHHHhh---------------------CCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703         105 KHIHRV---------------------EPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus       105 ~kal~l---------------------~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ..|-..                     ...|..+-..|++.++..++..++.+
T Consensus       936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~  988 (1416)
T KOG3617|consen  936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK  988 (1416)
T ss_pred             HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence            877443                     34566777778888888777766655

>KOG4814|consensus

Probab=93.14  E-value=0.91  Score=48.08  Aligned_cols=79  Identities=18%  Similarity=0.073  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (401)
Q Consensus        47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~  120 (401)
                      ..++.|-|.-+++..+|..+++.|...+..-|      .+++....++.||+++.+.|.|.+.++.|-+.+|.++-.+..
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            34667789999999999999999999998755      347788889999999999999999999999999998655554


Q ss_pred             HHHHH
Q psy4703         121 LSRLF  125 (401)
Q Consensus       121 L~~l~  125 (401)
                      .-.+.
T Consensus       434 ~~~~~  438 (872)
T KOG4814|consen  434 MLQSF  438 (872)
T ss_pred             HHHHH
Confidence            44333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.04  E-value=6.4  Score=36.02  Aligned_cols=86  Identities=13%  Similarity=0.117  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHH
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-D--PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRL  124 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~-~--~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~-~~~~~~~L~~l  124 (401)
                      .-..+|..+...+++++|+...+.++....+ +  .-+-.|+|.+...+|.+++|+..+.....  ++ ...+.+.-+.+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDi  168 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence            3455788899999999999999999965432 2  33568899999999999999988764321  11 23345566777


Q ss_pred             HHHHHHHHHHHH
Q psy4703         125 FAIVTKRMQENE  136 (401)
Q Consensus       125 ~~~~~~~~~a~~  136 (401)
                      +...+++..+..
T Consensus       169 ll~kg~k~~Ar~  180 (207)
T COG2976         169 LLAKGDKQEARA  180 (207)
T ss_pred             HHHcCchHHHHH
Confidence            777777766555

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.84  E-value=0.54  Score=37.47  Aligned_cols=58  Identities=14%  Similarity=0.212  Sum_probs=47.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703          55 AVYLKQNQNDKVIEDCSKSLEIVPD---------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP  112 (401)
Q Consensus        55 ~~y~klg~y~~Ai~~~~kAL~ldP~---------~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P  112 (401)
                      .-..+.++|..|++.+.+.+.....         ...++.++|.++...|++++|+..+++++++-.
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3456789999998888887766321         246789999999999999999999999998754

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.77  E-value=0.18  Score=33.48  Aligned_cols=29  Identities=14%  Similarity=0.027  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      ..|..+|.+-+..++|++|+.+|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45778888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.59  E-value=2  Score=45.23  Aligned_cols=106  Identities=17%  Similarity=0.075  Sum_probs=81.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHH------
Q psy4703          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK-SLEIVPDDPKALFRR------   87 (401)
Q Consensus        15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~k-AL~ldP~~~kA~~~~------   87 (401)
                      +.......++...++.....++..+ |+   +..++.|++.+....|....++..... +....|++..++..+      
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~-~~---~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  148 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVN-PE---NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQL  148 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcC-cc---cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHH
Confidence            4555566777777888888888888 65   888899998888887766665555554 888889888887777      


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      |+.+..+|+-.++....+++.++.|.++.+...+.-.
T Consensus       149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         149 GRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            8888888999999999999999999886665544433

>KOG1550|consensus

Probab=92.45  E-value=3.2  Score=44.17  Aligned_cols=136  Identities=13%  Similarity=0.141  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhh---cCCCCcchHHHHHHHHHHHHHc----C-CHHHHHHHHHHHH
Q psy4703           8 DYNKLKESGNSAFK-----QGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQ----N-QNDKVIEDCSKSL   74 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~-----~g~y~eAi~~y~~Al~l---~~p~~~~~~~~~~n~a~~y~kl----g-~y~~Ai~~~~kAL   74 (401)
                      ++.+....|..++.     .+|.+.|+.+|..+...   . -. ...+.+.+.+|.+|.+-    . ++..|+..+.++-
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-a~-~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA  320 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-AT-KGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA  320 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-Hh-hcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence            34455566666654     46899999999998771   1 00 01455778899999884    3 7888999999988


Q ss_pred             HhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          75 EIVPDDPKALFRRCQAYEAIG---KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        75 ~ldP~~~kA~~~~a~a~~~lg---~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ++.  ++.+.+.+|.+|..-.   ++..|..+|..|...  .+..+...++.++..-..    ...-..++..+|+++.+
T Consensus       321 ~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~g----v~r~~~~A~~~~k~aA~  392 (552)
T KOG1550|consen  321 ELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLG----VERNLELAFAYYKKAAE  392 (552)
T ss_pred             hcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCC----cCCCHHHHHHHHHHHHH
Confidence            875  6788999999998776   678999999988754  456677777777664311    11111345557777766


Q ss_pred             CC
Q psy4703         152 TS  153 (401)
Q Consensus       152 ~~  153 (401)
                      ..
T Consensus       393 ~g  394 (552)
T KOG1550|consen  393 KG  394 (552)
T ss_pred             cc
Confidence            43

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.41  E-value=2.2  Score=37.22  Aligned_cols=87  Identities=11%  Similarity=-0.044  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      .-...+.+........++.+++.......--+- |+   .+.+-..-|..++..|+|.+|+..++...+-.+..+-+---
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr-P~---~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL   83 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLR-PN---LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL   83 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC---ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence            334444555555555555555555554444444 44   44455555556666666666666666655555555544444


Q ss_pred             HHHHHHHcCCH
Q psy4703          87 RCQAYEAIGKF   97 (401)
Q Consensus        87 ~a~a~~~lg~~   97 (401)
                      ++.|+..+|+.
T Consensus        84 ~A~CL~al~Dp   94 (153)
T TIGR02561        84 LALCLNAKGDA   94 (153)
T ss_pred             HHHHHHhcCCh
Confidence            55555555553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.40  E-value=14  Score=37.47  Aligned_cols=96  Identities=19%  Similarity=0.142  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~   89 (401)
                      ..+...+....-.|+|+.|-..|+..+. + |+  ...--+..+-.....+|+++.|+.+.+.+-+.-|.-+.+..-.=.
T Consensus       121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-d-PE--tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe  196 (531)
T COG3898         121 LIHLLEAQAALLEGDYEDARKKFEAMLD-D-PE--TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE  196 (531)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHhc-C-hH--HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence            3445667788889999999999987665 3 32  122223333334457899999999999999999999999888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHh
Q psy4703          90 AYEAIGKFEEAYTDAKHIHR  109 (401)
Q Consensus        90 a~~~lg~~eeA~~~~~kal~  109 (401)
                      ..+..|+|+.|++..+...+
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHH
Confidence            88999999999988766543

>KOG0530|consensus

Probab=92.29  E-value=4.8  Score=38.51  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=89.9

Q ss_pred             HcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-
Q psy4703          21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE-   98 (401)
Q Consensus        21 ~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~e-   98 (401)
                      +...-..|+..-..+|.++ |.   +..+|..|-.|...++ +..+-+.+.+++++-+|.+...|..|-.+...+|++. 
T Consensus        55 ~~E~S~RAl~LT~d~i~lN-pA---nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~  130 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLN-PA---NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF  130 (318)
T ss_pred             ccccCHHHHHHHHHHHHhC-cc---cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence            3455677999999999999 76   8889988888888765 6888899999999999999999999999999999988 


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHH
Q psy4703          99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM  132 (401)
Q Consensus        99 eA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~  132 (401)
                      .-+...+.++..|..|--++..-.=+....+...
T Consensus       131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~  164 (318)
T KOG0530|consen  131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE  164 (318)
T ss_pred             chHHHHHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence            8888999999998888777776555555555443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.96  E-value=1.2  Score=44.72  Aligned_cols=77  Identities=18%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------------CCCCHHHHHHHHHHHHHc
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----------------------------VPDDPKALFRRCQAYEAI   94 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-----------------------------dP~~~kA~~~~a~a~~~l   94 (401)
                      |.+...+..++.++..+|++..|.+..++||=.                             |.....++++....+.+.
T Consensus        37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R  116 (360)
T PF04910_consen   37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR  116 (360)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence            568888888888888888888888888877511                             112256889999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC-CccHHHH
Q psy4703          95 GKFEEAYTDAKHIHRVEPT-NKAIQPV  120 (401)
Q Consensus        95 g~~eeA~~~~~kal~l~P~-~~~~~~~  120 (401)
                      |.+.-|.+.++-.+.+||. ||-....
T Consensus       117 G~~rTAlE~~KlLlsLdp~~DP~g~ll  143 (360)
T PF04910_consen  117 GCWRTALEWCKLLLSLDPDEDPLGVLL  143 (360)
T ss_pred             CcHHHHHHHHHHHHhcCCCCCcchhHH
Confidence            9999999999999999998 6644333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.86  E-value=7  Score=34.57  Aligned_cols=86  Identities=12%  Similarity=0.043  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      -...+.....+-+..++.+++...+...--+.|..+..-..-|..+...|+|.+|+..++.+.+-.|..+-+...+.-+.
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            34556677777888899999999999999999999999999999999999999999999999999999998999888888


Q ss_pred             HHHHHH
Q psy4703         126 AIVTKR  131 (401)
Q Consensus       126 ~~~~~~  131 (401)
                      ..+++.
T Consensus        89 ~~~~D~   94 (160)
T PF09613_consen   89 YALGDP   94 (160)
T ss_pred             HHcCCh
Confidence            776653

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.84  E-value=1.1  Score=42.82  Aligned_cols=75  Identities=25%  Similarity=0.350  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703          12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (401)
Q Consensus        12 l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a   90 (401)
                      +.+.=+.+...++|+.|..+-.+.+.++ |.   ++.-+.-+|.+|.++|.+..|+++++..++..|+++.+-.-+++.
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~-P~---dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLN-PE---DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhC-CC---ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            3445566888999999999999999999 76   777788899999999999999999999999999998887666544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.66  E-value=8.2  Score=39.00  Aligned_cols=105  Identities=17%  Similarity=0.219  Sum_probs=76.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcC--CC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703          15 SGNSAFKQGDYETALDFYTKALKVTA--EE--SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (401)
Q Consensus        15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~--~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a   90 (401)
                      .-...+..|+|+.|++..+...+..-  ++  ....+.++...+...+. -+...|..+..+++++.|+.+.+-.--+.+
T Consensus       194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAra  272 (531)
T COG3898         194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARA  272 (531)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence            33456778999999999876544321  22  12344555555554443 358889999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          91 YEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        91 ~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      ++..|+..++-..++.+-+.+|. +.+...+
T Consensus       273 lf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY  302 (531)
T COG3898         273 LFRDGNLRKGSKILETAWKAEPH-PDIALLY  302 (531)
T ss_pred             HHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence            99999999999999999999885 4444433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.23  E-value=2.9  Score=38.76  Aligned_cols=82  Identities=16%  Similarity=0.064  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhcC-CC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy4703           8 DYNKLKESGNSAFKQGD-------YETALDFYTKALKVTA-EE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP   78 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~-------y~eAi~~y~~Al~l~~-p~-~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP   78 (401)
                      .+..+...++.+-..|+       +..|+..|.++++... |. .-....+.+.+|..+.++|++++|+.++.+++....
T Consensus       117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            35556667777777777       4556666777766552 21 223567888899999999999999999999998754


Q ss_pred             CCH-HHHHHHHH
Q psy4703          79 DDP-KALFRRCQ   89 (401)
Q Consensus        79 ~~~-kA~~~~a~   89 (401)
                      ... ..+..+|+
T Consensus       197 ~s~~~~l~~~AR  208 (214)
T PF09986_consen  197 ASKEPKLKDMAR  208 (214)
T ss_pred             CCCcHHHHHHHH
Confidence            333 35555554

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.13  E-value=5  Score=42.28  Aligned_cols=111  Identities=13%  Similarity=0.096  Sum_probs=84.8

Q ss_pred             HcCCHHH-HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy4703          21 KQGDYET-ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE   99 (401)
Q Consensus        21 ~~g~y~e-Ai~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~ee   99 (401)
                      ..+.... ++..|...+.++ |.++......+ +...+..+++...+......++..+|.+..++.++|.+....|....
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~-~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~  119 (620)
T COG3914          42 NAEGLQALAIYALLLGIAIN-DVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFL  119 (620)
T ss_pred             cccCchhHHHHHHHccCccC-CCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHH
Confidence            3444444 777777777877 65444444444 78888899999999999999999999999999999999999888887


Q ss_pred             HHHHHHH-HHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703         100 AYTDAKH-IHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus       100 A~~~~~k-al~l~P~~~~~~~~L~~l~~~~~~~~~a  134 (401)
                      +...+.. +....|+|.++...+-+.++ +++..+.
T Consensus       120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~  154 (620)
T COG3914         120 ALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKL  154 (620)
T ss_pred             HHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHH
Confidence            7777666 88999999888887755554 4444433

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.09  E-value=3.2  Score=42.83  Aligned_cols=102  Identities=16%  Similarity=0.221  Sum_probs=79.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy4703          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG   95 (401)
Q Consensus        16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg   95 (401)
                      -......|+.-.|-.-...+++.. |.   .+.....++..+..+|+|+.+.++.+-+=.+-..-.++...+-..+.++|
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~-~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~  371 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQ-QQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA  371 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhC-CC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh
Confidence            344567899999999999999988 66   56666678889999999999999888776655555677777778889999


Q ss_pred             CHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          96 KFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        96 ~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      ++++|+......+.-+-.++++...-
T Consensus       372 r~~~a~s~a~~~l~~eie~~ei~~ia  397 (831)
T PRK15180        372 RWREALSTAEMMLSNEIEDEEVLTVA  397 (831)
T ss_pred             hHHHHHHHHHHHhccccCChhheeee
Confidence            99999999888876655666554433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.03  E-value=7  Score=39.27  Aligned_cols=108  Identities=18%  Similarity=0.141  Sum_probs=81.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-------------------------CCCcchHHHHHHHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------------------------EESHERATCLKNRAAV   56 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-------------------------p~~~~~~~~~~n~a~~   56 (401)
                      |+.+|=++..+...+..+..+|+++.|.++.++|+=...                         +.+.....+.+.....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            467888999999999999999999999999988863210                         1123344455556777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q psy4703          57 YLKQNQNDKVIEDCSKSLEIVPD-DPKALFRRCQAY-EAIGKFEEAYTDAKHIHR  109 (401)
Q Consensus        57 y~klg~y~~Ai~~~~kAL~ldP~-~~kA~~~~a~a~-~~lg~~eeA~~~~~kal~  109 (401)
                      ..+.|-|.-|++.|.-.+.+||. |+-+....-..| .+.++|+-=+..++....
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            88899999999999999999998 776544444444 677888777766665444

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PRK09687 putative lyase; Provisional

Probab=91.02  E-value=3  Score=40.36  Aligned_cols=31  Identities=23%  Similarity=0.247  Sum_probs=19.1

Q ss_pred             CCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhc
Q psy4703         302 EDKPALAALVDVASSVKYKNVWNGTQSDALKDV  334 (401)
Q Consensus       302 ~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~  334 (401)
                      .|+..+..|+.++++. +..|-+..+ ..+-++
T Consensus       156 ~~~~ai~~L~~~L~d~-~~~VR~~A~-~aLg~~  186 (280)
T PRK09687        156 NDEAAIPLLINLLKDP-NGDVRNWAA-FALNSN  186 (280)
T ss_pred             CCHHHHHHHHHHhcCC-CHHHHHHHH-HHHhcC
Confidence            3566666666666655 555666666 565555

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=90.71  E-value=3.6  Score=34.08  Aligned_cols=71  Identities=11%  Similarity=0.055  Sum_probs=55.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCccHH
Q psy4703          53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KALFRRCQAYEAIGK-----------FEEAYTDAKHIHRVEPTNKAIQ  118 (401)
Q Consensus        53 ~a~~y~klg~y~~Ai~~~~kAL~ldP~~~---kA~~~~a~a~~~lg~-----------~eeA~~~~~kal~l~P~~~~~~  118 (401)
                      +|.-++..|++-+|++..+..+...+++.   -.+..-|.++.++..           +-.|+++|.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57788999999999999999999988776   456666888876654           4568999999999999874444


Q ss_pred             HHHHH
Q psy4703         119 PVLSR  123 (401)
Q Consensus       119 ~~L~~  123 (401)
                      ..+++
T Consensus        82 ~~la~   86 (111)
T PF04781_consen   82 FELAS   86 (111)
T ss_pred             HHHHH
Confidence            44443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.65  E-value=13  Score=35.77  Aligned_cols=100  Identities=18%  Similarity=0.200  Sum_probs=73.0

Q ss_pred             HHHcCCHHHHHHHHHHHHhhc---CCC-CcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---CC------
Q psy4703          19 AFKQGDYETALDFYTKALKVT---AEE-SHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEI----VP---DD------   80 (401)
Q Consensus        19 ~~~~g~y~eAi~~y~~Al~l~---~p~-~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~l----dP---~~------   80 (401)
                      ..+.|+++.|..+|.++-.+.   .|+ ....+..++|.|...++.+ +|+.|+.+.++|+++    .+   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999987654   132 2346788999999999999 999999999999888    22   11      


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHH---HHHHHHhhCCCCccHH
Q psy4703          81 -PKALFRRCQAYEAIGKFEEAYT---DAKHIHRVEPTNKAIQ  118 (401)
Q Consensus        81 -~kA~~~~a~a~~~lg~~eeA~~---~~~kal~l~P~~~~~~  118 (401)
                       ...+..++.+|...+.++...+   ..+.+-.-.|+.+.+.
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence             4467788999999888765444   3333334456655555

It is also involved in sporulation [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.63  E-value=5.2  Score=41.02  Aligned_cols=52  Identities=19%  Similarity=0.152  Sum_probs=46.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703          54 AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKH  106 (401)
Q Consensus        54 a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~k  106 (401)
                      |.-++..|+|.++.-++.-..+++| .+.+|.-+|.+++...+|++|-.++..
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            3446688999999999999999999 999999999999999999999998865

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1310|consensus

Probab=90.55  E-value=1.4  Score=45.80  Aligned_cols=90  Identities=19%  Similarity=0.151  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG---KFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (401)
Q Consensus        47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg---~~eeA~~~~~kal~l~P~~~~~~~~L~~  123 (401)
                      ..-+..-|.-.+-......|+.+|.+++..-|.....|.+++.++++.+   +--.|+.++..|++++|....++..|.+
T Consensus       374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~  453 (758)
T KOG1310|consen  374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR  453 (758)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence            3334444444445566788999999999999999999999999998865   4556899999999999999999999988


Q ss_pred             HHHHHHHHHHHHH
Q psy4703         124 LFAIVTKRMQENE  136 (401)
Q Consensus       124 l~~~~~~~~~a~~  136 (401)
                      +...++....+..
T Consensus       454 aL~el~r~~eal~  466 (758)
T KOG1310|consen  454 ALNELTRYLEALS  466 (758)
T ss_pred             HHHHHhhHHHhhh
Confidence            8888877755544

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=89.87  E-value=0.52  Score=47.15  Aligned_cols=61  Identities=15%  Similarity=0.094  Sum_probs=50.9

Q ss_pred             HHHHHHhhc-CCCChhHHHHHHHHHHHhhhcc-----hhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHH
Q psy4703         143 HNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM-----SGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFI  208 (401)
Q Consensus       143 ~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~-----~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi  208 (401)
                      .+||+++.. .+++.+++++|++.|+.+.|+|     ++|+..|++  ++..+++|+   ||+.+-+||-|=
T Consensus         4 ~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKE--I~eAYEVLs---D~eKRa~YD~fG   70 (371)
T COG0484           4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKE--INEAYEVLS---DPEKRAAYDQFG   70 (371)
T ss_pred             cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH--HHHHHHHhC---CHHHHHHhhccC
Confidence            457999988 7899999999999999999984     578888888  888898888   888866665443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=89.84  E-value=6.5  Score=47.72  Aligned_cols=178  Identities=17%  Similarity=0.145  Sum_probs=101.2

Q ss_pred             hhHHHHHHHHHHHhhhcchhhHHHhh--hhHHHHHHHHhhccCchhHHhh-H---------HHHHHHH-HHhcHHHHHHH
Q psy4703         156 MDKRVTAVNNLVVLAREMSGAEMLLK--SGVAKQINTLLKCETNEEIYLG-E---------EDFITSI-IKQGVDILKRL  222 (401)
Q Consensus       156 ~~~~~~a~~~L~~l~~~~~gae~~~~--e~~v~~L~~ll~~~~~~e~~lA-~---------e~fi~~i-~~~gv~~Lk~l  222 (401)
                      .+.+..+...+..+.+..........  .+++..|..++. +.++.+... .         ++.-..| ...+++.|-.+
T Consensus        29 ~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~L  107 (2102)
T PLN03200         29 PQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSL  107 (2102)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHH
Confidence            34445555555555554444333322  345666666665 444444221 1         2222233 45669999999


Q ss_pred             HcCCChhHHHHHHHhhhhccccCCCCC-CCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhh
Q psy4703         223 YMSKNENIRVRALVGLCKLGSMGGSDA-SIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEAL  300 (401)
Q Consensus       223 ~~s~~d~i~~ralvgLckl~~~gg~d~-~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~  300 (401)
                      +++++.+.+..|...|+.+...+..|. ..+.+ .+|..--|++.++.   .+..|.-.++.|+=-|.-++...+-+-..
T Consensus       108 L~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~---gsk~d~~L~~~Av~AL~nLs~~~en~~~~  184 (2102)
T PLN03200        108 LKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQP---GNKQDKVVEGLLTGALRNLCGSTDGFWSA  184 (2102)
T ss_pred             HHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhC---CchhhHHHHHHHHHHHHHHhcCccchHHH
Confidence            999999999999999999887543232 22222 47877778887664   12334334555666666677666655333


Q ss_pred             cCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         301 IEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       301 ~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      +-+...+..|++++++. +....+-.+ .++.|+..+.+
T Consensus       185 IIeaGaVp~LV~LLsS~-d~~lQ~eAa-~aLa~Lass~e  221 (2102)
T PLN03200        185 TLEAGGVDILVKLLSSG-NSDAQANAA-SLLARLMMAFE  221 (2102)
T ss_pred             HHHcCCHHHHHHHHcCC-CHHHHHHHH-HHHHHHHcCCh
Confidence            33445666777776655 445555555 55555544433

>KOG1839|consensus

Probab=89.65  E-value=9.5  Score=43.76  Aligned_cols=148  Identities=12%  Similarity=0.100  Sum_probs=109.3

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-   77 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-   77 (401)
                      ..+|..+..|...+..+.+.|++++|+..-.+|.-+..    -+++.....|.|++...+..+....|+..+.+++.+. 
T Consensus       967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen  967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL 1046 (1236)
T ss_pred             hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc
Confidence            46788899999999999999999999999766655442    1235588899999999999999999999999998763 


Q ss_pred             -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          78 -------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--------NKAIQPVLSRLFAIVTKRMQENEQLQNKV  142 (401)
Q Consensus        78 -------P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~--------~~~~~~~L~~l~~~~~~~~~a~~~~~~~~  142 (401)
                             |.-.-...+++..+..+++++-|+++.+.|+.++-.        +......++++...+++...+... .+..
T Consensus      1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~-ek~t 1125 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH-EKVT 1125 (1236)
T ss_pred             cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH-HhhH
Confidence                   444445678899999999999999999999986432        123455566666666666554331 1233


Q ss_pred             HHHHHHhhc
Q psy4703         143 HNMFKYVFD  151 (401)
Q Consensus       143 ~~~~~~~~~  151 (401)
                      ...|...+.
T Consensus      1126 ~~iy~~qlg 1134 (1236)
T KOG1839|consen 1126 YGIYKEQLG 1134 (1236)
T ss_pred             HHHHHHhhC
Confidence            445555554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.65  E-value=0.58  Score=31.01  Aligned_cols=30  Identities=27%  Similarity=0.358  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIV   77 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld   77 (401)
                      .+|..+|.+-+..++|++|+.+|.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467788888899999999999999998864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.49  E-value=1.1  Score=42.33  Aligned_cols=62  Identities=13%  Similarity=0.044  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        66 Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      |..+|.+|+.+.|.+...|..+|.++...|+.-+|+.+|-+++-..--.+.+..+|..+...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555555555555554333334445555444443

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG4224|consensus

Probab=89.40  E-value=5  Score=40.06  Aligned_cols=175  Identities=18%  Similarity=0.212  Sum_probs=108.8

Q ss_pred             CCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHH---------HHHH-Hhc---HHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFI---------TSII-KQG---VDIL  219 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi---------~~i~-~~g---v~~L  219 (401)
                      ..+...+..+...|+-+.+-.+.-..+...|++.-+..+++ ++|+++..=....|         +.+. +.+   ++-|
T Consensus       178 skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~-s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~L  256 (550)
T KOG4224|consen  178 SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK-SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPAL  256 (550)
T ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc-cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHH
Confidence            33444455566666666666666666667788888888888 67777621111111         3332 223   6778


Q ss_pred             HHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHh
Q psy4703         220 KRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEA  299 (401)
Q Consensus       220 k~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~  299 (401)
                      -++|.++++.++..|-.+|--+.+.  +..-......|+--.|.+..+     +..-+++.- +|=-.--+|+- .--|-
T Consensus       257 v~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llq-----s~~~plila-sVaCIrnisih-plNe~  327 (550)
T KOG4224|consen  257 VDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQ-----SPMGPLILA-SVACIRNISIH-PLNEV  327 (550)
T ss_pred             HHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHh-----CcchhHHHH-HHHHHhhcccc-cCccc
Confidence            8888899999998888777766642  333333344466655655542     222222211 11111112332 23567


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCc-chhhhhhhHHhhcccCCc
Q psy4703         300 LIEDKPALAALVDVASSVKYKN-VWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       300 ~~~d~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~n~~~~~~  339 (401)
                      ++-|.-||+-||.+++-. |.. +.-... +++-||.-++.
T Consensus       328 lI~dagfl~pLVrlL~~~-dnEeiqchAv-stLrnLAasse  366 (550)
T KOG4224|consen  328 LIADAGFLRPLVRLLRAG-DNEEIQCHAV-STLRNLAASSE  366 (550)
T ss_pred             ceecccchhHHHHHHhcC-CchhhhhhHH-HHHHHHhhhhh
Confidence            899999999999999887 655 666677 99999999887

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=89.23  E-value=4  Score=41.09  Aligned_cols=98  Identities=12%  Similarity=0.039  Sum_probs=71.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHhCCCCHHHHHHHH
Q psy4703          15 SGNSAFKQGDYETALDFYTKALKVTAEE--SHERATCLKNRAAVYLK---QNQNDKVIEDCSKS-LEIVPDDPKALFRRC   88 (401)
Q Consensus        15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~--~~~~~~~~~n~a~~y~k---lg~y~~Ai~~~~kA-L~ldP~~~kA~~~~a   88 (401)
                      .--.|-...+|+.=+...+..-.+  |+  -.....+.+..|.++-+   .|+.++|+..+..+ ....+.++..+.-.|
T Consensus       147 lllSyRdiqdydamI~Lve~l~~~--p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G  224 (374)
T PF13281_consen  147 LLLSYRDIQDYDAMIKLVETLEAL--PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG  224 (374)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhcc--CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            333455666777666666554333  21  12356667778888888   99999999999994 455678899999999


Q ss_pred             HHHHH---------cCCHHHHHHHHHHHHhhCCCC
Q psy4703          89 QAYEA---------IGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        89 ~a~~~---------lg~~eeA~~~~~kal~l~P~~  114 (401)
                      .+|-.         ...+++|+..|.++++++|+.
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            99853         235789999999999999753

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=89.20  E-value=1.5  Score=33.61  Aligned_cols=72  Identities=28%  Similarity=0.349  Sum_probs=51.3

Q ss_pred             HHHHHHH-cCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHH
Q psy4703         217 DILKRLY-MSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAE  295 (401)
Q Consensus       217 ~~Lk~l~-~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~  295 (401)
                      +.|-+.+ +++++.++..++..|+.++..                +.......++  ...++..|+.|+..|+.+     
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~----------------~~~~~L~~~l--~d~~~~vr~~a~~aL~~i-----   58 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGELGDP----------------EAIPALIELL--KDEDPMVRRAAARALGRI-----   58 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCCTHH----------------HHHHHHHHHH--TSSSHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------------hHHHHHHHHH--cCCCHHHHHHHHHHHHHh-----
Confidence            3444555 688889999888888855431                3455555555  346788999999999988     


Q ss_pred             HHHhhcCCHHHHHHHHHHHhcC
Q psy4703         296 VKEALIEDKPALAALVDVASSV  317 (401)
Q Consensus       296 vke~~~~d~~~l~~l~~~~~~~  317 (401)
                            .++..+..|.+++.+.
T Consensus        59 ------~~~~~~~~L~~~l~~~   74 (88)
T PF13646_consen   59 ------GDPEAIPALIKLLQDD   74 (88)
T ss_dssp             ------HHHHTHHHHHHHHTC-
T ss_pred             ------CCHHHHHHHHHHHcCC
Confidence                  2677888888888776

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=89.18  E-value=10  Score=37.35  Aligned_cols=79  Identities=18%  Similarity=0.087  Sum_probs=37.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQ------------GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED   69 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~------------g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~   69 (401)
                      +..+|.+.+.|......--..            .-.+.-+..|++|++.+ |+   +..++..+-.++.+..+-++...-
T Consensus        12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~---~~~L~l~~l~~~~~~~~~~~l~~~   87 (321)
T PF08424_consen   12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PD---SERLLLGYLEEGEKVWDSEKLAKK   87 (321)
T ss_pred             HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhCCHHHHHHH
Confidence            345677777666554322111            11233344455555555 43   344444444444444555555555


Q ss_pred             HHHHHHhCCCCHHHH
Q psy4703          70 CSKSLEIVPDDPKAL   84 (401)
Q Consensus        70 ~~kAL~ldP~~~kA~   84 (401)
                      .++++..+|+++..|
T Consensus        88 we~~l~~~~~~~~LW  102 (321)
T PF08424_consen   88 WEELLFKNPGSPELW  102 (321)
T ss_pred             HHHHHHHCCCChHHH
Confidence            555555555554444

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=89.12  E-value=0.89  Score=44.33  Aligned_cols=83  Identities=12%  Similarity=0.012  Sum_probs=71.7

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR-RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~-~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~  123 (401)
                      .++.+|...+.-..+.|-|.+--..|.+++..+|.++..|.. -+-=+..-++++.+...|.++++++|.+|.++...-+
T Consensus       105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr  184 (435)
T COG5191         105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR  184 (435)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence            377888888887788889999999999999999999999877 4555788899999999999999999999999988766


Q ss_pred             HHHH
Q psy4703         124 LFAI  127 (401)
Q Consensus       124 l~~~  127 (401)
                      +.-.
T Consensus       185 ~El~  188 (435)
T COG5191         185 MELM  188 (435)
T ss_pred             HHHH
Confidence            5443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.98  E-value=1.7  Score=42.03  Aligned_cols=67  Identities=16%  Similarity=0.122  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY  148 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~  148 (401)
                      +.+...+..|...|.+.+|++..++++.++|-+.+....|.+++..+++...+.+.+++-+...+..
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleae  346 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAE  346 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH
Confidence            3444455566666666666666666666666666666666666666666555555444444443333

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.79  E-value=1.5  Score=41.47  Aligned_cols=62  Identities=18%  Similarity=0.149  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy4703          28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA   93 (401)
Q Consensus        28 Ai~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~   93 (401)
                      |..+|.+|+.+. |+   ....|..+|..+...|++=.|+-+|-+++-..-.++.|.-++...+.+
T Consensus         1 A~~~Y~~A~~l~-P~---~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLL-PS---NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH--TT---BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhC-CC---CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            789999999999 77   899999999999999999999999999998876678899999888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1914|consensus

Probab=88.69  E-value=25  Score=37.06  Aligned_cols=158  Identities=14%  Similarity=0.058  Sum_probs=104.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      |+.||.+..+|...-..+-.+ .++++-..|++.+... |.   .+.+|......-+..++|+.....|.++|.--= +.
T Consensus        13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~---s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nl   86 (656)
T KOG1914|consen   13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PS---SPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NL   86 (656)
T ss_pred             HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CC---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hH
Confidence            678999999999888877766 9999999999999999 76   788888888888899999999999998875321 12


Q ss_pred             HHH-HHHHHHHHHcCCHHHHHH----HHHHHH---hhCCCCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcC
Q psy4703          82 KAL-FRRCQAYEAIGKFEEAYT----DAKHIH---RVEPTNKAIQPVLSRLFAIVTKRMQE-NEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus        82 kA~-~~~a~a~~~lg~~eeA~~----~~~kal---~l~P~~~~~~~~L~~l~~~~~~~~~a-~~~~~~~~~~~~~~~~~~  152 (401)
                      ..| ..+.-+....++...+..    .|+-++   -+++..-.++.......+......+- +++--..+...|++++..
T Consensus        87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t  166 (656)
T KOG1914|consen   87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT  166 (656)
T ss_pred             hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence            222 112333344444433222    222222   35777777888776666554433332 112225678889999886


Q ss_pred             C-CChhHHHHHHHH
Q psy4703         153 S-APMDKRVTAVNN  165 (401)
Q Consensus       153 ~-~~~~~~~~a~~~  165 (401)
                      | .+.+...+.+.+
T Consensus       167 Pm~nlEkLW~DY~~  180 (656)
T KOG1914|consen  167 PMHNLEKLWKDYEA  180 (656)
T ss_pred             ccccHHHHHHHHHH
Confidence            5 344554544443

>KOG0530|consensus

Probab=88.53  E-value=4.3  Score=38.84  Aligned_cols=114  Identities=11%  Similarity=0.075  Sum_probs=92.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND-KVIEDCSKSLEIVPD   79 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g-~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~-~Ai~~~~kAL~ldP~   79 (401)
                      |..+|.+-..|.-+-+.+-..+ +..+-+++.++.++-. |.   +..+|..|-.+.-.+|++. .-++.+..+|..|..
T Consensus        70 i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pK---NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaK  145 (318)
T KOG0530|consen   70 IRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PK---NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAK  145 (318)
T ss_pred             HHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-cc---chhHHHHHHHHHHHhcCcccchHHHHHHHHhcccc
Confidence            4456665555554444443332 4566788888888888 66   9999999999999999988 889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP  119 (401)
Q Consensus        80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~  119 (401)
                      +..||-.|--+....+.|+.-+.+....++.|-.|-.++.
T Consensus       146 NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN  185 (318)
T KOG0530|consen  146 NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN  185 (318)
T ss_pred             chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence            9999999999999999999999999999998876655544

>KOG2300|consensus

Probab=88.44  E-value=12  Score=38.70  Aligned_cols=99  Identities=22%  Similarity=0.180  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC------
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-IVPDD------   80 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~-ldP~~------   80 (401)
                      .+....-.|.....-|.|+.|...|..|+++. ......+-+-.|+|..|+..++-+    ++.++++ +.|.+      
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~i~p~nt~s~ss  440 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYLRIGDAE----DLYKALDLIGPLNTNSLSS  440 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHHHhccHH----HHHHHHHhcCCCCCCcchH
Confidence            35556677888888899999999999999998 554567778889999999977633    3444444 34542      


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4703          81 ----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE  111 (401)
Q Consensus        81 ----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~  111 (401)
                          ..++|-.|-..+..+++.||...+.+.+++.
T Consensus       441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence                4568888988999999999999999999876

>KOG2047|consensus

Probab=88.35  E-value=18  Score=38.84  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=45.2

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~--~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      ..||++.+.|..+-.  +..|+..+-+..|++|++.-.|..  .....+|...|..|-..|+.+.|...++++++.+=..
T Consensus       343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~  420 (835)
T KOG2047|consen  343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT  420 (835)
T ss_pred             hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence            344555555544333  234455555555555544222311  1233444444444444444444444444444443211


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703          81 ----PKALFRRCQAYEAIGKFEEAYTDAKHIH  108 (401)
Q Consensus        81 ----~kA~~~~a~a~~~lg~~eeA~~~~~kal  108 (401)
                          +..|...|..-+.-.+++.|+...++|.
T Consensus       421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~  452 (835)
T KOG2047|consen  421 VEDLAEVWCAWAEMELRHENFEAALKLMRRAT  452 (835)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence                2334444444444444444444444444

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.32  E-value=2.5  Score=40.97  Aligned_cols=62  Identities=15%  Similarity=0.140  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~ka  107 (401)
                      ...++...|..|...|.+.+|++.+.+++.+||-+...+..+-+++..+|+--.|+..|++.
T Consensus       278 y~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         278 YMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            44556667889999999999999999999999999999999999999999999999998875

>KOG1077|consensus

Probab=88.28  E-value=9.5  Score=41.18  Aligned_cols=116  Identities=28%  Similarity=0.412  Sum_probs=72.1

Q ss_pred             HHHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHH-----
Q psy4703         210 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAA-----  284 (401)
Q Consensus       210 ~i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~-----  284 (401)
                      ....+++..|.+++.....+||-.|+-.+|++.+++   +     ...++.+=-+..=.-| +...|...||-|+     
T Consensus       325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~---~-----s~davK~h~d~Ii~sL-kterDvSirrravDLLY~  395 (938)
T KOG1077|consen  325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSE---F-----SIDAVKKHQDTIINSL-KTERDVSIRRRAVDLLYA  395 (938)
T ss_pred             HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc---c-----hHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHH
Confidence            346678888888888888888888888888888752   1     1122211111111111 2345666666554     


Q ss_pred             ------------hhhhhc-cCCHHHHHhhcCCHHHHH---------------HHHHHHhcCCCCcchhhhhhhHHhhcc
Q psy4703         285 ------------EGLAYL-TLDAEVKEALIEDKPALA---------------ALVDVASSVKYKNVWNGTQSDALKDVD  335 (401)
Q Consensus       285 ------------eglay~-~~~~~vke~~~~d~~~l~---------------~l~~~~~~~~~~~~~~~~~~~~~~n~~  335 (401)
                                  |-|.|+ |.|+.++|+++---+-|.               .|++++..-.+-.+||-++ -|+||=-
T Consensus       396 mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~Rvv-QiVvNne  473 (938)
T KOG1077|consen  396 MCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVV-QIVVNNE  473 (938)
T ss_pred             HhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhh-eeEecch
Confidence                        567887 489999999865443332               3455554444556999999 8888854

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.18  E-value=28  Score=34.24  Aligned_cols=91  Identities=8%  Similarity=0.031  Sum_probs=72.9

Q ss_pred             HHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy4703          30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQ------------NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF   97 (401)
Q Consensus        30 ~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~------------y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~   97 (401)
                      .-|++.++-+ |+   +..+|..+..-.-.+-.            .+.-+..+++||+.+|++...+..+=.+..+..+-
T Consensus         6 ~el~~~v~~~-P~---di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~   81 (321)
T PF08424_consen    6 AELNRRVREN-PH---DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS   81 (321)
T ss_pred             HHHHHHHHhC-cc---cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence            3467777777 65   77777776655444322            56778899999999999999999888888999999


Q ss_pred             HHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          98 EEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        98 eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      ++..+-+++++..+|++..++..+-..
T Consensus        82 ~~l~~~we~~l~~~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   82 EKLAKKWEELLFKNPGSPELWREYLDF  108 (321)
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            999999999999999998887765443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.07  E-value=7.4  Score=37.18  Aligned_cols=46  Identities=22%  Similarity=0.171  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q psy4703          25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEI   76 (401)
Q Consensus        25 y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k----lg~y~~Ai~~~~kAL~l   76 (401)
                      +.+|+..|..+.+..      .+...+++|..|..    ..++.+|..+|++|.+.
T Consensus        93 ~~~A~~~~~~~a~~g------~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~  142 (292)
T COG0790          93 KTKAADWYRCAAADG------LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL  142 (292)
T ss_pred             HHHHHHHHHHHhhcc------cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc
Confidence            444444444433333      44444445554444    22455555555555444

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.64  E-value=1.9  Score=28.14  Aligned_cols=31  Identities=16%  Similarity=0.223  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTD--AKHIHRVEPT  113 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~--~~kal~l~P~  113 (401)
                      .++.+|-.+...|+|++|+..  |+-+..++|.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            344455555555555555555  2244444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PRK09687 putative lyase; Provisional

Probab=87.57  E-value=28  Score=33.59  Aligned_cols=239  Identities=13%  Similarity=0.101  Sum_probs=129.6

Q ss_pred             HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----HHHHHH
Q psy4703          28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF----EEAYTD  103 (401)
Q Consensus        28 Ai~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~----eeA~~~  103 (401)
                      .++.+...+.-.      +......-+.++...|. .++...+.+++  ...++.....-+.++-.+|.-    .+++..
T Consensus        24 ~~~~L~~~L~d~------d~~vR~~A~~aL~~~~~-~~~~~~l~~ll--~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~   94 (280)
T PRK09687         24 NDDELFRLLDDH------NSLKRISSIRVLQLRGG-QDVFRLAIELC--SSKNPIERDIGADILSQLGMAKRCQDNVFNI   94 (280)
T ss_pred             cHHHHHHHHhCC------CHHHHHHHHHHHHhcCc-chHHHHHHHHH--hCCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence            444455555333      45566666666666664 44555555543  233566666667777888873    467777


Q ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhcchhhHHHhhhh
Q psy4703         104 AKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSG  183 (401)
Q Consensus       104 ~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~  183 (401)
                      +...+.-+|+ +.+......   .++............+.+.+..+.. +.+...|..++..|...+.          ..
T Consensus        95 L~~l~~~D~d-~~VR~~A~~---aLG~~~~~~~~~~~~a~~~l~~~~~-D~~~~VR~~a~~aLg~~~~----------~~  159 (280)
T PRK09687         95 LNNLALEDKS-ACVRASAIN---ATGHRCKKNPLYSPKIVEQSQITAF-DKSTNVRFAVAFALSVIND----------EA  159 (280)
T ss_pred             HHHHHhcCCC-HHHHHHHHH---HHhcccccccccchHHHHHHHHHhh-CCCHHHHHHHHHHHhccCC----------HH
Confidence            7666555554 344332222   2222211000011112222222222 2255666666666644333          23


Q ss_pred             HHHHHHHHhhccCchhHHhhHHHHHHHH---HHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchH
Q psy4703         184 VAKQINTLLKCETNEEIYLGEEDFITSI---IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTR  260 (401)
Q Consensus       184 ~v~~L~~ll~~~~~~e~~lA~e~fi~~i---~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~  260 (401)
                      ++..|..+++ +.++++...--..+-.+   ....++.|-+++...++.||..|+.+|.+++..                
T Consensus       160 ai~~L~~~L~-d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~----------------  222 (280)
T PRK09687        160 AIPLLINLLK-DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK----------------  222 (280)
T ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh----------------
Confidence            4666677776 55666522211111111   224567788888888889999999999887642                


Q ss_pred             HHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcc
Q psy4703         261 KLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNV  322 (401)
Q Consensus       261 ~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~  322 (401)
                      .-....-+.|.    +++.|.-|+|+|.-+           .|+.++..|..++...+|.-+
T Consensus       223 ~av~~Li~~L~----~~~~~~~a~~ALg~i-----------g~~~a~p~L~~l~~~~~d~~v  269 (280)
T PRK09687        223 RVLSVLIKELK----KGTVGDLIIEAAGEL-----------GDKTLLPVLDTLLYKFDDNEI  269 (280)
T ss_pred             hHHHHHHHHHc----CCchHHHHHHHHHhc-----------CCHhHHHHHHHHHhhCCChhH
Confidence            11222223332    223577799998876           578888899888875545443

>KOG0686|consensus

Probab=87.50  E-value=3.5  Score=41.62  Aligned_cols=97  Identities=16%  Similarity=0.095  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--------PDDP   81 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--------P~~~   81 (401)
                      .++.+.|.-|..-|+.+.|+++|.++-.-+ .........+.|.-.+-.-+|+|..-..+.++|...-        .-.+
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYC-TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            356678888999999999999999987777 5434566788888888888999999999988887762        1224


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHI  107 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~ka  107 (401)
                      +...--|.+.+.+++|..|..+|-.+
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            56666788899999999999988654

>KOG2062|consensus

Probab=87.25  E-value=9.5  Score=41.39  Aligned_cols=94  Identities=26%  Similarity=0.334  Sum_probs=67.5

Q ss_pred             HHhcHHHHHHHHcCCChhHHHHHHH--hhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcC--CCCCchhHHhHHhhh
Q psy4703         212 IKQGVDILKRLYMSKNENIRVRALV--GLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVN--PARDPDIRRWAAEGL  287 (401)
Q Consensus       212 ~~~gv~~Lk~l~~s~~d~i~~ralv--gLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~--~~~~~~~~~~~~egl  287 (401)
                      .+..-++++++...+++-+|.--+.  +|...|.+             ..    ++.|+.|--  +..+.|.||-||.+|
T Consensus       517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------------nn----kair~lLh~aVsD~nDDVrRaAVial  579 (929)
T KOG2062|consen  517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------------NN----KAIRRLLHVAVSDVNDDVRRAAVIAL  579 (929)
T ss_pred             hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------------ch----hhHHHhhcccccccchHHHHHHHHHh
Confidence            4456778899998888877763332  44444431             11    345665532  456778999999999


Q ss_pred             hhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHh
Q psy4703         288 AYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALK  332 (401)
Q Consensus       288 ay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  332 (401)
                      .+.         |..||+.+-..|++++.+-..-|-||++ +.+-
T Consensus       580 GFV---------l~~dp~~~~s~V~lLses~N~HVRyGaA-~ALG  614 (929)
T KOG2062|consen  580 GFV---------LFRDPEQLPSTVSLLSESYNPHVRYGAA-MALG  614 (929)
T ss_pred             eee---------EecChhhchHHHHHHhhhcChhhhhhHH-HHHh
Confidence            999         7779999999999998884456999988 6653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=87.21  E-value=58  Score=36.85  Aligned_cols=138  Identities=21%  Similarity=0.190  Sum_probs=88.8

Q ss_pred             CCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHHHHh---cHHHHHHHHcCCChh
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQ---GVDILKRLYMSKNEN  229 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i~~~---gv~~Lk~l~~s~~d~  229 (401)
                      +.+...|..+...|.....             ...+..++. +.++++..++..-+-.+...   .++.|..+++..++.
T Consensus       725 D~d~~VR~~Av~aL~~~~~-------------~~~l~~~l~-D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~  790 (897)
T PRK13800        725 DPDHRVRIEAVRALVSVDD-------------VESVAGAAT-DENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPL  790 (897)
T ss_pred             CCCHHHHHHHHHHHhcccC-------------cHHHHHHhc-CCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHH
Confidence            4444556666666554322             122334444 56777766655544333222   257888888888889


Q ss_pred             HHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHH
Q psy4703         230 IRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAA  309 (401)
Q Consensus       230 i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~  309 (401)
                      +|..|+-.|.+++...               .+.......|..  .+...|..|++.|+-+           .+++.+..
T Consensus       791 VR~aA~~aLg~~g~~~---------------~~~~~l~~aL~d--~d~~VR~~Aa~aL~~l-----------~~~~a~~~  842 (897)
T PRK13800        791 VRAAALAALAELGCPP---------------DDVAAATAALRA--SAWQVRQGAARALAGA-----------AADVAVPA  842 (897)
T ss_pred             HHHHHHHHHHhcCCcc---------------hhHHHHHHHhcC--CChHHHHHHHHHHHhc-----------cccchHHH
Confidence            9998888888776420               111223344433  3567899999999754           36777889


Q ss_pred             HHHHHhcCCCCcchhhhhhhHHhhc
Q psy4703         310 LVDVASSVKYKNVWNGTQSDALKDV  334 (401)
Q Consensus       310 l~~~~~~~~~~~~~~~~~~~~~~n~  334 (401)
                      |+.++++. +..|-..++ ..|..+
T Consensus       843 L~~~L~D~-~~~VR~~A~-~aL~~~  865 (897)
T PRK13800        843 LVEALTDP-HLDVRKAAV-LALTRW  865 (897)
T ss_pred             HHHHhcCC-CHHHHHHHH-HHHhcc
Confidence            99999877 788999888 887775

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.05  E-value=2.5  Score=38.74  Aligned_cols=75  Identities=25%  Similarity=0.361  Sum_probs=57.6

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHH
Q psy4703          23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----DPKALFRRCQAYEAIGKFE   98 (401)
Q Consensus        23 g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~----~~kA~~~~a~a~~~lg~~e   98 (401)
                      |+ ++|...|-++-..  |. -..+.+.+.+|.-|. ..+.++|+..+.++|++.+.    ++..+..++.++.++|+++
T Consensus       121 ~d-~~A~~~fL~~E~~--~~-l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  121 GD-QEALRRFLQLEGT--PE-LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             Cc-HHHHHHHHHHcCC--CC-CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            44 5577666654332  21 236888888888776 57789999999999998643    5899999999999999999


Q ss_pred             HHHH
Q psy4703          99 EAYT  102 (401)
Q Consensus        99 eA~~  102 (401)
                      .|.-
T Consensus       196 ~AYi  199 (203)
T PF11207_consen  196 QAYI  199 (203)
T ss_pred             hhhh
Confidence            9974

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.77  E-value=0.84  Score=27.20  Aligned_cols=24  Identities=25%  Similarity=0.152  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAK  105 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~  105 (401)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345566666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2041|consensus

Probab=86.71  E-value=17  Score=39.31  Aligned_cols=47  Identities=19%  Similarity=0.166  Sum_probs=32.0

Q ss_pred             CHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc------HHHHHHHh--hHhhh
Q psy4703         303 DKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD------EFMEEVAK--LEKEE  352 (401)
Q Consensus       303 d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~------~~~~~l~~--~~~~~  352 (401)
                      +|+-+-.|+.++.-+   +-.||..|-.|.-|-..-.      .+|..|+.  |+|..
T Consensus      1055 pP~eiySllALaaca---~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~~iFsk~~ 1109 (1189)
T KOG2041|consen 1055 PPAEIYSLLALAACA---VRAFGTCSKAFMKLEAFEELDDAEKQEYENLAFRIFSKNP 1109 (1189)
T ss_pred             CHHHHHHHHHHHHhh---hhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHHHHhccCC
Confidence            788889999998766   5569999777777763322      56666653  45443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=86.28  E-value=10  Score=36.23  Aligned_cols=117  Identities=18%  Similarity=0.233  Sum_probs=84.0

Q ss_pred             HHHH-hcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhh
Q psy4703         210 SIIK-QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA  288 (401)
Q Consensus       210 ~i~~-~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~egla  288 (401)
                      .|.+ +|++++..++.+.++.++.+|+-.|.-+...   +.+...   . ..-+.+-|+..+..+ .+.+....+.--|.
T Consensus        49 ~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~---~en~~~---I-k~~i~~Vc~~~~s~~-lns~~Q~agLrlL~  120 (254)
T PF04826_consen   49 IIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN---DENQEQ---I-KMYIPQVCEETVSSP-LNSEVQLAGLRLLT  120 (254)
T ss_pred             HHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC---hhhHHH---H-HHHHHHHHHHHhcCC-CCCHHHHHHHHHHH
Confidence            3444 7799999999999999999999988877542   111110   1 123456677666544 35566677888899


Q ss_pred             hccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         289 YLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       289 y~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      -+|+..+..+-++.   .+..|+.++.++ +..+-.=++ -+++||+.--.
T Consensus       121 nLtv~~~~~~~l~~---~i~~ll~LL~~G-~~~~k~~vL-k~L~nLS~np~  166 (254)
T PF04826_consen  121 NLTVTNDYHHMLAN---YIPDLLSLLSSG-SEKTKVQVL-KVLVNLSENPD  166 (254)
T ss_pred             ccCCCcchhhhHHh---hHHHHHHHHHcC-ChHHHHHHH-HHHHHhccCHH
Confidence            99999999888854   688889999888 555666677 89999984433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=85.07  E-value=20  Score=32.15  Aligned_cols=65  Identities=9%  Similarity=0.108  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~---~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      -...+..+|.-|.+.|+++.|++.|.++.+....   -...+++.-.+.+..++|........++-.+
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            5678889999999999999999999998887542   2567788888999999999999998888765

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.03  E-value=7  Score=39.82  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=68.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCC-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTAE-----ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p-----~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      ......+.-.|||..|+...+. |++++.     -.+-+..+++..|-||+-+++|.+|+..|+.+|-.--.....+..+
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~  204 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR  204 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            3445567789999999988654 333310     0234678889999999999999999999999876422111111222


Q ss_pred             HHHH-HHcCCHHHHHHHHHHHHhhCCC--CccHHHHHH
Q psy4703          88 CQAY-EAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLS  122 (401)
Q Consensus        88 a~a~-~~lg~~eeA~~~~~kal~l~P~--~~~~~~~L~  122 (401)
                      .--+ .-....|.....+--++.+.|.  +..+...+.
T Consensus       205 ~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lk  242 (404)
T PF10255_consen  205 SYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLK  242 (404)
T ss_pred             cchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            2112 1234456666667777788886  444544443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=84.73  E-value=3.3  Score=26.97  Aligned_cols=31  Identities=13%  Similarity=0.027  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q psy4703          49 CLKNRAAVYLKQNQNDKVIED--CSKSLEIVPD   79 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~--~~kAL~ldP~   79 (401)
                      .++.+|..+...|+|++|+..  |.-+..++|.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            344556666666666666666  3355555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=84.26  E-value=8.5  Score=29.31  Aligned_cols=58  Identities=24%  Similarity=0.308  Sum_probs=42.4

Q ss_pred             hcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhh
Q psy4703         214 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA  288 (401)
Q Consensus       214 ~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~egla  288 (401)
                      ..++.|.++++++++.++..|+..|.++|.                -+......+++.++ .+...|.+|++-|+
T Consensus        31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------------~~~~~~L~~~l~~~-~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   31 EAIPALIELLKDEDPMVRRAAARALGRIGD----------------PEAIPALIKLLQDD-DDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------------HHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHcCC-CcHHHHHHHHhhcC
Confidence            458888889999999999999999998852                23455556666544 35556888998875

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=83.72  E-value=2.2  Score=44.00  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=80.6

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      ..|..+.-....+......|+|+.|.....-+-... ..   ...+...+-...+++++|++|.......|.-.-.+++.
T Consensus       318 ~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s---~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei  393 (831)
T PRK15180        318 NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-GT---TDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEV  393 (831)
T ss_pred             hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-cC---CchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhh
Confidence            344444445556777888899999988877665554 22   23344445566789999999999999988877777777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      ..--+..-..+|-+++|+-.+++.+.++|..
T Consensus       394 ~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        394 LTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             eeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            7666777788999999999999999998853

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.45  E-value=9.4  Score=33.39  Aligned_cols=84  Identities=10%  Similarity=-0.052  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      ..+.....+.+..++..++.......--+.|+.+....--|..+...|+|++|+..++...+-.|..+-....+..+...
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            34555566666789999999998888889999999999999999999999999999999888777777777777777777


Q ss_pred             HHHH
Q psy4703         128 VTKR  131 (401)
Q Consensus       128 ~~~~  131 (401)
                      +++-
T Consensus        91 l~Dp   94 (153)
T TIGR02561        91 KGDA   94 (153)
T ss_pred             cCCh
Confidence            6654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0529|consensus

Probab=83.42  E-value=44  Score=33.98  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=75.8

Q ss_pred             HHcCCHHH-HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703          20 FKQGDYET-ALDFYTKALKVTAEESHERATCLKNRAAVYLKQN------------QNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus        20 ~~~g~y~e-Ai~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg------------~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      -..|.|+. ++..=.+.+..+ |+   ...+|..+-.++....            -.++-+.....++..+|+...+|+.
T Consensus        39 r~~~~yd~e~l~lt~~ll~~n-pe---~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h  114 (421)
T KOG0529|consen   39 REAKEYDEEHLELTSELLEKN-PE---FYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH  114 (421)
T ss_pred             HhccccchHHHHHHHHHHhhC-ch---hhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence            34555544 566666666777 55   6777766655544322            3556677788899999999999999


Q ss_pred             HHHHHHHcCC--HHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          87 RCQAYEAIGK--FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        87 ~a~a~~~lg~--~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      |..++.+.+.  +..-++.++++++.||.|-..+..-+-+...
T Consensus       115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~  157 (421)
T KOG0529|consen  115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ  157 (421)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHH
Confidence            9999998875  5788889999999999998887755444443

>KOG1464|consensus

Probab=83.41  E-value=34  Score=33.10  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=43.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          59 KQNQNDKVIEDCSKSLEIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        59 klg~y~~Ai~~~~kAL~ldP~~----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      +..+.++|+..|.+++++.|..    .+|+-.+-.+++.+++|++-...|++.+..
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY   94 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY   94 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            4568899999999999998754    578888889999999999988888877653

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=82.67  E-value=8.7  Score=39.48  Aligned_cols=59  Identities=10%  Similarity=0.181  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK   72 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~k   72 (401)
                      .......|.-+|..|+|.++..+-.-..+++ |    .+.+|..+|.|.+...+|.+|..++..
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~ia-P----S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIA-P----SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-C----cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4556677888999999999999999999999 7    588999999999999999999998754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2422|consensus

Probab=82.38  E-value=41  Score=35.74  Aligned_cols=106  Identities=21%  Similarity=0.229  Sum_probs=81.9

Q ss_pred             cCCHHHHHHHHHHHHhhcCCC--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Q psy4703          22 QGDYETALDFYTKALKVTAEE--------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----------------   76 (401)
Q Consensus        22 ~g~y~eAi~~y~~Al~l~~p~--------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-----------------   76 (401)
                      ..-|++|-..|.-|+....|+        +|.+...+...|.+....|+++-|.....++|=.                 
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            456788888888887776343        5888999999999999999998887777766511                 


Q ss_pred             ----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHH
Q psy4703          77 ----VPD---DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAI  127 (401)
Q Consensus        77 ----dP~---~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~-~~~~~~~L~~l~~~  127 (401)
                          .|.   +..++|+.=+.+.+-|.+.-|.++++-.+.++|. ||-....+-.++..
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL  389 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL  389 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH
Confidence                122   2557778888889999999999999999999998 87666555555443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=82.33  E-value=11  Score=34.57  Aligned_cols=69  Identities=10%  Similarity=0.108  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CccHHHHHHHHHHHHHHHHHH
Q psy4703          64 DKVIEDCSKSLEIVP--DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT----NKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        64 ~~Ai~~~~kAL~ldP--~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~----~~~~~~~L~~l~~~~~~~~~a  134 (401)
                      ++|..-|-++=. .|  +++...+.+|..|. ..+-+.|+..+-+++++.+.    |+++...|+.++...++...+
T Consensus       123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            556666644322 23  56788888886555 77888999999999988654    367777888887777766543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.05  E-value=13  Score=28.89  Aligned_cols=62  Identities=21%  Similarity=0.198  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK---ALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k---A~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      -....|.-++...+.++|+...+++++..++...   ++-.+.++|...|+|++++.+.-+-+++
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666788899999999999998776544   4556778899999999998876554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=81.91  E-value=7.2  Score=38.55  Aligned_cols=98  Identities=13%  Similarity=0.078  Sum_probs=73.4

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Q psy4703          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--VPDDPKALFRRCQAYEAIGKFEE   99 (401)
Q Consensus        22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l--dP~~~kA~~~~a~a~~~lg~~ee   99 (401)
                      .-+|..-..+|+-...+. |    .+.+-.|++.+.-+..=...++...+...+-  -..+.-.+--+|..+.++|+-++
T Consensus       309 dtDW~~I~aLYdaL~~~a-p----SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~e  383 (415)
T COG4941         309 DTDWPAIDALYDALEQAA-P----SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEE  383 (415)
T ss_pred             CCChHHHHHHHHHHHHhC-C----CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHH
Confidence            346676666777777777 6    4667788988887777777777777665554  22455677789999999999999


Q ss_pred             HHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703         100 AYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus       100 A~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      |...|.+++.+.++..+......++
T Consensus       384 Ar~aydrAi~La~~~aer~~l~~r~  408 (415)
T COG4941         384 ARAAYDRAIALARNAAERAFLRQRL  408 (415)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Confidence            9999999999998876655554443

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=81.70  E-value=4.9  Score=34.77  Aligned_cols=51  Identities=18%  Similarity=0.234  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      ......+++..+..|+|.-|......++..+|+|.+++.....++..++..
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            344555566666666666666666666666666666666666666666554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=81.68  E-value=24  Score=36.14  Aligned_cols=85  Identities=13%  Similarity=0.112  Sum_probs=61.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          52 NRAAVYLKQNQNDKVIEDCSKSLEIV--------PD-----DP-----KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        52 n~a~~y~klg~y~~Ai~~~~kAL~ld--------P~-----~~-----kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                      .-|..+++.++|..|+--|..+|++.        |.     ++     -.--.+..||+.+++.+-|+....+.+-++|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            34556667777777777777777663        21     11     11245788999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHHHHHHHH
Q psy4703         114 NKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus       114 ~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ...-+..-+.+...+.++.++.+
T Consensus       261 ~frnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHH
Confidence            86666666667777777766655

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=81.21  E-value=2  Score=25.51  Aligned_cols=23  Identities=17%  Similarity=0.007  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCS   71 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~   71 (401)
                      +++++|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666677666666543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.85  E-value=15  Score=34.44  Aligned_cols=68  Identities=15%  Similarity=0.167  Sum_probs=54.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703          55 AVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (401)
Q Consensus        55 ~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~  122 (401)
                      ..+++.+...+|+.....-++-+|.+.....-+-+.|.-.|+|+.|...++-+-+++|++..-...+.
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr   76 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR   76 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence            35667788888999888888889988888777888888899999999999988889888765444443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.84  E-value=4.7  Score=27.59  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=17.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHR  109 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~  109 (401)
                      +.+|.+|..+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4567777777777777777777763

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.78  E-value=7.9  Score=29.75  Aligned_cols=10  Identities=10%  Similarity=0.398  Sum_probs=3.7

Q ss_pred             cCCHHHHHHH
Q psy4703          60 QNQNDKVIED   69 (401)
Q Consensus        60 lg~y~~Ai~~   69 (401)
                      .|++.+|+.+
T Consensus        19 ~gr~~eAi~~   28 (75)
T cd02682          19 EGNAEDAITN   28 (75)
T ss_pred             cCCHHHHHHH
Confidence            3333333333

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=80.22  E-value=16  Score=30.94  Aligned_cols=66  Identities=14%  Similarity=0.184  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh-------hcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALK-------VTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~-------l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l   76 (401)
                      -+-.+...+...|+|++++..-.+++.       +.+.+......+.+++|.++-.+|+.++|+..|..+-++
T Consensus        57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            344556678889999988877666664       331112456677889999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.04  E-value=4  Score=31.37  Aligned_cols=31  Identities=32%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKV   38 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l   38 (401)
                      ++..+..++..+=+.|++.+|+.+|++++++
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4556666677777777777777777766654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	401
3now_A	810	Unc-45 From Drosophila Melanogaster Length = 810		2e-39
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		3e-14
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-11
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-11
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		3e-09
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-09
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		7e-09
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		9e-09
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		2e-08
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		2e-08
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		4e-08
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		8e-08
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		9e-08
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		2e-07
1wao_1	477	Pp5 Structure Length = 477		3e-07
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		4e-07
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		5e-07
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		8e-07
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		4e-06
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		5e-06
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-06
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		1e-05
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-05
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-05
3fwv_A	128	Crystal Structure Of A Redesigned Tpr Protein, T-Mo		3e-05
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		3e-05
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		5e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		7e-05
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-04
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		8e-04

>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster Length = 810

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/95 (76%), Positives = 82/95 (86%)
Query: 210 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 269
           ++ +QGVDILKRLY SKN+ IRVRALVGLCKLGS GG DA+IRPF DG+  KLAEACRRF
Sbjct: 326 ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRF 385
Query: 270 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDK 304
           L+ P +D DIRRWAA+GLAYLTLDAE KE LIEDK
Sbjct: 386 LIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDK 420

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +L++ GN  FK GDY  AL  YT+AL + A    ++A   +NRAA +LK    DK   + 
Sbjct: 30  QLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEA 88
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121
           SK++E    D KAL+RR QA E +G+ ++A  D +    +EP NK  Q  L
Sbjct: 89  SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
            K  GN+ +KQGDY+ A+++Y KAL++        A+   N    Y KQ    K IE   
Sbjct: 12  WKNLGNAYYKQGDYQKAIEYYQKALELDPN----NASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 72  KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           K+LE+ P++ KA +RR  AY   G +++A  D +    ++P N
Sbjct: 68  KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVT-----AEESHERA-------TCLKNRAAVYLK 59
           LK  GN+ FK  ++E A+  YTK L+       A E  + A       +C+ N  A  LK
Sbjct: 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285
Query: 60  QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
            +     ++ C ++LEI P + KAL+RR Q ++ + ++++A  D K    + P +KAIQ 
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 120 VLSRL 124
            L ++
Sbjct: 346 ELLKV 350

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESH------ERATCLK-----NRAAVYLKQ 60
           +KE G   FK+G Y+ AL  Y K +     ES       ++A  L+     N A  +LK 
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209
Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120
                 IE C+K+LE+  ++ K LFRR +A+ A+  FE A  D + + ++ P NKA +  
Sbjct: 210 QAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
Query: 121 LSRLFAIVTKRMQENEQLQNKVH-NMFK 147
           L    A+  +R++     + K++ NMF+
Sbjct: 270 L----AVCQQRIRRQLAREKKLYANMFE 293

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           GN+ +KQGDY+ A+++Y KAL++        A    N    Y KQ   D+ IE   K+LE
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           + P++ +A +    AY   G ++EA
Sbjct: 72  LYPNNAEAWYNLGNAYYKQGDYDEA 96

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           GN+ +KQGDY+ A+++Y KAL++        A    N    Y KQ   D+ IE   K+LE
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + P++ +A +    AY   G ++EA    +    ++P N
Sbjct: 72  LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
           LK+ GN  F+   Y+ A+ +Y  AL     E  E      N +A Y+      KV+E  +
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWAL-----ELKEDPVFYSNLSACYVSVGDLKKVVEMST 63
Query: 72  KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-IQPVLSR 123
           K+LE+ PD  K L RR  A E +GKF +A  D   +      N A I+P+L R
Sbjct: 64  KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LK  GN  F   ++  A+ +Y  A+++   E         N +A Y+     +KVIE  
Sbjct: 27  QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP----VFYSNISACYISTGDLEKVIEFT 82
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH-RVEPTNKAIQPVLSR 123
           +K+LEI PD  KAL RR  A E++G F +A  D   +    +    +I+P+L R
Sbjct: 83  TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LK  GN  F   ++  A+ +Y  A+++   E         N +A Y+     +KVIE  
Sbjct: 23  QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP----VFYSNISACYISTGDLEKVIEFT 78
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH-RVEPTNKAIQPVLSR 123
           +K+LEI PD  KAL RR  A E++G F +A  D   +    +    +I+P+L R
Sbjct: 79  TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 132

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 16/148 (10%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESH------ERATCLK-----NRAAVYLKQ 60
           +KE G   FK+G Y+ AL  Y K +     ES       ++A  L+     N A  +LK 
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209
Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120
                 IE C+K+LE+  ++ K L RR +A+ A+  FE A  D + + ++ P NKA +  
Sbjct: 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
Query: 121 LSRLFAIVTKRMQENEQLQNKVH-NMFK 147
           L    A+  +R++     + K++ NMF+
Sbjct: 270 L----AVCQQRIRRQLAREKKLYANMFE 293

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 6   MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
           M   N+LKE GN A   G+ + AL  Y++A+K+             NR+A Y K+    K
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQK 56
Query: 66  VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125
             ED  K++++ PD  K   R+  A E + +FEEA    +   + E  N  ++  L  + 
Sbjct: 57  AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116
Query: 126 A 126
           A
Sbjct: 117 A 117

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           GN+ +KQGDY+ A+++Y KAL++        A    N    Y KQ   D+ IE   K+LE
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           + P   +A +    AY   G ++EA
Sbjct: 64  LDPRSAEAWYNLGNAYYKQGDYDEA 88

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 12  LKESGNSAFKQGDYETALDFYTKAL------------KVTAEESHERATCLKNRAAVYLK 59
           +KE G   FK G Y  A+  Y K +            +  A ES   A  L N A  YLK
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL-NLAMCYLK 329
Query: 60  QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
             +  K +E C K+L +   + K L+RR +A   + +FE A  D + +  V P NKA + 
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR- 388
Query: 120 VLSRLFAIVTKRMQENEQLQNKVHNMFK 147
              ++F    K  + NE+ +    NMFK
Sbjct: 389 --LQIFMCQKKAKEHNERDRRTYANMFK 414

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LK   N  FK  DYE A+ FY++A+++        A    NR+  YL+       + D 
Sbjct: 8   ELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDA 63
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
           ++++E+     K  +RR  +  A+GKF  A  D + + +V+P +K
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 12  LKESGNSAFKQGDYETALDFYTKAL------------KVTAEESHERATCLKNRAAVYLK 59
           +KE G   FK G Y  A+  Y K +            +  A ES   A  L N A  YLK
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL-NLAMCYLK 329
Query: 60  QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
             +  K +E C K+L +   + K L+RR +A   + +FE A  D + +  V P NKA + 
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 120 VLSRLFAIVTKRMQENEQLQNKVH-NMFK 147
            +S    +  K+ +E+ +   +++ NMFK
Sbjct: 390 QIS----MCQKKAKEHNERDRRIYANMFK 414

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           D  +    +LK   N  FK  DYE A+ FY++A+++        A    NR+  YL+   
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTEC 62
Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
               + D ++++E+     K  +RR  +  A+GKF  A  D + + +V+P +K
Sbjct: 63  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           K KE GN A+K+ D++TAL  Y KA ++         T + N+AAVY ++   +K  E C
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHIH 108
            K++E+  ++ +   +  +AY  IG     EE Y DA H +
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           K KE GN A+K+ D++TAL  Y KA ++         T + N+AAVY ++   +K  E C
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHIH 108
            K++E+  ++ +   +  +AY  IG     EE Y DA H +
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
          GN+ +KQGDY+ A+++Y KAL++        A    N    Y KQ   D+ IE   K+LE
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDP----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 76 IVPDDPKA 83
          + P++ +A
Sbjct: 72 LDPNNAEA 79

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
           +K  GN  F++GDY  A+  YT+A+K   ++    A    NRAA Y K  +    ++DC 
Sbjct: 19  VKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCE 74
Query: 72  KSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           + +++ P   K   R+  A EA+  + +A
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKA 103

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH-------------ERAT 48
           ++  +   ++ K  GNS FK+   E A+  Y  A+    ++                +  
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231
Query: 49  CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108
           C  N AA  +K  + D+ I  C+  L     +PKALFRR +A   +G+ + A  D +   
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291
Query: 109 RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF 150
           +  P +KAI+  L  L        ++ + L  K   M+K +F
Sbjct: 292 KYAPDDKAIRRELRAL-------AEQEKALYQKQKEMYKGIF 326

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
          GN+ +KQGDY+ A+++Y KAL++        A    N    Y KQ   D+ IE   K+LE
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 76 IVP 78
          + P
Sbjct: 66 LDP 68

>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy), In Complex With Meevf Peptide Length = 128

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           K KE GN A+K+ D++TAL  Y KA ++         T + N+AAVY ++   +K  E C
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYIVNQAAVYFEKGDYNKCRELC 61
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHIH 108
            K++E+  ++ +       AY  IG     EE Y DA H +
Sbjct: 62  EKAIEVGRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFY 102

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
          +KLK  GN+A  + +Y  A+D YT+AL +    +      L NRAA Y    Q++K  ED
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQHEKAAED 67
Query: 70 CSKSLEIVPDDPKALFR 86
             +  + P   KA  R
Sbjct: 68 AELATVVDPKYSKAWSR 84

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 17/146 (11%)
Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVT--------------AEESHERAT 48
           D+ +     L++ GN  F Q DY+ A+D Y  AL                  E   +   
Sbjct: 5   DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 49  CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108
              N +  YL      +  E  S+ L+    + KALFRR +A  A  K +EA  D K + 
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 109 RVEPTNKAIQPVLSRLFAIVTKRMQE 134
           R  P   A   V++R   IVT+R  E
Sbjct: 125 RNHP---AAASVVAREMKIVTERRAE 147

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LK  GN   K  ++E A+ FY KA+++        A    NRAA Y K       ++DC
Sbjct: 14  RLKTEGNEQMKVENFEAAVHFYGKAIELNPA----NAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
            +++ I P   KA  R   A  ++ K  EA    K    ++P N+
Sbjct: 70  ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 13  KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           K  GN  FK+GDY TA+  Y +A+K       E A    NRAA   K  +  + ++DC  
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 73  SLEIVPDDPKALFRRCQAYEAI---GKFEEAYTDAKHIHRVEPTNK 115
            + +     K   R+     A+    K + AY DA     V+P+N+
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ---VDPSNE 115

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            +LKE GN  F    Y  A   Y +A+      +   A    NRA  YLK  Q ++ + D
Sbjct: 10  QELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALAD 65
Query: 70  CSKSLEIVPDDPKALF--RRCQ----AY-EAIGKFEEAYTDAK 105
           C ++LE+     KA F   +CQ    +Y EAI   + AY+ AK
Sbjct: 66  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	401
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-38
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-36
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-34
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-33
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-31
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-31
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	6e-30
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-29
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-29
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-27
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-27
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-27
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-27
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-14
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-27
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-27
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-25
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-24
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-23
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-23
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-12
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-08
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	7e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-04

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  135 bits (341), Expect = 1e-38
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            +L++ GN  FK GDY  AL  YT+AL +      ++A   +NRAA +LK    DK   +
Sbjct: 29  EQLRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETE 87

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
            SK++E    D KAL+RR QA E +G+ ++A  D +    +EP NK  Q  L  +    +
Sbjct: 88  ASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSS 147

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  129 bits (325), Expect = 4e-36
 Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 18/153 (11%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE--------------RATCLKNRAA 55
             L++ GN  F Q DY+ A+D Y  AL                             N + 
Sbjct: 12  EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQ 71

Query: 56  VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
            YL      +  E  S+ L+    + KALFRR +A  A  K +EA  D K + R  P   
Sbjct: 72  CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131

Query: 116 AIQPVLSRLFAIVTKRMQENEQLQNKV-HNMFK 147
           ++   ++R   IVT+R  E +         MF+
Sbjct: 132 SV---VAREMKIVTERRAEKKADSRVTYSKMFQ 161

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  124 bits (313), Expect = 4e-34
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE------------RATCLKNRAAVY 57
             +KE GN  FK+ +   A+  Y +AL                       +C  N A  Y
Sbjct: 39  FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 98

Query: 58  LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
            K     K I+  SK L+I  ++ KAL++   A    G  EEA  +      + P N  I
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158

Query: 118 QPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVN 164
           +      + +   +++E  +        F  +FD     +++  + N
Sbjct: 159 R----NSYELCVNKLKEARKKDKL---TFGGMFDKGPLYEEKKNSAN 198

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  121 bits (305), Expect = 3e-33
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            +LK   N  FK  DYE A+ FY++A+++        A    NR+  YL+       + D
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGD 69

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
            ++++E+     K  +RR  +  A+GKF  A  D + + +V+P +K  +        IV 
Sbjct: 70  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 129

Query: 130 KRMQENEQLQNKVHNMFKYVFDTSA 154
           ++  E     ++         D  +
Sbjct: 130 QKAFERAIAGDEHKRSVVDSLDIES 154

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  121 bits (304), Expect = 2e-31
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKV-------TAEESHE----RATCLKNRAAVYL 58
             +KE G   FK+G Y+ AL  Y K +         + EE+ +    R     N A  +L
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207

Query: 59  KQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           K       IE C+K+LE+  ++ K L RR +A+ A+  FE A  D + + ++ P NKA +
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267

Query: 119 PVLSRLFAIVTKRMQENEQLQNKVHNMFK 147
             L+       +  ++  + +    NMF+
Sbjct: 268 TQLAVC---QQRIRRQLAREKKLYANMFE 293

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  114 bits (287), Expect = 3e-31
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           N+LKE GN A   G+ + AL  Y++A+K+             NR+A Y K+    K  ED
Sbjct: 5   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYED 60

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
             K++++ PD  K   R+  A E + +FEEA    +   + E  N  ++  L  +
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  111 bits (279), Expect = 6e-30
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            + K  GN  FK+GDY TA+  Y +A+K   E     A    NRAA   K  +  + ++D
Sbjct: 14  QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDD 69

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
           C   + +     K   R+     A+ ++ +A    +   +V+P+N+  +  +  
Sbjct: 70  CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  110 bits (277), Expect = 2e-29
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            +LKE GN  F    Y  A   Y +A+          A    NRA  YLK  Q ++ + D
Sbjct: 10  QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALAD 65

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
           C ++LE+     KA F   Q    +  ++EA  + +  + +    +
Sbjct: 66  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  109 bits (275), Expect = 3e-29
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
             +K  GN  F++GDY  A+  YT+A+K   ++    A    NRAA Y K  +    ++D
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKD 72

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
           C + +++ P   K   R+  A EA+  + +A    +    ++ + K       R 
Sbjct: 73  CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  109 bits (274), Expect = 1e-27
 Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 11/197 (5%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            +LKE GN  F    Y  A   Y +A+          A    NRA  YLK  Q ++ + D
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALAD 60

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK-AIQPVLSRLFAIV 128
           C ++LE+     KA F   Q    +  ++EA  + +  + +    +      +     I 
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 129 TKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLARE------MSGAEMLLKS 182
            K+   + + +        + + T     +R   +               +   +  +++
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

Query: 183 GVAKQINTLLKCETNEE 199
              K +  + +  +  +
Sbjct: 181 KHDKYMADMDELFSQVD 197

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  110 bits (276), Expect = 2e-27
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 16/151 (10%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKV---------TAEESHE----RATCLKNRAAV 56
           ++ K  GNS FK+   E A+  Y  A+             +        +  C  N AA 
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239

Query: 57  YLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
            +K  + D+ I  C+  L     +PKALFRR +A   +G+ + A  D +   +  P +KA
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299

Query: 117 IQPVLSRLFAIVTKRMQENEQLQNKVHNMFK 147
           I+  L  L     +     ++ +     +FK
Sbjct: 300 IRRELRAL---AEQEKALYQKQKEMYKGIFK 327

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  104 bits (261), Expect = 2e-27
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            + +  G   F + D+  A+  YT+ +K   E+    A    NRAA   K     + I D
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIAD 60

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
           C+K++E  P+  +A  R+  A  A+ ++  A          +    
Sbjct: 61  CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  110 bits (276), Expect = 3e-27
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 17/150 (11%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKAL------KVTAEESHE------RATCLKNRAAVY 57
             LK  GN+ FK  ++E A+  YTK L      +  AE++          +C+ N  A  
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 283

Query: 58  LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
           LK +     ++ C ++LEI P + KAL+RR Q ++ + ++++A  D K    + P +KAI
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343

Query: 118 QPVLSRLFAIVTKRMQENEQLQNKVH-NMF 146
           Q  L +    V ++++  +  +   +  MF
Sbjct: 344 QAELLK----VKQKIKAQKDKEKAAYAKMF 369

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  112 bits (281), Expect = 5e-27
 Identities = 88/208 (42%), Positives = 124/208 (59%), Gaps = 13/208 (6%)

Query: 120 VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMS--GAE 177
            L+R++  +    +   +  +++    K     +  M+ +V     +  L       G +
Sbjct: 227 CLARIYENMYYD-EAKARFTDQIDEYIKDKLL-APDMESKVRVTVAITALLNGPLDVGNQ 284

Query: 178 MLLKSGVAKQINTLLKCETNEEIYLGEEDFITS---------IIKQGVDILKRLYMSKNE 228
           ++ + G+ + I  +   +   +  +  E  I +         + +QGVDILKRLY SKN+
Sbjct: 285 VVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKND 344

Query: 229 NIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA 288
            IRVRALVGLCKLGS GG DA+IRPF DG+  KLAEACRRFL+ P +D DIRRWAA+GLA
Sbjct: 345 GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA 404

Query: 289 YLTLDAEVKEALIEDKPALAALVDVASS 316
           YLTLDAE KE LIEDK ++ AL+D+A  
Sbjct: 405 YLTLDAECKEKLIEDKASIHALMDLARG 432

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 73.3 bits (179), Expect = 3e-14
 Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 24/207 (11%)

Query: 135 NEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKC 194
           N +   KV  M    FD + P+DKR  A NNLVVLA+E +GAE+L K     ++ +L K 
Sbjct: 1   NAKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKV 60

Query: 195 ETNEEIYL-----------GEEDFITSIIKQ-GVDILKRLYMSKNENIRVRALVGLCK-L 241
           E +++IY+              +    ++ + GV    R+   K+EN    A   L   L
Sbjct: 61  EKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTIL 120

Query: 242 GSMGGSDASIRPFADGST--------RKLAEACRRFLVNPARDPDIRRWAAEGLAYL--T 291
            ++ G         D             L       + +       R    E +      
Sbjct: 121 NALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHY 180

Query: 292 LDAEVKEALIEDKPALAALVDVASSVK 318
              E  E L+E +  L  L+DV S ++
Sbjct: 181 TALEWAERLVEIRG-LCRLLDVCSELE 206

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  110 bits (276), Expect = 8e-27
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALK-------VTAEESHE----RATCLKNR 53
            +     +KE G   FK G Y  A+  Y K +        ++ +ES            N 
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323

Query: 54  AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113
           A  YLK  +  K +E C K+L +   + K L+RR +A   + +FE A  D + +  V P 
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383

Query: 114 NKAIQPVLSRLFAIVTKRMQENEQLQNKV-HNMFK 147
           NKA +       ++  K+ +E+ +   ++  NMFK
Sbjct: 384 NKAAR----LQISMCQKKAKEHNERDRRIYANMFK 414

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  102 bits (257), Expect = 9e-27
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
           +  +  +LK  GN   K  ++E A+ FY KA+++        A    NRAA Y K     
Sbjct: 8   DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYA 63

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
             ++DC +++ I P   KA  R   A  ++ K  EA    K    ++P N+  +
Sbjct: 64  GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYK 117

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  100 bits (252), Expect = 1e-25
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           +KLK  GN+A  + +Y  A+D YT+AL +           L NRAA Y    Q++K  ED
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAED 67

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
              +  + P   KA  R   A   +  ++ A    +     E    +    + R      
Sbjct: 68  AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA--MKRGLETTK 125

Query: 130 KRMQENEQ 137
           ++++E  +
Sbjct: 126 RKIEEANR 133

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  104 bits (261), Expect = 1e-24
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LK   N  FK  DYE A+ FY++A+    E +   A    NR+  YL+       + D 
Sbjct: 8   ELKTQANDYFKAKDYENAIKFYSQAI----ELNPSNAIYYGNRSLAYLRTECYGYALGDA 63

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
           ++++E+     K  +RR  +  A+GKF  A  D + + +V+P +K  +        IV +
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 123

Query: 131 RMQEN 135
           +  E 
Sbjct: 124 KAFER 128

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 29/70 (41%)

Query: 45  ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA 104
           +RA  LK +A  Y K    +  I+  S+++E+ P +      R  AY     +  A  DA
Sbjct: 4   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63

Query: 105 KHIHRVEPTN 114
                ++   
Sbjct: 64  TRAIELDKKY 73

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 92.4 bits (230), Expect = 6e-23
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 16/136 (11%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            K KE GN A+K+ D++TAL  Y KA ++         T + N+AAVY ++   +K  E 
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCREL 60

Query: 70  CSKSLEIVPDDP-------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122
           C K++E+  ++        KA  R   +Y    K+++A            T   +     
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL----- 115

Query: 123 RLFAIVTKRMQENEQL 138
           +      K ++E E+L
Sbjct: 116 KKCQQAEKILKEQERL 131

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 92.3 bits (230), Expect = 6e-23
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 11/123 (8%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           +   +     K+ GN+A+KQ D+E A   Y KA+++         T   N+AAVY ++ +
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKK 57

Query: 63  NDKVIEDCSKSLEIVPDDP-------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
             + ++ C K++E+  +         KA+ R   A++       A              +
Sbjct: 58  FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117

Query: 116 AIQ 118
            ++
Sbjct: 118 LVK 120

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 87.8 bits (218), Expect = 2e-21
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 6   MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
           M+ + K KE GNS FKQG Y  A+  Y + +    +          N+A   +K  +  +
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQ 56

Query: 66  VIEDCSKSLEIVPDDPKALFRR------CQAYEAIGKFEEAYTDAKHIHRVEPTN 114
            I+ C + L           R         A  A+G  +    +   +      +
Sbjct: 57  AIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 94.4 bits (235), Expect = 2e-21
 Identities = 27/120 (22%), Positives = 47/120 (39%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
             +   NKL ES     + G Y  A   Y   +K     +       +     + K  + 
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
            + I  CS+ L++ PD+  AL  R +AY     ++EA  D +        ++ I+  L +
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
           +   +M D  K  E G      G    AL  +  A+    +           RA V+L  
Sbjct: 18  LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAM 73

Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120
            ++   + D +K +++  D   A  +R       GK +EA  D K + +  P+    +  
Sbjct: 74  GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133

Query: 121 LSRLFAI 127
            S+L   
Sbjct: 134 QSQLIKS 140

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 25/137 (18%), Positives = 60/137 (43%), Gaps = 4/137 (2%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
             ++  +L+    +AF  GDY  A+ F  K L+V   +    A   + RA  ++K+ +  
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD----AELRELRAECFIKEGEPR 194

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
           K I D   + ++  D+ +A ++    Y  +G  E + ++ +   +++  +K       ++
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254

Query: 125 FAIVTKRMQENEQLQNK 141
             +        E +++ 
Sbjct: 255 KKLNKLIESAEELIRDG 271

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 13/134 (9%), Positives = 43/134 (32%), Gaps = 16/134 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                K+G+   A+     A K+     ++        + +Y +   ++  + +  + L+
Sbjct: 184 AECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239

Query: 76  IVPDDPKA------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
           +  D  +             L    +     G++ +A +  + + + EP+          
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299

Query: 124 LFAIVTKRMQENEQ 137
                  + ++  +
Sbjct: 300 RICHCFSKDEKPVE 313

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            +   K      A+   ++ L++  E  +  A  LK+RA  YL +   D+ I+D   + E
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQM--EPDNVNA--LKDRAEAYLIEEMYDEAIQDYETAQE 357

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
              +D +      +A   + + ++ 
Sbjct: 358 HNENDQQIREGLEKAQRLLKQSQKR 382

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 94.9 bits (235), Expect = 4e-21
 Identities = 39/281 (13%), Positives = 92/281 (32%), Gaps = 27/281 (9%)

Query: 58  LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
                    + +  +      +D    +      + + KF+  + + + + +      + 
Sbjct: 124 FSNKDATIALLNELQIRIHYGEDTHVTYLLSIILQLLNKFKYNFKEVRFLVKELILRISE 183

Query: 118 QPVLSRLFAIVTKRMQ-ENEQLQNKVHNMFKYVF---DTSAPMDKRVTAVNNLVVLAREM 173
             V S +  I  +      +     V +    +    +     D     V  L  L   +
Sbjct: 184 DEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSL 243

Query: 174 --SGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITS----------IIKQGVDILKR 221
               +E+ L  G++K     +  E + +        ++S          I +  + +L+R
Sbjct: 244 TTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLER 303

Query: 222 LYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRR 281
                 E++++ + + L K  S              + ++L+E     +    R      
Sbjct: 304 SL--NVEDVQIYSALVLVKTWSFTK-------LTCINLKQLSEIFINAISR--RIVPKVE 352

Query: 282 WAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNV 322
            + E LAYL+L A VK  +  ++     L+ +  S K  + 
Sbjct: 353 MSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHC 393

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 92.0 bits (229), Expect = 8e-21
 Identities = 26/115 (22%), Positives = 45/115 (39%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
             +   NKL ES     + G Y  A   Y   +K     +       +     + K  + 
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
            + I  CS+ L++ PD+  AL  R +AY     ++EA  D +        ++ I+
Sbjct: 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.1 bits (206), Expect = 9e-18
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 8   DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVI 67
           D  K  E G      G    AL  +  A+    +           RA V+L   ++   +
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAAL 57

Query: 68  EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127
            D +K + +  D   A  +R       GK +EA  D K + +  P+ +  +   S+L   
Sbjct: 58  PDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117

Query: 128 VTKRMQEN 135
              +   +
Sbjct: 118 DEMQRLRS 125

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
             ++  +L+     AF   DY  A+ F  K L+V   +    A   + RA  ++K+ +  
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD----AELRELRAECFIKEGEPR 171

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
           K I D   + ++  D+ +A ++    Y  +G  E + ++ +   +++  +K       ++
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231

Query: 125 FAIVTKRMQENE 136
             +        E
Sbjct: 232 KKLNKLIESAEE 243

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            +   K      A+   ++ L++  E  +  A  LK+RA  YL +   D+ I+D   + E
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQM--EPDNVNA--LKDRAEAYLIEEMYDEAIQDYEAAQE 334

Query: 76  IVPDDPKALFRRCQAYEAIGKFEE 99
              +D +      +A   + + ++
Sbjct: 335 HNENDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 12/134 (8%), Positives = 40/134 (29%), Gaps = 16/134 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                K+G+   A+     A     +   +        + +Y +   ++  + +  + L+
Sbjct: 161 AECFIKEGEPRKAISDLKAAS----KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216

Query: 76  IVPDDPKALFRRCQ------------AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
           +  D  +      Q                 G++ +A +  + + + EP+          
Sbjct: 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE 276

Query: 124 LFAIVTKRMQENEQ 137
                  + ++  +
Sbjct: 277 RICHCFSKDEKPVE 290

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 93.3 bits (232), Expect = 8e-21
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                LK+ GN  F+   Y+ A+ +Y  AL++      E      N +A Y+      KV
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSVGDLKKV 58

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH-RVEPTNKAIQPVLSRLF 125
           +E  +K+LE+ PD  K L RR  A E +GKF +A  D   +    +  + +I+P+L R  
Sbjct: 59  VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118

Query: 126 A 126
            
Sbjct: 119 N 119

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
                     L+ +G   F + D   A +   KA+++       R       A +   +N
Sbjct: 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPRVNSYIYMALIMADRN 284

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
            + +      K+L++  ++    + R Q    +  +++A  D
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKD 326

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +   +N Y  +         + D     +++ KALK+ +      ++   +R  +     
Sbjct: 266 LFPRVNSYIYM---ALIMADRNDSTEYYNYFDKALKLDSNN----SSVYYHRGQMNFILQ 318

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
             D+  +D  K+ E+ P++     +         KF++  T 
Sbjct: 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL 360

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.5 bits (152), Expect = 8e-11
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G   F   +Y+ A   + KA     E   E        A +  ++N+ D      S++  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAK----ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
             P+ P+      +       F++A
Sbjct: 367 KFPEAPEVPNFFAEILTDKNDFDKA 391

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 6/133 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQNQND--KVIEDC 70
                 + D++ AL  Y  A+++           A  +     +       +  +     
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS-RLFAIVT 129
            K+ ++ P   +A     Q        +EA T  +    +  T +     ++    A V 
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQ 498

Query: 130 KRMQENEQLQNKV 142
           +R++ +  L  K+
Sbjct: 499 QRIRSDPVLAKKI 511

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 22/112 (19%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
              A+++  ++     +++A +   E            A +   +N  DK ++    ++E
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPE----APEVPNFFAEILTDKNDFDKALKQYDLAIE 400

Query: 76  IVPDDPKALFRRCQAY---------EAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           +                          +  F EA              KA +
Sbjct: 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL---------EKASK 443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 8/121 (6%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK---- 59
            +  +      S  S F     E     Y ++ +   E  +  +   K     Y K    
Sbjct: 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211

Query: 60  ----QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
                   ++ ++  ++  ++      +L               A+ D K    + P   
Sbjct: 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN 271

Query: 116 A 116
           +
Sbjct: 272 S 272

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
                    +LK  GN  F   ++  A+ +Y  A+++   E         N +A Y+   
Sbjct: 18  PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTG 73

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
             +KVIE  +K+LEI PD  KAL RR  A E++G F +A  D
Sbjct: 74  DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
                N    L  +G   F + +   A     +++ +     H         A     + 
Sbjct: 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPTPNSYIFLALTLADKE 290

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            + +  +   K++++ P+ P   + R Q Y  +  ++ A
Sbjct: 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +    N Y  L     +   + + +    F+ KA+ +  E          +R  +Y    
Sbjct: 272 LHPTPNSYIFL---ALTLADKENSQEFFKFFQKAVDLNPEY----PPTYYHRGQMYFILQ 324

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
                 ED  K+  + P++     +        GKF E+
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.5 bits (160), Expect = 8e-12
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 23  GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82
           G +        +   ++  +    A  LKNR   +      ++ I+    ++E+ P++P 
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 83  ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
                   Y + G  E+               KA++
Sbjct: 61  FYSNISACYISTGDLEKVIEFT---------TKALE 87

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.4 bits (144), Expect = 9e-10
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G   F   DY+ A + + KA  +  E            A +  KQ +  +     +++  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPEN----VYPYIQLACLLYKQGKFTESEAFFNETKL 372

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
             P  P+      +     G F+ A        R+E   + I
Sbjct: 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 16  GNSAFKQGDYETALDFYTKALKV------------TAEESHERATCLKNRAAVYLKQNQN 63
                 +GD++TA+  Y  A ++                         ++    L + + 
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           +  I+  +K+ E+ P   +A     Q    + K +EA
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 12/103 (11%), Positives = 24/103 (23%), Gaps = 4/103 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
               +KQG +  +  F+ +                   A +   +   D  I+    +  
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLK----FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           +     K                   +        E  N AI+
Sbjct: 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 14/115 (12%), Positives = 35/115 (30%), Gaps = 3/115 (2%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           + +    ++   E  +S     +Y+TA    + AL+     S      L     +    +
Sbjct: 167 LASFFGIFDSHLE-VSSVNTSSNYDTAYALLSDALQ--RLYSATDEGYLVANDLLTKSTD 223

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
               ++   +    +  +   AL      +       +A    +    + PT  +
Sbjct: 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNS 278

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 6/99 (6%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +        +      +   +  +  A+   TKA ++               A + L+  
Sbjct: 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS----EQAKIGLAQLKLQME 476

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           + D+ IE    S  +     + L      +    K ++ 
Sbjct: 477 KIDEAIELFEDSAILARTMDEKLQAT--TFAEAAKIQKR 513

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                  GD E  ++F TKAL++      + +  L  RA+           + D S  L 
Sbjct: 66  SACYISTGDLEKVIEFTTKALEI----KPDHSKALLRRASANESLGNFTDAMFDLSV-LS 120

Query: 76  IVPD----DPKALFRRCQAYEAIGKFEEA 100
           +  D      + +  R    +A+    E 
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNEN 149

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 79.5 bits (197), Expect = 4e-17
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
              N     + +  G   F + D+  A+  YT+ +K   E+    A    NRAA   K  
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLM 187

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
              + I DC+K++E  P+  +A  R+  A  A+ ++  A
Sbjct: 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 75.7 bits (187), Expect = 8e-16
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           +K K  GN  +K   ++ A++ Y KA      E H+  T L NRAA   ++ + +  I  
Sbjct: 6   DKEKAEGNKFYKARQFDEAIEHYNKAW-----ELHKDITYLNNRAAAEYEKGEYETAIST 60

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
            + ++E   +         +++  IG       D
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 16/117 (13%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
                   ++     +   K  + E  L        V  E+    A   +     Y  ++
Sbjct: 101 YYQKSLTEHRT---ADILTKLRNAEKELKKAEAEAYVNPEK----AEEARLEGKEYFTKS 153

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
                ++  ++ ++  P+D +    R  A   +  F EA  D          NKAI+
Sbjct: 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC---------NKAIE 201

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 54.9 bits (133), Expect = 9e-09
 Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 17/117 (14%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +  ++   N       + +++G+YETA+     A+    E+  E     K  +  + +  
Sbjct: 34  LHKDITYLNNR---AAAEYEKGEYETAISTLNDAV----EQGREMRADYKVISKSFARIG 86

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
                + D  K++E          R       +   E+    A              
Sbjct: 87  NAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKKA---------EAEAY 133

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 9/83 (10%), Positives = 23/83 (27%), Gaps = 4/83 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
             +  K   +  A+    KA++   + +  RA     +A   +   +    +E    +  
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEK--DPNFVRA--YIRKATAQIAVKEYASALETLDAART 235

Query: 76  IVPDDPKALFRRCQAYEAIGKFE 98
              +       R          +
Sbjct: 236 KDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 10/72 (13%)

Query: 47  ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKH 106
           A   K     + K  Q D+ IE  +K+ E+   D   L  R  A    G++E A +    
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTL-- 61

Query: 107 IHRVEPTNKAIQ 118
                  N A++
Sbjct: 62  -------NDAVE 66

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 15/121 (12%), Positives = 44/121 (36%), Gaps = 7/121 (5%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
           +   + +   +L   G + ++ G ++ A   +           H  A       A     
Sbjct: 10  LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC----MLDHYDARYFLGLGACRQSL 65

Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA---YTDAKHIHRVEPTNKAI 117
              ++ ++  S    +  ++P+  F   + +  +G  + A   +  A+ +   +P ++A+
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125

Query: 118 Q 118
            
Sbjct: 126 A 126

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 4/121 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +  + +       + +G  E A  F+                 +   AA+Y  + Q  + 
Sbjct: 34  DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFYNVDYIMGLAAIYQIKEQFQQA 89

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126
            +  + +  +  +D   +F   Q    +    +A    + + +     K      S L A
Sbjct: 90  ADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDA 149

Query: 127 I 127
           I
Sbjct: 150 I 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 6/90 (6%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
              +  + + +         +  ++ A D Y  A      ++        +     L+  
Sbjct: 63  CIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVF--HTGQCQLRLK 118

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAY 91
              K  E     ++   D+   L  + Q+Y
Sbjct: 119 APLKAKECFELVIQHSNDEK--LKIKAQSY 146

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 7/100 (7%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
               D+      G    K+G    A+  Y  A+                  + +  +   
Sbjct: 72  AKSADFEYY---GKILMKKGQDSLAIQQYQAAVDRDTTR----LDMYGQIGSYFYNKGNF 124

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
              I+   K +     DPK  +   QAY    ++ +A + 
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
             ++ Y ++   G+  + +G++  A+ +  K ++ T  +              Y    + 
Sbjct: 106 TRLDMYGQI---GSYFYNKGNFPLAIQYMEKQIRPTTTD----PKVFYELGQAYYYNKEY 158

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG---KFEEA 100
            K      K LE+ P+       R +A  A     K   A
Sbjct: 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLA 198

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 10/99 (10%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
           N +   +     +  FK  +Y  A++ + K         +        RA  Y +  + D
Sbjct: 2   NDDVEFRY---ADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYELAKYD 54

Query: 65  KVIEDCS---KSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
              +D       +              +     G+   A
Sbjct: 55  LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLA 93

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 18/123 (14%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
            +   + +L   G + +   +Y  A   + K L++              RA     Q+ +
Sbjct: 140 TDPKVFYEL---GQAYYYNKEYVKADSSFVKVLEL----KPNIYIGYLWRARANAAQDPD 192

Query: 64  DKV---IEDCSKSLEIVPDDPK--------ALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
            K         K +E+              A       Y       +A    K+I  ++P
Sbjct: 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252

Query: 113 TNK 115
           TNK
Sbjct: 253 TNK 255

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 4/80 (5%)

Query: 21  KQGDYETALDFYTKALKVTAEESHER----ATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
                  A  +Y K ++V A    +         +  A  Y       K        L +
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 77  VPDDPKALFRRCQAYEAIGK 96
            P + KA+       E    
Sbjct: 251 DPTNKKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 52  NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
             A    K N   + IE  +K      + P    RR   Y  + K++ A  D       E
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI------E 61

Query: 112 PTNKAIQ 118
                + 
Sbjct: 62  TYFSKVN 68

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 8   DYNKLKESGNSAFKQGDYETALDFYTKALKV------------TAEESHERATCLKNRAA 55
             +++ +  ++A + G    A+ ++ + + +              + S   +      A 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 56  VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
            Y K    DK      + L+  P++   L    +     G+ ++A    + I ++E  N
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRA-AVYLKQNQ 62
           NN++              +G  + AL  Y K L++ A+                YL   Q
Sbjct: 86  NNVDCLEAC---AEMQVCRGQEKDALRMYEKILQLEAD----NLAANIFLGNYYYLTAEQ 138

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
             K +E   K L        A +R   +     ++E+A    + +    P+ +A
Sbjct: 139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
           +  N+        E   +  K  +Y+ A  FY + L    +++     CL+  A + + +
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL----QKAPNNVDCLEACAEMQVCR 101

Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            Q    +    K L++  D+  A       Y    + E+ 
Sbjct: 102 GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
                ++   L    +  F+    + +  F T A+K     +   A    N   VY ++ 
Sbjct: 26  WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERG 81

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           Q  + IE    +L + PD          A  A G  E A
Sbjct: 82  QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            +  ++ GD+E A     +  +   +        L   ++++ +  + D+     + +++
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDN----TGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
             P   +A       Y+  G+ +EA    +H  R++P  
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           Y  L    N+  ++G    A D Y  AL++        A  L N A +  +Q   ++ + 
Sbjct: 274 YCNL---ANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVR 326

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
              K+LE+ P+   A        +  GK +EA
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           Y  L   GN   +   ++ A+  Y +AL ++       A    N A VY +Q   D  I+
Sbjct: 206 YINL---GNVLKEARIFDRAVAAYLRALSLSPNH----AVVHGNLACVYYEQGLIDLAID 258

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
              +++E+ P  P A      A +  G   EA
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.1 bits (144), Expect = 8e-10
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           GN   ++G  + A++ Y  AL++      +      N AA  +     +  ++    +L+
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRL----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
             PD            +A+G+ EEA
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEA 154

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 16/110 (14%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
            + L   GN     G  E A   Y KA++         A    N   V+  Q +    I 
Sbjct: 138 RSDL---GNLLKALGRLEEAKACYLKAIETQPNF----AVAWSNLGCVFNAQGEIWLAIH 190

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
              K++ + P+   A        +    F+ A         V    +A+ 
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRA---------VAAYLRALS 231

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
            N L    N   +QG+ E A+  Y KAL+V  E     A    N A+V  +Q +  + + 
Sbjct: 308 LNNL---ANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALM 360

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIG 95
              +++ I P    A        + + 
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 5/49 (10%), Positives = 13/49 (26%)

Query: 52  NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
             A    +    +     C +     PD+   L      +    + + +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS 52

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           G  AF + D +TA++ +  AL +   T       A    N    Y K    D  I+  ++
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            L +  +D          Y        A
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLA 569

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.4 bits (136), Expect = 9e-09
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           I+      + L    ++ F +  +   L   TK L+                 A   +  
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE----IDPYNLDVYPLHLASLHESG 353

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           + +K+    +  ++  P+           Y  + K  EA
Sbjct: 354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           +  L   G++  K   Y+ A+D   + L ++  +    A      A VYL +      I 
Sbjct: 519 WANL---GHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAIT 571

Query: 69  DCSKSLEIVPDDPKALFRRCQAYE 92
              +SL I P++  A     +A E
Sbjct: 572 HLHESLAISPNEIMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            +S   +G+++ A+  YT A ++   +              +++        E    S  
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARL--FQGTHLP--YLFLGMQHMQLGNILLANEYLQSSYA 469

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           +   DP  L             + A
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTA 494

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 4/113 (3%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
              +      L     +     D     + Y  ++        + +  L  +A     ++
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI----NGLEKSSDLLLCKADTLFVRS 319

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +   V+   +K LEI P +         +    G+  + Y  +  +    P  
Sbjct: 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 33/140 (23%)

Query: 16  GNSAFKQGDYETALDFYTKALKV-----------------TAEESHERATCLK------- 51
           G       +++ A + Y +AL V                 TA+E  +    L        
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266

Query: 52  ---------NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYT 102
                                 +  ED   S+  +      L  +        +F +   
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326

Query: 103 DAKHIHRVEPTNKAIQPVLS 122
               I  ++P N  + P+  
Sbjct: 327 ITTKILEIDPYNLDVYPLHL 346

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 8/85 (9%), Positives = 24/85 (28%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G           A  +++K+  +      +        A  +  + ++D+ I   + +  
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTM----DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           +              +  +G    A
Sbjct: 436 LFQGTHLPYLFLGMQHMQLGNILLA 460

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
            N++ Y        S  + G+           +    +   E+A         YL  N+ 
Sbjct: 337 YNLDVYPLH---LASLHESGEKNKLYLISNDLV----DRHPEKAVTWLAVGIYYLCVNKI 389

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            +     SKS  + P    A      ++   G+ ++A
Sbjct: 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 11/92 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G    + G+   A ++   +  +   +       L     V   ++     I     +L 
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYD----PLLLNELGVVAFNKSDMQTAINHFQNALL 503

Query: 76  IV-------PDDPKALFRRCQAYEAIGKFEEA 100
           +V                   AY  +  ++ A
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                     +  L    +A  +T     E+   + +            +++    ++  
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLT----PEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + P+   A+       +A+   +         H + P  
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 9/108 (8%), Positives = 27/108 (25%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +             +  L    +A  +T E    +   + +             +
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE----QVVAIASHDGGKQALETVQAL 159

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + P+   A+       +A+   +         H + P  
Sbjct: 160 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G         +  L    +A  +T ++       + +            +++    ++  
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASNGGGKQALETVQRLLPVLCQAHG 270

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + P    A+       +A+   +         H + P  
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 9/99 (9%), Positives = 28/99 (28%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G         +  L    +A  +T ++       + +            +++    ++  
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASHDGGKQALETVQRLLPVLCQAHG 372

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + P+   A+       +A+   +         H + P  
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 8/111 (7%), Positives = 27/111 (24%), Gaps = 4/111 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +  +G         +  L    +A  +T E+       + +            ++
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ----VVAIASHDGGKQALETVQRL 431

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
           +    ++  + P    A+        A+       +           +  +
Sbjct: 432 LPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 9/99 (9%), Positives = 28/99 (28%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G         +  L    +A  +T ++       + + +          +++    ++  
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASNSGGKQALETVQRLLPVLCQAHG 304

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + P    A+       +A+   +         H + P  
Sbjct: 305 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 9/108 (8%), Positives = 29/108 (26%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +  +G         +  L    +A  +T +    +   + +            ++
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ----QVVAIASNGGGKQALETVQRL 227

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + P    A+       +A+   +         H + P  
Sbjct: 228 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 7e-10
 Identities = 8/108 (7%), Positives = 28/108 (25%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +  +          +  L    +A  +T ++       + +            ++
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASNGGGKQALETVQRL 329

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + P    A+       +A+   +         H + P  
Sbjct: 330 LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 12/110 (10%), Positives = 31/110 (28%), Gaps = 8/110 (7%)

Query: 7   NDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
               K+ + G     +    +  AL      L +T E+       + +            
Sbjct: 36  GQLLKIAKRGGVTAVEAVHAWRNAL--TGAPLNLTPEQ----VVAIASHDGGKQALETVQ 89

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +++    ++  + P    A+       +A+   +         H + P  
Sbjct: 90  RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 139

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
            N L   G+   K   Y  ALD++ +AL +  +     A+       ++      +  ++
Sbjct: 239 LNNL---GHVCRKLKKYAEALDYHRQALVLIPQN----ASTYSAIGYIHSLMGNFENAVD 291

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA 104
               +L +  DD  ++       E      EAY  A
Sbjct: 292 YFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 61.5 bits (150), Expect = 9e-11
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER-----ATCLKNRAAVYLKQNQNDKVIEDC 70
           G  AF+ G+++TA  ++  AL+      +E         L N   V  K  +  + ++  
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            ++L ++P +          +  +G FE A
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENA 289

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G+S   + +++ A+  Y  A ++     H     +      Y   N +       S++L 
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKG-CHL---PMLYIGLEYGLTNNSKLAERFFSQALS 187

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           I P+DP  +          G+++ A
Sbjct: 188 IAPEDPFVMHEVGVVAFQNGEWKTA 212

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +D    + + +       +   D++      +  +    E+    A+CL       ++ N
Sbjct: 15  VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM----EKDPFHASCLPVHIGTLVELN 70

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEA 100
           + +++     K +++ P +P + F     Y  +G   E A
Sbjct: 71  KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA 110

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 8/128 (6%), Positives = 29/128 (22%), Gaps = 34/128 (26%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV-----------------------TA 40
            + +          +  +            K + +                        A
Sbjct: 54  FHASCLPVH---IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA 110

Query: 41  EESHERATCLK--------NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYE 92
                +AT L+             +  ++++D+ +     + +++      +      Y 
Sbjct: 111 RRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170

Query: 93  AIGKFEEA 100
                + A
Sbjct: 171 LTNNSKLA 178

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G  A  + D++ ALD ++       ++ H R     N   +Y       +  +  ++S+ 
Sbjct: 13  GVLAADKKDWKGALDAFSAV-----QDPHSRI--CFNIGCMYTILKNMTEAEKAFTRSIN 65

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
                  A F+R   Y    K++ A  D K        N+ I
Sbjct: 66  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 13/122 (10%), Positives = 39/122 (31%), Gaps = 28/122 (22%)

Query: 6   MNDYNKLKES--------GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY 57
           ++ ++ +++         G       +   A   +T+++          A     R  +Y
Sbjct: 26  LDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLY 81

Query: 58  LKQNQNDKVIEDCSKSLEIVPDDP----------------KALFRRCQAYEAIGKFEEAY 101
            +  + D  I+D  ++L  +  +                 + L+     Y    ++++A 
Sbjct: 82  YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141

Query: 102 TD 103
             
Sbjct: 142 EQ 143

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 14/93 (15%)

Query: 16  GNSAFKQGDYETALDFYTKALKV----TAEESHERATCLK--------NRAAVYLKQNQN 63
           G   ++   Y+ A+    +AL         +        K        N A +Y K+ + 
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK 96
            K  E  + +  +  +   +   +  A E + K
Sbjct: 138 KKAEEQLALATSMKSEPRHSKIDK--AMECVWK 168

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 58.2 bits (142), Expect = 6e-11
 Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
           M+D N  +Y      G   +  G+Y  ++D + KA+++  EE    +     +       
Sbjct: 1   MVDQNPEEYYLE---GVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNL 53

Query: 61  NQNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEA 100
            + ++ ++  +  + ++ D  +      +  A   I   E  
Sbjct: 54  ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVE 95

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
             K    G + +    YE A+D Y   + V  +E ++       +A         +   E
Sbjct: 44  LMK----GKALYNLERYEEAVDCYNYVINVIEDEYNKDV--WAAKADALRYIEGKEVEAE 97

Query: 69  DCSKSLEIVPDD 80
                 ++    
Sbjct: 98  IAEARAKLEHHH 109

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 8/134 (5%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +   +L     + ++ G YE A   +           H  +       A      Q D  
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVFQALC----VLDHYDSRFFLGLGACRQAMGQYDLA 74

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR--- 123
           I   S    +   +P+  F   +     G+  EA +       +         + +R   
Sbjct: 75  IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134

Query: 124 -LFAIVTKRMQENE 136
            L AI  K+  ++E
Sbjct: 135 MLEAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 6/104 (5%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
              +  D       G      G Y+ A+  Y+    +   E         + A   L+  
Sbjct: 48  CVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE----PRFPFHAAECLLQXG 103

Query: 62  QNDKVIEDCSKSLEIVPDDPKA--LFRRCQAYEAIGKFEEAYTD 103
           +  +       + E++ + P+   L  R  +     K ++    
Sbjct: 104 ELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 7/92 (7%), Positives = 27/92 (29%), Gaps = 4/92 (4%)

Query: 23  GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82
           G   +         +++++   +    L + A    +    +           +   D +
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQ----LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR 56

Query: 83  ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
                    +A+G+++ A     +   ++   
Sbjct: 57  FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 22/97 (22%), Positives = 30/97 (30%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
             + K +            E  L    + L   A    ERA  L  R  +Y         
Sbjct: 3   TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA 62

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
             D S++L I PD P+            G F+ AY  
Sbjct: 63  RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G      G    A + +++AL +      +             +    D   E     LE
Sbjct: 50  GVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTD 103
           + P    A   R  A    G+ + A  D
Sbjct: 106 LDPTYNYAHLNRGIALYYGGRDKLAQDD 133

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 9/103 (8%), Positives = 26/103 (25%), Gaps = 4/103 (3%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           D     +N ++    +  +Q   E      T    +    +   +         YL    
Sbjct: 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGD 230

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAK 105
            D        ++     +             +G+ ++   ++ 
Sbjct: 231 LDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           +N L   G    + G+++ A + +   L++             NR        ++    +
Sbjct: 80  FNYL---GIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQD 132

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107
           D     +  P+DP        A + + + +      +H 
Sbjct: 133 DLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.0 bits (145), Expect = 6e-10
 Identities = 7/108 (6%), Positives = 27/108 (25%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +             +  L    +A  +T     ++   + +            ++
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASNGGGKQALETVQRL 686

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  +  +   A+       +A+   +         H + P  
Sbjct: 687 LPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.7 bits (144), Expect = 9e-10
 Identities = 8/108 (7%), Positives = 27/108 (25%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +             +  L    +A  +      ++   + +            ++
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLP----PDQVVAIASNIGGKQALETVQRL 279

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + PD   A+       +A+   +         H + P  
Sbjct: 280 LPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 9/108 (8%), Positives = 28/108 (25%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +  +          +  L    +A  +T      +   + +            ++
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLT----PAQVVAIASHDGGKQALETMQRL 245

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + PD   A+       +A+   +         H + P  
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 4e-09
 Identities = 10/108 (9%), Positives = 30/108 (27%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +    +   G         +  L    +A  +T     ++   + +            ++
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASHDGGKQALETVQRL 347

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + PD   A+       +A+   +         H + P  
Sbjct: 348 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 6e-09
 Identities = 8/99 (8%), Positives = 26/99 (26%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G         +  L    +A  +T     ++   + +            +++    ++  
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASNGGGKQALETVQRLLPVLCQAHG 593

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +      A+       +A+   +         H + P  
Sbjct: 594 LTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 7e-09
 Identities = 7/99 (7%), Positives = 24/99 (24%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                     +  L    +A       +  +   + +            +++    ++  
Sbjct: 606 IGGKQALETVQRLLPVLCQAH----GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG 661

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + PD   A+       +A+   +         H +    
Sbjct: 662 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 8e-09
 Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +    +  +G         +  L    +A  +T     E+   + +            ++
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLT----QEQVVAIASNNGGKQALETVQRL 720

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + PD   A+       +A+   +         H + P  
Sbjct: 721 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ 768

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 4e-08
 Identities = 9/108 (8%), Positives = 29/108 (26%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +    +  +G         +  L    +A  +T      +   + +            ++
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLT----QVQVVAIASNIGGKQALETVQRL 618

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + P    A+       +A+   +         H + P  
Sbjct: 619 LPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 9/108 (8%), Positives = 29/108 (26%), Gaps = 5/108 (4%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +    +             +  L    +A  +T ++       + +            ++
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ----VVAIASNGGGKQALETVQRL 381

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + PD   A+       +A+   +         H + P  
Sbjct: 382 LPVLCQAHGLTPDQVVAIASN-GGKQALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                     +  L    +A  +T     ++   + +            +++    ++  
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLT----PDQVVAIASNIGGKQALATVQRLLPVLCQAHG 525

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + PD   A+       +A+   +         H + P  
Sbjct: 526 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 564

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 9e-07
 Identities = 8/110 (7%), Positives = 29/110 (26%), Gaps = 4/110 (3%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
             +    +  +          +  L    +A  +T ++       + +            
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ----VVAIASNGGGKQALETVQ 548

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +++    ++  + PD   A+       +A+   +         H +    
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 10/110 (9%), Positives = 31/110 (28%), Gaps = 5/110 (4%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
             +    +  +G         +  L    +A  +T ++       + +            
Sbjct: 358 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ----VVAIASNGGKQ-ALETVQ 412

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +++    ++  + PD   A+       +A+   +         H + P  
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 8/93 (8%), Positives = 27/93 (29%), Gaps = 4/93 (4%)

Query: 22  QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
               +  L    +A  +T     ++   + +            +++    ++  + P   
Sbjct: 408 LETVQRLLPVLCQAHGLT----PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQV 463

Query: 82  KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
            A+       +A+   ++        H + P  
Sbjct: 464 VAIASHDGGKQALETVQQLLPVLCQAHGLTPDQ 496

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.8 bits (144), Expect = 7e-10
 Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            +   +QG  + AL  Y +A++++       A    N      +       ++  +++++
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPT----FADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
           I P    A       ++  G   EA    +   +++P
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            N   +QG+ E A+  Y KAL+V      E A    N A+V  +Q +  + +    +++ 
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           I P    A        + +   + A        ++ P  
Sbjct: 72  ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           GN+  +  D + AL  YT+A+++        A    N A+++       + I     +L+
Sbjct: 84  GNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139

Query: 76  IVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHI---HRVEPTNKAIQPVLSRLF 125
           + PD P A        + +  +   +E       I      +    ++ P  S L+
Sbjct: 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLY 195

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 59.5 bits (144), Expect = 9e-10
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            ++    GD         + L +           +     V   Q ++ +      ++ +
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPG----HPEAVARLGRVRWTQQRHAEAAVLLQQASD 85

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
             P+ P        A E  G+ E A       H++ P  
Sbjct: 86  AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 4/93 (4%)

Query: 22  QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
             D    L     A++   ++           A   L             + L + P  P
Sbjct: 2   TADGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP 57

Query: 82  KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +A+ R  +      +  EA    +      P +
Sbjct: 58  EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 11/105 (10%), Positives = 30/105 (28%), Gaps = 5/105 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G   + Q  +  A     +A     E                    Q +      +++ +
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPE----HPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI-HRVEPTNKAIQP 119
           ++P++P    +       +  +      +  +   V     A++P
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G    K GD    + F+  A++V  E+    +         Y   +   K +E     L 
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75

Query: 76  I---VPDDP---KALFRRCQAYEAIGKFEEA 100
           +   + D     KA        + +G F+EA
Sbjct: 76  LARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDKVIEDCSK 72
           GN+    G++ETA ++Y K L + A +  +R   A    +    Y      +K I+   K
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292

Query: 73  SLEI------VPDDPKALFRRCQAYEAIGKFEEA 100
            L I         + +A +    AY A+G  ++A
Sbjct: 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
           +  L   GN+ +  G++  A+  + + L + A+E  ++        N    Y+   + + 
Sbjct: 190 FGNL---GNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAERRAYSNLGNAYIFLGEFET 245

Query: 66  VIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA 100
             E   K+L +   + D     ++ +     Y  +  +E+A
Sbjct: 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKV 66
           Y++L   GN+ F   DY  AL+++   L +  T  +    A    N           D+ 
Sbjct: 50  YSQL---GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106

Query: 67  IEDCSKSLEI 76
           I  C + L+I
Sbjct: 107 IVCCQRHLDI 116

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+     DYE A+D++ K L + A+E ++R        +    Y     +D+
Sbjct: 270 CYSL---GNTYTLLQDYEKAIDYHLKHLAI-AQELNDRIGEGRACWSLGNAYTALGNHDQ 325

Query: 66  VIEDCSKSLEI 76
            +    K LEI
Sbjct: 326 AMHFAEKHLEI 336

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 13/118 (11%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQ 60
            +                +   + A+DFY + L +      +R        N    +   
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL-VTALGDRAAQGRAFGNLGNTHYLL 200

Query: 61  NQNDKVIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
                 +    + L I     D     +A      AY  +G+FE A   Y     + R
Sbjct: 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 14/95 (14%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+    G+++ A+    + L + + E +++   A  L N   VY    +   
Sbjct: 90  SGNL---GNTLKVLGNFDEAIVCCQRHLDI-SRELNDKVGEARALYNLGNVY--HAKGKS 143

Query: 66  VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
                 + +   P++ +   +      A+  +EE 
Sbjct: 144 FGCPGPQDVGEFPEEVRDALQ-----AAVDFYEEN 173

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 22  QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
            G    A+ +Y KA+    +   + A C     + +    +  K     +  ++  P+  
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61

Query: 82  KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
                       +G++E+       I      ++ IQ
Sbjct: 62  ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 3   DNNMNDYNKLKES-GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
               +  +           + GDYE A + +TKA+    EE+ E A    N A +    N
Sbjct: 16  PRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAI----EENKEDAIPYINFANLLSSVN 71

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           + ++ +    K+LE+      A +     Y     ++EA
Sbjct: 72  ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 55.2 bits (134), Expect = 6e-09
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKV 66
           Y       N      + E AL FY KAL++  +A  ++           VY+ +    + 
Sbjct: 60  YINF---ANLLSSVNELERALAFYDKALELDSSAATAY------YGAGNVYVVKEMYKEA 110

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            +   K+L    ++    +        + + + A
Sbjct: 111 KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA 144

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.8 bits (133), Expect = 8e-09
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 8/92 (8%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           Y      G    K    + AL +  +A+++    +                +   D+ + 
Sbjct: 129 YML----GTVLVKLEQPKLALPYLQRAVEL----NENDTEARFQFGMCLANEGMLDEALS 180

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
             +   E  P    A +     Y      E+A
Sbjct: 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 12/106 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           G      G+++ A   + +  ++     E+    +      A V L         ++  K
Sbjct: 73  GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132

Query: 73  SLEI---VPDDP---KALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
           SL       D      A        +      EA   +  A+ I  
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 13/106 (12%), Positives = 24/106 (22%), Gaps = 12/106 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
           G        ++ A   +    +   +          L     V       D       + 
Sbjct: 33  GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92

Query: 74  LEI---VPDDPKALFRRC----QAYEAIGKFEEA---YTDAKHIHR 109
            E+   +P+DP A               G    A   Y  +    +
Sbjct: 93  RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQ 62
           G+ A ++ +   A   + +A  + AE  +S      +     +    + 
Sbjct: 154 GDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G    K GD    + F+  A++V  E+    +         Y   +   K +E     L 
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71

Query: 76  I---VPDDP---KALFRRCQAYEAIGKFEEA 100
           +   + D     KA        + +G F+EA
Sbjct: 72  LARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 52.6 bits (127), Expect = 8e-08
 Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 13/101 (12%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
           +  L   GN+ +  G++  A+  + + L + A+E  ++        N    Y+   + + 
Sbjct: 186 FGNL---GNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAERRAYSNLGNAYIFLGEFET 241

Query: 66  VIEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEA 100
             E   K+L +         + ++ +     Y  +  +E+A
Sbjct: 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKV 66
           Y++L   GN+ F   DY  AL+++   L +  T  +    A    N           D+ 
Sbjct: 46  YSQL---GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102

Query: 67  IEDCSKSLEI 76
           I  C + L+I
Sbjct: 103 IVCCQRHLDI 112

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+     DYE A+D++ K L + A+E  +R        +    Y     +D+
Sbjct: 266 CYSL---GNTYTLLQDYEKAIDYHLKHLAI-AQELKDRIGEGRACWSLGNAYTALGNHDQ 321

Query: 66  VIEDCSKSLEI 76
            +    K LEI
Sbjct: 322 AMHFAEKHLEI 332

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 13/118 (11%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQ 60
            +                +   + A+D Y + L +      +R        N    +   
Sbjct: 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL-VTALGDRAAQGRAFGNLGNTHYLL 196

Query: 61  NQNDKVIEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
                 +    + L I         + +A      AY  +G+FE A   Y     + R
Sbjct: 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 54.0 bits (131), Expect = 7e-09
 Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 16/116 (13%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           D     Y      G S  K G Y  A+    +                 +    Y+K   
Sbjct: 5   DIRQVYYRDK---GISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKTGA 57

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
            D+  E   +SL   PD+ K        Y  + K++ A         V    K  +
Sbjct: 58  VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLA---------VPLLIKVAE 104

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 51.3 bits (124), Expect = 6e-08
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 13/103 (12%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G +  +   Y+ A+    K  +                        + D+ I+    +L 
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALG 138

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           + P++ K       +YE +G+ EEA         +    KA +
Sbjct: 139 LRPNEGKVHRAIAFSYEQMGRHEEA---------LPHFKKANE 172

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 53.0 bits (126), Expect = 1e-08
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 19/146 (13%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE--------RATCLKNRAAVYLKQN 61
                        G+Y+ A     +A++++     E         A C    A       
Sbjct: 12  YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR 71

Query: 62  QNDKVIEDCSKSL-------EIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110
             D+ +    K+L       E+  D+      A++ R  A + +G+  EA  + K +  +
Sbjct: 72  SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131

Query: 111 EPTNKAIQPVLSRLFAIVTKRMQENE 136
               K   P   R+  +   R+ +  
Sbjct: 132 IEERKGETPGKERMMEVAIDRIAQLG 157

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 31/128 (24%)

Query: 4   NNM-NDYNKL-KESGNSAFKQGDYETALDFYTKALKV----------------------T 39
             +   Y  L +++ +    +G  E AL     A +V                       
Sbjct: 77  MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136

Query: 40  AEESHERATCLK-------NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYE 92
           AE S ++A  L+         A +YL   + D+ +   +K+LE  P D     R   A  
Sbjct: 137 AEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196

Query: 93  AIGKFEEA 100
             GK EEA
Sbjct: 197 LKGKAEEA 204

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G   +  G Y+ AL  + +ALK   ++       L   A   LK    +  +E+    + 
Sbjct: 12  GVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVA 67

Query: 76  IVPDDPKALFRRCQAYEAI-----------GKFEEA 100
             P          +AY A+           G  E+A
Sbjct: 68  RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 11/110 (10%), Positives = 28/110 (25%), Gaps = 16/110 (14%)

Query: 16  GNSAFKQGDYETALDFYTKALKVT---AEESHERATCLK----NRAAVYLKQNQNDKVIE 68
             +  K G    AL+     +  T          +                +   ++ + 
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
               +  + P       +R   Y  +G+ ++A              +A+ 
Sbjct: 106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKA---------EASLKQALA 146

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 9/67 (13%)

Query: 52  NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
                     + D  +    ++L+  P DP+AL+   +    +G    A         +E
Sbjct: 10  RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA---------LE 60

Query: 112 PTNKAIQ 118
                + 
Sbjct: 61  NGKTLVA 67

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
           Y+ L   GN+    G++ETA ++Y K L + A +  +R   A    +    Y      +K
Sbjct: 52  YSNL---GNAYIFLGEFETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEK 107

Query: 66  VIEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEA 100
            I+   K L I         + +A +    AY A+G  ++A
Sbjct: 108 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 9  YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
          +  L   GN+ +  G++  A+  + + L + A+E  ++        N    Y+   + + 
Sbjct: 12 FGNL---GNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAERIAYSNLGNAYIFLGEFET 67

Query: 66 VIEDCSKSLEI 76
            E   K+L +
Sbjct: 68 ASEYYKKTLLL 78

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+     DYE A+D++ K L + A+E  +R        +    Y     +D+
Sbjct: 92  CYSL---GNTYTLLQDYEKAIDYHLKHLAI-AQELKDRIGEGRACWSLGNAYTALGNHDQ 147

Query: 66  VIEDCSKSLEI 76
            +    K LEI
Sbjct: 148 AMHFAEKHLEI 158

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G   ++Q  YE A     +A + T      R    +N   V L+  +  +  E   KSL 
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRV--FENLGLVSLQMKKPAQAKEYFEKSLR 169

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +  + P              ++  A        +    N
Sbjct: 170 LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 10/100 (10%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G  + +      A +++ K+L++    +  + +     A +  K+ +     +      +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRL----NRNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
               + ++L    +  +     + A +    + R+ P + 
Sbjct: 204 GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKV 66
           Y +L   G    ++G+ E A     KAL++     ++H         A V+  + +    
Sbjct: 40  YIQL---GLGYLQRGNTEQAKVPLRKALEIDPSSADAHA------ALAVVFQTEMEPKLA 90

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            E+  K+L     + + L           ++EEA
Sbjct: 91  DEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 4/84 (4%)

Query: 17  NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
           +S               K  K   E               YL++   ++      K+LEI
Sbjct: 11  SSGLVPRGSHMGDQNPLKTDKGRDEARDAYI----QLGLGYLQRGNTEQAKVPLRKALEI 66

Query: 77  VPDDPKALFRRCQAYEAIGKFEEA 100
            P    A       ++   + + A
Sbjct: 67  DPSSADAHAALAVVFQTEMEPKLA 90

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
            +N   D+    E G    K+GD    + F   A+    +     A   +       +  
Sbjct: 58  TENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEA--WQFLGITQAENE 113

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
                I    + LE+ P++ KAL     +Y      ++A   
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 12/111 (10%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           +  L   G +  +  + + A+    + L++           L   A  Y   +      E
Sbjct: 102 WQFL---GITQAENENEQAAIVALQRCLEL----QPNNLKALMALAVSYTNTSHQQDACE 154

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQ 118
                ++  P     +  +  +     +  ++  D+  +  V+    +A  
Sbjct: 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G      G++  A+D +  AL V  E+     +      A     +++++ +E  +++LE
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRALE 275

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           I P   ++ +    +   +G + EA
Sbjct: 276 IQPGFIRSRYNLGISCINLGAYREA 300

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 2/97 (2%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
           N        +    S       E   + Y +A     +              ++    + 
Sbjct: 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD--MIDPDLQTGLGVLFHLSGEF 229

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           ++ I+  + +L + P+D     R         + EEA
Sbjct: 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 1/99 (1%)

Query: 3   DNNMNDYNKL-KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           D    ++ ++ + +  S  ++   +  +    K      E   +            LK+ 
Sbjct: 20  DKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEG 79

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
                I     ++   P D +A              + A
Sbjct: 80  DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAA 118

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 16/113 (14%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+ +  GD++ A++ + + L++ A E  +R        N    ++   Q + 
Sbjct: 226 CGNL---GNTYYLLGDFQAAIEHHQERLRI-AREFGDRAAERRANSNLGNSHIFLGQFED 281

Query: 66  VIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
             E   ++L +   + +     ++ +     Y  + +F  A   +     I +
Sbjct: 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G      GD    + F+  A++   E+    +         Y      +K ++     L 
Sbjct: 55  GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114

Query: 76  I---VPDDP---KALFRRCQAYEAIGKFEEA 100
           +   + D     K+        + +G+F+EA
Sbjct: 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA 145

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
           Y++L   GN+ F  GDY  A+ ++   L + A+  ++R   A    N         + D+
Sbjct: 89  YSQL---GNAYFYLGDYNKAMQYHKHDLTL-AKSMNDRLGEAKSSGNLGNTLKVMGRFDE 144

Query: 66  VIEDCSKSLEI 76
               C + L +
Sbjct: 145 AAICCERHLTL 155

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 11/71 (15%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+     ++ TA++++ + L + A+E  +R   A    +    +     +++
Sbjct: 306 CYSL---GNTYTLLHEFNTAIEYHNRHLAI-AQELGDRIGEARACWSLGNAHSAIGGHER 361

Query: 66  VIEDCSKSLEI 76
            ++   + L++
Sbjct: 362 ALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 9/104 (8%), Positives = 28/104 (26%), Gaps = 9/104 (8%)

Query: 15  SGNSAFKQGDYETALDFYTKALKVTAEESHERATC--LKNRAAVYLKQNQNDKVIEDCSK 72
              S+   G      + +    +  +      + C  L                +     
Sbjct: 14  ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73

Query: 73  SLEIVPDDPK----ALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
           +++   +D +       +   AY  +G + +A   +     + +
Sbjct: 74  AIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+    G ++ A     + L + A +  +R      L N   VY  + ++  
Sbjct: 129 SGNL---GNTLKVMGRFDEAAICCERHLTL-ARQLGDRLSEGRALYNLGNVYHAKGKHLG 184

Query: 66  VIEDCSKSLEIVPDDPKAL 84
                    ++     +A+
Sbjct: 185 QRNPGKFGDDVKEALTRAV 203

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 14/119 (11%)

Query: 4   NNMNDYNKLKESGNSAFK-QGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLK 59
           +    +   +  G      +     A++FY + LK+   +  +R        N    Y  
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL-MRDLGDRGAQGRACGNLGNTYYL 235

Query: 60  QNQNDKVIEDCSKSLEIV------PDDPKALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
                  IE   + L I         + +A      ++  +G+FE+A   Y     +  
Sbjct: 236 LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 51.6 bits (125), Expect = 2e-08
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 33/122 (27%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKV----------------------TAEESHER 46
           +  L   GN+ +KQGDY+ A+++Y KAL++                       A E +++
Sbjct: 4   WYNL---GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 47  ATCLK--------NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE 98
           A  L         N    Y KQ   D+ IE   K+LE+ P   +A +    AY   G ++
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120

Query: 99  EA 100
           EA
Sbjct: 121 EA 122

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.1 bits (90), Expect = 8e-04
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 34/101 (33%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKV----------------------TAEESHER 46
           YN     GN+ +KQGDY+ A+++Y KAL++                       A E +++
Sbjct: 39  YNL----GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94

Query: 47  ATCLK--------NRAAVYLKQNQNDKVIEDCSKSLEIVPD 79
           A  L         N    Y KQ   D+ IE   K+LE+ P 
Sbjct: 95  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           +N + D+ +  E G    ++GD   A+  +  A++   +  H  A   +       +  Q
Sbjct: 58  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEA--WQYLGTTQAENEQ 113

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
               I    + LE+ PD+  AL     ++       +A   
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI 154

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 2/85 (2%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
             S      +    + +  A+++                 ++    + DK ++  + +L 
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVRLDPT--SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           + P+D     +         + EEA
Sbjct: 246 VRPNDYLLWNKLGATLANGNQSEEA 270

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G      G+Y+ A+D +T AL V   +            A     NQ+++ +    ++LE
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGNQSEEAVAAYRRALE 279

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           + P   ++ +    +   +G   EA
Sbjct: 280 LQPGYIRSRYNLGISCINLGAHREA 304

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 18/103 (17%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           +NKL   G +       E A+  Y +AL++  +  + R+    N     +    + + +E
Sbjct: 254 WNKL---GATLANGNQSEEAVAAYRRALEL--QPGYIRS--RYNLGISCINLGAHREAVE 306

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAI-----------GKFEEA 100
              ++L +               E I           G+ +  
Sbjct: 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 13/98 (13%)

Query: 16  GNSAFKQGDYETALDFYTKALKV-----------TAEESHERATCLKNRAAVYLKQNQND 64
             S   +     A +     L+                        K      L  +   
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198

Query: 65  KVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEA 100
           +V E    ++ + P   DP         +   G++++A
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 11/100 (11%), Positives = 25/100 (25%), Gaps = 2/100 (2%)

Query: 3   DNNMNDYNKLKESGNSAFK-QGDY-ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
           D    +  ++ +    A     DY +     Y K  +   E                L++
Sbjct: 18  DKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE 77

Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
                 +     +++  P   +A            +   A
Sbjct: 78  GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
             +      Y+ AL     AL++  +  ++R  A  L N A  Y +   +   +E   K+
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 74  LEIVPDD-----PKALFRRCQAYEAIGKFEEA 100
            ++  +      PK LF         G+ ++A
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQN 61
             +  Y  L   G   F Q +Y  A+ +Y +A K      +  E+A      A  Y    
Sbjct: 96  TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQ-------AYEAIGKFEEA 100
           Q    +    ++L+I  + P    R  Q        Y+    +++A
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER-ATCLKNRAAVYLKQNQNDKVIEDCSKSL 74
            NS  + GD + A++ + KA KV+ E+  +     L   +    K  Q  K  +   + L
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288

Query: 75  EIVPD-DPKALFRRCQAYEAIGKFEEAYTDAK 105
           + +     K         +A+ K         
Sbjct: 289 DHITARSHKFYKELFLFLQAVYKETVDERKIH 320

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 4/102 (3%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
            +N    +    E G S  K  +   A   +    +       E A   ++      +  
Sbjct: 14  ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEA--WRSLGLTQAENE 69

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
           ++   I   + +  + P D         ++        A   
Sbjct: 70  KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 111

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 11/96 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALK-----------VTAEESHERATCLKNRAAVYLKQNQND 64
             S   + +   AL      L                +       +++    +   N+  
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           +       +LE+ P+D +        Y     ++ A
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 12/85 (14%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G       +Y++A     +A+++  ++    A       A     N+  + ++  +++L+
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDD----AQLWNKLGATLANGNRPQEALDAYNRALD 234

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           I P   + ++    +Y  + +++ A
Sbjct: 235 INPGYVRVMYNMAVSYSNMSQYDLA 259

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                   +Y         AL++   +    A    +   +Y   N  D    +  +++E
Sbjct: 145 DFFFAAPNEYRECRTLLHAALEMNPND----AQLHASLGVLYNLSNNYDSAAANLRRAVE 200

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           + PDD +   +         + +EA
Sbjct: 201 LRPDDAQLWNKLGATLANGNRPQEA 225

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.5 bits (122), Expect = 4e-08
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 29/111 (26%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLK--------NRAAVYLKQNQNDKVI 67
           GN+ +KQGDY+ A+++Y KAL+            L         N    Y KQ   D+ I
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALE------------LDPNNAEAWYNLGNAYYKQGDYDEAI 63

Query: 68  EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           E   K+LE+ P++ +A +    AY   G ++EA         +E   KA++
Sbjct: 64  EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA---------IEYYQKALE 105

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 53.3 bits (128), Expect = 5e-08
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
             +      YE A+  + KA  +   E   +     L N       Q+Q +  I    ++
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 74  LEI------VPDDPKALFRRCQAYEAIGKFEEA 100
           + +      +P  P+A F   Q +  +GK ++A
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQN 61
             + +Y      G     Q +Y +A+ F+ KA       ++  E+A      +  Y    
Sbjct: 98  TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK 157

Query: 62  QNDKVIEDCSKSLEIVP--DDPKALFRRCQ-----AYEAIGKFEEA 100
           Q    ++   ++ EI    +       +C       +  + ++E+A
Sbjct: 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDA 203

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 13/109 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
           G     Q  YE A+ ++ +A+ V  E +              ++ K  + DK  E  SK 
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290

Query: 74  LEIVPDDP-----------KALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
           +                  K+L+      EAI  F +          +E
Sbjct: 291 MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLE 339

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
               +K G  + A ++++K +  + +                     +++ I+     LE
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330

Query: 76  IV---PDDPKALFRRCQAYEAIGKFEEAY 101
                 D         + Y     F++A 
Sbjct: 331 SKMLYADLEDFAIDVAKYYHERKNFQKAS 359

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 49.4 bits (118), Expect = 9e-08
 Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 4/110 (3%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           +N    +    E G S  K  +   A   +    +   E    R    ++      +  +
Sbjct: 11  NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEK 66

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
           +   I   + +  + P D         ++        A    +     +P
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 2/96 (2%)

Query: 21  KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
           +      ++ ++ KAL      +   A    N+     KQ Q         +SL   P  
Sbjct: 89  RLNRPAESMAYFDKALADPTYPTPYIA--NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146

Query: 81  PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
           P A     +     G+  +A    K         +A
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
                +  DY  A      ALK   +   +         RA +Y     NDK  E   ++
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWL------VRAEIYQYLKVNDKAQESFRQA 68

Query: 74  LEIVPDDPKALFRRCQA-YEAIGKFEEA 100
           L I PD  +            + +  E+
Sbjct: 69  LSIKPDSAEINNNYGWFLCGRLNRPAES 96

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 10/61 (16%), Positives = 26/61 (42%)

Query: 40  AEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99
           AE++++ +      A  Y++     +       +L+  P +  A   R + Y+ +   ++
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60

Query: 100 A 100
           A
Sbjct: 61  A 61

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 14  ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
           ++      QGD E AL    + L+       E           Y K     K + +   +
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDE---AYYLMGNAYRKLGDWQKALNNYQSA 61

Query: 74  LEIVPDDPKALFRRCQAYEAIGKFEEAY 101
           +E+ PD P       QA + +      Y
Sbjct: 62  IELNPDSPAL-----QARKMVMDILNFY 84

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 17  NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
           N+       + AL  Y +A KV  + S        NRA ++  +    + +E  S++  +
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKASSN-PDLHLNRATLHKYEESYGEALEGFSQAAAL 287

Query: 77  VPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107
            P  P+   R  Q  E + +           
Sbjct: 288 DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 22  QGDYETALDFYTKALKVTAEESHERATCLKNRAAVY-LKQNQNDKVIEDCSKSLEIVPDD 80
           Q + E  L    + L      +   A  L  +     +  + + +     SK++++ P+ 
Sbjct: 81  QEEMEKTLQQMEEVLG----SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL 136

Query: 81  PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
            +A  +  + Y   G    A+T             ++Q
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ 174

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 15/114 (13%)

Query: 16  GNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKN--RAAVYLKQNQNDKVIEDCS 71
           G   +K+GD  +A   ++ AL            +  L+     +           +    
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 72  KSLEIVPDDPKALFRRCQAY--------EAIGKFEEA---YTDAKHIHRVEPTN 114
            ++++   D ++ +    AY        +     ++A   Y  A+ + R   +N
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 8/98 (8%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIE 68
              +      +  D   A+  Y +A  V   E   R  A  +   + + ++Q + D+   
Sbjct: 117 MALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176

Query: 69  DCSKSLEIVPDDP------KALFRRCQAYEAIGKFEEA 100
              K   +  +        K    +         +  A
Sbjct: 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 11/103 (10%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKV 66
             K         +Q  ++ A     K   +  E             +  V L +      
Sbjct: 158 IGKA---SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214

Query: 67  IEDCSKSLEIV----PDDPKALFRRCQAYEA--IGKFEEAYTD 103
            +   +S  I      +D  AL    QAY+     +       
Sbjct: 215 QKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRS 257

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 37/280 (13%), Positives = 76/280 (27%), Gaps = 100/280 (35%)

Query: 35  ALKVTAEESHERATCLKNRAAVYLKQNQNDK---VIEDCSKSLEIVPDDPKALFRRCQAY 91
            L + AE   +             K    DK   +IE     LE  P + + +F R    
Sbjct: 329 RLSIIAESIRDGLATWD-----NWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRL--- 378

Query: 92  EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHN------- 144
            ++  F      A  I    PT      +LS ++  V K   +   + NK+H        
Sbjct: 379 -SV--FPP---SAH-I----PTI-----LLSLIWFDVIK--SDVMVVVNKLHKYSLVEKQ 420

Query: 145 --MFKYV-----FDTSAPMDKRVTAVNNLVV--------------------------LAR 171
                        +    ++    A++  +V                          +  
Sbjct: 421 PKESTISIPSIYLELKVKLENE-YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 172 EMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITS-IIKQG---------VDILKR 221
            +   E        +++           ++L +  F+   I             ++ L++
Sbjct: 480 HLKNIEH------PERMTLF------RMVFL-DFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 222 L-----YMSKNENIRVRALVGLCKLGSMGGSDASIRPFAD 256
           L     Y+  N+    R +  +         +     + D
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 41/237 (17%), Positives = 75/237 (31%), Gaps = 58/237 (24%)

Query: 205 EDFITSIIKQGVDILKRLYMSKNENIRVRALVG-LCKLGSMGGSDASIRPFADGSTRK-- 261
           +D   SI+ +    +  + MSK+       L   L            ++ F +   R   
Sbjct: 39  QDMPKSILSKEE--IDHIIMSKDAVSGTLRLFWTLLSKQEEM-----VQKFVEEVLRINY 91

Query: 262 --LAEACRRFLVNPA---------RDP---DIRRWAAEGLAYLTLDAEVKEALIEDKPAL 307
             L    +     P+         RD    D + +A   ++ L    ++++AL+E +PA 
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 308 AALVD-VASSVKYKNVWNGTQS---DALKD--VDKAFDE--FMEEVAKLEKEEA--EMLE 357
             L+D V  S        G      D      V    D   F   +      E   EML+
Sbjct: 152 NVLIDGVLGS--------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 358 TLY----QDEKELADFYSLLSTLVNGSSSVGMRKKRGLQPYNLP---------WSKE 401
            L      +    +D  S +   ++   S+    +R L+               + +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIH---SIQAELRRLLKSKPYENCLLVLLNVQNAK 257

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
            N   +  L   G     Q DY  +L  Y +AL++   E+ E    L         Q+  
Sbjct: 42  QNSEQWALL---GEYYLWQNDYSNSLLAYRQALQL-RGENAELYAALATVLYYQASQHMT 97

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
            +      K+L +  ++  AL            + +A    + +  +             
Sbjct: 98  AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR---INRTQL 154

Query: 124 LFAIVTKRMQENEQLQNKVHN 144
           + +I   ++ +        H+
Sbjct: 155 VESINMAKLLQRRSDLEHHHH 175

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 13/114 (11%), Positives = 37/114 (32%), Gaps = 15/114 (13%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVT---AEESHERATCLKNRAAVYL 58
           ++      + L+ +     ++ + + A++   KAL+     A    +   C + +    +
Sbjct: 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299

Query: 59  KQNQN------------DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
              +N               +    K+ E   +  +        +    ++EEA
Sbjct: 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 21  KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
           +  +         +AL+            L++ A  Y ++++ DK IE   K+LE +P++
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280

Query: 81  PKALFRRCQAYEAIGKFEEAYTDAKHIHR 109
                +    Y A         +     +
Sbjct: 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 14/111 (12%), Positives = 36/111 (32%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
            N    + L  +          + A+D   +A+++  +  + +         +  +  + 
Sbjct: 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEE 229

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
            +  +   ++LE  P     L    + Y    + ++A    K      P N
Sbjct: 230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 12/102 (11%), Positives = 33/102 (32%), Gaps = 13/102 (12%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQN 61
            +      L        K  +   AL  + + ++   +   ++       +   +Y + +
Sbjct: 5   EDPFTRYAL---AQEHLKHDNASRALALFEELVETDPDYVGTY------YHLGKLYERLD 55

Query: 62  QNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEAY 101
           + D  I+  ++ +E+  +    K L     A       E  +
Sbjct: 56  RTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)

Query: 21  KQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
           K+G Y+ A     +AL++  +   + H + A  L N A +   Q + ++V     ++LEI
Sbjct: 97  KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156

Query: 77  V-----PDDPKALFRRC---QAYEAIGKFEEA 100
                 PDDP     +      Y   GK+++A
Sbjct: 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 11/91 (12%)

Query: 21  KQGDYETALDFYTKALKVTAE----ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           KQG Y+ A   Y + L    E      + +      +       +++             
Sbjct: 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSW 240

Query: 76  IV---PDDP---KALFRRCQAYEAIGKFEEA 100
                 D P     L      Y   GK E A
Sbjct: 241 YKACKVDSPTVNTTLRSLGALYRRQGKLEAA 271

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 2/63 (3%)

Query: 16  GNSAFKQGDYETALDFYTKAL--KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
                 +     +  +       K    +S    T L++  A+Y +Q + +        +
Sbjct: 219 EEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278

Query: 74  LEI 76
              
Sbjct: 279 SRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 21  KQGDYETALDFYTKAL----KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
            Q  Y+ A      AL    K   ++    A  L N A +Y K+ +  +    C ++LEI
Sbjct: 55  DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114

Query: 77  V-----PDDP---KALFRRCQAYEAIGKFEEA 100
                    P   K L       +  GK EE 
Sbjct: 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEV 146

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 21  KQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
            QG  E    +Y +AL++ A          A    N A+ YLKQ +         + L  
Sbjct: 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

Query: 77  V---------PDDPKALFRRCQAYEAIGKFEEA 100
                      D+        +  E+  K  ++
Sbjct: 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS 231

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCS 71
            + +       +A+    +AL+   +     H + AT L   A VY  QN+  +     +
Sbjct: 8   HHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN 67

Query: 72  KSLEIV-----PDDPKALFRRC---QAYEAIGKFEEA 100
            +L I       D P            Y   GK++EA
Sbjct: 68  DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 12/92 (13%)

Query: 21  KQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
           K+G Y+ A     +AL++  +   + H + A  L N A +   Q + ++V     ++LEI
Sbjct: 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182

Query: 77  V-----PDDP---KALFRRCQAYEAIGKFEEA 100
                 PDDP   K        Y   GKF++A
Sbjct: 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 22  QGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77
           QG YE    +Y +AL++            A    N A+ YLKQ +  +      + L   
Sbjct: 166 QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225

Query: 78  ------PDDP---KALFRRCQAYEAIGKFEEA 100
                   D           +  E  GK ++ 
Sbjct: 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDG 257

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 19/103 (18%), Positives = 26/103 (25%), Gaps = 14/103 (13%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAE----ESH-ERATCLKNRAAVYLKQNQN 63
            N L    +   KQG ++ A   Y + L    E        E      +       + + 
Sbjct: 198 KNNL---ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254

Query: 64  DKVIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA 100
                             D P     L      Y   GKFE A
Sbjct: 255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAA 297

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 15/104 (14%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQND 64
            + L         QG YE A+    +AL+   +     H + AT L   A VY  QN+  
Sbjct: 30  LHNL---VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86

Query: 65  KVIEDCSKSLEIV-----PDDPKALFRRC---QAYEAIGKFEEA 100
                 + +L I       D P            Y   GK++EA
Sbjct: 87  DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 130

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 12/97 (12%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCS 71
                 Q  Y+ A +    AL +  +   + H   A  L N A +Y K+ +  +    C 
Sbjct: 76  ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 135

Query: 72  KSLEIV-----PDDP---KALFRRCQAYEAIGKFEEA 100
           ++LEI       D P   K L       +  GK+EE 
Sbjct: 136 RALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 4/75 (5%)

Query: 26  ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85
           +   +     L     +  +           Y +  Q D  +     +L+  P    A  
Sbjct: 2   QAITERLEAML----AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWK 57

Query: 86  RRCQAYEAIGKFEEA 100
              +  +  G    A
Sbjct: 58  WLGKTLQGQGDRAGA 72

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 23/83 (27%)

Query: 9  YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLK--------NRAAVYLKQ 60
          +  L   GN+ +KQGDY+ A+++Y KAL+            L         N    Y KQ
Sbjct: 12 WYNL---GNAYYKQGDYDEAIEYYQKALE------------LDPNNAEAWYNLGNAYYKQ 56

Query: 61 NQNDKVIEDCSKSLEIVPDDPKA 83
             D+ IE   K+LE+ P++ +A
Sbjct: 57 GDYDEAIEYYQKALELDPNNAEA 79

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 37.4 bits (88), Expect = 8e-04
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 52  NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
           N    Y KQ   D+ IE   K+LE+ P++ +A +    AY   G ++EA         +E
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA---------IE 64

Query: 112 PTNKAIQ 118
              KA++
Sbjct: 65  YYQKALE 71

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 17  NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
           + A      + A   + +      ++       L  +AA ++ Q + +       ++L+ 
Sbjct: 174 SLAAGGEKLQDAYYIFQEMA----DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229

Query: 77  VPDDPKALFRRCQAYEAIGKFEEA 100
               P+ L       + +GK  E 
Sbjct: 230 DSGHPETLINLVVLSQHLGKPPEV 253

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	401
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.96
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.89
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.81
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.77
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.76
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.76
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.76
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.76
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.75
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.74
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.73
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.71
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.71
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.7
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.7
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.7
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.67
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.67
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.67
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.66
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.65
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.65
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.64
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.64
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.64
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.63
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.62
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.62
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.62
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.62
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.62
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.62
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.61
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.61
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.61
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.6
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.6
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.6
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.6
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.59
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.59
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.59
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.59
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.59
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.59
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.58
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.58
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.57
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.57
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.57
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.57
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.56
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.56
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.55
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.55
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.55
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.54
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.54
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.54
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.52
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.51
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.51
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.51
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.5
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.49
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.49
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.49
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.49
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.48
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.48
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.47
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.47
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.46
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.45
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.44
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.44
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.44
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.43
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.42
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.42
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.41
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.41
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.4
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.4
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.4
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.39
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.39
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.38
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.38
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.35
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.35
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.34
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.33
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.33
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.33
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.32
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.32
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.32
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.31
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.31
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.3
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.3
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.3
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.3
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.29
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.29
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.27
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.26
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.26
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.25
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.24
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.23
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.23
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.23
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.22
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.22
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.22
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.22
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.21
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.21
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.19
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.18
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.17
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.16
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.16
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.15
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.15
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.14
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.14
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.13
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.13
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.12
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.12
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.12
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.1
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.09
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.09
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.07
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.03
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.03
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.03
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.01
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.01
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.99
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.98
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.98
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.96
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.96
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.95
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.89
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.87
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.86
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.84
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.82
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.78
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.74
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.73
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.71
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.69
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.68
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.68
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.68
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.67
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.55
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.54
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.46
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.43
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.38
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.37
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.37
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.37
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.36
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.35
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.25
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.2
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.16
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.03
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.9
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.89
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.83
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.72
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.67
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.5
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.39
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.39
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.38
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.35
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.35
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.2
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.15
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.06
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.99
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	96.93
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.85
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	96.85
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	96.75
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	96.67
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.23
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.19
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	96.19
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.89
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	95.66
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	95.54
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.33
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.06
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.86
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	94.8
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.75
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.71
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	94.69
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	94.65
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	94.59
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	94.58
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	94.33
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	94.27
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.26
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.17
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	94.09
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.02
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.0
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.84
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	93.83
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	93.82
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	93.73
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.69
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	93.66
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	93.6
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	93.51
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	93.28
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.27
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.17
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	93.15
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	93.04
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.84
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	92.52
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	91.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	91.9
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	91.35
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	91.15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	91.01
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.77
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	90.0
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.78
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	89.58
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.39
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	89.27
3nmz_A	458	APC variant protein; protein-protein complex, arma	89.15
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	88.29
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	88.29
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	87.52
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	87.41
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	87.02
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	86.55
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	86.36
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.28
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	85.77
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	82.08
3nmz_A	458	APC variant protein; protein-protein complex, arma	81.51
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	80.19

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=8.2e-34  Score=305.47  Aligned_cols=170  Identities=52%  Similarity=0.834  Sum_probs=159.0

Q ss_pred             HHHHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhh
Q psy4703         209 TSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA  288 (401)
Q Consensus       209 ~~i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~egla  288 (401)
                      ..+.+.|+++|..+++++++.++.+|+++|||+++++++|.+.++|.+|++..|++.|++||.+++.|++.++||+|||+
T Consensus       325 ~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLa  404 (810)
T 3now_A          325 KALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA  404 (810)
T ss_dssp             HTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            44677899999999999999999999999999998888889899999999999999999999998888999999999999


Q ss_pred             hccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc-----HHHHHHHhhHhhhhhhhhccCCCc
Q psy4703         289 YLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD-----EFMEEVAKLEKEEAEMLETLYQDE  363 (401)
Q Consensus       289 y~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~  363 (401)
                      |+|++++||++++.|..++..||+++++. ++++.||++ +||.|||+.+|     ++|.+|++|+++|+  |   ++||
T Consensus       405 yLS~~~~vk~~lv~d~g~Ip~LV~LL~s~-d~~i~~~al-~~L~NLt~~~d~q~~~~~l~~la~~s~~~v--~---~~~~  477 (810)
T 3now_A          405 YLTLDAECKEKLIEDKASIHALMDLARGG-NQSCLYGVV-TTFVNLCNAYEKQEMLPEMIELAKFAKQHI--P---EEHE  477 (810)
T ss_dssp             HHTTSHHHHHHHHHCHHHHHHHHHHHHTT-CGGGHHHHH-HHHHHHTTCSCCCCCCCSCGGGTTTTCCSC--C---CSSC
T ss_pred             HHhCCcHHHHHHHHccchHHHHHHHhCCC-ChHHHHHHH-HHHHHHcCCchhhhhhHHHHHHHHHhhccC--c---cccc
Confidence            99999999999999999999999999987 899999999 99999999886     67899999999998  8   8899


Q ss_pred             cchHHHHHH-HHHHHhcccccee
Q psy4703         364 KELADFYSL-LSTLVNGSSSVGM  385 (401)
Q Consensus       364 ~~~~~~v~~-~~~~~~~~~~~~~  385 (401)
                      +|+++||.+ |+.++++|++-.+
T Consensus       478 ld~~~~v~~r~~~VveaGaVp~L  500 (810)
T 3now_A          478 LDDVDFINKRITVLANEGITTAL  500 (810)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             cccHHHHHHHHHHHHHCcCHHHH
Confidence            999999999 9999999987544

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.4e-28  Score=259.23  Aligned_cols=233  Identities=15%  Similarity=0.138  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHH-Hhhc--CCCChhHHHHHHHHHHHhhhc--chhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHH---
Q psy4703         137 QLQNKVHNMFK-YVFD--TSAPMDKRVTAVNNLVVLARE--MSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFI---  208 (401)
Q Consensus       137 ~~~~~~~~~~~-~~~~--~~~~~~~~~~a~~~L~~l~~~--~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi---  208 (401)
                      .+..++.++++ .+.+  .....+.......-+..+-.-  +..++.+..++-+..+.+.+...+++++..+.=+.+   
T Consensus       204 ~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaA  283 (778)
T 3opb_A          204 DFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSA  283 (778)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            45566777777 3333  222334444444444433332  333344434455666666665234555655543333   


Q ss_pred             -------HHHHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHH
Q psy4703         209 -------TSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRR  281 (401)
Q Consensus       209 -------~~i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~  281 (401)
                             ..|.+++++||.+++++  +.++++|+|+|||+++.++.       ..+++.+|++.|++||.++..  +.++
T Consensus       284 Ci~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~-------~~~si~~La~~~~~~L~~~~~--~~~~  352 (778)
T 3opb_A          284 CIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKL-------TCINLKQLSEIFINAISRRIV--PKVE  352 (778)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTC-------TTCCHHHHHHHHHHHTTTCCH--HHHH
T ss_pred             hCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCC-------CcCcHHHHHHHHHHHHhcCCc--cHHH
Confidence                   56789999999999965  68999999999999986542       357889999999999997643  4599


Q ss_pred             hHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc------HHHHHHHhhHhhhhhh
Q psy4703         282 WAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD------EFMEEVAKLEKEEAEM  355 (401)
Q Consensus       282 ~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~------~~~~~l~~~~~~~~~~  355 (401)
                      ||||||||+|++|+|||.|++|+.+|++||+++++..++++.||++ +||+|||+|+|      ++|.+||+||++|+  
T Consensus       353 ~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal-~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~--  429 (778)
T 3opb_A          353 MSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLL-VIMANLSTLPEEXXXXXXXXXXXXXXXXXXX--  429 (778)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHH-HHHHHTTCCCCCCCCCCC---------------
T ss_pred             HHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHH-HHHHHhcCCCcccchhhhhhhhhhhhccccC--
Confidence            9999999999999999999999999999999999744899999999 99999999999      69999999999998  


Q ss_pred             hhccCCCc----cchHHHHHH--HHHHHhccccceeh
Q psy4703         356 LETLYQDE----KELADFYSL--LSTLVNGSSSVGMR  386 (401)
Q Consensus       356 ~~~~~~~~----~~~~~~v~~--~~~~~~~~~~~~~~  386 (401)
                      |   +.||    ++++++|..  |+.|+++|++-.+.
T Consensus       430 p---~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv  463 (778)
T 3opb_A          430 P---AADKVGAEKAAKEDILLFNEKYILRTELISFLK  463 (778)
T ss_dssp             --------CCTHHHHHHHHHHHHHHHTTTTTHHHHHH
T ss_pred             c---ccCcccccccchHHHHHHHHHHHHHCcCHHHHH
Confidence            7   5555    666777766  99999999987664

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.89  E-value=6e-22  Score=166.51  Aligned_cols=120  Identities=25%  Similarity=0.362  Sum_probs=115.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ...+|+.++.++++|+.+++.|+|++|+.+|+++++++ |+   ++.+|+++|.||+++|++++|+.+|+++|+++|+++
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PE---NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence            46799999999999999999999999999999999999 76   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      .+|+++|.+|..+|+|++|+.+|+++++++|+++.++..++++.
T Consensus        82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           82 KGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999887763

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.81  E-value=1.4e-19  Score=156.86  Aligned_cols=129  Identities=26%  Similarity=0.334  Sum_probs=115.1

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-------CC-------CcchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------EE-------SHERATCLKNRAAVYLKQNQNDKVIEDC   70 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-------p~-------~~~~~~~~~n~a~~y~klg~y~~Ai~~~   70 (401)
                      ..+.+..++..|+.+++.|+|++|+.+|++++.+.+       |.       .+....+|+|+|.||+++|+|++|+.+|
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            346788999999999999999999999999999910       11       2448899999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHHHHHH
Q psy4703          71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK-AIQPVLSRLFAIVTKRMQ  133 (401)
Q Consensus        71 ~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~-~~~~~L~~l~~~~~~~~~  133 (401)
                      +++|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|+++ .+...+..+...+++..+
T Consensus        87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A           87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA  150 (162)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 778888888777666543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.80  E-value=4.6e-19  Score=155.20  Aligned_cols=125  Identities=18%  Similarity=0.253  Sum_probs=114.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---------HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~---------~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l   76 (401)
                      ...+..+++.|+.+++.|+|++|+.+|++||+++ |+.         +.++.+|.|+|.|+.++|+|++|+.+|++||++
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3467889999999999999999999999999999 762         124559999999999999999999999999999


Q ss_pred             -------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          77 -------VPDDPKAL----FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        77 -------dP~~~kA~----~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                             +|+++++|    +++|.++..+|+|++|+.+|+++++++|++..+...+..+...+.+.
T Consensus        87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~  152 (159)
T 2hr2_A           87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR  152 (159)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred             hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence                   99999999    99999999999999999999999999999999988888887776654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.78  E-value=3.4e-18  Score=148.72  Aligned_cols=111  Identities=12%  Similarity=0.056  Sum_probs=107.4

Q ss_pred             CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      ++..+|+++..++..|..++..|+|++|+.+|++++.++ |+   ++.+|+++|.+|..+|+|++|+.+|+++++++|++
T Consensus        28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            467899999999999999999999999999999999999 77   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~  115 (401)
                      +.+|+++|.+|..+|++++|+.+|+++++++|+++
T Consensus       104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=3.6e-18  Score=141.31  Aligned_cols=118  Identities=22%  Similarity=0.310  Sum_probs=112.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      |..++.++..|+.++..|+|++|+.+|+++++++ |+   ++.+|+++|.+|+++|+|++|+.+|+++++++|+++.+++
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            5688999999999999999999999999999999 76   8899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC------CCCccHHHHHHHHHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVE------PTNKAIQPVLSRLFAI  127 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~------P~~~~~~~~L~~l~~~  127 (401)
                      ++|.++..+|++++|+.+|+++++++      |+++.+...+.++...
T Consensus        77 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           77 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999      9998888888776543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.77  E-value=1e-17  Score=179.96  Aligned_cols=164  Identities=16%  Similarity=0.155  Sum_probs=148.9

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      -.|++++++.++|+.+...|+|++|+.+|++|++++ |+   ++.+|+|+|.+|.++|++++|+.+|++||+++|+++.+
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a   79 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA   79 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            469999999999999999999999999999999999 77   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA  162 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a  162 (401)
                      |+++|.+|..+|++++|+.+|+++++++|++..++..++.++...++..++..        +|++++. .|...+.....
T Consensus        80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~--------~~~~Al~l~P~~~~a~~~L  151 (723)
T 4gyw_A           80 YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA--------SYRTALKLKPDFPDAYCNL  151 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCCChHHHhhh
Confidence            99999999999999999999999999999999999999999999988765544        7788877 67777888888


Q ss_pred             HHHHHHhhhcchhhHHH
Q psy4703         163 VNNLVVLAREMSGAEML  179 (401)
Q Consensus       163 ~~~L~~l~~~~~gae~~  179 (401)
                      +..+..+++.+.+.+.+
T Consensus       152 ~~~l~~~g~~~~A~~~~  168 (723)
T 4gyw_A          152 AHCLQIVCDWTDYDERM  168 (723)
T ss_dssp             HHHHHHTTCCTTHHHHH
T ss_pred             hhHHHhcccHHHHHHHH
Confidence            88888888876655444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.77  E-value=1.6e-17  Score=141.05  Aligned_cols=127  Identities=11%  Similarity=0.157  Sum_probs=118.8

Q ss_pred             CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      ++..+|++...++..|..++..|+|++|+..|++++..+ |+   ++.+|+++|.+|..+|+|++|+.+|++++.++|++
T Consensus        10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A           10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HY---DARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            467899999999999999999999999999999999999 76   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      +.+++.+|.+|..+|++++|+..|+++++++|+++.......++...+...
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887777766655543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.76  E-value=1.4e-17  Score=151.94  Aligned_cols=161  Identities=18%  Similarity=0.225  Sum_probs=132.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      |.++..+...|..++..|++++|+..|+++++++ |+   ++.+++++|.++..+|++++|+..|+++++++|+++.+++
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~   77 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQ---DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM   77 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            6677888899999999999999999999999999 76   8889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703          86 RRCQAYEAI-----------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA  154 (401)
Q Consensus        86 ~~a~a~~~l-----------g~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (401)
                      .+|.++..+           |++++|+..|+++++++|++..++..++.++...++..++..        .|+.++....
T Consensus        78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~--------~~~~al~~~~  149 (217)
T 2pl2_A           78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA--------SLKQALALED  149 (217)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCC
T ss_pred             HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH--------HHHHHHhccc
Confidence            999999999           999999999999999999999999999988888888755544        5666665235


Q ss_pred             ChhHHHHHHHHHHHhhhcchhhHH
Q psy4703         155 PMDKRVTAVNNLVVLAREMSGAEM  178 (401)
Q Consensus       155 ~~~~~~~a~~~L~~l~~~~~gae~  178 (401)
                      +..........+...++.+++...
T Consensus       150 ~~~~~~~la~~~~~~g~~~~A~~~  173 (217)
T 2pl2_A          150 TPEIRSALAELYLSMGRLDEALAQ  173 (217)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHH
Confidence            566667777777777777655433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.76  E-value=6.9e-18  Score=141.48  Aligned_cols=112  Identities=23%  Similarity=0.304  Sum_probs=101.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----   80 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~----   80 (401)
                      .++.+.++++.|+.+++.|+|++|+.+|++||+++ |+   ++.+|.|+|.+|+++|+|++|+.+|+++|+++|++    
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   79 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY   79 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence            35678899999999999999999999999999999 77   89999999999999999999999999999999866    


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        81 ---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                         .++|+++|.++..+|+|++|+.+|+++++++|+ ++....+
T Consensus        80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  122 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV  122 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence               468999999999999999999999999999885 4443333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.76  E-value=1.5e-17  Score=143.23  Aligned_cols=125  Identities=13%  Similarity=0.155  Sum_probs=116.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      +..+|+++..+...|..++..|+|++|+..|++++.++ |+   ++.+|+++|.+|..+|+|++|+.+|++++.++|+++
T Consensus        14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   89 (148)
T 2vgx_A           14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP   89 (148)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            67899999999999999999999999999999999999 76   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~  130 (401)
                      .+++++|.+|..+|++++|+.+|+++++++|+++.......++...+..
T Consensus        90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  138 (148)
T 2vgx_A           90 RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA  138 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998887766666555443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.76  E-value=2.6e-17  Score=150.17  Aligned_cols=162  Identities=15%  Similarity=0.172  Sum_probs=140.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc-----------CCHHHHHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-----------NQNDKVIEDC   70 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl-----------g~y~~Ai~~~   70 (401)
                      |+.+|+++..+...|..+...|++++|+..|+++++++ |+   +..+++++|.+|..+           |++++|+..|
T Consensus        32 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~  107 (217)
T 2pl2_A           32 LKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PR---YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL  107 (217)
T ss_dssp             HTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence            57899999999999999999999999999999999999 77   899999999999999           9999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4703          71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF  150 (401)
Q Consensus        71 ~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~  150 (401)
                      +++++++|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..++.++...++..++..        .|+.++
T Consensus       108 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~--------~~~~al  178 (217)
T 2pl2_A          108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALA--------QYAKAL  178 (217)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHH--------HHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHH--------HHHHHH
Confidence            99999999999999999999999999999999999999999 999999999999999988755544        778887


Q ss_pred             c-CCCChhHHHHHHHHHHHhhhcchhh
Q psy4703         151 D-TSAPMDKRVTAVNNLVVLAREMSGA  176 (401)
Q Consensus       151 ~-~~~~~~~~~~a~~~L~~l~~~~~ga  176 (401)
                      . .|.+..........+...++.+++.
T Consensus       179 ~~~P~~~~~~~~la~~~~~~g~~~~A~  205 (217)
T 2pl2_A          179 EQAPKDLDLRVRYASALLLKGKAEEAA  205 (217)
T ss_dssp             HHSTTCHHHHHHHHHHHTC--------
T ss_pred             HhCCCChHHHHHHHHHHHHccCHHHHH
Confidence            7 6666666666666666777765443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.75  E-value=5e-18  Score=146.37  Aligned_cols=122  Identities=12%  Similarity=0.145  Sum_probs=112.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      +..+|+.+..++..|..|+..|+|++|+.+|+++++++ |+   ++.+|+++|.+|..+|++++|+.+|+++++++|+++
T Consensus        24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   99 (150)
T 4ga2_A           24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ER---DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK   99 (150)
T ss_dssp             SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence            45678889999999999999999999999999999999 77   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTD-AKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~-~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      .+++++|.+|..+|++++|... ++++++++|+++.+....+++...
T Consensus       100 ~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A          100 DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            9999999999999999988776 599999999999998887776553

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.75  E-value=3.2e-17  Score=160.18  Aligned_cols=144  Identities=28%  Similarity=0.376  Sum_probs=128.3

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------------cchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES------------HERATCLKNRAAVYLKQNQNDKVIEDC   70 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~------------~~~~~~~~n~a~~y~klg~y~~Ai~~~   70 (401)
                      +.+|..+..++..|+.++..|+|++|+.+|+++++++ |+.            +....+|.++|.||+++|+|++|+.+|
T Consensus       141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  219 (336)
T 1p5q_A          141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC  219 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4578889999999999999999999999999999999 762            112689999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4703          71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF  150 (401)
Q Consensus        71 ~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~  150 (401)
                      +++|+++|+++.+++++|.+|..+|+|++|+.+|+++++++|++..++..++.++..+++..++..   .....||..+.
T Consensus       220 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~  296 (336)
T 1p5q_A          220 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK---KLYANMFERLA  296 (336)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999988876655   23344555443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.75  E-value=6e-17  Score=140.43  Aligned_cols=113  Identities=27%  Similarity=0.316  Sum_probs=108.0

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      ..++.++..++..|+.++..|+|++|+.+|+++++++ |+   +..+|+++|.+|+.+|+|++|+.+|+++++++|+++.
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   80 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK   80 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-Cc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            4577899999999999999999999999999999999 76   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP  119 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~  119 (401)
                      +|+++|.+|..+|++++|+.+|+++++++|++..++.
T Consensus        81 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  117 (164)
T 3sz7_A           81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM  117 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence            9999999999999999999999999999999988543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.75  E-value=2e-17  Score=168.43  Aligned_cols=145  Identities=28%  Similarity=0.349  Sum_probs=122.0

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc------------chHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH------------ERATCLKNRAAVYLKQNQNDKVIEDC   70 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~------------~~~~~~~n~a~~y~klg~y~~Ai~~~   70 (401)
                      +.+|..+..++.+|+.+++.|+|++|+.+|++|++++ |..+            ....+|+|+|.||+++|+|++|+.+|
T Consensus       262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  340 (457)
T 1kt0_A          262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECC  340 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            4567889999999999999999999999999999999 7621            12789999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4703          71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF  150 (401)
Q Consensus        71 ~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~  150 (401)
                      +++|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..++.++..+++..++.+   .....||..+.
T Consensus       341 ~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~f~k~~  417 (457)
T 1kt0_A          341 DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR---RIYANMFKKFA  417 (457)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH---HHHHHC-----
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999999999999999999988776655   33445555554


Q ss_pred             c
Q psy4703         151 D  151 (401)
Q Consensus       151 ~  151 (401)
                      .
T Consensus       418 ~  418 (457)
T 1kt0_A          418 E  418 (457)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.74  E-value=1.5e-16  Score=144.17  Aligned_cols=121  Identities=16%  Similarity=0.225  Sum_probs=113.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHH----------------HHHHHHHcCCHHHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKN----------------RAAVYLKQNQNDKVIEDC   70 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n----------------~a~~y~klg~y~~Ai~~~   70 (401)
                      ++++.+..+|..++..|+|++|+.+|+++++++ |+   ++.++++                +|.+|.++|+|++|+..|
T Consensus         2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~   77 (208)
T 3urz_A            2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-ID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY   77 (208)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            357788999999999999999999999999999 65   8888998                999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        71 ~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      +++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++...++.
T Consensus        78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999999999999999999999999988766543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.73  E-value=3.6e-16  Score=137.17  Aligned_cols=158  Identities=12%  Similarity=0.105  Sum_probs=142.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      +++..|.+.|+.++..|+|++|+.+|+++++++ |+   +..++.++|.+|.++|++++|+..+.+++..+|.++.++..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   78 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYI   78 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHH
Confidence            467889999999999999999999999999999 77   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~  165 (401)
                      +|.++...++++.|...+++++.++|++..++..++.++...++..++..        +|+.++. .|.+.......+..
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~--------~~~~~l~~~p~~~~~~~~lg~~  150 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIE--------AYEKTISIKPGFIRAYQSIGLA  150 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHH--------HHHHHHHhcchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999888755544        6777777 67777777778888


Q ss_pred             HHHhhhcchhh
Q psy4703         166 LVVLAREMSGA  176 (401)
Q Consensus       166 L~~l~~~~~ga  176 (401)
                      +..+++.+++.
T Consensus       151 ~~~~g~~~~A~  161 (184)
T 3vtx_A          151 YEGKGLRDEAV  161 (184)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHCCCHHHHH
Confidence            88888865443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.73  E-value=7e-16  Score=140.19  Aligned_cols=160  Identities=16%  Similarity=0.200  Sum_probs=125.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p-~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      +.++..++..|..++..|+|++|+.+|+++++++ | .   +..+++++|.+|..+|+|++|+.+|+++++++|+++.++
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   79 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQ---DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAY   79 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCC---CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHH
Confidence            4456899999999999999999999999999999 6 4   678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---hhHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP---MDKRVT  161 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~  161 (401)
                      +.+|.+|..+|++++|+..|+++++++|+++.....+..++..++........+ ..+..+|+.++...++   ......
T Consensus        80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~~  158 (228)
T 4i17_A           80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI-EKAEENYKHATDVTSKKWKTDALYS  158 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH-HHHHHHHHHHHhcCCCcccHHHHHH
Confidence            999999999999999999999999999999955444444444333332222222 3455578888884433   344444


Q ss_pred             HHHHHHHhh
Q psy4703         162 AVNNLVVLA  170 (401)
Q Consensus       162 a~~~L~~l~  170 (401)
                      ....+...+
T Consensus       159 l~~~~~~~~  167 (228)
T 4i17_A          159 LGVLFYNNG  167 (228)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.71  E-value=1.5e-16  Score=158.83  Aligned_cols=155  Identities=8%  Similarity=-0.043  Sum_probs=140.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-NDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~-y~~Ai~~~~kAL~ldP~~   80 (401)
                      |..+|+.+.++...|..+...|++++|+..|+++|+++ |+   +..+|+++|.++..+|+ +++|+.+|+++|+++|++
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~  165 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN  165 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-cc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence            67889999999999999999999999999999999999 77   89999999999999997 999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (401)
                      +.+|+++|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++        ..+|++++. .|.+....
T Consensus       166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA--------l~~~~~al~l~P~~~~a~  237 (382)
T 2h6f_A          166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE--------LQYVDQLLKEDVRNNSVW  237 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH--------HHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH--------HHHHHHHHHhCCCCHHHH
Confidence            999999999999999999999999999999999999999999999998877544        347888887 56666666


Q ss_pred             HHHHHHHHH
Q psy4703         160 VTAVNNLVV  168 (401)
Q Consensus       160 ~~a~~~L~~  168 (401)
                      ......+..
T Consensus       238 ~~lg~~l~~  246 (382)
T 2h6f_A          238 NQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666555555

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.71  E-value=2.5e-17  Score=141.94  Aligned_cols=139  Identities=12%  Similarity=0.036  Sum_probs=116.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy4703          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAI   94 (401)
Q Consensus        15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~l   94 (401)
                      .|..+..+|++++|+..|.+++..+ |+   ++..++++|.+|+++|+|++|+.+|+++|+++|+++.+|+.+|.+|..+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   78 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSP-RQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE   78 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSH-HH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccC-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            5788888999999999999999999 55   8889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHH
Q psy4703          95 GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVN  164 (401)
Q Consensus        95 g~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~  164 (401)
                      |++++|+.+|+++++++|+++.++..++.++...++..++       +..+++++.. .|.+........+
T Consensus        79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a-------a~~~~~~al~l~P~~~~~~~l~~~  142 (150)
T 4ga2_A           79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR-------AKYWVERAAKLFPGSPAVYKLKEQ  142 (150)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH-------HHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-------HHHHHHHHHHhCcCCHHHHHHHHH
Confidence            9999999999999999999999999999998877765322       3334577777 5555544443333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.70  E-value=3.8e-16  Score=129.93  Aligned_cols=123  Identities=24%  Similarity=0.296  Sum_probs=111.9

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      ..+|.++..+...|..++..|+|++|+.+|.+++.++ |+   +..+++++|.+|+.+|+|++|+.+|+++++++|+++.
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~   78 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK   78 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence            4577889999999999999999999999999999999 76   7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CccHHHHHHHHHHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-----NKAIQPVLSRLFAIVT  129 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~-----~~~~~~~L~~l~~~~~  129 (401)
                      +++.+|.++..+|++++|+..|+++++++|+     +..+...+..+.....
T Consensus        79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998     6777777766655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.70  E-value=4.3e-16  Score=139.21  Aligned_cols=130  Identities=25%  Similarity=0.328  Sum_probs=117.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcc-------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE-------------RATCLKNRAAVYLKQNQNDKVIEDCS   71 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~-------------~~~~~~n~a~~y~klg~y~~Ai~~~~   71 (401)
                      .+..+..++..|+.++..|+|++|+.+|.+++.+. |..+.             ...++.++|.+|+.+|+|++|+.+|+
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  112 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS  112 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            45678899999999999999999999999999998 65220             13899999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHH
Q psy4703          72 KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN  135 (401)
Q Consensus        72 kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~  135 (401)
                      ++++++|+++.+++++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++..+..
T Consensus       113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998887765544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.70  E-value=1.3e-16  Score=159.25  Aligned_cols=162  Identities=7%  Similarity=-0.021  Sum_probs=136.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGD-YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~-y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      |..+|+++.+|..+|..+...|+ |++|+.+|+++++++ |+   +..+|+++|.++..+|+|++|+.+|+++|+++|++
T Consensus       124 l~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~---~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          124 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PK---NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence            56799999999999999999997 999999999999999 77   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc-CCCChhH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR-MQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~-~~a~~~~~~~~~~~~~~~~~-~~~~~~~  158 (401)
                      +.+|+++|.++..+|++++|+.+|+++++++|++..++..++.++..+... .++..   .....+|+.++. .|.+...
T Consensus       200 ~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~---~~el~~~~~Al~l~P~~~~a  276 (382)
T 2h6f_A          200 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL---EREVQYTLEMIKLVPHNESA  276 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH---HHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHH---HHHHHHHHHHHHHCCCCHHH
Confidence            999999999999999999999999999999999999999999998873332 22211   122356778877 5555554


Q ss_pred             HHHHHHHHHHhh
Q psy4703         159 RVTAVNNLVVLA  170 (401)
Q Consensus       159 ~~~a~~~L~~l~  170 (401)
                      .......+...+
T Consensus       277 ~~~l~~ll~~~g  288 (382)
T 2h6f_A          277 WNYLKGILQDRG  288 (382)
T ss_dssp             HHHHHHHHTTTC
T ss_pred             HHHHHHHHHccC
Confidence            444444444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.67  E-value=1.2e-15  Score=133.78  Aligned_cols=139  Identities=12%  Similarity=0.175  Sum_probs=130.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      |+.+|+++..+...|..++..|++++|+..+.+++... |+   ...++.++|.++...++++.|+..+.+++.++|.++
T Consensus        32 l~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~  107 (184)
T 3vtx_A           32 LKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TT---SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYA  107 (184)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-ch---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            56789999999999999999999999999999999999 76   889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (401)
                      .+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++..++..        +|+++++.
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~--------~~~~al~~  170 (184)
T 3vtx_A          108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK--------YFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH--------HHHHHHhC
Confidence            9999999999999999999999999999999999999999999999988765544        67777763

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=1.7e-15  Score=126.77  Aligned_cols=122  Identities=36%  Similarity=0.519  Sum_probs=113.2

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      ..+|..+..++..|..++..|+|++|+.+|+++++++ |+.+....++.++|.+|+.+|+|++|+.+|+++++++|+++.
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  100 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK  100 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence            4567889999999999999999999999999999999 763334899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      +++.+|.++..+|++++|+..|+++++++|++..++..+.++.
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888776654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.67  E-value=3.7e-16  Score=167.96  Aligned_cols=133  Identities=14%  Similarity=0.160  Sum_probs=126.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      |+.+|+.+.++.++|+.+.+.|++++|+.+|++|++++ |+   ++.+|+++|.+|..+|++++|+.+|+++++++|+++
T Consensus        36 l~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~---~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~  111 (723)
T 4gyw_A           36 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA  111 (723)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            56789999999999999999999999999999999999 77   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQL  138 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~  138 (401)
                      .+|+++|.+|..+|++++|+..|+++++++|++..++..++.++..+++..++...+
T Consensus       112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~  168 (723)
T 4gyw_A          112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM  168 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988877766644

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.67  E-value=3.1e-15  Score=121.61  Aligned_cols=123  Identities=27%  Similarity=0.387  Sum_probs=115.5

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      +.+|..+..+...|..++..|+|++|+.+|.+++... |+   ...++.++|.+|...|++++|+..+.++++.+|+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~   81 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK   81 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH
Confidence            4678899999999999999999999999999999999 76   7889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                      +++.+|.++..+|++++|+..|+++++++|++..++..++.++..++
T Consensus        82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998888888776554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.66  E-value=2.2e-15  Score=136.81  Aligned_cols=126  Identities=20%  Similarity=0.256  Sum_probs=117.5

Q ss_pred             ccCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           2 IDNNM-NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         2 i~~~p-~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      ++.+| .+...+...|..++..|+|++|+.+|+++++++ |+   +..++.++|.+|..+|+|++|+..++++++++|++
T Consensus        34 l~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           34 LKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            34456 677888899999999999999999999999999 76   89999999999999999999999999999999999


Q ss_pred             H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccHHHHHHHHHHHHHHH
Q psy4703          81 P-------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        81 ~-------kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~--~~~~~~~L~~l~~~~~~~  131 (401)
                      +       .+|+.+|.++..+|++++|+..|+++++++|+  +..++..++.++...+..
T Consensus       110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            9       77999999999999999999999999999999  999999999998877765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.66  E-value=6.7e-16  Score=153.22  Aligned_cols=127  Identities=29%  Similarity=0.513  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hcCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALK----------------VTAEESHERATCLKNRAAVYLKQNQNDKVIED   69 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~----------------l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~   69 (401)
                      ...+..++..|+.+++.|+|++|+.+|+++++                ++    +....+|.++|.||+++|+|++|+.+
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~----~~~~~~~~nla~~~~~~g~~~~A~~~  295 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ----PVALSCVLNIGACKLKMSDWQGAVDS  295 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH----HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH----HHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            34577899999999999999999999999999                45    34889999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        70 ~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      |+++|+++|+++++++++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++..++.+
T Consensus       296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888877665544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.65  E-value=6.3e-15  Score=117.75  Aligned_cols=115  Identities=30%  Similarity=0.443  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      +.+..+...|..++..|+|++|+.+|++++..+ |+   +..++.++|.+|..+|+|++|+..++++++.+|.++.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR   77 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHH
Confidence            457889999999999999999999999999999 76   78899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      +|.++..+|++++|+..|+++++++|+++.++..++.+.
T Consensus        78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999999999999999999998888877664

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.65  E-value=2.3e-15  Score=123.47  Aligned_cols=121  Identities=26%  Similarity=0.365  Sum_probs=114.2

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      ..|....+++..|..++..|+|++|+.+|+++++.+ |+   +..+++++|.+|+..|++++|+..++++++++|.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   86 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG   86 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence            467889999999999999999999999999999999 76   78999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      ++.+|.++..+|++++|+..|+++++++|++..++..++.++...
T Consensus        87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999888888776543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.64  E-value=2.6e-14  Score=121.81  Aligned_cols=126  Identities=25%  Similarity=0.401  Sum_probs=113.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      ..+..+...|..++..|+|++|+.+|.++++.+ |+   +..++.++|.++..+|+|++|+..+.++++++|.++.+++.
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   86 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-PS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   86 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            568889999999999999999999999999999 76   78999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH--HHHHHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL--FAIVTKRMQENE  136 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l--~~~~~~~~~a~~  136 (401)
                      +|.++..+|++++|+..|+++++++|++..+...++.+  ....++..++..
T Consensus        87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~  138 (166)
T 1a17_A           87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  138 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888666655  334444444333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.64  E-value=1.8e-16  Score=155.07  Aligned_cols=139  Identities=29%  Similarity=0.432  Sum_probs=96.6

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchH-----------------HHHHHHHHHHHHcCCHHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERA-----------------TCLKNRAAVYLKQNQNDKV   66 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~-----------------~~~~n~a~~y~klg~y~~A   66 (401)
                      ..++.+..++..|+.+++.|+|++|+.+|.+++.+. |+   +.                 .+|+|+|.||+++|+|++|
T Consensus       174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~---~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A  249 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GD---DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEA  249 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CH---HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cc---chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            346788999999999999999999999999999999 65   43                 4899999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF  146 (401)
Q Consensus        67 i~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~  146 (401)
                      +.+|+++|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|+++.++..+..+........       .....+|
T Consensus       250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~-------~~a~~~~  322 (338)
T 2if4_A          250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY-------QKQKEMY  322 (338)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888755443332       2334467


Q ss_pred             HHhhcCC
Q psy4703         147 KYVFDTS  153 (401)
Q Consensus       147 ~~~~~~~  153 (401)
                      +.++...
T Consensus       323 ~~~l~~~  329 (338)
T 2if4_A          323 KGIFKGK  329 (338)
T ss_dssp             -------
T ss_pred             HHhhCCC
Confidence            7777633

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.64  E-value=4e-13  Score=133.19  Aligned_cols=173  Identities=17%  Similarity=0.189  Sum_probs=139.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      +..+|.++..+...|..++..|+|++|+..|+++++.+ |+   +..+++++|.+|+.+|++++|+..|+++++++|+++
T Consensus        19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~   94 (450)
T 2y4t_A           19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT   94 (450)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            56789999999999999999999999999999999999 76   799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhc-CC
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTKRMQENEQ----LQNKVHNMFKYVFD-TS  153 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~---~~~~~L~~l~~~~~~~~~a~~~----~~~~~~~~~~~~~~-~~  153 (401)
                      .+++.+|.+|..+|++++|+..|+++++++|++.   .++..+..+.........+...    ....+..+|+.+.. .|
T Consensus        95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  174 (450)
T 2y4t_A           95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV  174 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999998   7777775553332222221110    01345557777776 56


Q ss_pred             CChhHHHHHHHHHHHhhhcchhhHH
Q psy4703         154 APMDKRVTAVNNLVVLAREMSGAEM  178 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~~~~gae~  178 (401)
                      .+.......+..+...++.+.+.+.
T Consensus       175 ~~~~~~~~l~~~~~~~g~~~~A~~~  199 (450)
T 2y4t_A          175 WDAELRELRAECFIKEGEPRKAISD  199 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCGGGGHHH
T ss_pred             CChHHHHHHHHHHHHCCCHHHHHHH
Confidence            6677777777778888886554433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.63  E-value=1.1e-14  Score=135.41  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=107.9

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD--   80 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~--   80 (401)
                      ..+|.++..++..|..++..|+|++|+..|+++++.. |+.+....+++++|.+|+++|+|++|+..|+++++++|++  
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            4567889999999999999999999999999999999 8756669999999999999999999999999999998854  


Q ss_pred             -HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          81 -PKALFRRCQAYEA--------IGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        81 -~kA~~~~a~a~~~--------lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                       +.+++.+|.++..        +|++++|+..|+++++.+|+++.+...+
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  137 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT  137 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence             7799999999999        9999999999999999999998877443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.62  E-value=2.9e-14  Score=129.05  Aligned_cols=124  Identities=15%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .+|.+...+...|..++..|++++|+.+|.++++.+ |+   ...++.++|.+|..+|++++|+..++++++.+|.++.+
T Consensus        52 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  127 (243)
T 2q7f_A           52 ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SS---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL  127 (243)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHH
T ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cc---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Confidence            344445555555555555555555555555555555 43   44555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      ++.+|.++..+|++++|+..|+++++++|++..+...++.++...++.
T Consensus       128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A          128 FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence            555555555555555555555555555555555555555554444443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.62  E-value=1.3e-14  Score=134.84  Aligned_cols=153  Identities=12%  Similarity=0.166  Sum_probs=125.9

Q ss_pred             ccCChhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH--------cCCHHHHHHHH
Q psy4703           2 IDNNMND---YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK--------QNQNDKVIEDC   70 (401)
Q Consensus         2 i~~~p~~---a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k--------lg~y~~Ai~~~   70 (401)
                      ++.+|.+   +.+++..|..++..|+|++|+..|++++++. |+++....+++++|.+|+.        +|++++|+..|
T Consensus        42 l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~  120 (261)
T 3qky_A           42 FTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAF  120 (261)
T ss_dssp             GGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHH
T ss_pred             HHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence            4566777   8999999999999999999999999999999 8767789999999999999        99999999999


Q ss_pred             HHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHHH
Q psy4703          71 SKSLEIVPDDPKAL-----------------FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTK  130 (401)
Q Consensus        71 ~kAL~ldP~~~kA~-----------------~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~---~~~~~L~~l~~~~~~  130 (401)
                      +++++.+|++..+.                 +.+|.+|..+|+|++|+..|+++++.+|+++   .++..++.++..++.
T Consensus       121 ~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~  200 (261)
T 3qky_A          121 QLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE  200 (261)
T ss_dssp             HHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence            99999999986665                 8999999999999999999999999999854   567777777776632


Q ss_pred             HHH---HHHHHHHHHHHHHHHhhcCCCCh
Q psy4703         131 RMQ---ENEQLQNKVHNMFKYVFDTSAPM  156 (401)
Q Consensus       131 ~~~---a~~~~~~~~~~~~~~~~~~~~~~  156 (401)
                      ...   ....+ ..+..+|+.+....++.
T Consensus       201 ~~~~~~~~~~~-~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          201 QSVRARQPERY-RRAVELYERLLQIFPDS  228 (261)
T ss_dssp             TSCGGGHHHHH-HHHHHHHHHHHHHCTTC
T ss_pred             cchhhcccchH-HHHHHHHHHHHHHCCCC
Confidence            210   00011 33555788887733333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.62  E-value=1e-14  Score=119.90  Aligned_cols=117  Identities=16%  Similarity=0.162  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFR   86 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~   86 (401)
                      +.++..|..++..|+|++|+..|.++++.. |+.+....+++++|.+|+.+|+|++|+..|++++..+|++   +.+++.
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            457889999999999999999999999999 8755566899999999999999999999999999999999   999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      +|.++..+|++++|+..|+++++.+|+++.+.....++...
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999998877766665543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.62  E-value=5e-15  Score=123.94  Aligned_cols=116  Identities=11%  Similarity=0.155  Sum_probs=100.5

Q ss_pred             HHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          34 KALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        34 ~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                      ++..++ |+   .+..+.++|.+|++.|+|++|+..|+++|+++|.++.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus         4 r~a~in-P~---~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A            4 RLAYIN-PE---LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             ---CCC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHC-HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            445567 54   99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHH
Q psy4703         114 NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (401)
Q Consensus       114 ~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (401)
                      +..++..++.++..+++..++..        .|+.++. .|.+.+.+..
T Consensus        80 ~~~a~~~lg~~~~~~~~~~~A~~--------~~~~al~l~P~~~~a~~~  120 (126)
T 4gco_A           80 FIKGYIRKAACLVAMREWSKAQR--------AYEDALQVDPSNEEAREG  120 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHCcCCHHHHHH
Confidence            99999999999999988855544        7888887 5555544433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.62  E-value=3.2e-14  Score=139.20  Aligned_cols=161  Identities=16%  Similarity=0.124  Sum_probs=123.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++.+|+....+...|..+...|++++|+..|.++++.+ |+   ...+|.++|.+|...|++++|+..|+++++++|+++
T Consensus       128 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  203 (388)
T 1w3b_A          128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN---FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL  203 (388)
T ss_dssp             HHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            34577778888888888888888888888888888888 65   777888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV  160 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (401)
                      .+++.+|.++...|++++|+..|++++.++|++..++..++.++...++..++..        +|+.+.. .|.......
T Consensus       204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--------~~~~al~~~p~~~~~~~  275 (388)
T 1w3b_A          204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID--------TYRRAIELQPHFPDAYC  275 (388)
T ss_dssp             HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHTCSSCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHhhCCCCHHHHH
Confidence            8888888888888888888888888888888888888888888877777654433        5666666 344455555


Q ss_pred             HHHHHHHHhhhcch
Q psy4703         161 TAVNNLVVLAREMS  174 (401)
Q Consensus       161 ~a~~~L~~l~~~~~  174 (401)
                      .....+...++.++
T Consensus       276 ~l~~~~~~~g~~~~  289 (388)
T 1w3b_A          276 NLANALKEKGSVAE  289 (388)
T ss_dssp             HHHHHHHHHSCHHH
T ss_pred             HHHHHHHHcCCHHH
Confidence            55556666666543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.62  E-value=1.1e-14  Score=118.54  Aligned_cols=120  Identities=27%  Similarity=0.342  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----   80 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-----   80 (401)
                      |+.+..+...|..++..|+|++|+.+|.+++..+ |.   +..++.++|.+|...|+|++|+.+|++++.++|.+     
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELD-PT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            4678899999999999999999999999999999 76   78999999999999999999999999999999877     


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703          81 --PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus        81 --~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~  130 (401)
                        +.+++++|.++..+|++++|+..|+++++++| ++.+...++.+...+++
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence              99999999999999999999999999999999 67888888777766554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=4.5e-15  Score=123.26  Aligned_cols=104  Identities=12%  Similarity=0.061  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      ...++..|..++..|++++|+..|+++++++ |+   +..+|+++|.++..+|++++|+..|+++++++|+++.+++.+|
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKE-PE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3467899999999999999999999999999 77   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~  116 (401)
                      .+|..+|++++|+..|+++++++|++..
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           93 VSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999998754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.61  E-value=2.1e-14  Score=136.42  Aligned_cols=106  Identities=26%  Similarity=0.377  Sum_probs=102.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      |..+..++..|+.++..|+|++|+.+|++++.++ |+   +..+++++|.+|+++|+|++|+.+|+++++++|+++.+++
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   76 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5678899999999999999999999999999999 76   8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~  115 (401)
                      ++|.+|..+|++++|+..|+++++++|+++
T Consensus        77 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           77 FLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            999999999999999999999999999774

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.61  E-value=7.8e-13  Score=125.76  Aligned_cols=209  Identities=15%  Similarity=0.175  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      +++.+...|+.++..|+|++|+.+|+++++.+ |+   +..+++++|.+|+.+|++++|+..|+++++++|+++.+++.+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   77 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR   77 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            57889999999999999999999999999999 76   789999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCC---CCccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhc-CCCChhHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEP---TNKAIQPVLSRLFAIVTKRMQENEQ----LQNKVHNMFKYVFD-TSAPMDKR  159 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P---~~~~~~~~L~~l~~~~~~~~~a~~~----~~~~~~~~~~~~~~-~~~~~~~~  159 (401)
                      |.++..+|++++|+..|+++++++|   ++..+...++.+.........+...    ....+..+|+.+.. .|.+....
T Consensus        78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  157 (359)
T 3ieg_A           78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR  157 (359)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence            9999999999999999999999999   8888888775443332222211110    01345557777777 56666777


Q ss_pred             HHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhc-cCchhHHhhH--HHHHHHHHHhcHHHHHHHHcCCChh
Q psy4703         160 VTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKC-ETNEEIYLGE--EDFITSIIKQGVDILKRLYMSKNEN  229 (401)
Q Consensus       160 ~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~-~~~~e~~lA~--e~fi~~i~~~gv~~Lk~l~~s~~d~  229 (401)
                      ...+..+...++.+.+.         ..+.+.+.. ..+++.....  -.+-.+..+.++..+.+.+...++.
T Consensus       158 ~~~~~~~~~~~~~~~A~---------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  221 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAI---------SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH  221 (359)
T ss_dssp             HHHHHHHHHTTCHHHHH---------HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHCCCHHHHH---------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence            77777777777754433         333333332 1233332111  1111334566677777777744443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.61  E-value=5.1e-14  Score=132.92  Aligned_cols=217  Identities=9%  Similarity=0.045  Sum_probs=160.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g-~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      ++.+|.++..+...|..++..| ++++|+.+|.++++++ |+   ...++.++|.+|...|++++|+..++++++++|++
T Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  158 (330)
T 3hym_B           83 VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC  158 (330)
T ss_dssp             HHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC
T ss_pred             HHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc
Confidence            3457888889999999999999 9999999999999999 76   77889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT--------  152 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------  152 (401)
                      ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++..++..        +|+.+...        
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~--------~~~~a~~~~~~~~~~~  230 (330)
T 3hym_B          159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK--------WFLDALEKIKAIGNEV  230 (330)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHHTTTSCSC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH--------HHHHHHHHhhhccccc
Confidence            99999999999999999999999999999999999999999999888887766555        34444331        


Q ss_pred             --CCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhc-cCchhHHhh--HHHHHHHHHHhcHHHHHHHHcCCC
Q psy4703         153 --SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKC-ETNEEIYLG--EEDFITSIIKQGVDILKRLYMSKN  227 (401)
Q Consensus       153 --~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~-~~~~e~~lA--~e~fi~~i~~~gv~~Lk~l~~s~~  227 (401)
                        +.........+..+...++.+.+.+.         +.+.++. ..+++....  .-.+-.+..+.+...+.+.+...+
T Consensus       231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~---------~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (330)
T 3hym_B          231 TVDKWEPLLNNLGHVCRKLKKYAEALDY---------HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR  301 (330)
T ss_dssp             TTTTCCHHHHHHHHHHHHTTCHHHHHHH---------HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred             cccHHHHHHHHHHHHHHHhcCHHHHHHH---------HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence              33345556666666676765433332         2333321 123333211  111124446677788888887655


Q ss_pred             hhHHHHHHHhhh
Q psy4703         228 ENIRVRALVGLC  239 (401)
Q Consensus       228 d~i~~ralvgLc  239 (401)
                      +....+...+.|
T Consensus       302 ~~~~~~~~l~~~  313 (330)
T 3hym_B          302 DDTFSVTMLGHC  313 (330)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CchHHHHHHHHH
Confidence            555554444444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.60  E-value=3.6e-14  Score=131.06  Aligned_cols=160  Identities=9%  Similarity=0.045  Sum_probs=122.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++.+|+++..+...|..++..|+|++|+.+|.++++.. ++......+|.++|.+|..+|++++|+..|+++++++|.++
T Consensus        30 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~  108 (272)
T 3u4t_A           30 EAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL  108 (272)
T ss_dssp             HHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence            45677777788888888888888888888888888833 33333467788889999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS-RLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~-~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (401)
                      .+++.+|.+|..+|++++|+..|+++++++|++..++..++ .++... +.        ..+..+|+.+.. .|......
T Consensus       109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~--------~~A~~~~~~a~~~~p~~~~~~  179 (272)
T 3u4t_A          109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-EY--------VKADSSFVKVLELKPNIYIGY  179 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-CH--------HHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHHHhCccchHHH
Confidence            88999999999999999999999999888888888888887 544433 33        334446777776 55555555


Q ss_pred             HHHHHHHHHhhh
Q psy4703         160 VTAVNNLVVLAR  171 (401)
Q Consensus       160 ~~a~~~L~~l~~  171 (401)
                      ......+..+++
T Consensus       180 ~~~~~~~~~~~~  191 (272)
T 3u4t_A          180 LWRARANAAQDP  191 (272)
T ss_dssp             HHHHHHHHHHST
T ss_pred             HHHHHHHHHcCc
Confidence            566666666655

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.60  E-value=6.6e-14  Score=124.67  Aligned_cols=161  Identities=14%  Similarity=0.012  Sum_probs=136.4

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      +.+|.++..+...|..++..|++++|+..|.++++.+ |+   ...++..+|.+|...|++++|+..++++++++|.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   77 (225)
T 2vq2_A            2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE   77 (225)
T ss_dssp             --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-cc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            4578999999999999999999999999999999999 76   7889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhH
Q psy4703          83 ALFRRCQAYEAI-GKFEEAYTDAKHIHR--VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (401)
Q Consensus        83 A~~~~a~a~~~l-g~~eeA~~~~~kal~--l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~  158 (401)
                      +++.+|.++... |++++|+..|+++++  .+|.+..++..++.++...++..++.        .+|+.+.. .|.+...
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~--------~~~~~~~~~~~~~~~~  149 (225)
T 2vq2_A           78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE--------AYLKRSLAAQPQFPPA  149 (225)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH--------HHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH--------HHHHHHHHhCCCCchH
Confidence            999999999999 999999999999999  56666778888888888777765443        36666666 5555666


Q ss_pred             HHHHHHHHHHhhhcchh
Q psy4703         159 RVTAVNNLVVLAREMSG  175 (401)
Q Consensus       159 ~~~a~~~L~~l~~~~~g  175 (401)
                      ....+..+...++.+.+
T Consensus       150 ~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A          150 FKELARTKMLAGQLGDA  166 (225)
T ss_dssp             HHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHcCCHHHH
Confidence            66666666666665443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.60  E-value=2.7e-14  Score=138.30  Aligned_cols=157  Identities=17%  Similarity=0.203  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      ++..+...|..++..|+|++|+.+|+++++.+ |+   +..++.++|.+|..+|++++|+..|+++++++|+++.+++.+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  139 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PG---DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL  139 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            34456777777777777777777777777777 55   566777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCC--------------------------------------------C--CccHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEP--------------------------------------------T--NKAIQPVL  121 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P--------------------------------------------~--~~~~~~~L  121 (401)
                      |.+|..+|++++|+..|+++++++|                                            +  ++.++..+
T Consensus       140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            7777777777776666666665544                                            3  56677778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhhhcchhh
Q psy4703         122 SRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGA  176 (401)
Q Consensus       122 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~ga  176 (401)
                      +.++...++..++..        +|+.++. .|.+..........+...++.+.+.
T Consensus       220 ~~~~~~~g~~~~A~~--------~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  267 (365)
T 4eqf_A          220 GVLFHLSGEFNRAID--------AFNAALTVRPEDYSLWNRLGATLANGDRSEEAV  267 (365)
T ss_dssp             HHHHHHHTCHHHHHH--------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHH--------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            888777777654443        5666665 4555566666666666666665443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.60  E-value=3.2e-15  Score=129.83  Aligned_cols=116  Identities=7%  Similarity=-0.033  Sum_probs=104.7

Q ss_pred             HHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4703          30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (401)
Q Consensus        30 ~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~  109 (401)
                      ..|.+++.++ |+   +..+++++|.++++.|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+|+++++
T Consensus        23 ~~l~~al~l~-p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           23 ATLKDINAIP-DD---MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             CCTGGGCCSC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHhCCC-HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            4577888888 65   9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChh
Q psy4703         110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMD  157 (401)
Q Consensus       110 l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  157 (401)
                      ++|+++.++..++.++..+++..++..        +|++++...++.+
T Consensus        99 l~P~~~~~~~~lg~~~~~lg~~~eA~~--------~~~~al~l~~~~~  138 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRLKAPLKAKE--------CFELVIQHSNDEK  138 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCCCHH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCCHH
Confidence            999999999999999999999865554        7777777444444

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.59  E-value=2.2e-14  Score=140.36  Aligned_cols=163  Identities=12%  Similarity=0.075  Sum_probs=138.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      +..+|+.+..+...|..+...|++++|+..|+++++++ |+   ...++.++|.++...|++++|+..|.+++.++|+++
T Consensus       162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  237 (388)
T 1w3b_A          162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN---FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA  237 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence            45678889999999999999999999999999999999 76   788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV  160 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (401)
                      .+++.+|.++...|++++|+..|+++++++|+++.++..++.++...++..++..        +|+.+.. .|.+.....
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--------~~~~al~~~p~~~~~~~  309 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED--------CYNTALRLCPTHADSLN  309 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHH--------HHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHhhCcccHHHHH
Confidence            9999999999999999999999999999999999999999999888888755544        5666665 455556666


Q ss_pred             HHHHHHHHhhhcchhh
Q psy4703         161 TAVNNLVVLAREMSGA  176 (401)
Q Consensus       161 ~a~~~L~~l~~~~~ga  176 (401)
                      .....+...++.+.+.
T Consensus       310 ~l~~~~~~~g~~~~A~  325 (388)
T 1w3b_A          310 NLANIKREQGNIEEAV  325 (388)
T ss_dssp             HHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHH
Confidence            6666666666665443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.59  E-value=5.3e-14  Score=128.49  Aligned_cols=164  Identities=12%  Similarity=0.097  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK---AL   84 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k---A~   84 (401)
                      +++.++..|..++..|+|++|+..|++++... |+.+....+++++|.+|+++|+|++|+..|+++++.+|+++.   ++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence            46789999999999999999999999999999 876667889999999999999999999999999999999865   89


Q ss_pred             HHHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH----------HH
Q psy4703          85 FRRCQAYEA------------------IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE----------NE  136 (401)
Q Consensus        85 ~~~a~a~~~------------------lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a----------~~  136 (401)
                      +.+|.++..                  +|++++|+..|+++++.+|+++.+...+.++..........          ..
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~  161 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG  161 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999987                  57999999999999999999987766544433332211110          01


Q ss_pred             HHHHHHHHHHHHhhc-CCCCh---hHHHHHHHHHHHhhhcc
Q psy4703         137 QLQNKVHNMFKYVFD-TSAPM---DKRVTAVNNLVVLAREM  173 (401)
Q Consensus       137 ~~~~~~~~~~~~~~~-~~~~~---~~~~~a~~~L~~l~~~~  173 (401)
                      .+ ..+...|+.++. .|.+.   +.......++..+++.+
T Consensus       162 ~~-~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          162 AW-VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA  201 (225)
T ss_dssp             CH-HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cH-HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence            11 234556777766 33332   34455555666666643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.59  E-value=6.2e-14  Score=120.60  Aligned_cols=159  Identities=15%  Similarity=0.128  Sum_probs=135.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      ....+..+...|..++..|++++|+..|+++++.. |.   ...++..+|.++...|++++|+..++++++.+|.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   79 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AF---DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA   79 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            34567888999999999999999999999999999 76   788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~  163 (401)
                      +.+|.++...|++++|+..++++++.+|++..+...++.++...++..++..        +|+.+.. .+.+.......+
T Consensus        80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~--------~~~~~~~~~~~~~~~~~~la  151 (186)
T 3as5_A           80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID--------SFKIALGLRPNEGKVHRAIA  151 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH--------HHHHHHhcCccchHHHHHHH
Confidence            9999999999999999999999999999999999999998888777654444        5666665 455555666666


Q ss_pred             HHHHHhhhcchh
Q psy4703         164 NNLVVLAREMSG  175 (401)
Q Consensus       164 ~~L~~l~~~~~g  175 (401)
                      ..+...++.+.+
T Consensus       152 ~~~~~~~~~~~A  163 (186)
T 3as5_A          152 FSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHH
Confidence            666666665433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.59  E-value=9.8e-15  Score=149.06  Aligned_cols=162  Identities=13%  Similarity=0.067  Sum_probs=137.3

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDY-ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y-~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ...|..+..+...|..++..|+| ++|+.+|+++++++ |+   +..+|+++|.+|+.+|+|++|+.+|+++++++|+ .
T Consensus        96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~  170 (474)
T 4abn_A           96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PE---LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K  170 (474)
T ss_dssp             TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H
T ss_pred             ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H
Confidence            45677888999999999999999 99999999999999 76   7889999999999999999999999999999998 7


Q ss_pred             HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAI---------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV--------TKRMQENEQLQNKVHN  144 (401)
Q Consensus        82 kA~~~~a~a~~~l---------g~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~--------~~~~~a~~~~~~~~~~  144 (401)
                      .+++++|.+|..+         |++++|+..|+++++++|++..++..++.++...        ++..++..        
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~--------  242 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS--------  242 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH--------
Confidence            9999999999999         9999999999999999999999999999998888        77777766        


Q ss_pred             HHHHhhc-CC---CChhHHHHHHHHHHHhhhcchhhH
Q psy4703         145 MFKYVFD-TS---APMDKRVTAVNNLVVLAREMSGAE  177 (401)
Q Consensus       145 ~~~~~~~-~~---~~~~~~~~a~~~L~~l~~~~~gae  177 (401)
                      +|+.++. .|   .........+..+..+++++++.+
T Consensus       243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~  279 (474)
T 4abn_A          243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE  279 (474)
T ss_dssp             HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            5666666 45   566777777777777777765543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.59  E-value=6e-14  Score=112.90  Aligned_cols=119  Identities=28%  Similarity=0.449  Sum_probs=109.3

Q ss_pred             ChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           5 NMND-YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         5 ~p~~-a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      +|.. +..+...|..++..|++++|+..|.+++... |+   ...++.++|.++...|++++|+..++++++.+|.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   79 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA   79 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence            4544 7889999999999999999999999999999 76   78899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      ++.+|.++..+|++++|+..|+++++++|+++.+...++.++..
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999988888776543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.59  E-value=2.1e-14  Score=146.60  Aligned_cols=114  Identities=17%  Similarity=0.066  Sum_probs=103.6

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy4703          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN-DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA  100 (401)
Q Consensus        22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y-~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA  100 (401)
                      .+.+++|+..+.++.... |.   .+.+++++|.+|...|+| ++|+..|+++++++|+++.+|+.+|.+|..+|++++|
T Consensus        81 ~~~~~~al~~l~~~~~~~-~~---~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  156 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSA-QV---EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA  156 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CC---CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccC-ch---hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            345788999999988888 65   899999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCccHHHHHHHHHHHH---------HHHHHHHHHHHH
Q psy4703         101 YTDAKHIHRVEPTNKAIQPVLSRLFAIV---------TKRMQENEQLQN  140 (401)
Q Consensus       101 ~~~~~kal~l~P~~~~~~~~L~~l~~~~---------~~~~~a~~~~~~  140 (401)
                      +..|+++++++|+ ..++..++.++...         ++..++...+.+
T Consensus       157 ~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~  204 (474)
T 4abn_A          157 HTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL  204 (474)
T ss_dssp             HHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH
Confidence            9999999999999 68899999999888         888877765543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=2.1e-13  Score=124.59  Aligned_cols=160  Identities=16%  Similarity=0.142  Sum_probs=137.1

Q ss_pred             CChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           4 NNMND-YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         4 ~~p~~-a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      .+|.. +..+...|..++..|++++|+.+|+++++.+ |+   ...++.++|.+|...|++++|+..++++++.+|.+..
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  106 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PS---SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR  106 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH
Confidence            46766 8999999999999999999999999999999 76   7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHR--VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~--l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (401)
                      +++.+|.++..+|++++|+..|+++++  .+|.+..++..++.++...++..++..        +|+.+.. .+......
T Consensus       107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--------~~~~~~~~~~~~~~~~  178 (252)
T 2ho1_A          107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE--------YFEKSLRLNRNQPSVA  178 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCSCCHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHhcCcccHHHH
Confidence            999999999999999999999999999  888888888888888888777654443        6666666 45556666


Q ss_pred             HHHHHHHHHhhhcchh
Q psy4703         160 VTAVNNLVVLAREMSG  175 (401)
Q Consensus       160 ~~a~~~L~~l~~~~~g  175 (401)
                      ...+..+...++.+.+
T Consensus       179 ~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          179 LEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCHHHH
Confidence            6666666666665433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.59  E-value=1.9e-14  Score=130.15  Aligned_cols=118  Identities=19%  Similarity=0.234  Sum_probs=101.4

Q ss_pred             ccCChhHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHH
Q psy4703           2 IDNNMNDYNKLKE----------------SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK   65 (401)
Q Consensus         2 i~~~p~~a~~l~~----------------~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~   65 (401)
                      ++.+|+++..+..                .|..++..|+|++|+..|+++++++ |+   +..+++++|.+|+.+|++++
T Consensus        31 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~  106 (208)
T 3urz_A           31 IALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN---NVDCLEACAEMQVCRGQEKD  106 (208)
T ss_dssp             HHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHH
Confidence            4568899999988                9999999999999999999999999 77   89999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------------------------------CCHHHHHHHHHHHHhh
Q psy4703          66 VIEDCSKSLEIVPDDPKALFRRCQAYEAI-----------------------------------GKFEEAYTDAKHIHRV  110 (401)
Q Consensus        66 Ai~~~~kAL~ldP~~~kA~~~~a~a~~~l-----------------------------------g~~eeA~~~~~kal~l  110 (401)
                      |+.+|+++++++|+++.+++++|.+|...                                   |+|++|+.+|++++++
T Consensus       107 A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          107 ALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999999999999999988887543                                   4577788888888888


Q ss_pred             CCCCccHHHHHHHH
Q psy4703         111 EPTNKAIQPVLSRL  124 (401)
Q Consensus       111 ~P~~~~~~~~L~~l  124 (401)
                      +|++ .+...+.++
T Consensus       187 ~P~~-~~~~~l~~i  199 (208)
T 3urz_A          187 FPST-EAQKTLDKI  199 (208)
T ss_dssp             SCCH-HHHHHHHHH
T ss_pred             CCCH-HHHHHHHHH
Confidence            8863 333444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.2e-13  Score=125.66  Aligned_cols=103  Identities=22%  Similarity=0.315  Sum_probs=96.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----   80 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-----   80 (401)
                      +..++.+...|..++..|+|++|+.+|+++++.+ +    +..++.++|.+|..+|+|++|+..+.++++++|.+     
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   76 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK   76 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence            5678999999999999999999999999999998 4    57899999999999999999999999999999977     


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          81 --PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        81 --~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                        +.+++.+|.++..+|++++|+..|+++++++|+
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  111 (258)
T 3uq3_A           77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT  111 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch
Confidence              799999999999999999999999999996654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.58  E-value=7.1e-14  Score=127.81  Aligned_cols=159  Identities=9%  Similarity=0.075  Sum_probs=136.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE--IVPD   79 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~--ldP~   79 (401)
                      ++.+|..+..+...|..++..|++++|+.+|.++++.. |+   ...++.++|.+|...|++++|+..+++++.  .+|.
T Consensus        64 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  139 (252)
T 2ho1_A           64 LEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR---NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE  139 (252)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT
T ss_pred             HhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc
Confidence            34578889999999999999999999999999999999 76   788999999999999999999999999999  8899


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhH
Q psy4703          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (401)
Q Consensus        80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~  158 (401)
                      ++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.++...++..++.        .+|+.+.. .+.....
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--------~~~~~~~~~~~~~~~~  211 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR--------QYYDLFAQGGGQNARS  211 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH--------HHHHHHHTTSCCCHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH--------HHHHHHHHhCcCcHHH
Confidence            99999999999999999999999999999999999999999999988887775443        46777776 4444444


Q ss_pred             HHHHHHHHHHhhhc
Q psy4703         159 RVTAVNNLVVLARE  172 (401)
Q Consensus       159 ~~~a~~~L~~l~~~  172 (401)
                      .......+...++.
T Consensus       212 ~~~~~~~~~~~g~~  225 (252)
T 2ho1_A          212 LLLGIRLAKVFEDR  225 (252)
T ss_dssp             HHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHccCH
Confidence            45555555555554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.58  E-value=9.6e-14  Score=134.41  Aligned_cols=111  Identities=13%  Similarity=0.025  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhhcCCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4703          27 TALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAK  105 (401)
Q Consensus        27 eAi~~y~~Al~l~~p~~-~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~  105 (401)
                      .++..+..+.... +.+ ......++++|.++++.|+|++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..|+
T Consensus        45 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  123 (365)
T 4eqf_A           45 VTVSASEKGYYFH-TENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ  123 (365)
T ss_dssp             --------CCCCC-SSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhHHHHHhhhcc-cCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4555667767666 432 23556799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy4703         106 HIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQL  138 (401)
Q Consensus       106 kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~  138 (401)
                      ++++++|++..++..++.++...++..++...+
T Consensus       124 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  156 (365)
T 4eqf_A          124 RCLELQPNNLKALMALAVSYTNTSHQQDACEAL  156 (365)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHccccHHHHHHHH
Confidence            999999999999999999999888777766544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.57  E-value=1.1e-13  Score=119.03  Aligned_cols=131  Identities=15%  Similarity=0.204  Sum_probs=122.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      +..+|.++..+...|..++..|++++|+.+|.++++.. |+   ...++.++|.++...|++++|+..+++++..+|.++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  110 (186)
T 3as5_A           35 YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PD---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF  110 (186)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH
Confidence            56778889999999999999999999999999999999 76   788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      .+++.+|.++..+|++++|+..++++++.+|++..+...++.++...++..++..
T Consensus       111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A          111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999999999988887755544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.57  E-value=4.4e-13  Score=126.41  Aligned_cols=122  Identities=15%  Similarity=0.229  Sum_probs=61.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      +.+...+...|..++..|+|++|+..|+++++.+ |.   +..++..++.++..+|++++|+..++++++.+|.++.+++
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   94 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PF---HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF   94 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence            3344445555555555555555555555555555 43   3334444444455555555555555555555555555555


Q ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          86 RRCQAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        86 ~~a~a~~~lg-~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      .+|.++...| ++++|+..|+++++++|++..++..++.++...++.
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  141 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH  141 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH
Confidence            5555555555 455555555555555555544444444444444444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.57  E-value=6.3e-14  Score=122.25  Aligned_cols=120  Identities=18%  Similarity=0.191  Sum_probs=110.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAV-YLKQNQN--DKVIEDCSKSLEIVP   78 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~-y~klg~y--~~Ai~~~~kAL~ldP   78 (401)
                      +..+|.++..+...|..++..|+|++|+.+|.++++++ |+   +..++.++|.+ |+..|++  ++|+..++++++++|
T Consensus        37 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p  112 (177)
T 2e2e_A           37 IRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GE---NAELYAALATVLYYQASQHMTAQTRAMIDKALALDS  112 (177)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CS---CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC
Confidence            45678899999999999999999999999999999999 76   78899999999 8899999  999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      +++.+++.+|.+|..+|++++|+..|+++++++|++......+..+.
T Consensus       113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~  159 (177)
T 2e2e_A          113 NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN  159 (177)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            99999999999999999999999999999999999987666554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.57  E-value=6.2e-15  Score=157.34  Aligned_cols=153  Identities=14%  Similarity=0.036  Sum_probs=135.6

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      +.+|+++..+...|..++..|+|++|+..|+++++++ |+   +..+|+++|.+|+.+|+|++|+.+|+++++++|+++.
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  502 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GW---RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA  502 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            5679999999999999999999999999999999999 77   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT-SAPMDKRVT  161 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~  161 (401)
                      +++++|.+|..+|+|++ +.+|+++++++|++..++..++.++..+++..++..        .|+.+... |........
T Consensus       503 ~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~--------~~~~al~l~P~~~~a~~~  573 (681)
T 2pzi_A          503 PKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR--------TLDEVPPTSRHFTTARLT  573 (681)
T ss_dssp             HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHTSCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH--------HHHhhcccCcccHHHHHH
Confidence            99999999999999999 999999999999999999999999999888755444        78888884 444455555


Q ss_pred             HHHHHHH
Q psy4703         162 AVNNLVV  168 (401)
Q Consensus       162 a~~~L~~  168 (401)
                      ....++.
T Consensus       574 ~~~~~~~  580 (681)
T 2pzi_A          574 SAVTLLS  580 (681)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHHc
Confidence            5444433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.57  E-value=1e-13  Score=123.42  Aligned_cols=138  Identities=14%  Similarity=0.059  Sum_probs=125.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLE--IVP   78 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl-g~y~~Ai~~~~kAL~--ldP   78 (401)
                      ++.+|.....+...|..+...|++++|+.+|.++++.+ |+   ...++.++|.+|... |++++|+..++++++  .+|
T Consensus        35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (225)
T 2vq2_A           35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PD---SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP  110 (225)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred             HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence            34578889999999999999999999999999999999 76   788999999999999 999999999999999  677


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .+..+++.+|.++..+|++++|+..|+++++.+|++..++..++.++...++..++..        +|+.+..
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--------~~~~~~~  175 (225)
T 2vq2_A          111 TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY--------YFKKYQS  175 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH--------HHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH--------HHHHHHH
Confidence            7799999999999999999999999999999999999999999999988887755544        5666665

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.56  E-value=1.6e-14  Score=114.53  Aligned_cols=107  Identities=13%  Similarity=0.232  Sum_probs=102.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DPK   82 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~--~~k   82 (401)
                      +|+++..+...|..++..|+|++|+.+|+++++++ |+   ...++.++|.+|+.+|+|++|+..++++++++|.  +..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   77 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD   77 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH
Confidence            67788889999999999999999999999999999 76   7889999999999999999999999999999999  999


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCc
Q psy4703          83 ALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTNK  115 (401)
Q Consensus        83 A~~~~a~a~~~l-g~~eeA~~~~~kal~l~P~~~  115 (401)
                      +++.+|.++..+ |++++|+.++++++..+|.++
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            999999999999 999999999999999999875

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.56  E-value=1.7e-13  Score=122.42  Aligned_cols=133  Identities=15%  Similarity=0.137  Sum_probs=118.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      ...+..++..|+.++..|+|++|+.+|++++  + |    .+.+++++|.+|..+|+|++|+..|+++++++|+++.+++
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   75 (213)
T 1hh8_A            3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--D-P----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF   75 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--S-C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--C-C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence            3466788999999999999999999999985  4 4    4679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCc----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNK----------------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV  149 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~----------------~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~  149 (401)
                      ++|.+|..+|+|++|+.+|++++++.|++.                .++..++.++...++..++.        .+|+.+
T Consensus        76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--------~~~~~a  147 (213)
T 1hh8_A           76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE--------EQLALA  147 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH--------HHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH--------HHHHHH
Confidence            999999999999999999999999999887                88889999988888775444        477888


Q ss_pred             hcCC
Q psy4703         150 FDTS  153 (401)
Q Consensus       150 ~~~~  153 (401)
                      ....
T Consensus       148 l~~~  151 (213)
T 1hh8_A          148 TSMK  151 (213)
T ss_dssp             HTTC
T ss_pred             HHcC
Confidence            7733

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=9.6e-14  Score=125.57  Aligned_cols=204  Identities=13%  Similarity=0.111  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      .+..+...|..++..|+|++|+.+|+++++.+ |+   ...++.++|.+|...|++++|+..++++++.+|.+..+++.+
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   97 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KE---DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA   97 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            46788999999999999999999999999999 76   789999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL  166 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L  166 (401)
                      |.++..+|++++|+..|+++++++|.+..+...++.++...++..++..        +++.+.. .+.+.......+..+
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~--------~~~~~~~~~~~~~~~~~~l~~~~  169 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP--------YLQRAVELNENDTEARFQFGMCL  169 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHH--------HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH--------HHHHHHHhCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888877754444        6666666 455666666666677


Q ss_pred             HHhhhcchhhHHHhhhhHHHHHHHHhhc-cCchhHHhhH--HHHHHHHHHhcHHHHHHHHcCCChhHHH
Q psy4703         167 VVLAREMSGAEMLLKSGVAKQINTLLKC-ETNEEIYLGE--EDFITSIIKQGVDILKRLYMSKNENIRV  232 (401)
Q Consensus       167 ~~l~~~~~gae~~~~e~~v~~L~~ll~~-~~~~e~~lA~--e~fi~~i~~~gv~~Lk~l~~s~~d~i~~  232 (401)
                      ...++.+.+...+         .+.++. ..+++.....  -.+-.+....+...+++.++..++...+
T Consensus       170 ~~~~~~~~A~~~~---------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  229 (243)
T 2q7f_A          170 ANEGMLDEALSQF---------AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA  229 (243)
T ss_dssp             HHHTCCHHHHHHH---------HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             HHcCCHHHHHHHH---------HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence            7777754433322         222221 1223321111  1111233455677788877754444433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=5.6e-14  Score=127.86  Aligned_cols=161  Identities=14%  Similarity=0.165  Sum_probs=135.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----HERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-------   75 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~----~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~-------   75 (401)
                      .++..+...|..++..|+|++|+.+|.+++++. |+.    +....++.++|.+|..+|++++|+..++++++       
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  114 (258)
T 3uq3_A           36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADI  114 (258)
T ss_dssp             CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHH
Confidence            456788999999999999999999999999998 541    11278999999999999999999999999999       


Q ss_pred             -------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          76 -------------------IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        76 -------------------ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                                         .+|.++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++..++..
T Consensus       115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  194 (258)
T 3uq3_A          115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA  194 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence                               6777889999999999999999999999999999999999999999999988887755444


Q ss_pred             HHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhhhcchhh
Q psy4703         137 QLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGA  176 (401)
Q Consensus       137 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~ga  176 (401)
                              +|+.++. .|.........+..+..+++.+.+.
T Consensus       195 --------~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  227 (258)
T 3uq3_A          195 --------DCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL  227 (258)
T ss_dssp             --------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             --------HHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence                    6677766 5555666666677777777654433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.55  E-value=4.4e-13  Score=127.51  Aligned_cols=162  Identities=15%  Similarity=0.108  Sum_probs=141.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP---   78 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP---   78 (401)
                      ++.+|.++..+...|..++..|+|++|+..|+++++++ |+   ...++..+|.+|...|++++|+..|+++++++|   
T Consensus        30 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  105 (359)
T 3ieg_A           30 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ  105 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCccc
Confidence            45678899999999999999999999999999999999 76   789999999999999999999999999999999   


Q ss_pred             CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          79 DDPKALFRR------------CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF  146 (401)
Q Consensus        79 ~~~kA~~~~------------a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~  146 (401)
                      +++.++..+            |.++...|++++|+..|+++++.+|++..++..++.++...++..++.        .+|
T Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~--------~~~  177 (359)
T 3ieg_A          106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI--------SDL  177 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH--------HHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH--------HHH
Confidence            899998887            799999999999999999999999999999999999998888775544        367


Q ss_pred             HHhhc-CCCChhHHHHHHHHHHHhhhcchh
Q psy4703         147 KYVFD-TSAPMDKRVTAVNNLVVLAREMSG  175 (401)
Q Consensus       147 ~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g  175 (401)
                      +.+.. .|.+.......+..+...++.+.+
T Consensus       178 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  207 (359)
T 3ieg_A          178 KAASKLKSDNTEAFYKISTLYYQLGDHELS  207 (359)
T ss_dssp             HHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            77777 556666667777777777775443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.55  E-value=5.4e-13  Score=128.47  Aligned_cols=154  Identities=14%  Similarity=0.153  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      +..+...|..++..|+|++|+.+|+++++.+ |+   +..++.++|.+|...|++++|+..|+++++++|+++.+++.+|
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  139 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA  139 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5678899999999999999999999999999 76   8899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCccHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP----------------VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-  151 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~----------------~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-  151 (401)
                      .+|..+|++++|+..|++++.++|++..+..                .++.+. ..++..        .+..+|+.+.. 
T Consensus       140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~A~~~~~~a~~~  210 (368)
T 1fch_A          140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFL--------EVKELFLAAVRL  210 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHH--------HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHH--------HHHHHHHHHHHh
Confidence            9999999999999999999999999877664                344444 444443        34446777776 


Q ss_pred             CCC--ChhHHHHHHHHHHHhhhcchh
Q psy4703         152 TSA--PMDKRVTAVNNLVVLAREMSG  175 (401)
Q Consensus       152 ~~~--~~~~~~~a~~~L~~l~~~~~g  175 (401)
                      .|.  ........+..+...++.+.+
T Consensus       211 ~p~~~~~~~~~~l~~~~~~~g~~~~A  236 (368)
T 1fch_A          211 DPTSIDPDVQCGLGVLFNLSGEYDKA  236 (368)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            444  455556666666666665443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.54  E-value=9.1e-14  Score=137.84  Aligned_cols=152  Identities=19%  Similarity=0.269  Sum_probs=127.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTAEESHE-RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY   91 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~-~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~   91 (401)
                      ...|..++..|++++|+.+|++++++. |+.+. ...++.++|.++.++|++++|+..|+++++++|+++.+++.+|.++
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            344999999999999999999999999 76222 2568999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhh
Q psy4703          92 EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLA  170 (401)
Q Consensus        92 ~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~  170 (401)
                      ..+|++++|+..|+++++++|+++.++..++.+....+...         ..++|..+.. ...+.+.....++.+...+
T Consensus       340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~---------~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~  410 (450)
T 2y4t_A          340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ---------KRDYYKILGVKRNAKKQEIIKAYRKLALQW  410 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH---------SCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred             HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc---------chhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999988776655421         2234555554 3445567777888877777


Q ss_pred             hcch
Q psy4703         171 REMS  174 (401)
Q Consensus       171 ~~~~  174 (401)
                      +++.
T Consensus       411 ~pd~  414 (450)
T 2y4t_A          411 HPDN  414 (450)
T ss_dssp             CGGG
T ss_pred             CCCC
Confidence            7753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.54  E-value=3.4e-13  Score=129.82  Aligned_cols=160  Identities=12%  Similarity=0.147  Sum_probs=116.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--   79 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~--   79 (401)
                      ++.+|.++..+...|..++..|++++|+.+|.++++++ |+   +..++.++|.+|..+|++++|+..+++++.++|.  
T Consensus        91 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  166 (368)
T 1fch_A           91 VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  166 (368)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            45688899999999999999999999999999999999 76   7889999999999999998888888877776654  


Q ss_pred             -------------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          80 -------------------------------------------------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        80 -------------------------------------------------~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                                                                       ++.+++.+|.++...|++++|+..|++++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  246 (368)
T 1fch_A          167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV  246 (368)
T ss_dssp             GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                                                             4566666777777777777777777777777


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhhhcc
Q psy4703         111 EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM  173 (401)
Q Consensus       111 ~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~  173 (401)
                      +|++..++..++.++...++..++..        +|+.++. .|.........+..+...++.+
T Consensus       247 ~~~~~~~~~~l~~~~~~~g~~~~A~~--------~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  302 (368)
T 1fch_A          247 RPNDYLLWNKLGATLANGNQSEEAVA--------AYRRALELQPGYIRSRYNLGISCINLGAHR  302 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            77766666666666666655543333        4455544 3444444455555555555543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.54  E-value=9.8e-14  Score=144.01  Aligned_cols=131  Identities=13%  Similarity=0.119  Sum_probs=120.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++.+|+++..+...|..++..|+|++|+.+|+++++++ |+   +..++.++|.+|..+|++++|+..|+++++++|+++
T Consensus        16 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   91 (568)
T 2vsy_A           16 VRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PG---HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP   91 (568)
T ss_dssp             -----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence            56789999999999999999999999999999999999 76   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH---HHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV---TKRMQENE  136 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~---~~~~~a~~  136 (401)
                      .+++++|.+|..+|++++|+..|+++++++|++..++..++.++...   ++..++..
T Consensus        92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~  149 (568)
T 2vsy_A           92 GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA  149 (568)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence            99999999999999999999999999999999999999999999888   77655544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=3.8e-13  Score=123.91  Aligned_cols=114  Identities=18%  Similarity=0.076  Sum_probs=106.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      +|..+..+...|..++..|+|++|+.+|+++++++ |+   +..++.++|.+|...|+|++|+..|+++++++|.++.++
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  114 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH  114 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHH
Confidence            46789999999999999999999999999999999 76   889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~  122 (401)
                      +.+|.+|..+|++++|+..|+++++++|++......+.
T Consensus       115 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (275)
T 1xnf_A          115 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY  152 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            99999999999999999999999999999986555444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.52  E-value=4.1e-14  Score=115.83  Aligned_cols=98  Identities=14%  Similarity=0.192  Sum_probs=86.7

Q ss_pred             HcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy4703          21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA  100 (401)
Q Consensus        21 ~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA  100 (401)
                      ..|+|++|+.+|++++++. ++.|.+..+++++|.+|+.+|+|++|+..|+++++++|+++.+++++|.++..+|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            4689999999999999994 333558999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCccHHH
Q psy4703         101 YTDAKHIHRVEPTNKAIQP  119 (401)
Q Consensus       101 ~~~~~kal~l~P~~~~~~~  119 (401)
                      +..|+++++.+|+++.+..
T Consensus        81 ~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHH
Confidence            9999999999999987644

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.51  E-value=5.5e-13  Score=108.13  Aligned_cols=123  Identities=27%  Similarity=0.397  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~   89 (401)
                      ..+...|..++..|++++|+..|.++++.. |+   ....+.++|.++...|++++|+..+++++..+|.++.+++.+|.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   77 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-Cc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            467889999999999999999999999999 76   78899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        90 a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ++...|++++|+..+++++...|.+..+...++.++...++..++..
T Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  124 (136)
T 2fo7_A           78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE  124 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence            99999999999999999999999999888888888877776654433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.51  E-value=9.5e-14  Score=148.17  Aligned_cols=155  Identities=12%  Similarity=0.021  Sum_probs=135.3

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKAL--------KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL   74 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al--------~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL   74 (401)
                      ..+|.++.++...|   +..|++++|+..|++++        +.+ |+   +..+++++|.+|+.+|+|++|+..|++++
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al  460 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDF-SE---SVELPLMEVRALLDLGDVAKATRKLDDLA  460 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CC-TT---CSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhccccccccc-cc---chhHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            35677777777666   88999999999999999        888 66   88899999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC
Q psy4703          75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS  153 (401)
Q Consensus        75 ~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~  153 (401)
                      +++|+++.+|+.+|.+|..+|+|++|+.+|+++++++|++..++..++.++...++..+         ..+|+.++. .|
T Consensus       461 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~---------~~~~~~al~~~P  531 (681)
T 2pzi_A          461 ERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE---------HKFYQTVWSTND  531 (681)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT---------TCHHHHHHHHCT
T ss_pred             ccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH---------HHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999988887643         346788877 66


Q ss_pred             CChhHHHHHHHHHHHhhhcc
Q psy4703         154 APMDKRVTAVNNLVVLAREM  173 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~~~  173 (401)
                      .+..........+..+++.+
T Consensus       532 ~~~~a~~~lg~~~~~~g~~~  551 (681)
T 2pzi_A          532 GVISAAFGLARARSAEGDRV  551 (681)
T ss_dssp             TCHHHHHHHHHHHHHTTCHH
T ss_pred             chHHHHHHHHHHHHHcCCHH
Confidence            77777777777777777753

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.51  E-value=2.4e-13  Score=125.54  Aligned_cols=142  Identities=11%  Similarity=0.021  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKAL   84 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~----~kA~   84 (401)
                      .+.+...|..++..|+|++|+..|+++++.+ |+   +..++.++|.+|+.+|+|++|+..|+++++ .|.+    ..++
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~   77 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YN---SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADF   77 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHH
Confidence            4567899999999999999999999999999 76   677899999999999999999999999999 4433    5569


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~  163 (401)
                      +.+|.++..+|++++|+..|+++++++|++..++..++.++...++..++        ..+|+.++. .|..........
T Consensus        78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A--------~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA--------IQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH--------HHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHH--------HHHHHHHhhcCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999988887544        447888887 444444444433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.50  E-value=2.1e-12  Score=121.53  Aligned_cols=157  Identities=10%  Similarity=0.046  Sum_probs=127.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      .++..+...|..++..|+|++|+..|+++++.+ |+   +..++.++|.++...|++++|+..++++++++|.++.+++.
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   94 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA   94 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH
Confidence            456778999999999999999999999999999 76   88999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH--------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL--------------SR-LFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L--------------~~-l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      +|.++..+|++++|+..|+++++.+|++..+...+              +. ++...++..        .+..+++.+..
T Consensus        95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~~~~  166 (327)
T 3cv0_A           95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR--------ECRTLLHAALE  166 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH--------HHHHHHHHHHh
Confidence            99999999999999999999999999998877666              33 334444443        34446677666


Q ss_pred             -CCCChhHHHHHHHHHHHhhhcchh
Q psy4703         152 -TSAPMDKRVTAVNNLVVLAREMSG  175 (401)
Q Consensus       152 -~~~~~~~~~~a~~~L~~l~~~~~g  175 (401)
                       .|.+.......+..+...++.+.+
T Consensus       167 ~~~~~~~~~~~la~~~~~~~~~~~A  191 (327)
T 3cv0_A          167 MNPNDAQLHASLGVLYNLSNNYDSA  191 (327)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhccHHHH
Confidence             555566666666667776765433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.49  E-value=1.8e-13  Score=117.52  Aligned_cols=111  Identities=5%  Similarity=-0.066  Sum_probs=101.7

Q ss_pred             HHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703          29 LDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH  108 (401)
Q Consensus        29 i~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal  108 (401)
                      -..|++++.++ |+   +...++++|.+++..|+|++|+..|++++.++|.++.+|+.+|.++..+|+|++|+.+|++++
T Consensus         7 ~~~~~~al~~~-p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   82 (148)
T 2vgx_A            7 GGTIAMLNEIS-SD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA   82 (148)
T ss_dssp             CCSHHHHTTCC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHcCC-Hh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34688999999 65   899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703         109 RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus       109 ~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .++|+++.++..++.++..+++..++..        +|+.++.
T Consensus        83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~--------~~~~al~  117 (148)
T 2vgx_A           83 VMDIXEPRFPFHAAECLLQXGELAEAES--------GLFLAQE  117 (148)
T ss_dssp             HHSTTCTHHHHHHHHHHHHTTCHHHHHH--------HHHHHHH
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHHHH--------HHHHHHH
Confidence            9999999999999999999998866554        5666665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.49  E-value=7.2e-14  Score=121.99  Aligned_cols=100  Identities=19%  Similarity=0.150  Sum_probs=90.4

Q ss_pred             HHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703          20 FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN----------DKVIEDCSKSLEIVPDDPKALFRRCQ   89 (401)
Q Consensus        20 ~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y----------~~Ai~~~~kAL~ldP~~~kA~~~~a~   89 (401)
                      -+.+.|++|+..|+++++++ |+   ++.+|+++|.++..++++          ++|+..|++||+++|++..+|+++|.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            34567999999999999999 77   899999999999999876          59999999999999999999999999


Q ss_pred             HHHHcC-----------CHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703          90 AYEAIG-----------KFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (401)
Q Consensus        90 a~~~lg-----------~~eeA~~~~~kal~l~P~~~~~~~~L~~  123 (401)
                      +|..+|           +|++|+.+|++|++++|++......+..
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            999885           8999999999999999999766555543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.49  E-value=5.2e-13  Score=127.03  Aligned_cols=163  Identities=10%  Similarity=-0.003  Sum_probs=140.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      -|.+...+...|..+...|++++|+..|+++++++ |+   +..+++++|.+|...|++++|+..+++++..+|+....+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~  188 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG  188 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-Cc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH
Confidence            36778899999999999999999999999999999 77   889999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC--hhHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAP--MDKRVT  161 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--~~~~~~  161 (401)
                      ...+..+...+++++|+..|+++++.+|++..++..++.++...++..++..        .|..++. .|..  ...+..
T Consensus       189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~--------~l~~~l~~~p~~~~~~a~~~  260 (287)
T 3qou_A          189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALE--------LLFGHLRXDLTAADGQTRXT  260 (287)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTGGGGHHHHH
T ss_pred             HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH--------HHHHHHhcccccccchHHHH
Confidence            8888889999999999999999999999999999999999999888765544        6677766 4444  456666


Q ss_pred             HHHHHHHhhhcchhhHHH
Q psy4703         162 AVNNLVVLAREMSGAEML  179 (401)
Q Consensus       162 a~~~L~~l~~~~~gae~~  179 (401)
                      ....+..+++.+++...+
T Consensus       261 l~~~~~~~g~~~~a~~~~  278 (287)
T 3qou_A          261 FQEILAALGTGDALASXY  278 (287)
T ss_dssp             HHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHcCCCCcHHHHH
Confidence            666677777766555444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.49  E-value=4.1e-14  Score=144.93  Aligned_cols=117  Identities=26%  Similarity=0.456  Sum_probs=111.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      .++.+..+...|+.++..|+|++|+.+|++|++++ |+   +..++.++|.+|.++|+|++|+.+|+++++++|+++.++
T Consensus         2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   77 (477)
T 1wao_1            2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELN-PS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   77 (477)
T ss_dssp             CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Confidence            46678888999999999999999999999999999 76   899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      +++|.+|..+|++++|+..|+++++++|++..++..++.+.
T Consensus        78 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  118 (477)
T 1wao_1           78 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  118 (477)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888873

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.48  E-value=2.3e-13  Score=119.36  Aligned_cols=162  Identities=13%  Similarity=0.041  Sum_probs=130.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      ||...+.+...|..++..|++++|+..|+++++.+ |+   +..+++++|.+|...|++++|+..+++++..+| ++..+
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~   76 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QS---RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK   76 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH
Confidence            56666788999999999999999999999999999 76   899999999999999999999999999999999 88777


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---hhHHH
Q psy4703          85 FRRCQAYE-AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP---MDKRV  160 (401)
Q Consensus        85 ~~~a~a~~-~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~  160 (401)
                      ..++.+.. ..+...+|+..|+++++++|+++.++..++.++...++..++..        +|+.++...++   .....
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~--------~~~~~l~~~p~~~~~~a~~  148 (176)
T 2r5s_A           77 SLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE--------LLWNILKVNLGAQDGEVKK  148 (176)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHTTCTTTTTTHHHH
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH--------HHHHHHHhCcccChHHHHH
Confidence            66665533 33445568999999999999999999999999999888765544        77777774332   34566


Q ss_pred             HHHHHHHHhhhcchhhHHH
Q psy4703         161 TAVNNLVVLAREMSGAEML  179 (401)
Q Consensus       161 ~a~~~L~~l~~~~~gae~~  179 (401)
                      .....+..+|+.+++...+
T Consensus       149 ~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A          149 TFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHhCCCCcHHHHH
Confidence            6667777777766555444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.48  E-value=3.7e-13  Score=112.41  Aligned_cols=111  Identities=15%  Similarity=0.158  Sum_probs=90.4

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      +.+.++.++|.++++.|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++......++.+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999887766666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Q psy4703         125 FAIVTKRMQENEQLQNKVHNMFKYVFDTSAPM  156 (401)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  156 (401)
                      +..++........+ ..+..+|+.++...++.
T Consensus        86 ~~~lg~~~~~~~~~-~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           86 MSRAGNAFQKQNDL-SLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHhhCcCH
Confidence            55555544433333 33445677777644443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.48  E-value=4.5e-12  Score=128.29  Aligned_cols=212  Identities=11%  Similarity=0.075  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      +..+...|..++..|++++|+..|.++++++ |+    ..++.++|.+|...|++++|+..|+++++.+|+++.+++.+|
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  317 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLH-PT----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG  317 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence            5578899999999999999999999999999 64    788999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHH
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV  167 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~  167 (401)
                      .++..+|++++|+..|+++++++|++..++..++.++...++..++..        +|+.+.. .|.+..........+.
T Consensus       318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~--------~~~~~~~~~~~~~~~~~~l~~~~~  389 (537)
T 3fp2_A          318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA--------FFNETKLKFPTLPEVPTFFAEILT  389 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCCChHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998888755544        6666666 5666666677777777


Q ss_pred             HhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhh------HHHHHH----------HHHHhcHHHHHHHHcCCChhHH
Q psy4703         168 VLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLG------EEDFIT----------SIIKQGVDILKRLYMSKNENIR  231 (401)
Q Consensus       168 ~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA------~e~fi~----------~i~~~gv~~Lk~l~~s~~d~i~  231 (401)
                      ..++.+.+...+ ..     ...+.....+....++      .-.+-.          +..+.+...+.+.+...++...
T Consensus       390 ~~g~~~~A~~~~-~~-----a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  463 (537)
T 3fp2_A          390 DRGDFDTAIKQY-DI-----AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ  463 (537)
T ss_dssp             HTTCHHHHHHHH-HH-----HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhCCHHHHHHHH-HH-----HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence            777765443333 11     1111110111111111      111113          6677888999999886555554


Q ss_pred             HHHHHhhh
Q psy4703         232 VRALVGLC  239 (401)
Q Consensus       232 ~ralvgLc  239 (401)
                      +....|.|
T Consensus       464 ~~~~l~~~  471 (537)
T 3fp2_A          464 AKIGLAQL  471 (537)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.47  E-value=3e-12  Score=131.80  Aligned_cols=208  Identities=8%  Similarity=-0.007  Sum_probs=152.9

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      ...|.++..+...|..+.+.|++++|+.+|+++++++ |+   +..+|..++.+|.+.|++++|+..|+++++.+|+++.
T Consensus       367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  442 (597)
T 2xpi_A          367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ---FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL  442 (597)
T ss_dssp             HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred             hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence            4467788899999999999999999999999999999 76   7889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CCC-
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT------SAP-  155 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~-  155 (401)
                      +++.+|.+|...|++++|+..|+++++++|.++.++..++.++...++..++..        +|+.+...      .++ 
T Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--------~~~~~~~~~~~~~~~p~~  514 (597)
T 2xpi_A          443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN--------HFQNALLLVKKTQSNEKP  514 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHHHHSCCCSGG
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH--------HHHHHHHhhhccccchhh
Confidence            999999999999999999999999999999999999999999888887766555        44444331      222 


Q ss_pred             -hhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhcc-CchhHHhhHH--HHHHHHHHhcHHHHHHHHcCCChhHH
Q psy4703         156 -MDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCE-TNEEIYLGEE--DFITSIIKQGVDILKRLYMSKNENIR  231 (401)
Q Consensus       156 -~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~-~~~e~~lA~e--~fi~~i~~~gv~~Lk~l~~s~~d~i~  231 (401)
                       ..........+...++.+.+.         ..+.++++.. .++.......  .+-.+..+.+..+++++++..++...
T Consensus       515 ~~~~~~~l~~~~~~~g~~~~A~---------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  585 (597)
T 2xpi_A          515 WAATWANLGHAYRKLKMYDAAI---------DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM  585 (597)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHH---------HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHH---------HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence             344455555556666643332         2223333321 2333321111  11133456677888888875554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.47  E-value=1.1e-12  Score=119.77  Aligned_cols=135  Identities=12%  Similarity=0.152  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH------------------cCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK------------------QNQNDKVIED   69 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k------------------lg~y~~Ai~~   69 (401)
                      ...++...|..++..|+|++|+..|+++++.. |+.+....+++++|.+|..                  .|++++|+..
T Consensus        40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  118 (225)
T 2yhc_A           40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD  118 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence            35789999999999999999999999999999 8766666789999999987                  5799999999


Q ss_pred             HHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHH
Q psy4703          70 CSKSLEIVPDDPKAL-----------------FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVT  129 (401)
Q Consensus        70 ~~kAL~ldP~~~kA~-----------------~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~---~~~~~L~~l~~~~~  129 (401)
                      |+++++.+|+++.+.                 +.+|.+|...|+|++|+..|+++++..|+++   .++..++.++..++
T Consensus       119 ~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  198 (225)
T 2yhc_A          119 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQ  198 (225)
T ss_dssp             HHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcC
Confidence            999999999987654                 6789999999999999999999999999986   56777888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q psy4703         130 KRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus       130 ~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      +...+.        ++++++..
T Consensus       199 ~~~~A~--------~~~~~l~~  212 (225)
T 2yhc_A          199 MNAQAE--------KVAKIIAA  212 (225)
T ss_dssp             CHHHHH--------HHHHHHHH
T ss_pred             CcHHHH--------HHHHHHHh
Confidence            775443        36676666

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.46  E-value=3.2e-12  Score=127.78  Aligned_cols=158  Identities=13%  Similarity=0.036  Sum_probs=122.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV----   77 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld----   77 (401)
                      ..+..+...|..++..|+|++|+++|++|+++.+     ...+.....|.|+|.+|..+|+|++|+.++++++++.    
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            3466788899999999999999999999998741     1124478899999999999999999999999999873    


Q ss_pred             ----CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          78 ----PDDPKALFRRCQAYEAIG--KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        78 ----P~~~kA~~~~a~a~~~lg--~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                          +..+.++..+|.++..+|  +|++|+.+|+++++++|+++.+...++.+...++...+.     ..+.+.|++++.
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~-----~~al~~~~~al~  203 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS-----QNAIDPLRQAIR  203 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCC-----CCTHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHH-----HHHHHHHHHHhh
Confidence                456889999999988765  699999999999999999999999988887666544322     123446777776


Q ss_pred             -CCCChhHHHHHHHHHHHh
Q psy4703         152 -TSAPMDKRVTAVNNLVVL  169 (401)
Q Consensus       152 -~~~~~~~~~~a~~~L~~l  169 (401)
                       .|............+..+
T Consensus       204 l~p~~~~~~~~l~~~~~~~  222 (472)
T 4g1t_A          204 LNPDNQYLKVLLALKLHKM  222 (472)
T ss_dssp             HCSSCHHHHHHHHHHHHHC
T ss_pred             cCCcchHHHHHHHHHHHHH
Confidence             455555444444444333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.45  E-value=3.2e-13  Score=117.75  Aligned_cols=128  Identities=10%  Similarity=0.100  Sum_probs=110.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHH
Q psy4703          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA-YEA   93 (401)
Q Consensus        15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a-~~~   93 (401)
                      .++.++..|+|++|+..|.+++..+ |+   +..+++.+|.+|+..|+|++|+..|.++++++|+++.+++.+|.+ +..
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~   91 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRAN-PQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ   91 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHC-CS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            3445677899999999999999999 76   889999999999999999999999999999999999999999999 889


Q ss_pred             cCCH--HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703          94 IGKF--EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA  154 (401)
Q Consensus        94 lg~~--eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (401)
                      .|++  ++|+..|+++++++|++..++..++.++...++..++.        .+|+.++...+
T Consensus        92 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~--------~~~~~al~~~p  146 (177)
T 2e2e_A           92 ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI--------ELWQKVMDLNS  146 (177)
T ss_dssp             TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH--------HHHHHHHHTCC
T ss_pred             cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH--------HHHHHHHhhCC
Confidence            9999  99999999999999999999999999999888775444        46777777333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.44  E-value=7.9e-12  Score=125.40  Aligned_cols=213  Identities=11%  Similarity=0.019  Sum_probs=162.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      +|..+..+...|..++..|++++|+..|+++++.+ |+    ..++.++|.+|...|++++|+..+++++..+|.++.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  307 (514)
T 2gw1_A          233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY  307 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH
Confidence            37788999999999999999999999999999999 64    88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~  163 (401)
                      +.+|.++..+|++++|+..|+++++++|++..++..++.++...++..++..        +|+.+.. .|.+.......+
T Consensus       308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--------~~~~~~~~~~~~~~~~~~la  379 (514)
T 2gw1_A          308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET--------LFSEAKRKFPEAPEVPNFFA  379 (514)
T ss_dssp             HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH--------HHHHHHHHSTTCSHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHHcccCHHHHHHHH
Confidence            9999999999999999999999999999999999999999888877654443        5666666 555666667777


Q ss_pred             HHHHHhhhcchhhHHHhhhhHHHHHHHHhhc-cCchh------H--HhhHHHHH---HHHHHhcHHHHHHHHcCCChhHH
Q psy4703         164 NNLVVLAREMSGAEMLLKSGVAKQINTLLKC-ETNEE------I--YLGEEDFI---TSIIKQGVDILKRLYMSKNENIR  231 (401)
Q Consensus       164 ~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~-~~~~e------~--~lA~e~fi---~~i~~~gv~~Lk~l~~s~~d~i~  231 (401)
                      ..+...++.+.+...+         .+.+.. ..+++      .  .++.-.+-   .+..+.+...+.+.+...++...
T Consensus       380 ~~~~~~~~~~~A~~~~---------~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  450 (514)
T 2gw1_A          380 EILTDKNDFDKALKQY---------DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ  450 (514)
T ss_dssp             HHHHHTTCHHHHHHHH---------HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHCCCHHHHHHHH---------HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH
Confidence            7777777765443332         222211 11211      1  12222222   34566778888888875555544


Q ss_pred             HHHHHhhh
Q psy4703         232 VRALVGLC  239 (401)
Q Consensus       232 ~ralvgLc  239 (401)
                      .....|.|
T Consensus       451 ~~~~la~~  458 (514)
T 2gw1_A          451 AKIGLAQM  458 (514)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            43333433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.44  E-value=6.3e-13  Score=112.48  Aligned_cols=110  Identities=7%  Similarity=-0.055  Sum_probs=97.3

Q ss_pred             HHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4703          30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (401)
Q Consensus        30 ~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~  109 (401)
                      ..|.+++.++ |+   +...++++|.+++..|+|++|+..|++++..+|+++.+|+.+|.+|..+|+|++|+.+|++++.
T Consensus         5 ~~l~~al~~~-p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A            5 GTLAMLRGLS-ED---TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             ----CCTTCC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCC-HH---HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            4577788888 55   8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703         110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus       110 l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ++|+++.++..++.++..+++..++..        +|+.++.
T Consensus        81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~--------~~~~al~  114 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQLGDLDGAES--------GFYSARA  114 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHH--------HHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHH--------HHHHHHH
Confidence            999999999999999999998866555        5555555

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.44  E-value=1e-12  Score=133.06  Aligned_cols=128  Identities=13%  Similarity=0.120  Sum_probs=77.1

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .+|. ...+...|..++..|+|++|+.+|.++++.+ |+   ...++.++|.+|...|+|++|+..|+++++++|+++.+
T Consensus       272 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  346 (537)
T 3fp2_A          272 LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PE---YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP  346 (537)
T ss_dssp             HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHH
T ss_pred             cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            3444 5555666666666666666666666666666 44   55556666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ++.+|.++..+|++++|+..|+++++++|++..++..++.++...++..++..
T Consensus       347 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  399 (537)
T 3fp2_A          347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK  399 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            66666666666666666666666666666666666666555555555444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.44  E-value=2.6e-12  Score=118.25  Aligned_cols=124  Identities=18%  Similarity=0.168  Sum_probs=111.1

Q ss_pred             HHHcCCHHHHHHHHHHHHhhcCC-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy4703          19 AFKQGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF   97 (401)
Q Consensus        19 ~~~~g~y~eAi~~y~~Al~l~~p-~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~   97 (401)
                      +...|+|++|+..|+++++.. | .++..+.+++++|.+|...|++++|+..|+++++++|+++.+++.+|.++..+|++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             cCccchHHHHHHHHHHHHhcc-cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            445689999999999999985 3 22458999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          98 EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        98 eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ++|+..|+++++++|++..++..++.++...++..++..        +|+.+..
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--------~~~~a~~  139 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD--------DLLAFYQ  139 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHH--------HHHHHHH
Confidence            999999999999999999999999999988888755444        6677766

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.43  E-value=1.4e-12  Score=122.87  Aligned_cols=130  Identities=12%  Similarity=0.205  Sum_probs=116.6

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      +.+|.++..+...|..+...|++++|+.+|.++++.+ |+   ...++.++|.+|...|++++|+..++++++.+|+++.
T Consensus       166 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  241 (327)
T 3cv0_A          166 EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PD---DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR  241 (327)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            4567788899999999999999999999999999999 76   7889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CccHHHHHHHHHHHHHHHHHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT------------NKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~------------~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      +++.+|.++..+|++++|+..|+++++++|+            +..++..++.++..+++...+..
T Consensus       242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  307 (327)
T 3cv0_A          242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL  307 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence            9999999999999999999999999999998            67788888888887777655444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.42  E-value=1.1e-11  Score=127.64  Aligned_cols=159  Identities=14%  Similarity=0.048  Sum_probs=106.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-------------------------------cchHHHHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-------------------------------HERATCLKNRA   54 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~-------------------------------~~~~~~~~n~a   54 (401)
                      |.+...+...|..+++.|++++|+..|+++++.+ |+.                               |.+..++..+|
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  380 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG  380 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence            5678888888888999999999999988888877 541                               22455666677


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703          55 AVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        55 ~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a  134 (401)
                      .+|.+.|++++|+..|+++++++|.++.+|+.+|.+|...|++++|+..|+++++++|++..++..++.++...++..++
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  460 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA  460 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence            77777777777777777777777777777777777777777777777777777777776666666666666666555433


Q ss_pred             HHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhhhcc
Q psy4703         135 NEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM  173 (401)
Q Consensus       135 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~  173 (401)
                      ..        +|+.+.. .+.+..........+...++.+
T Consensus       461 ~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  492 (597)
T 2xpi_A          461 NE--------YLQSSYALFQYDPLLLNELGVVAFNKSDMQ  492 (597)
T ss_dssp             HH--------HHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HH--------HHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence            33        4555554 3444444444444555555543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.42  E-value=2.8e-12  Score=114.37  Aligned_cols=104  Identities=13%  Similarity=0.155  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP------   81 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~------   81 (401)
                      ++..+...|..++..|+|++|+.+|.+++.++ |+   ...+++++|.+|+.+|+|++|+.+|++++++.|.+.      
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  111 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  111 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc---chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            56789999999999999999999999999999 76   889999999999999999999999999999888776      


Q ss_pred             ----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q psy4703          82 ----------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (401)
Q Consensus        82 ----------kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~  115 (401)
                                .+++++|.+|..+|++++|+..|+++++++|++.
T Consensus       112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence                      9999999999999999999999999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.6e-12  Score=130.58  Aligned_cols=158  Identities=12%  Similarity=0.089  Sum_probs=105.0

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      ..+|.+...+...|..++..|++++|+..|.++++++ |+   +..++.++|.+|...|++++|+..++++++.+|+++.
T Consensus       298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  373 (514)
T 2gw1_A          298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PE---NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE  373 (514)
T ss_dssp             TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SS---CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred             hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH
Confidence            4456666677777777777777777777777777777 54   5566777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc-C
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAI---VTKRMQENEQLQNKVHNMFKYVFD-T  152 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~------~~~~L~~l~~~---~~~~~~a~~~~~~~~~~~~~~~~~-~  152 (401)
                      +++.+|.++..+|++++|+..|+++++++|+++.      ++..++.++..   .++..++..        +|+.+.. .
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~--------~~~~a~~~~  445 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN--------LLEKASKLD  445 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH--------HHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH--------HHHHHHHhC
Confidence            7777777777777777777777777777776655      66666666666   555543333        4555554 3


Q ss_pred             CCChhHHHHHHHHHHHhhhc
Q psy4703         153 SAPMDKRVTAVNNLVVLARE  172 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~  172 (401)
                      |.........+..+...++.
T Consensus       446 ~~~~~~~~~la~~~~~~g~~  465 (514)
T 2gw1_A          446 PRSEQAKIGLAQMKLQQEDI  465 (514)
T ss_dssp             TTCHHHHHHHHHHHHHTTCH
T ss_pred             cccHHHHHHHHHHHHHhcCH
Confidence            44444445555555555554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.41  E-value=9.4e-13  Score=125.26  Aligned_cols=133  Identities=11%  Similarity=-0.014  Sum_probs=121.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++.+|+++.++...|..+...|++++|+..|++++..+ |+   ....+.+.+..+...+++++|+..+.++++.+|+++
T Consensus       144 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p~---~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~  219 (287)
T 3qou_A          144 WQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-QD---TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDA  219 (287)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-CS---HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCH
T ss_pred             HHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-cc---hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccH
Confidence            46789999999999999999999999999999999999 75   667788888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--ccHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTKRMQENEQL  138 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~--~~~~~~L~~l~~~~~~~~~a~~~~  138 (401)
                      .+++.+|.+|...|++++|+..|+++++.+|++  ..++..++.++..+++...+...+
T Consensus       220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~  278 (287)
T 3qou_A          220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY  278 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence            999999999999999999999999999999998  888999999998888765555433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.5e-13  Score=109.53  Aligned_cols=96  Identities=25%  Similarity=0.415  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------   80 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~------   80 (401)
                      .++..+...|..++..|+|++|+..|+++++++ |+   ++.+++++|.+|+.+|+|++|+.+|+++++++|++      
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   77 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR   77 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence            367889999999999999999999999999999 76   78999999999999999999999999999999999      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKH  106 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~k  106 (401)
                      ..+++++|.++..+|++++|+..+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            99999999999999999988877654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.40  E-value=1.2e-12  Score=114.61  Aligned_cols=131  Identities=11%  Similarity=0.107  Sum_probs=110.5

Q ss_pred             CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY-LKQNQNDKVIEDCSKSLEIVPD   79 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y-~klg~y~~Ai~~~~kAL~ldP~   79 (401)
                      +++.+|+++..+...|..+...|++++|+..|++++... | .   +..+..++.+. ...++..+|+..++++++++|+
T Consensus        32 al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~---~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~  106 (176)
T 2r5s_A           32 LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-D---NSYKSLIAKLELHQQAAESPELKRLEQELAANPD  106 (176)
T ss_dssp             SCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-C---HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT
T ss_pred             HHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-C---hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC
Confidence            356789999999999999999999999999999999999 6 2   33444444443 2334455689999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--ccHHHHHHHHHHHHHHHHHHHH
Q psy4703          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~--~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ++.+++.+|.++..+|++++|+..|+++++++|+.  ..++..++.++...++...+..
T Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A          107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            99999999999999999999999999999999976  5589999999888887765554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=5.2e-12  Score=103.81  Aligned_cols=92  Identities=14%  Similarity=0.166  Sum_probs=87.1

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      ..+..+.++|.++++.|+|++|+..|+++++++|+++.+++++|.+|..+|+|++|+.+|+++++++|++..++..++.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4703         125 FAIVTKRMQENE  136 (401)
Q Consensus       125 ~~~~~~~~~a~~  136 (401)
                      +..+++..++..
T Consensus        82 ~~~~~~~~~A~~   93 (126)
T 3upv_A           82 QIAVKEYASALE   93 (126)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHHhCHHHHHH
Confidence            999988766555

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.40  E-value=3.4e-12  Score=103.41  Aligned_cols=108  Identities=29%  Similarity=0.474  Sum_probs=101.7

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      +.+|.+...+...|..++..|++++|+.+|.+++... |.   ...++.++|.++...|++++|+..+++++..+|.+..
T Consensus        29 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  104 (136)
T 2fo7_A           29 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE  104 (136)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            4467788889999999999999999999999999999 76   6789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      +++.+|.++...|++++|+..|+++++++|++
T Consensus       105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          105 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999999999864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.40  E-value=3.1e-12  Score=117.42  Aligned_cols=135  Identities=20%  Similarity=0.207  Sum_probs=119.5

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l---   76 (401)
                      .+|..+..+...|..++..|+|++|+.+|.+++++..    ++++....++.++|.+|..+|++++|+..|.+++.+   
T Consensus        38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3478899999999999999999999999999998831    223568899999999999999999999999999998   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          77 -----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV--------EPTNKAIQPVLSRLFAIVTKRMQENEQL  138 (401)
Q Consensus        77 -----dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l--------~P~~~~~~~~L~~l~~~~~~~~~a~~~~  138 (401)
                           +|....+++.+|.+|..+|++++|+..|++++++        +|....+...++.++...++..++...+
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  192 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY  192 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                 5777899999999999999999999999999999        6666778889999999888887776644

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.39  E-value=1e-11  Score=118.56  Aligned_cols=99  Identities=9%  Similarity=0.142  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l--~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      ....++...+..+...|++++|+..|++.+..  + |+   ++.+++.+|.+|...|++++|+..+++     |.++.++
T Consensus        63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~-P~---~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~  133 (291)
T 3mkr_A           63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVD-VT---NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECM  133 (291)
T ss_dssp             HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCC-CS---CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHH
T ss_pred             hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHH
Confidence            34445555555555555555555555555543  2 33   445555555555555555555555554     5555555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      +.+|.+|..+|++++|+..|+++++++|++
T Consensus       134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~  163 (291)
T 3mkr_A          134 AMTVQILLKLDRLDLARKELKKMQDQDEDA  163 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence            555555555555555555555555555554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.39  E-value=3.5e-12  Score=132.24  Aligned_cols=136  Identities=13%  Similarity=0.032  Sum_probs=104.1

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy4703          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY  101 (401)
Q Consensus        22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~  101 (401)
                      .|++++|+..|+++++++ |+   +..+++++|.+|...|+|++|+..|+++++++|+++.+++.+|.+|..+|++++|+
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             --------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            489999999999999999 76   88999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHh
Q psy4703         102 TDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVL  169 (401)
Q Consensus       102 ~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l  169 (401)
                      ..|+++++++|++..++..++.++...++..++..        +|+.++. .|.+.......+..+..+
T Consensus        78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--------~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA--------AYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999998888755544        6777777 566666666666667766

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.38  E-value=8.5e-12  Score=119.11  Aligned_cols=133  Identities=11%  Similarity=-0.008  Sum_probs=106.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAV----YLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~----y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      |.+.+.+...|..+.+.|++++|+..|+++++.+ |+   ..  ..+++.+    +...|++++|+..|+++++.+|+++
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~---~~--~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~  200 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-ED---AT--LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL  200 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cC---cH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH
Confidence            5667788888899999999999999999999998 75   32  2233333    2334889999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .+++.+|.++..+|++++|+..|+++++++|+++.++..++.+....++...       .+..+++++..
T Consensus       201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~e-------aa~~~~~~~~~  263 (291)
T 3mkr_A          201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPE-------VTNRYLSQLKD  263 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888888777665432       23456777776

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.38  E-value=6e-13  Score=129.75  Aligned_cols=147  Identities=12%  Similarity=0.132  Sum_probs=124.8

Q ss_pred             HcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHH
Q psy4703          21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---------------PKALF   85 (401)
Q Consensus        21 ~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---------------~kA~~   85 (401)
                      ..+++++|+..|.+++... |+   .+.++.++|.+|++.|+|++|+..|+++++++|.+               ..+++
T Consensus       125 ~L~~~~~A~~~~~~a~~~~-p~---~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~  200 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEK-LE---QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL  200 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHH-HH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHH-HH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH
Confidence            3456778888888888888 54   89999999999999999999999999999999999               79999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHH
Q psy4703          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVN  164 (401)
Q Consensus        86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~  164 (401)
                      ++|.+|..+|+|++|+.+|+++++++|++..++..++.++..+++..++..        .|+.++. .|.+.........
T Consensus       201 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~--------~~~~al~l~P~~~~a~~~l~~  272 (336)
T 1p5q_A          201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA--------DFQKVLQLYPNNKAAKTQLAV  272 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888755544        6777777 5666666666666


Q ss_pred             HHHHhhhcchhhHHH
Q psy4703         165 NLVVLAREMSGAEML  179 (401)
Q Consensus       165 ~L~~l~~~~~gae~~  179 (401)
                      .+..+++.+.+...+
T Consensus       273 ~~~~~~~~~~a~~~~  287 (336)
T 1p5q_A          273 CQQRIRRQLAREKKL  287 (336)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666777765544433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.37  E-value=5.9e-12  Score=119.67  Aligned_cols=136  Identities=13%  Similarity=0.036  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC--
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLEIVPDD--   80 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~---~~~~~~~~n~a~~y~kl-g~y~~Ai~~~~kAL~ldP~~--   80 (401)
                      ..+..+.+.|+.+...|+|++|+.+|++|+++. |..   ...+.++.++|.+|... |++++|+.+|++++++.|.+  
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~  153 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence            347889999999999999999999999999998 531   12367899999999995 99999999999999998854  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4703          81 ----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-------IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV  149 (401)
Q Consensus        81 ----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~-------~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~  149 (401)
                          ..++.++|.+|..+|+|++|+..|+++++++|++..       ++..++.++..+++...+        ..+|+.+
T Consensus       154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A--------~~~~~~a  225 (292)
T 1qqe_A          154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA--------ARTLQEG  225 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH--------HHHHHGG
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH--------HHHHHHH
Confidence                567999999999999999999999999999998764       345667777766666444        4477888


Q ss_pred             hc
Q psy4703         150 FD  151 (401)
Q Consensus       150 ~~  151 (401)
                      ..
T Consensus       226 l~  227 (292)
T 1qqe_A          226 QS  227 (292)
T ss_dssp             GC
T ss_pred             Hh
Confidence            77

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.35  E-value=4.7e-11  Score=116.92  Aligned_cols=124  Identities=14%  Similarity=0.186  Sum_probs=110.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VP   78 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~-~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l------dP   78 (401)
                      +..+..+...|..++..|+|++|+.+|++++++. |+.+ ....++.++|.+|+.+|+|++|+..|++++++      +|
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            5678889999999999999999999999999999 7522 23478999999999999999999999999998      67


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCccHHHHHHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV------EPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l------~P~~~~~~~~L~~l~~~~~~  130 (401)
                      ....+++.+|.+|..+|++++|+..|++++++      .|....++..++.++...++
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            78899999999999999999999999999998      45556678888888888888

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.35  E-value=1.1e-11  Score=117.87  Aligned_cols=134  Identities=8%  Similarity=0.064  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----   80 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-----   80 (401)
                      +..+...|+.+...|+|++|+.+|.+++++. +.   .+..+.+|.++|.+|..+|+|++|+.+|++|+++.|..     
T Consensus        37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  115 (292)
T 1qqe_A           37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQ-KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (292)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            3456667888999999999999999999986 31   12347899999999999999999999999999998743     


Q ss_pred             -HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          81 -PKALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        81 -~kA~~~~a~a~~~l-g~~eeA~~~~~kal~l~P~~------~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                       ..++.++|.+|... |++++|+.+|++++++.|.+      ..++..++.++...++..++        ..+|+.+..
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A--------~~~~~~al~  186 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA--------SDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHHH
Confidence             56899999999995 99999999999999998865      23456677777777766444        447777777

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.34  E-value=1.3e-11  Score=117.99  Aligned_cols=159  Identities=11%  Similarity=0.065  Sum_probs=124.9

Q ss_pred             ccCChhHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-hcCCCCcchHHHHHHHHHHHHHcCCHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFK-------QGDY-------ETALDFYTKALK-VTAEESHERATCLKNRAAVYLKQNQNDKV   66 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~-------~g~y-------~eAi~~y~~Al~-l~~p~~~~~~~~~~n~a~~y~klg~y~~A   66 (401)
                      |..+|.++..|...|..+..       .|++       ++|+..|++|++ ++ |+   +..+|.++|..+...|++++|
T Consensus        43 l~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~---~~~~~~~~~~~~~~~~~~~~A  118 (308)
T 2ond_A           43 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KK---NMLLYFAYADYEESRMKYEKV  118 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TT---CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHhcCCHHHH
Confidence            45678999999999998874       5885       999999999999 68 76   888999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy4703          67 IEDCSKSLEIVPDDPK-ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI-VTKRMQENEQLQNKVHN  144 (401)
Q Consensus        67 i~~~~kAL~ldP~~~k-A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~-~~~~~~a~~~~~~~~~~  144 (401)
                      ...|+++++++|.++. +|..+|.++...|++++|...|+++++.+|.+..++...+.+... .++.        ..+..
T Consensus       119 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~--------~~A~~  190 (308)
T 2ond_A          119 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK--------SVAFK  190 (308)
T ss_dssp             HHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH--------HHHHH
T ss_pred             HHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH--------HHHHH
Confidence            9999999999999987 999999999999999999999999999999886665543333211 1222        23445


Q ss_pred             HHHHhhc-CCCChhHHHHHHHHHHHhhhc
Q psy4703         145 MFKYVFD-TSAPMDKRVTAVNNLVVLARE  172 (401)
Q Consensus       145 ~~~~~~~-~~~~~~~~~~a~~~L~~l~~~  172 (401)
                      +|+.++. .|.+.......+.-+..+++.
T Consensus       191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~  219 (308)
T 2ond_A          191 IFELGLKKYGDIPEYVLAYIDYLSHLNED  219 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence            7777777 455544444444444444443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.33  E-value=2.1e-11  Score=116.42  Aligned_cols=139  Identities=8%  Similarity=-0.055  Sum_probs=121.5

Q ss_pred             cc-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy4703           2 ID-NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERAT-CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD   79 (401)
Q Consensus         2 i~-~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~-~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~   79 (401)
                      |+ .+|++...|...|..+...|++++|...|++++++. |.   ++. +|.++|.++.+.|++++|+..|+++++.+|.
T Consensus        91 l~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~  166 (308)
T 2ond_A           91 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             HTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SS---CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cc---CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence            44 589999999999999999999999999999999999 76   454 8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703          80 DPKALFRRCQAYEA-IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus        80 ~~kA~~~~a~a~~~-lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (401)
                      +..+|...+..... +|++++|+..|+++++++|+++.++..++.+....++..+        +..+|+++...
T Consensus       167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~--------A~~~~~~al~~  232 (308)
T 2ond_A          167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN--------TRVLFERVLTS  232 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH--------HHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHhc
Confidence            98888766665443 7999999999999999999999999999888877766543        44578888773

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.33  E-value=2.2e-11  Score=98.64  Aligned_cols=85  Identities=11%  Similarity=0.016  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703          27 TALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKH  106 (401)
Q Consensus        27 eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~k  106 (401)
                      +|+..|.++++.+ |+   ++.+++++|.+|+..|+|++|+..|+++++++|.++.+++.+|.+|..+|++++|+..|++
T Consensus         3 ~a~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQG-TD---NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTT-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5899999999999 76   8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCc
Q psy4703         107 IHRVEPTNK  115 (401)
Q Consensus       107 al~l~P~~~  115 (401)
                      +++++|.+.
T Consensus        79 al~~~~~~~   87 (115)
T 2kat_A           79 GLAAAQSRG   87 (115)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHhccccc
Confidence            999998543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=2.1e-11  Score=121.83  Aligned_cols=169  Identities=13%  Similarity=0.075  Sum_probs=129.9

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhC
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQN--QNDKVIEDCSKSLEIV   77 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg--~y~~Ai~~~~kAL~ld   77 (401)
                      .+|..+..+.+.|..++..|+|++|+.+|++++++.+    +.++..+.++.++|.+++..|  +|++|+.+|+++++++
T Consensus        89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~  168 (472)
T 4g1t_A           89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK  168 (472)
T ss_dssp             CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence            3677788899999999999999999999999999862    223457889999999888765  6999999999999999


Q ss_pred             CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC
Q psy4703          78 PDDPKALFRRCQAYE---AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS  153 (401)
Q Consensus        78 P~~~kA~~~~a~a~~---~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~  153 (401)
                      |+++.++..+|.++.   ..+++++|+..|+++++++|++..+...++.....+.......    ..+..+|+.+.. .|
T Consensus       169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~----~~a~~~~~~al~~~~  244 (472)
T 4g1t_A          169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEE----GEGEKLVEEALEKAP  244 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHCS
T ss_pred             CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHhCc
Confidence            999999999999865   4577899999999999999999998888776554433221111    234456777776 55


Q ss_pred             CChhHHHHHHHHHHHhhhcchhh
Q psy4703         154 APMDKRVTAVNNLVVLAREMSGA  176 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~~~~ga  176 (401)
                      .........+..+...++.+.+.
T Consensus       245 ~~~~~~~~lg~~~~~~~~~~~A~  267 (472)
T 4g1t_A          245 GVTDVLRSAAKFYRRKDEPDKAI  267 (472)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCchHHHH
Confidence            55666666666666666654443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.32  E-value=1.8e-10  Score=107.64  Aligned_cols=123  Identities=17%  Similarity=0.218  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VPD   79 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~-~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l------dP~   79 (401)
                      .....+...|..++..|+|++|+.+|+++++.. |+.+ ....++.++|.+|+..|++++|+..+++++++      .|.
T Consensus         3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (338)
T 3ro2_A            3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   81 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence            456788899999999999999999999999999 7522 23678999999999999999999999999988      556


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc------HHHHHHHHHHHHHH
Q psy4703          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVTK  130 (401)
Q Consensus        80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~------~~~~L~~l~~~~~~  130 (401)
                      .+.+++.+|.++..+|++++|+..+++++++.|....      +...++.++...++
T Consensus        82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            6889999999999999999999999999998775544      67778888887777

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.32  E-value=2.6e-11  Score=104.54  Aligned_cols=100  Identities=22%  Similarity=0.268  Sum_probs=92.5

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~  123 (401)
                      +..+..++++|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|+|++|+.+|+++++++|++..++..++.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703         124 LFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus       124 l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ++..+++..++..        +|+.++.
T Consensus        88 ~~~~~g~~~~A~~--------~~~~al~  107 (164)
T 3sz7_A           88 ARFDMADYKGAKE--------AYEKGIE  107 (164)
T ss_dssp             HHHHTTCHHHHHH--------HHHHHHH
T ss_pred             HHHHccCHHHHHH--------HHHHHHH
Confidence            9999888765544        6666666

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.32  E-value=2.4e-11  Score=117.83  Aligned_cols=131  Identities=14%  Similarity=0.183  Sum_probs=105.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHHHHHcCC-------------------
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQ-------------------   62 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---~~~~~~~~~n~a~~y~klg~-------------------   62 (401)
                      .|..+..+...|..++..|++++|+.+|.+++++. |.   .+....++.++|.+|...|+                   
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~  161 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS-RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD  161 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence            45667788889999999999999999999999887 42   23346688999999999999                   


Q ss_pred             -HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc------HHHHHHHHHHHHH
Q psy4703          63 -NDKVIEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVT  129 (401)
Q Consensus        63 -y~~Ai~~~~kAL~l------dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~------~~~~L~~l~~~~~  129 (401)
                       |++|+..+.+++.+      .|....++..+|.+|..+|++++|+..|++++++.|....      +...++.++...+
T Consensus       162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  241 (406)
T 3sf4_A          162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG  241 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence             99999999999887      3445678899999999999999999999999988776655      6777777777777


Q ss_pred             HHHHHHH
Q psy4703         130 KRMQENE  136 (401)
Q Consensus       130 ~~~~a~~  136 (401)
                      +..++..
T Consensus       242 ~~~~A~~  248 (406)
T 3sf4_A          242 EFETASE  248 (406)
T ss_dssp             CHHHHHH
T ss_pred             ChHHHHH
Confidence            7655544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.31  E-value=4e-11  Score=99.11  Aligned_cols=96  Identities=10%  Similarity=-0.020  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      ..++.+|.++++.|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703         128 VTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus       128 ~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .++..++..        .|+.++.
T Consensus        98 ~g~~~~A~~--------~~~~al~  113 (121)
T 1hxi_A           98 EHNANAALA--------SLRAWLL  113 (121)
T ss_dssp             HHHHHHHHH--------HHHHHHC
T ss_pred             cCCHHHHHH--------HHHHHHH
Confidence            988765544        6666665

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.31  E-value=2e-11  Score=119.61  Aligned_cols=161  Identities=11%  Similarity=0.063  Sum_probs=119.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHH
Q psy4703          14 ESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-------DPKAL   84 (401)
Q Consensus        14 ~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~-------~~kA~   84 (401)
                      ..|..++..|+|++|+.+|.+|+++..  ++.+..+.+++++|.+|..+|++++|+.++.+|+++.+.       .+.++
T Consensus       108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            499999999999999999999999841  333457899999999999999999999999999998443       35689


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDK  158 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~------~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  158 (401)
                      ..+|.+|..+|+|++|+..|++++++.|...      .+...++.++...++..++...+ .++.++++.....+.....
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~  266 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF-KRAIAVFEESNILPSLPQA  266 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHTTCGGGHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHhhccchhHHHH
Confidence            9999999999999999999999999977554      36777888888888776665522 2222222222211222333


Q ss_pred             HHHHHHHHHHhhhcchh
Q psy4703         159 RVTAVNNLVVLAREMSG  175 (401)
Q Consensus       159 ~~~a~~~L~~l~~~~~g  175 (401)
                      ....+..+..+++.+.+
T Consensus       267 ~~~l~~~~~~~g~~~~A  283 (383)
T 3ulq_A          267 YFLITQIHYKLGKIDKA  283 (383)
T ss_dssp             HHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHCCCHHHH
Confidence            44444555555554433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.30  E-value=1.3e-10  Score=108.09  Aligned_cols=130  Identities=13%  Similarity=0.137  Sum_probs=113.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k----lg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      +|.++.++...|..++..|++++|+.+|+++++..      +..+++++|.+|..    .+++++|+.+|+++++.+  +
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~   73 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y   73 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C
Confidence            57889999999999999999999999999999955      67899999999999    999999999999999986  8


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703          81 PKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus        81 ~kA~~~~a~a~~~----lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  152 (401)
                      +.+++.+|.+|..    .+++++|+..|+++++.+  ++.+...++.++..    .++..++        ..+|+++...
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A--------~~~~~~a~~~  143 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKA--------VEYFTKACDL  143 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHH--------HHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHH--------HHHHHHHHhc
Confidence            9999999999999    999999999999999874  78889999988877    6665444        3466666663

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.30  E-value=1.2e-10  Score=112.91  Aligned_cols=124  Identities=17%  Similarity=0.214  Sum_probs=108.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE-RATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VP   78 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~-~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l------dP   78 (401)
                      +..+..+...|..++..|+|++|+.+|++++++. |+.+. ...++.++|.+|+..|+|++|+..+++++.+      .|
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            3457788999999999999999999999999999 75322 3678999999999999999999999999988      45


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc------HHHHHHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVTK  130 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~------~~~~L~~l~~~~~~  130 (401)
                      ..+.+++.+|.++..+|++++|+..|++++++.|....      +...++.++...++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            56889999999999999999999999999999875433      77788888888887

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.30  E-value=7.6e-12  Score=111.38  Aligned_cols=148  Identities=11%  Similarity=0.056  Sum_probs=112.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------
Q psy4703          14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP------------   81 (401)
Q Consensus        14 ~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~------------   81 (401)
                      ..+......|+|+.|.+.|....... +   ..+..+.++|.+++..|+|++|+..|.+++++.|.++            
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~   84 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEK-V---QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK   84 (198)
T ss_dssp             -------------CCCSGGGCCHHHH-H---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHHHH-H---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence            34555566778888888877665555 3   3788999999999999999999999999999999887            


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Q psy4703          82 ----KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM  156 (401)
Q Consensus        82 ----kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~  156 (401)
                          .+++++|.+|..+|+|++|+.+|+++++++|++..++..++.++..+++...+..        +|+.++. .|.+.
T Consensus        85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~--------~~~~al~~~p~~~  156 (198)
T 2fbn_A           85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE--------NLYKAASLNPNNL  156 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH--------HHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH--------HHHHHHHHCCCcH
Confidence                8999999999999999999999999999999999999999999998888755544        6777777 55555


Q ss_pred             hHHHHHHHHHHHhhhcc
Q psy4703         157 DKRVTAVNNLVVLAREM  173 (401)
Q Consensus       157 ~~~~~a~~~L~~l~~~~  173 (401)
                      ........++..+++..
T Consensus       157 ~~~~~l~~~~~~~~~~~  173 (198)
T 2fbn_A          157 DIRNSYELCVNKLKEAR  173 (198)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555555543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.30  E-value=2.3e-11  Score=111.50  Aligned_cols=107  Identities=23%  Similarity=0.216  Sum_probs=97.9

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l---   76 (401)
                      .+|..+..+...|..+...|+|++|+.+|.+++.+..    |+.+....++.++|.+|..+|++++|+..+++++++   
T Consensus        80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  159 (283)
T 3edt_B           80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT  159 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3578889999999999999999999999999999831    333568999999999999999999999999999999   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          77 -----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        77 -----dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                           +|....+++.+|.+|..+|++++|+..|++++++
T Consensus       160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 7778899999999999999999999999999987

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.29  E-value=2.5e-11  Score=113.33  Aligned_cols=133  Identities=23%  Similarity=0.176  Sum_probs=114.3

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l---   76 (401)
                      .+|..+..+...|..++..|+|++|+.+|++++++..    ++.+....++.++|.+|...|++++|+..+.+++.+   
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            4788899999999999999999999999999999721    123558899999999999999999999999999988   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          77 -----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE--------PTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        77 -----dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~--------P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                           +|....+++.+|.+|..+|++++|+..|++++++.        |....+...++.++...++..++..
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  174 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY  174 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                 46678899999999999999999999999999884        4445667777888777777765555

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.29  E-value=2.9e-12  Score=130.21  Aligned_cols=140  Identities=12%  Similarity=0.117  Sum_probs=115.5

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHH
Q psy4703          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---------------PKALFR   86 (401)
Q Consensus        22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---------------~kA~~~   86 (401)
                      .++|++|+..|..+++.. |+   .+..+.++|.+|++.|+|++|+..|++|++++|.+               ..+|++
T Consensus       247 l~~~~~A~~~~~~~~~~~-~~---~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n  322 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEK-LE---QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN  322 (457)
T ss_dssp             EEEEECCCCGGGSCHHHH-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHH-HH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence            345667888888888888 54   89999999999999999999999999999999998               799999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~  165 (401)
                      +|.+|.++|+|++|+.+|+++++++|++..++..++.++..+++..++..        .|++++. .|.+..........
T Consensus       323 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~--------~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG--------DFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHTTC----CHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHH--------HHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888755444        7888887 44444555555555


Q ss_pred             HHHhhhcc
Q psy4703         166 LVVLAREM  173 (401)
Q Consensus       166 L~~l~~~~  173 (401)
                      +..+++..
T Consensus       395 ~~~~~~~~  402 (457)
T 1kt0_A          395 QKKAKEHN  402 (457)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.27  E-value=5.2e-11  Score=111.09  Aligned_cols=135  Identities=21%  Similarity=0.227  Sum_probs=118.0

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--   77 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--   77 (401)
                      .+|..+..+...|..++..|++++|+.+|.+++.+..    ++.+....++.++|.+|..+|++++|+..+.+++++.  
T Consensus        64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999999998831    1225588999999999999999999999999999884  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          78 ------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV--------EPTNKAIQPVLSRLFAIVTKRMQENEQL  138 (401)
Q Consensus        78 ------P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l--------~P~~~~~~~~L~~l~~~~~~~~~a~~~~  138 (401)
                            |....+++.+|.++..+|++++|+..|++++++        +|....+...++.++...++..++...+
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  218 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY  218 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                  667788999999999999999999999999998        6666778888999998888887776644

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.27  E-value=6.8e-11  Score=90.56  Aligned_cols=80  Identities=26%  Similarity=0.373  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      ....++++|.+++..|+|++|+..|+++++++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.27  E-value=6.1e-11  Score=124.02  Aligned_cols=123  Identities=12%  Similarity=0.027  Sum_probs=117.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC--CHHHHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGD----------YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--QNDKVIED   69 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~----------y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg--~y~~Ai~~   69 (401)
                      |..+|+...+|..+|..+...|+          +++|+.+|+++++.+ |+   +..+|++|+.++.+++  +|++++.+
T Consensus        56 l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK---~y~aW~hR~w~l~~l~~~~~~~el~~  131 (567)
T 1dce_A           56 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK---SYGTWHHRCWLLSRLPEPNWARELEL  131 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             HHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcccccHHHHHHH
Confidence            56799999999999999999998          999999999999999 77   9999999999999999  77999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          70 CSKSLEIVPDDPKALFRRCQAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        70 ~~kAL~ldP~~~kA~~~~a~a~~~lg-~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      |++++++||.+..||..|+.++..+| .++++++++.++++.+|+|..++...+.+...+
T Consensus       132 ~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          132 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            99999999999999999999999999 999999999999999999999999999888775

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.26  E-value=1.3e-10  Score=112.45  Aligned_cols=165  Identities=9%  Similarity=-0.045  Sum_probs=132.2

Q ss_pred             CccCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHH----HHc---CCHHHHHHHHH
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVY----LKQ---NQNDKVIEDCS   71 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g--~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y----~kl---g~y~~Ai~~~~   71 (401)
                      +|..+|+...++..+|..+...|  ++++++.++.+++..+ |.   +..+|..|+.++    ..+   +++++++..|+
T Consensus        59 ~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk---~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~  134 (306)
T 3dra_A           59 GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EK---NYQIWNYRQLIIGQIMELNNNDFDPYREFDILE  134 (306)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TT---CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred             HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cc---cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            36789999999999999999999  9999999999999999 77   899999999999    777   78999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4703          72 KSLEIVPDDPKALFRRCQAYEAIGKFE--EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV  149 (401)
Q Consensus        72 kAL~ldP~~~kA~~~~a~a~~~lg~~e--eA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~  149 (401)
                      ++++.+|.+..+|+.|+.++..+|.++  +++..+.++++.+|.|-.++...+.+...++.... .. .-....++++.+
T Consensus       135 ~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~-~~-~~~eEl~~~~~a  212 (306)
T 3dra_A          135 AMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT-DN-TIDEELNYVKDK  212 (306)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC-HH-HHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch-hh-hHHHHHHHHHHH
Confidence            999999999999999999999999999  99999999999999999999888777766543100 00 112234456666


Q ss_pred             hc-CCCChhHHHHHHHHHHHhhh
Q psy4703         150 FD-TSAPMDKRVTAVNNLVVLAR  171 (401)
Q Consensus       150 ~~-~~~~~~~~~~a~~~L~~l~~  171 (401)
                      +. .|.+...-......+...++
T Consensus       213 I~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          213 IVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHhCCCCccHHHHHHHHHHhcCC
Confidence            66 45554444444444444444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.26  E-value=4e-11  Score=101.80  Aligned_cols=105  Identities=19%  Similarity=0.238  Sum_probs=95.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++.+|.++..+...|..++..|+|++|+.+|.+++.++ |+   +..+++++|.+|..+|++++|+..+.++++++|.+.
T Consensus        40 l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           40 IELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KK---YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            35678889999999999999999999999999999999 76   788999999999999999999999999999999999


Q ss_pred             HHHHH--HHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          82 KALFR--RCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        82 kA~~~--~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      .++..  ++..+...|++++|+..++++..+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            98855  555588999999999999887654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.25  E-value=8.5e-11  Score=95.77  Aligned_cols=101  Identities=15%  Similarity=0.252  Sum_probs=92.1

Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703          43 SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (401)
Q Consensus        43 ~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~  122 (401)
                      .+.....++++|.+++..|+|++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            46689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703         123 RLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus       123 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .++...++..++..        +|+.+..
T Consensus        92 ~~~~~~~~~~~A~~--------~~~~~~~  112 (133)
T 2lni_A           92 AALEAMKDYTKAMD--------VYQKALD  112 (133)
T ss_dssp             HHHHHTTCHHHHHH--------HHHHHHH
T ss_pred             HHHHHHhhHHHHHH--------HHHHHHH
Confidence            99988887755444        6666666

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.24  E-value=1.1e-10  Score=96.44  Aligned_cols=93  Identities=11%  Similarity=0.053  Sum_probs=87.6

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~  123 (401)
                      +..+..++++|.+++..|+|++|+..|.+++.++|+++.+++.+|.++..+|+|++|+.+|+++++++|++..++..++.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4703         124 LFAIVTKRMQENE  136 (401)
Q Consensus       124 l~~~~~~~~~a~~  136 (401)
                      ++...++...+..
T Consensus        86 ~~~~~~~~~~A~~   98 (137)
T 3q49_B           86 CQLEMESYDEAIA   98 (137)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHHhhHHHHHH
Confidence            9999888765544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.23  E-value=1e-10  Score=89.58  Aligned_cols=86  Identities=33%  Similarity=0.479  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      |..+..+...|..++..|+|++|+.+|.++++++ |+   +..+++++|.+|..+|++++|+..++++++++|+++.++.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~   81 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ   81 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4678899999999999999999999999999999 76   7889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q psy4703          86 RRCQAYEAIG   95 (401)
Q Consensus        86 ~~a~a~~~lg   95 (401)
                      .+|.++..+|
T Consensus        82 ~l~~~~~~~g   91 (91)
T 1na3_A           82 NLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999998765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.23  E-value=5.6e-10  Score=103.68  Aligned_cols=129  Identities=12%  Similarity=0.167  Sum_probs=112.0

Q ss_pred             hhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q psy4703           6 MNDYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIV   77 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~----~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k----lg~y~~Ai~~~~kAL~ld   77 (401)
                      |.++.++...|..+..    .|++++|+.+|+++++..      ++.+++++|.+|..    .+++++|+..|+++++.+
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  108 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK  108 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence            5667889999999999    999999999999999998      78899999999999    999999999999999984


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q psy4703          78 PDDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYV  149 (401)
Q Consensus        78 P~~~kA~~~~a~a~~~----lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~----~~~~~~a~~~~~~~~~~~~~~~  149 (401)
                        ++.+++.+|.+|..    .+++++|+.+|+++++.+  +..+...++.++..    .++..+        +..+|+.+
T Consensus       109 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~--------A~~~~~~a  176 (273)
T 1ouv_A          109 --YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKK--------ALASYDKA  176 (273)
T ss_dssp             --CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH--------HHHHHHHH
T ss_pred             --CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHH--------HHHHHHHH
Confidence              89999999999999    999999999999999986  56778888887766    455433        33466666


Q ss_pred             hcC
Q psy4703         150 FDT  152 (401)
Q Consensus       150 ~~~  152 (401)
                      .+.
T Consensus       177 ~~~  179 (273)
T 1ouv_A          177 CDL  179 (273)
T ss_dssp             HHT
T ss_pred             HHC
Confidence            653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.23  E-value=6.1e-11  Score=103.57  Aligned_cols=98  Identities=16%  Similarity=0.168  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-------DPK-----ALFRRCQAYEAIGKFEEAYTDAKHIHRV---  110 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~-------~~k-----A~~~~a~a~~~lg~~eeA~~~~~kal~l---  110 (401)
                      .+..+.++|..++++|+|++|+..|++||+++|+       +..     +|.++|.++.++|+|++|+.+|.+++++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4678899999999999999999999999999999       544     9999999999999999999999999999   


Q ss_pred             ----CCCCccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703         111 ----EPTNKAIQ----PVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus       111 ----~P~~~~~~----~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                          +|++..++    ...+.++..+++..++..        .|+.++.
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~--------~y~kAle  130 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMP--------EFKKVVE  130 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH--------HHHHHHh
Confidence                99999999    999999999998876655        5555554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.23  E-value=3.6e-10  Score=91.16  Aligned_cols=119  Identities=14%  Similarity=0.220  Sum_probs=99.3

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~  123 (401)
                      +.....+..+|.+++..|+|++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++++|++..++..++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence            44788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhh
Q psy4703         124 LFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLA  170 (401)
Q Consensus       124 l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~  170 (401)
                      ++...++...+..        +|+.+.. .|.+..........+..++
T Consensus        89 ~~~~~~~~~~A~~--------~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           89 ALSSLNKHVEAVA--------YYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHTTCHHHHHH--------HHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHH--------HHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            9888887754444        6677766 4444444444444444333

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.22  E-value=5.8e-11  Score=116.25  Aligned_cols=108  Identities=18%  Similarity=0.178  Sum_probs=96.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-----IV   77 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~-----ld   77 (401)
                      .+..+..+...|..+...|+|++|+.+|.+++++.+  ++.+..+.++.++|.+|..+|+|++|+.+++++++     .+
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            455678899999999999999999999999999862  22344567999999999999999999999999999     46


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703          78 -PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP  112 (401)
Q Consensus        78 -P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P  112 (401)
                       |..+.+++++|.+|..+|++++|+..+++++++.+
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             88899999999999999999999999999999854

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.22  E-value=6e-11  Score=102.02  Aligned_cols=100  Identities=16%  Similarity=0.160  Sum_probs=91.1

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------------------VPDDPKALFRRCQAYEAIGKFEEAYTDAKH  106 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l------------------dP~~~kA~~~~a~a~~~lg~~eeA~~~~~k  106 (401)
                      ..+..+.++|..+++.|+|++|+..|++++.+                  +|.++.+|+++|.+|..+|+|++|+.+|++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            36788999999999999999999999999999                  788889999999999999999999999999


Q ss_pred             HHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703         107 IHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus       107 al~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (401)
                      +++++|++..++..++.++..+++...+..        .|+.++..
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~--------~~~~al~l  126 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEE--------DLKLLLRN  126 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHH--------HHHHHHhc
Confidence            999999999999999999999998865544        67777773

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.22  E-value=3.6e-09  Score=103.19  Aligned_cols=124  Identities=12%  Similarity=0.030  Sum_probs=116.2

Q ss_pred             CccCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC--CHHHHHH
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQGD----------YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--QNDKVIE   68 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g~----------y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg--~y~~Ai~   68 (401)
                      +|..+|++..+|..++..+...|.          +++++.++..++..+ |.   +..+|..|+.++..++  .+++++.
T Consensus        56 ~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PK---ny~aW~hR~wlL~~l~~~~~~~EL~  131 (331)
T 3dss_A           56 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK---SYGTWHHRCWLLSRLPEPNWARELE  131 (331)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred             HHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHhccCcccHHHHHH
Confidence            367899999999999999988776          789999999999999 77   9999999999999999  4999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          69 DCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        69 ~~~kAL~ldP~~~kA~~~~a~a~~~lg~-~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      .|+++++.+|.|..||..|+.++..+|. +++++.++.++++.+|+|..++...+.+...+
T Consensus       132 ~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          132 LCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999 69999999999999999999999998888776

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.22  E-value=2.1e-11  Score=95.81  Aligned_cols=91  Identities=16%  Similarity=0.155  Sum_probs=73.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERAT-CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY   91 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~-~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~   91 (401)
                      ...|..++..|+|++|+..|+++++.+ |+   +.. +++++|.+|+.+|++++|+.+|+++++++|++..++++     
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-----   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTE-PV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-----   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC-SS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence            567888888888888888888888888 65   667 88888888888888888888888888888888877754     


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCc
Q psy4703          92 EAIGKFEEAYTDAKHIHRVEPTNK  115 (401)
Q Consensus        92 ~~lg~~eeA~~~~~kal~l~P~~~  115 (401)
                         +.+.+|+..|+++...+|+++
T Consensus        75 ---~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 ---KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             ---HHHHHHHHHHCCTTHHHHCCS
T ss_pred             ---HHHHHHHHHHHHHhccCcccc
Confidence               567778888888887777664

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.21  E-value=1.6e-10  Score=96.53  Aligned_cols=130  Identities=12%  Similarity=0.137  Sum_probs=105.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD--   80 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~--   80 (401)
                      +..+..+...|..++..|+|++|+.+|.+++++. +.   ......++.++|.+|..+|++++|+..+++++++.+..  
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   84 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD   84 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            4567889999999999999999999999999987 32   22344689999999999999999999999999986543  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------ccHHHHHHHHHHHHHHHHHHHH
Q psy4703          81 ----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        81 ----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~------~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                          ..+++.+|.++..+|++++|+..+++++++.+..      ..+...++.++...++..++..
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  150 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  150 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence                6789999999999999999999999999875432      2345556666666655544433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.3e-10  Score=92.32  Aligned_cols=69  Identities=14%  Similarity=0.199  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                      .+..++++|.+++..|+|++|+..|+++++++|+++.+++++|.++..+|+|++|+.+|+++++++|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            577899999999999999999999999999999999999999999999999999999999999999998

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.19  E-value=5.7e-10  Score=88.42  Aligned_cols=101  Identities=15%  Similarity=0.225  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      .+..++.+|.+++..|+|++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++++|++..++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703         126 AIVTKRMQENEQLQNKVHNMFKYVFDTSA  154 (401)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (401)
                      ...++..++        ..+|+.+....+
T Consensus        83 ~~~~~~~~A--------~~~~~~~~~~~~  103 (118)
T 1elw_A           83 EFLNRFEEA--------KRTYEEGLKHEA  103 (118)
T ss_dssp             HHTTCHHHH--------HHHHHHHHTTCT
T ss_pred             HHHhhHHHH--------HHHHHHHHHcCC
Confidence            888776544        346777777433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.18  E-value=5.6e-09  Score=98.66  Aligned_cols=172  Identities=13%  Similarity=0.008  Sum_probs=125.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH---ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-   80 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~---~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-   80 (401)
                      +|.....+...+..++..|+|++|+..|.++++.. +..+   .....++.+|.+|...|+|++|+..+.+++++.+.. 
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  149 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI  149 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence            35667788899999999999999999999999988 5422   234567789999999999999999999999876543 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          81 -----PKALFRRCQAYEAIGKFEEAYTDAKHIH---RVEPTNK----AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY  148 (401)
Q Consensus        81 -----~kA~~~~a~a~~~lg~~eeA~~~~~kal---~l~P~~~----~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~  148 (401)
                           ..+++.+|.+|..+|+|++|+..|++++   +..|++.    .+...++.++...++..++...+.+ +..+...
T Consensus       150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k-al~~~~~  228 (293)
T 2qfc_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK-AIEISCR  228 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH-HHHHHHh
Confidence                 6789999999999999999999999999   5566653    4777888888888888766663322 2222211


Q ss_pred             hhcCCCChhHHHHHHHHHHHhhhcchhhHH
Q psy4703         149 VFDTSAPMDKRVTAVNNLVVLAREMSGAEM  178 (401)
Q Consensus       149 ~~~~~~~~~~~~~a~~~L~~l~~~~~gae~  178 (401)
                      .................+..+++.+.+...
T Consensus       229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~  258 (293)
T 2qfc_A          229 INSMALIGQLYYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             TTBCSSHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            111111133345555566667776555344

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.17  E-value=1.2e-09  Score=106.50  Aligned_cols=122  Identities=9%  Similarity=0.073  Sum_probs=113.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-NDKVIEDCSKSLEIVP   78 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g--~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~-y~~Ai~~~~kAL~ldP   78 (401)
                      +..+|++..+|..++..+...|  +|++++.++.++++.+ |.   +..+|.+++.+...+|. +++++++++++|+.+|
T Consensus       101 L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-pr---Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p  176 (331)
T 3dss_A          101 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  176 (331)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred             HHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence            5679999999999999999999  4999999999999999 77   99999999999999999 6999999999999999


Q ss_pred             CCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAI--------------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~l--------------g~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      .|..||..|+.++..+              +.+++++.++.+++.++|+|..++..++-+...
T Consensus       177 ~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          177 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            9999999999999998              569999999999999999999999876655543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.17  E-value=6.7e-11  Score=93.21  Aligned_cols=98  Identities=12%  Similarity=0.110  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSR  123 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~--~~~~~~~L~~  123 (401)
                      +..+++++|.+++..|+|++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|+  +..++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Q psy4703         124 LFAIV-TKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus       124 l~~~~-~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ++... ++..++.        ++++.+..
T Consensus        85 ~~~~~~~~~~~A~--------~~~~~~~~  105 (112)
T 2kck_A           85 ALRYIEGKEVEAE--------IAEARAKL  105 (112)
T ss_dssp             HHTTCSSCSHHHH--------HHHHHHGG
T ss_pred             HHHHHhCCHHHHH--------HHHHHHhh
Confidence            98888 7765443        36777766

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.16  E-value=3.5e-10  Score=110.77  Aligned_cols=108  Identities=18%  Similarity=0.152  Sum_probs=97.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCC
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-----IVP   78 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~-----ldP   78 (401)
                      +..+..+...|..+...|+|++|+.+|.+++++.+  ++......++.++|.+|..+|++++|+.+++++++     .+|
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~  258 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD  258 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence            35678889999999999999999999999999862  12234678899999999999999999999999999     788


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                      ..+.+++.+|.++..+|++++|+..+++++++.+.
T Consensus       259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.16  E-value=5.2e-10  Score=91.32  Aligned_cols=99  Identities=19%  Similarity=0.101  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---ccHHHHHH
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPVLS  122 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~---kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~---~~~~~~L~  122 (401)
                      .++++|.+++..|+|++|+..|+++++.+|+++   .+++.+|.++..+|+|++|+..|+++++.+|++   +.+...++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            578899999999999999999999999999998   899999999999999999999999999999999   77788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4703         123 RLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP  155 (401)
Q Consensus       123 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  155 (401)
                      .++...++..++..        +|+.+....++
T Consensus        84 ~~~~~~g~~~~A~~--------~~~~~~~~~p~  108 (129)
T 2xev_A           84 LSQYGEGKNTEAQQ--------TLQQVATQYPG  108 (129)
T ss_dssp             HHHHHTTCHHHHHH--------HHHHHHHHSTT
T ss_pred             HHHHHcCCHHHHHH--------HHHHHHHHCCC
Confidence            98888887755444        67777663333

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.15  E-value=1.9e-10  Score=111.23  Aligned_cols=125  Identities=12%  Similarity=0.004  Sum_probs=117.7

Q ss_pred             ccCChhHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHH--HHHHHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSA----FKQ---GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND--KVIEDCSK   72 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~----~~~---g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~--~Ai~~~~k   72 (401)
                      |..+|++..+|..++..+    ...   +++++++.++.++++.+ |.   +..+|.+|+.+..+++.++  ++++.+++
T Consensus        96 L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pk---ny~aW~~R~~vl~~l~~~~~~~EL~~~~~  171 (306)
T 3dra_A           96 ALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PK---NHHVWSYRKWLVDTFDLHNDAKELSFVDK  171 (306)
T ss_dssp             HHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence            567899999999999999    776   89999999999999999 77   9999999999999999999  99999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703          73 SLEIVPDDPKALFRRCQAYEAIGK------FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus        73 AL~ldP~~~kA~~~~a~a~~~lg~------~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~  130 (401)
                      +|+.||.|..||..|+.++..+++      +++++.++++++.++|+|..++..++.+....+.
T Consensus       172 ~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          172 VIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence            999999999999999999999998      9999999999999999999999999888877654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.15  E-value=2.3e-10  Score=100.58  Aligned_cols=130  Identities=8%  Similarity=0.008  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC---
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---VP---   78 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l---dP---   78 (401)
                      ..+..+...|..+...|+|++|+.+|.+++.+..  ++.+....++.++|.+|..+|++++|+..+.+++++   .+   
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            6788999999999999999999999999999642  122457889999999999999999999999999998   44   


Q ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc------HHHHHHHHHHHHHHHHHHHH
Q psy4703          79 -DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        79 -~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~------~~~~L~~l~~~~~~~~~a~~  136 (401)
                       ....+++++|.++..+|++++|+..+++++.+.+....      +...++.++...++..++..
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  168 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ  168 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence             33567999999999999999999999999987543221      23556666666666554443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.15  E-value=2.3e-10  Score=91.06  Aligned_cols=72  Identities=15%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~  116 (401)
                      .++.+++++|.+|+.+|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.+..
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            488999999999999999999999999999999999999999999999999999999999999999875443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.14  E-value=4.4e-10  Score=101.74  Aligned_cols=135  Identities=16%  Similarity=0.088  Sum_probs=115.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN----QNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg----~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ..++.++...|..++..+++++|+.+|+++++..      ++.+++++|.+|.. +    ++++|+.+|+++++  +.++
T Consensus        15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~   85 (212)
T 3rjv_A           15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSK   85 (212)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCH
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCH
Confidence            3578899999999999999999999999999887      78999999999998 7    99999999999965  6799


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--CccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          82 KALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        82 kA~~~~a~a~~~----lg~~eeA~~~~~kal~l~P~--~~~~~~~L~~l~~~----~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      .+++++|.+|..    .+++++|+.+|+++++..|.  ++.+...|+.++..    .++.        .++..+|+++..
T Consensus        86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~--------~~A~~~~~~A~~  157 (212)
T 3rjv_A           86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD--------VKASEYFKGSSS  157 (212)
T ss_dssp             HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH--------HHHHHHHHHHHH
Confidence            999999999998    99999999999999999883  48889999988876    3333        334557888877


Q ss_pred             CCCChh
Q psy4703         152 TSAPMD  157 (401)
Q Consensus       152 ~~~~~~  157 (401)
                      .+.+..
T Consensus       158 ~~~~~~  163 (212)
T 3rjv_A          158 LSRTGY  163 (212)
T ss_dssp             TSCTTH
T ss_pred             cCCCHH
Confidence            544433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.14  E-value=1.5e-10  Score=110.75  Aligned_cols=107  Identities=11%  Similarity=0.106  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---   80 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---   80 (401)
                      ..+..+.+.|+.+...|+|++|+.+|++|+++. +.   ....+.++.++|.+|.. |+|++|+.+|++++++.|..   
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY-VENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            346678888999999999999999999999886 32   12246788899999988 99999999999999987643   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q psy4703          81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (401)
Q Consensus        81 ---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~  115 (401)
                         ..++.++|.+|..+|+|++|+..|++++++.|.+.
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence               57889999999999999999999999999877654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.13  E-value=1.2e-09  Score=103.40  Aligned_cols=124  Identities=15%  Similarity=0.076  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH--
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL---EIVPDDP--   81 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL---~ldP~~~--   81 (401)
                      ..+...|..+...|+|++|+.+|.+++.+. +.   ......++.++|.+|..+|+|++|+.+|++++   +..|++.  
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~  194 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHTTC-CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence            445678888999999999999999999876 32   12236799999999999999999999999999   5566643  


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------ccHHHHHHHHHHHHHHHHHH
Q psy4703          82 --KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        82 --kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~------~~~~~~L~~l~~~~~~~~~a  134 (401)
                        .+++++|.+|..+|+|++|+..|++++++.++.      ..+...++.++..+++..++
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence              699999999999999999999999999886531      45566777777777766555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.13  E-value=1.9e-10  Score=120.33  Aligned_cols=124  Identities=9%  Similarity=0.071  Sum_probs=116.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVP   78 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g--~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~ldP   78 (401)
                      |+.+|++..+|..+|..+.+.|  +|++|+.+|.++++++ |.   +..+|.+|+.+..++| .+++++++++++|+.+|
T Consensus       100 l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~---N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p  175 (567)
T 1dce_A          100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cc---cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence            5679999999999999999999  7799999999999999 77   9999999999999999 99999999999999999


Q ss_pred             CCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAI--------------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~l--------------g~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                      .+..||+.|+.++..+              +.+++|++++.+|+.++|+|..++..++-+....+
T Consensus       176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~  240 (567)
T 1dce_A          176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE  240 (567)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred             CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence            9999999999999986              66899999999999999999999999887766543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=7.5e-10  Score=91.93  Aligned_cols=101  Identities=9%  Similarity=0.030  Sum_probs=91.6

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~  120 (401)
                      +.....++.+|.+++..|+|++|+..|+++++++|++   ..+++.+|.+|..+|+|++|+..|+++++++|++..++..
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            4588999999999999999999999999999999988   8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703         121 LSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus       121 L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (401)
                      ++.++...++..++..        +|+.++..
T Consensus       105 ~a~~~~~~~~~~~A~~--------~~~~al~~  128 (148)
T 2dba_A          105 RSQALEKLGRLDQAVL--------DLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHTCHHHHHH--------HHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH--------HHHHHHHc
Confidence            9999988887755444        67777663

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.13  E-value=5.1e-10  Score=109.57  Aligned_cols=131  Identities=12%  Similarity=0.078  Sum_probs=101.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--   78 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~----~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP--   78 (401)
                      .+..+..+...|..++..|+++.|+.+|.+|+++. +..    +..+.++.++|.+|..+|+|++|+..|.+++++.+  
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  215 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY-QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI  215 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence            45567788888888888888888888888888876 421    23567788888888888888888888888888643  


Q ss_pred             ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          79 ----DDPKALFRRCQAYEAIGKFEEAYTDAKHIHR-----VEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        79 ----~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~-----l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                          ....+++++|.+|..+|++++|+..|+++++     .+|....+...++.++...++..++..
T Consensus       216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  282 (378)
T 3q15_A          216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ  282 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence                1245788888888888888888888888888     666666777778888877777654444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.13  E-value=7e-10  Score=89.60  Aligned_cols=104  Identities=13%  Similarity=0.126  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------ccHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-------KAIQ  118 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~-------~~~~  118 (401)
                      .+..++.+|.+++..|+|++|+..+++++..+|.++.+++.+|.++..+|++++|+..|++++.++|++       ..+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999999999999877       6677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChh
Q psy4703         119 PVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMD  157 (401)
Q Consensus       119 ~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  157 (401)
                      ..++.++...++...+        ..+|+.+....++..
T Consensus        83 ~~la~~~~~~~~~~~A--------~~~~~~~~~~~~~~~  113 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDA--------IHFYNKSLAEHRTPD  113 (131)
T ss_dssp             HHHHHHHHHTTCHHHH--------HHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHhccHHHH--------HHHHHHHHHhCCCHH
Confidence            7777777777666444        346777766433433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.12  E-value=2.2e-09  Score=85.67  Aligned_cols=104  Identities=20%  Similarity=0.288  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      ....++++|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|+++++++|.+..++..++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChh
Q psy4703         126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMD  157 (401)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~  157 (401)
                      ...++..++.        .+|+.+.. .|.+..
T Consensus        88 ~~~~~~~~A~--------~~~~~~~~~~~~~~~  112 (125)
T 1na0_A           88 YKQGDYDEAI--------EYYQKALELDPNNAE  112 (125)
T ss_dssp             HHTTCHHHHH--------HHHHHHHHHCTTCHH
T ss_pred             HHhcCHHHHH--------HHHHHHHHhCCCcHH
Confidence            8877765443        36666666 344333

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.12  E-value=4.4e-10  Score=106.32  Aligned_cols=125  Identities=13%  Similarity=0.040  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESH---ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-------VPDD   80 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~---~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-------dP~~   80 (401)
                      .+...|..+...|+|++|+.+|.+++.+. +...   ....++.++|.+|..+|+|++|+.+|+++++.       .+..
T Consensus       117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (293)
T 3u3w_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTC-CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence            34458888888999999999999999976 3211   23567999999999999999999999999953       2334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------ccHHHHHHHHHHHHHH-HHHHHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTK-RMQENE  136 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~------~~~~~~L~~l~~~~~~-~~~a~~  136 (401)
                      +.+++++|.+|..+|+|++|+..+++++++.+..      ..+...++.++..+++ ..++..
T Consensus       196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~  258 (293)
T 3u3w_A          196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            5689999999999999999999999999987644      4567777777777763 344433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.12  E-value=3.2e-11  Score=123.34  Aligned_cols=111  Identities=16%  Similarity=0.166  Sum_probs=99.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      ++.+|+.+..+...|..++..|+|++|+.+|+++++++ |+   ++.+++++|.+|..+|+|++|+.+|+++++++|++.
T Consensus        33 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~  108 (477)
T 1wao_1           33 IELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KK---YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  108 (477)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            45688999999999999999999999999999999999 76   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCCcc
Q psy4703          82 KALFRRCQA--YEAIGKFEEAYTDAK-----------HIHRVEPTNKA  116 (401)
Q Consensus        82 kA~~~~a~a--~~~lg~~eeA~~~~~-----------kal~l~P~~~~  116 (401)
                      .++..++.+  +...|+|++|+..++           ++++++|+...
T Consensus       109 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~  156 (477)
T 1wao_1          109 DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG  156 (477)
T ss_dssp             THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence            999999999  899999999999999           88888887543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.12  E-value=5.5e-11  Score=103.68  Aligned_cols=76  Identities=14%  Similarity=0.226  Sum_probs=70.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC----------
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDY----------ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN----------   61 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y----------~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg----------   61 (401)
                      ++.+|++++.|.+.|..+...|++          ++|+..|++||+++ |+   ...+|+++|.+|..+|          
T Consensus        29 i~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~---~~~A~~~LG~ay~~lg~l~P~~~~a~  104 (158)
T 1zu2_A           29 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PK---KDEAVWCIGNAYTSFAFLTPDETEAK  104 (158)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cC---cHHHHHHHHHHHHHhcccCcchhhhh
Confidence            568999999999999999998875          59999999999999 77   9999999999999885          


Q ss_pred             -CHHHHHHHHHHHHHhCCCCH
Q psy4703          62 -QNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus        62 -~y~~Ai~~~~kAL~ldP~~~   81 (401)
                       +|++|+.+|++|++++|++.
T Consensus       105 g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A          105 HNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCH
T ss_pred             ccHHHHHHHHHHHHHhCCCCH
Confidence             89999999999999999975

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.10  E-value=2.6e-10  Score=111.58  Aligned_cols=132  Identities=14%  Similarity=0.185  Sum_probs=97.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCC-----------------HHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQ-----------------NDK   65 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~-----------------y~~   65 (401)
                      +|..+..+...|..++..|+|++|+.+|.+++++.+  ++.+....++.++|.+|..+|+                 |++
T Consensus       122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~  201 (411)
T 4a1s_A          122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR  201 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence            466677788888888888888888888888887741  1123467788888888888888                 888


Q ss_pred             HHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc------HHHHHHHHHHHHHHHHH
Q psy4703          66 VIEDCSKSLEIV------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVTKRMQ  133 (401)
Q Consensus        66 Ai~~~~kAL~ld------P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~------~~~~L~~l~~~~~~~~~  133 (401)
                      |+..+.+++++.      +....+++.+|.+|..+|++++|+..|++++++.|....      +...++.++...++..+
T Consensus       202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  281 (411)
T 4a1s_A          202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED  281 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence            888888887763      334567888888888888888888888888888775544      66667777766666655


Q ss_pred             HHH
Q psy4703         134 ENE  136 (401)
Q Consensus       134 a~~  136 (401)
                      +..
T Consensus       282 A~~  284 (411)
T 4a1s_A          282 AAE  284 (411)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.09  E-value=5.1e-10  Score=106.98  Aligned_cols=125  Identities=13%  Similarity=0.069  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--D----   80 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~--~----   80 (401)
                      ..+...|+.+...|+|++|+.+|.+++++. +.   ......+|.++|.+|..+|+|++|+.+|++++++.+.  +    
T Consensus        37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~  115 (307)
T 2ifu_A           37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAH-ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA  115 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            344555788999999999999999999997 42   1234678999999999999999999999999998532  2    


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------ccHHHHHHHHHHHHHHHHHHHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~------~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ..++.++|.+|.. |++++|+.+|++++++.|..      ..++..++.++..+++..++..
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  176 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA  176 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5689999999999 99999999999999998754      3456677777777777765554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.09  E-value=2.5e-09  Score=99.88  Aligned_cols=104  Identities=15%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHHHHHcCC--------------------HH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQ--------------------ND   64 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---~~~~~~~~~n~a~~y~klg~--------------------y~   64 (401)
                      .+..+...|..++..|+|++|+.+|.+++++. |.   .+....++.++|.+|..+|+                    ++
T Consensus        82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (338)
T 3ro2_A           82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS-RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ  160 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence            34444455555555555555555555555443 21   11223345555555555555                    55


Q ss_pred             HHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703          65 KVIEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP  112 (401)
Q Consensus        65 ~Ai~~~~kAL~l------dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P  112 (401)
                      +|+..+++++.+      .|....++..+|.++..+|++++|+..+++++++.|
T Consensus       161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            555555555444      122233455555555555555555555555554443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.09  E-value=3.9e-10  Score=91.82  Aligned_cols=83  Identities=13%  Similarity=0.040  Sum_probs=75.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      +|..+..+...|..++..|+|++|+.+|+++++++ |+   +..+++++|.+|..+|++++|+..+.++++.+|+++...
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PN---HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            69999999999999999999999999999999999 77   799999999999999999999999999999999998765


Q ss_pred             HHHHHHH
Q psy4703          85 FRRCQAY   91 (401)
Q Consensus        85 ~~~a~a~   91 (401)
                      .....+.
T Consensus        99 ~~~~ai~  105 (117)
T 3k9i_A           99 SYKQAIL  105 (117)
T ss_dssp             HTHHHHH
T ss_pred             HHHHHHH
Confidence            4443333

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.07  E-value=8.8e-10  Score=108.20  Aligned_cols=122  Identities=12%  Similarity=-0.009  Sum_probs=69.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-N-QNDKVIEDCSKSLEIVP   78 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g-~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl-g-~y~~Ai~~~~kAL~ldP   78 (401)
                      |..+|++..++..+|..+...| .+++++.++++++..+ |.   +..+|..|+.++..+ + ++++++..|+++|+.+|
T Consensus        81 L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PK---ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp  156 (349)
T 3q7a_A           81 VRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LK---SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP  156 (349)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CC---CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT
T ss_pred             HHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Confidence            3445555555555555555555 3555555555555555 44   555555555555555 4 55555555555555555


Q ss_pred             CCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIGKFE--------EAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~e--------eA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      .+..+|..|+.++..+|.++        +++..+.++++.+|.|-.++...+.+...
T Consensus       157 kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          157 KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS  213 (349)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            55555555555555555555        55555555555555555555555544443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.06  E-value=4.2e-09  Score=108.17  Aligned_cols=113  Identities=11%  Similarity=0.055  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----VPD   79 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-----dP~   79 (401)
                      +....+.+..+..+|+|++|+..|.+++++..    |++|..+..+.|+|.+|..+|+|++|+..|+++|++     .|+
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            34455667778899999999999999998753    667889999999999999999999999999999987     355


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCccHHHHH
Q psy4703          80 D---PKALFRRCQAYEAIGKFEEAYTDAKHIHRV-----EPTNKAIQPVL  121 (401)
Q Consensus        80 ~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l-----~P~~~~~~~~L  121 (401)
                      +   ...+.++|.+|..+|+|++|...|++|+++     -|+++.+...+
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  438 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE  438 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            5   557999999999999999999999999975     67777666544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.05  E-value=3.8e-09  Score=99.95  Aligned_cols=91  Identities=11%  Similarity=0.056  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      .+..++++|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|+|++|+.+|+++++++|++..++..++.++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4703         126 AIVTKRMQENE  136 (401)
Q Consensus       126 ~~~~~~~~a~~  136 (401)
                      ..+++..++..
T Consensus        83 ~~~g~~~~A~~   93 (281)
T 2c2l_A           83 LEMESYDEAIA   93 (281)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHcCCHHHHHH
Confidence            99988866655

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.04  E-value=1.9e-09  Score=84.29  Aligned_cols=69  Identities=16%  Similarity=0.293  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Q psy4703          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK-ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ  118 (401)
Q Consensus        50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k-A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~  118 (401)
                      .+++|.+++..|+|++|+..|+++++.+|+++. +++.+|.+|..+|++++|+..|+++++++|++..++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            367899999999999999999999999999999 999999999999999999999999999999998876

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.03  E-value=1.4e-10  Score=113.09  Aligned_cols=103  Identities=17%  Similarity=0.119  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~   89 (401)
                      ..+.+.|..+++.|+|++|+.+|+++++++ |+   +..+|+++|.+|+.+|+|++|+.+|+++++++|++..++..++.
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~  306 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EK---NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA  306 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            378999999999999999999999999999 76   89999999999999999999999999999999999999999999


Q ss_pred             H-HHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703          90 A-YEAIGKFEEAYTDAKHIHRVEPTNKA  116 (401)
Q Consensus        90 a-~~~lg~~eeA~~~~~kal~l~P~~~~  116 (401)
                      + ....+.++.+...|++++..+|+++.
T Consensus       307 l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          307 LAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            8 45667888999999999999998764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.03  E-value=1e-09  Score=87.22  Aligned_cols=87  Identities=13%  Similarity=0.185  Sum_probs=72.8

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DP   81 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~--~~   81 (401)
                      .+|+++..+...|..++..|+|++|+.+|+++++++ |+   +..+|+++|.+|..+|++++|+..|++++++.|.  +.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~   77 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ   77 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence            579999999999999999999999999999999999 76   7889999999999999999999999999999763  44


Q ss_pred             HHHHHHHHHHHHc
Q psy4703          82 KALFRRCQAYEAI   94 (401)
Q Consensus        82 kA~~~~a~a~~~l   94 (401)
                      .+...+..++...
T Consensus        78 ~~~~~l~~~l~~~   90 (100)
T 3ma5_A           78 KDLSELQDAKLKA   90 (100)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHc
Confidence            4444444444433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.03  E-value=1.5e-09  Score=98.20  Aligned_cols=114  Identities=13%  Similarity=0.008  Sum_probs=103.2

Q ss_pred             hhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q psy4703           6 MNDYNKLKESGNSAFKQG----DYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIV   77 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g----~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k----lg~y~~Ai~~~~kAL~ld   77 (401)
                      ..++.++...|..+.. +    ++++|+.+|+++++..      ++.+++++|.+|..    .+++++|+.+|+++++..
T Consensus        47 ~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  119 (212)
T 3rjv_A           47 QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS  119 (212)
T ss_dssp             TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST
T ss_pred             cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC
Confidence            3467888999999998 7    9999999999998766      78899999999998    899999999999999998


Q ss_pred             C--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          78 P--DDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        78 P--~~~kA~~~~a~a~~~----lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      |  .++.+++++|.+|..    .+++++|+.+|++++++ |.++.+...|+.++..
T Consensus       120 ~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          120 ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            8  459999999999999    99999999999999999 7778888888888764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.01  E-value=2.5e-09  Score=101.96  Aligned_cols=114  Identities=7%  Similarity=-0.054  Sum_probs=89.5

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE-RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PD   79 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~-~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--P~   79 (401)
                      ..+|.+. ..+..|..+++.|+|++|+.+|++++...  + +. ...+++++|.++..+|++++|+.+|++++.-.  |.
T Consensus       130 ~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d-~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~  205 (282)
T 4f3v_A          130 VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP--D-KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA  205 (282)
T ss_dssp             CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT
T ss_pred             hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC--C-cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc
Confidence            4567777 88888888888888888888888776643  1 22 24578888888888888888888888888554  55


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          80 -DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        80 -~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                       .+.+++++|.++..+|+.++|...|++++..+|+ +.+...|
T Consensus       206 ~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          206 CARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence             5678888888888888888888888888888888 6665555

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.01  E-value=8.3e-09  Score=97.49  Aligned_cols=165  Identities=15%  Similarity=0.019  Sum_probs=116.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD--   80 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~---~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~--   80 (401)
                      +.....+.+.+..++..|+|++|+..|.+++... +..+..   ...+..+|.+|...++|++|+.++++++.+.+..  
T Consensus        72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~  150 (293)
T 3u3w_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc
Confidence            3445667778999999999999999999999977 543332   3355569999999999999999999999975432  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4703          81 ----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP---TN----KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV  149 (401)
Q Consensus        81 ----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P---~~----~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~  149 (401)
                          ..++.++|.+|..+|+|++|+..|++++++..   .+    ..+...++.++..+++..++...+ .++.++....
T Consensus       151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~-~~al~~~~~~  229 (293)
T 3u3w_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV-NKAIEISCRI  229 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHc
Confidence                44799999999999999999999999996321   22    346678888888888776665522 2222222222


Q ss_pred             hcCCCChhHHHHHHHHHHHhhhc
Q psy4703         150 FDTSAPMDKRVTAVNNLVVLARE  172 (401)
Q Consensus       150 ~~~~~~~~~~~~a~~~L~~l~~~  172 (401)
                      ...............++..+++.
T Consensus       230 ~~~~~~~~~~~~lg~~~~~~g~~  252 (293)
T 3u3w_A          230 NSMALIGQLYYQRGECLRKLEYE  252 (293)
T ss_dssp             TBCTTHHHHHHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHHHHHHHHhCCc
Confidence            11222234445555556666643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.99  E-value=3.7e-09  Score=108.38  Aligned_cols=158  Identities=11%  Similarity=0.050  Sum_probs=121.3

Q ss_pred             ccCChhHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hcCCCCcchHHHHHHHHHHHHHcCCHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFK-------QGDYE-------TALDFYTKALK-VTAEESHERATCLKNRAAVYLKQNQNDKV   66 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~-------~g~y~-------eAi~~y~~Al~-l~~p~~~~~~~~~~n~a~~y~klg~y~~A   66 (401)
                      |..+|.++..|...|..+..       .|+++       +|+..|++|++ +. |+   ...+|.++|..+.+.|++++|
T Consensus       265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~-p~---~~~l~~~~~~~~~~~g~~~~A  340 (530)
T 2ooe_A          265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KK---NMLLYFAYADYEESRMKYEKV  340 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC-SS---CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHhcCCHHHH
Confidence            34568889999999999886       79987       99999999998 78 76   899999999999999999999


Q ss_pred             HHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy4703          67 IEDCSKSLEIVPDDP-KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF-AIVTKRMQENEQLQNKVHN  144 (401)
Q Consensus        67 i~~~~kAL~ldP~~~-kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~-~~~~~~~~a~~~~~~~~~~  144 (401)
                      ...|+++++++|.++ .+|..+|.++...|++++|...|+++++..|.+..+....+.+. ...++.        ..+..
T Consensus       341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~--------~~A~~  412 (530)
T 2ooe_A          341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK--------SVAFK  412 (530)
T ss_dssp             HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH--------HHHHH
T ss_pred             HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh--------hHHHH
Confidence            999999999999986 69999999999999999999999999999887655544333221 112222        33455


Q ss_pred             HHHHhhc-CCCChhHHHHHHHHHHHhhh
Q psy4703         145 MFKYVFD-TSAPMDKRVTAVNNLVVLAR  171 (401)
Q Consensus       145 ~~~~~~~-~~~~~~~~~~a~~~L~~l~~  171 (401)
                      +|+.++. .|.+.......+..+...++
T Consensus       413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~  440 (530)
T 2ooe_A          413 IFELGLKKYGDIPEYVLAYIDYLSHLNE  440 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHhCCC
Confidence            7777777 44444443333333333333

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.98  E-value=7.6e-09  Score=106.01  Aligned_cols=137  Identities=7%  Similarity=-0.043  Sum_probs=120.1

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER-ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~-~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      ..|++...+...|..+...|++++|...|++++++. |.   + ..+|.+.+.++.+.|++++|...|.+|++..|.+..
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~  391 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH  391 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-cc---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence            579999999999999999999999999999999998 75   4 358999999999999999999999999999998888


Q ss_pred             HHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703          83 ALFRRCQA-YEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus        83 A~~~~a~a-~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (401)
                      .+...+.+ +...|++++|...|+++++.+|+++.++..++.+....++..        .+..+|+++...
T Consensus       392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~--------~Ar~~~~~al~~  454 (530)
T 2ooe_A          392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN--------NTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHH--------HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHh--------hHHHHHHHHHhc
Confidence            88776655 446999999999999999999999999999988877766653        345578888774

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.98  E-value=2.3e-09  Score=105.99  Aligned_cols=119  Identities=11%  Similarity=0.091  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLE----------------IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~----------------ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~  109 (401)
                      .+..+.++|.++++.|+|++|+..|+++++                ++|.+..+|+++|.+|..+|+|++|+.+|+++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            456789999999999999999999999999                7888899999999999999999999999999999


Q ss_pred             hCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhhhc
Q psy4703         110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLARE  172 (401)
Q Consensus       110 l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~  172 (401)
                      ++|++..++..++.++..+++..++..        .|+.++. .|.+..........+..+++.
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~--------~l~~Al~l~P~~~~~~~~l~~~~~~~~~~  357 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALA--------DLKKAQEIAPEDKAIQAELLKVKQKIKAQ  357 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHH--------HHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888755544        6777777 444444444444444444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.96  E-value=4.6e-09  Score=87.39  Aligned_cols=105  Identities=22%  Similarity=0.302  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CC
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP------DD   80 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP------~~   80 (401)
                      +..+...|..++..|+|++|+.+|.+++++.+  ++.+....++.++|.+|..+|++++|+..+++++++.+      ..
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  128 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE  128 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhH
Confidence            46788999999999999999999999999872  12233477899999999999999999999999998743      23


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                      ..+++.+|.++..+|++++|+..+++++++...
T Consensus       129 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          129 GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999987543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.96  E-value=2.5e-09  Score=86.30  Aligned_cols=90  Identities=10%  Similarity=0.076  Sum_probs=77.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--   79 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~--   79 (401)
                      ++.+|.++..+...|..++..|+|++|+.+|+++++++ |+   ...+|+++|.+|..+|++++|+..|+++++++|.  
T Consensus        12 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~   87 (115)
T 2kat_A           12 LAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PT---YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG   87 (115)
T ss_dssp             HTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            56789999999999999999999999999999999999 76   7889999999999999999999999999999884  


Q ss_pred             CHHHHHHHHHHHHHcC
Q psy4703          80 DPKALFRRCQAYEAIG   95 (401)
Q Consensus        80 ~~kA~~~~a~a~~~lg   95 (401)
                      +..++..+...+..++
T Consensus        88 ~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           88 DQQVVKELQVFLRRLA  103 (115)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhc
Confidence            4455555544444333

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.95  E-value=5.5e-08  Score=95.38  Aligned_cols=165  Identities=10%  Similarity=-0.040  Sum_probs=126.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~ldP~~   80 (401)
                      |...|+-..++-.........+..++|+.+++++|.++ |+   +..+|..|+.++..++ .+++++..++.+|..+|++
T Consensus        47 i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn  122 (349)
T 3q7a_A           47 IMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMN-PA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS  122 (349)
T ss_dssp             BCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC
T ss_pred             eeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-ch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Confidence            34455666666666666666677789999999999999 77   9999999999999999 5999999999999999999


Q ss_pred             HHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChh
Q psy4703          81 PKALFRRCQAYEAI-G-KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMD  157 (401)
Q Consensus        81 ~kA~~~~a~a~~~l-g-~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~  157 (401)
                      ..+|+.|+.++..+ + ++++++..+.++++++|.|..++...+-+...++.........-....++++.++. .+.+..
T Consensus       123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S  202 (349)
T 3q7a_A          123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS  202 (349)
T ss_dssp             HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999 8 99999999999999999999999988888777765431000001123345666666 445544


Q ss_pred             HHHHHHHHHHHhh
Q psy4703         158 KRVTAVNNLVVLA  170 (401)
Q Consensus       158 ~~~~a~~~L~~l~  170 (401)
                      .--.+...+..++
T Consensus       203 AW~~R~~lL~~l~  215 (349)
T 3q7a_A          203 AWGWRWYLRVSRP  215 (349)
T ss_dssp             HHHHHHHHHTTST
T ss_pred             HHHHHHHHHHhcc
Confidence            4444444443333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.89  E-value=1.4e-08  Score=88.86  Aligned_cols=114  Identities=13%  Similarity=0.040  Sum_probs=88.5

Q ss_pred             HHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHH
Q psy4703          19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE------IVPDDPKALFRRCQAYE   92 (401)
Q Consensus        19 ~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~------ldP~~~kA~~~~a~a~~   92 (401)
                      ++..|+|++|...++.... + |  .....++.++|.+|...|+|++|+..+.++++      ..|....+++++|.++.
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~-~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   77 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-H-P--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER   77 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-S-T--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcC-C-h--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            5678999999996555433 5 3  24789999999999999999999999999999      44566789999999999


Q ss_pred             HcCCHHHHHHHHHHHHhh---CCCC----ccHHHHHHHHHHHHHHHHHHHH
Q psy4703          93 AIGKFEEAYTDAKHIHRV---EPTN----KAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        93 ~lg~~eeA~~~~~kal~l---~P~~----~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      .+|++++|+..+++++++   .|++    ..+...++.++...++..++..
T Consensus        78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  128 (203)
T 3gw4_A           78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ  128 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            999999999999999998   4433    3446677777777777655544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.87  E-value=1.9e-08  Score=101.72  Aligned_cols=110  Identities=8%  Similarity=-0.007  Sum_probs=92.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----VPDD---   80 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-----dP~~---   80 (401)
                      .+.+......|+|++|+..|++++++..    |+++..+..+.|+|.+|..+|+|++|+..|+++|++     .|++   
T Consensus       302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  381 (433)
T 3qww_A          302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV  381 (433)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            3445555567899999999999998643    678889999999999999999999999999999977     3555   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCccHHHHHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRV-----EPTNKAIQPVLS  122 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l-----~P~~~~~~~~L~  122 (401)
                      ...++++|.+|..+|+|++|+..|++|+++     -|+++.+.....
T Consensus       382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~  428 (433)
T 3qww_A          382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ  428 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            557999999999999999999999999986     577776665443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.86  E-value=4.2e-08  Score=99.01  Aligned_cols=119  Identities=8%  Similarity=0.047  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----VPD   79 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-----dP~   79 (401)
                      +.........+..+|+|++|+..|++++++..    |+++.....+.|+|.+|..+|+|++|+..|.++|++     .|+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            34445556678889999999999999998643    677889999999999999999999999999999977     355


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCccHHHHHHHHHHH
Q psy4703          80 D---PKALFRRCQAYEAIGKFEEAYTDAKHIHRV-----EPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        80 ~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l-----~P~~~~~~~~L~~l~~~  127 (401)
                      +   ...++++|.+|..+|+|++|+..|++|+++     -|+++.+...+..+...
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~  422 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC  422 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            5   457999999999999999999999999976     67887777665544443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.84  E-value=1.2e-08  Score=97.15  Aligned_cols=133  Identities=15%  Similarity=0.066  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD--PKALFRR   87 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~--~kA~~~~   87 (401)
                      ......+..+...|+|++|.+.|..++... |+   .. .++.+|.++++.++|++|+..+++++...+..  ..+++.+
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~---~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L  177 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAG-SE---HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH  177 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CH---HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc---hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence            344567899999999999999999998888 65   66 89999999999999999999999887764222  3589999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC--CC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVE--PT-NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP  155 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~--P~-~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  155 (401)
                      |.++..+|++++|+..|++++.-.  |. ...+...++.+...+++..++..        .|+.+....+.
T Consensus       178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~--------~l~~a~a~~P~  240 (282)
T 4f3v_A          178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA--------LLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH--------HHHHHHHHSCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHhcCCc
Confidence            999999999999999999998543  54 45678888888888888755544        78888874444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.82  E-value=3.4e-08  Score=85.29  Aligned_cols=100  Identities=10%  Similarity=0.027  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHH
Q psy4703          25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIV-P-DDPKALFRRCQAYEAIGKFEE   99 (401)
Q Consensus        25 y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg---~y~~Ai~~~~kAL~ld-P-~~~kA~~~~a~a~~~lg~~ee   99 (401)
                      ...+.+.|.+.++.+ |.   ...+.++.|.|+.+.+   +.++++..++.+++.+ | ++.+++|++|.+|+++|+|++
T Consensus        14 l~~~~~~y~~e~~~~-~~---~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SV---SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CC---CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHccC-CC---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence            456777888888877 54   7899999999999988   7789999999999999 7 679999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703         100 AYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus       100 A~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      |.++++++++++|+|.++......+...+
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999888776555443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.78  E-value=8.3e-08  Score=75.95  Aligned_cols=77  Identities=18%  Similarity=0.084  Sum_probs=69.2

Q ss_pred             cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703          44 HERATCLKNRAAVYLKQNQ---NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~---y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~  120 (401)
                      |.++.++..+|.+++..++   .++|...+.++|++||+++.+++.+|.+++..|+|++|+..|+++++.+|.++.....
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i   82 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTI   82 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Confidence            3489999999999987666   7999999999999999999999999999999999999999999999999996554333

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.74  E-value=3.9e-07  Score=92.23  Aligned_cols=112  Identities=13%  Similarity=0.055  Sum_probs=98.0

Q ss_pred             hhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q psy4703           6 MNDYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIV   77 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~----~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k----lg~y~~Ai~~~~kAL~ld   77 (401)
                      +.++.++...|..++.    .+++++|+.+|+++++..      ++.+++++|.+|..    .+++++|+.+|+++++. 
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  108 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-  108 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence            4567888999999998    899999999999999877      68899999999999    89999999999999875 


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          78 PDDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        78 P~~~kA~~~~a~a~~~----lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                       .++.+++++|.+|..    .+++++|+..|+++.+.  +++.+...|+.++..
T Consensus       109 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  159 (490)
T 2xm6_A          109 -GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFE  159 (490)
T ss_dssp             -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence             588999999999998    88999999999998765  577888888888765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.73  E-value=1.5e-07  Score=91.16  Aligned_cols=127  Identities=13%  Similarity=0.103  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--------   77 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~---~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--------   77 (401)
                      +..+...|..++..|++++|+..|.+++.+. |..   .....++.++|.++...|+|++|+..|++++++.        
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMA-RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            3467788999999999999999999999887 421   1234557889999999999999999999999875        


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-----cHHHHHHHHHHHHHHHHHHHH
Q psy4703          78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK-----AIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        78 P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~-----~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      |....++..+|.++...|++++|...+++++.+.|...     .+...++.++...++..++..
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  195 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS  195 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            33456788899999999999999999999999887532     245566666666666654443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.71  E-value=1.9e-07  Score=90.26  Aligned_cols=127  Identities=9%  Similarity=0.066  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH--ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------   80 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~--~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~------   80 (401)
                      ++.+...|..++..|++++|+.++++++... |...  ....++.++|.+|...|++++|+..+.+++.+.|..      
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            5667788999999999999999999999998 5422  234578899999999999999999999999986533      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CccHHHHHHHHHHHHHHHHHHHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--------NKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~--------~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ..+++.+|.++...|++++|+..|++++++.+.        ...+...++.++...++..++..
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA  156 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            245789999999999999999999999987532        23345567777777776655444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.69  E-value=1.5e-07  Score=75.51  Aligned_cols=80  Identities=21%  Similarity=0.216  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~   85 (401)
                      +...+..|..++..|+|..|+..|.+|++..+++   ......++.++|.||+++|++++|+..++++++++|++..++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4566778888888888888888888887764111   1236677777777777777777777777777777777777766


Q ss_pred             HHH
Q psy4703          86 RRC   88 (401)
Q Consensus        86 ~~a   88 (401)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            665

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.68  E-value=1.9e-07  Score=78.80  Aligned_cols=97  Identities=12%  Similarity=0.087  Sum_probs=79.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (401)
Q Consensus        15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k----lg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a   90 (401)
                      .|..+...+.+++|+.+|+++.+..      ++.+++++|.+|..    .+++++|+.+|+++.+.  .++.+++++|.+
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~  102 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK  102 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            6777777788888888888888887      77888888888888    78888888888888876  678888888888


Q ss_pred             HHH----cCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          91 YEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        91 ~~~----lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      |..    .+++++|+.+|+++.+.  .++.+...|
T Consensus       103 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l  135 (138)
T 1klx_A          103 QYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL  135 (138)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred             HHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            888    88888888888888876  344444444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.68  E-value=3.8e-07  Score=92.34  Aligned_cols=110  Identities=19%  Similarity=0.103  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCC
Q psy4703           8 DYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-----NQNDKVIEDCSKSLEIVP   78 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~----~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl-----g~y~~Ai~~~~kAL~ldP   78 (401)
                      ++.++...|..+..    .+++++|+.+|+++++..      +..+++++|.+|...     +++++|+.+|+++++.  
T Consensus       254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--  325 (490)
T 2xm6_A          254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--  325 (490)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--
T ss_pred             CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--
Confidence            34455555665555    566666666666665544      444555566665555     5566666666655554  


Q ss_pred             CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIG---KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg---~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      .++.+++++|.+|...|   ++++|+.+|+++++.  +++.++..|+.++..
T Consensus       326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  375 (490)
T 2xm6_A          326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQ  375 (490)
T ss_dssp             TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            34455555555555544   555555555555554  345555555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.68  E-value=2.3e-07  Score=74.39  Aligned_cols=79  Identities=14%  Similarity=0.045  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ  118 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-------P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~  118 (401)
                      .+.-.+.+|..++..++|..|+.+++.|++..       +..+..+..+|.++.++|+++.|+..++++++++|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            45667899999999999999999999999973       34678899999999999999999999999999999998887


Q ss_pred             HHHHHH
Q psy4703         119 PVLSRL  124 (401)
Q Consensus       119 ~~L~~l  124 (401)
                      .+++-+
T Consensus        84 ~n~~~~   89 (104)
T 2v5f_A           84 GNLKYF   89 (104)
T ss_dssp             HHHHHH
T ss_pred             hhHHHH
Confidence            777633

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.67  E-value=5.5e-08  Score=99.79  Aligned_cols=108  Identities=11%  Similarity=0.053  Sum_probs=96.5

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l---   76 (401)
                      .+|..+..+.+.|..|..+|+|++|+.+|.+++++..    |++|..+..+.|+|.+|..+|+|++|+..|++|+++   
T Consensus       346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~  425 (490)
T 3n71_A          346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV  425 (490)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            5788899999999999999999999999999998642    778999999999999999999999999999999986   


Q ss_pred             --CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4703          77 --VPDDP---KALFRRCQAYEAIGKFEEAYTDAKHIHRVE  111 (401)
Q Consensus        77 --dP~~~---kA~~~~a~a~~~lg~~eeA~~~~~kal~l~  111 (401)
                        .|+++   +.+-.+++++..++.|.+|...|+++.+-.
T Consensus       426 ~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          426 THGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              46664   456789999999999999999999886543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.55  E-value=7.5e-07  Score=89.91  Aligned_cols=108  Identities=14%  Similarity=0.087  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHH
Q psy4703          10 NKLKESGNSAFKQG---DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ----NQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g---~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl----g~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      .++...|..+...|   ++++|+..|+++++.. |.   .+..++++|.+|...    +++++|+.+|+++.   |+++.
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~---~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~  249 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TV---TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA  249 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CS---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CH---HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH
Confidence            37788899999999   9999999999999998 54   677778899999766    78999999999988   88999


Q ss_pred             HHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703          83 ALFRRCQA-Y--EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (401)
Q Consensus        83 A~~~~a~a-~--~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~  126 (401)
                      +++++|.+ +  ...+++++|+.+|+++.+.  +++.+...|+.++.
T Consensus       250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            99999998 4  5788999999999998864  57888888888876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.54  E-value=9.1e-06  Score=91.38  Aligned_cols=108  Identities=15%  Similarity=0.226  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP-----------   78 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP-----------   78 (401)
                      ..+...|..++..|+|++|+.+|.+|            ..|..+|.||.++|+|++|++.+.+|...++           
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 1263 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhh
Confidence            46678999999999999999999984            2678899999999999999999998855543           


Q ss_pred             --------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          79 --------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        79 --------------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                                    .++..+..++..|...|.|++|+..+++++.++|.+..+...|+.++...+
T Consensus      1264 ~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1264 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             hHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence                          245566678889999999999999999999999999889888888776543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.46  E-value=8.7e-07  Score=74.65  Aligned_cols=109  Identities=17%  Similarity=0.124  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q psy4703          23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA----IGKFE   98 (401)
Q Consensus        23 g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~----lg~~e   98 (401)
                      +++++|+.+|+++.+.. .     +.+.  +|.+|...+.+++|+.+|+++.+.  .++.+++++|.+|..    .++++
T Consensus         9 ~d~~~A~~~~~~aa~~g-~-----~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-E-----MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-C-----TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cCHHHHHHHHHHHHcCC-C-----Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHH
Confidence            47899999999999988 2     2333  999999999999999999999997  689999999999999    99999


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        99 eA~~~~~kal~l~P~~~~~~~~L~~l~~~----~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      +|+.+|+++.+.  .++.+...|+.++..    .++..+        +..+|+++.+
T Consensus        79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~--------A~~~~~~Aa~  125 (138)
T 1klx_A           79 KAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ--------AVKTFEKACR  125 (138)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHH--------HHHHHHHHHH
Confidence            999999999987  678899999988876    444433        3446666655

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.46  E-value=1.2e-06  Score=88.51  Aligned_cols=111  Identities=13%  Similarity=0.094  Sum_probs=69.7

Q ss_pred             CChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHh
Q psy4703           4 NNMNDYNKLKESGNSAFKQ----GDYETALDFYTKALKVTAEESHERATCLKNRAAV-Y--LKQNQNDKVIEDCSKSLEI   76 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~----g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~-y--~klg~y~~Ai~~~~kAL~l   76 (401)
                      ..+..+..+...|..+...    +++++|+.+|+++. ..      ++.+++++|.+ |  ...+++++|+.+|+++++.
T Consensus       208 ~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~  280 (452)
T 3e4b_A          208 RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA  280 (452)
T ss_dssp             TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence            3445555556666666544    56677777777666 22      55566666666 3  3456677777777766654


Q ss_pred             CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          77 VPDDPKALFRRCQAYEAIG-----KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        77 dP~~~kA~~~~a~a~~~lg-----~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                        +++.+++++|.+|. .|     ++++|+.+|+++.   |+++.+...|+.++..
T Consensus       281 --g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          281 --DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             --TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             --CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence              36666777776666 44     6777777776666   6666666666666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.43  E-value=1.1e-06  Score=86.23  Aligned_cols=130  Identities=10%  Similarity=0.066  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP------   78 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~---~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP------   78 (401)
                      ...++...|..|+..|+|++|+++|.+++... +.-   .....++.+++.++...|++++|+..|.+++...+      
T Consensus        54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           54 QETSILELGQLYVTMGAKDKLREFIPHSTEYM-MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            34568899999999999999999999998876 421   12334566777777788888888888888877632      


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCccHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP------TNKAIQPVLSRLFAIVTKRMQENEQL  138 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P------~~~~~~~~L~~l~~~~~~~~~a~~~~  138 (401)
                      .....+.++|.+|...|+|++|+..+++++....      ....+...+++++...++..++...+
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  198 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL  198 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            3367788888888888888888888888876522      12346667777877777777766543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.38  E-value=3.9e-06  Score=82.55  Aligned_cols=125  Identities=10%  Similarity=0.085  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCH-------HHHHH-HHH--HHHH
Q psy4703           9 YNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN-------DKVIE-DCS--KSLE   75 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~---y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y-------~~Ai~-~~~--kAL~   75 (401)
                      +-.++.+|..++..++   +.+|+.+|++|++++ |+   ++.+|..++.||.-...+       ..++. .+.  .++.
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~---~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~  271 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PE---FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP  271 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence            4456778888887655   478999999999999 77   777777766666521111       01111 111  1234


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQL  138 (401)
Q Consensus        76 ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~  138 (401)
                      .+|.++.+|..+|.++...|++++|+..+++|+.++|+ ...+..++.++...++..++...+
T Consensus       272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~  333 (372)
T 3ly7_A          272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAY  333 (372)
T ss_dssp             GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            45666666666666666666666666666666666653 334455666666666665555544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.37  E-value=1.3e-05  Score=77.12  Aligned_cols=128  Identities=14%  Similarity=0.093  Sum_probs=99.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----DP   81 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~----~~   81 (401)
                      +.....+...|..+...|++++|+..+.++|..+ |. +....++...+.+|+++|+.+.|...+++..+.+|+    +-
T Consensus        97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-~~-~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d  174 (310)
T 3mv2_B           97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDND-EA-EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN  174 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-CS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CC-cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch
Confidence            3445556789999999999999999999999988 62 348899999999999999999999999999999984    23


Q ss_pred             HHHHHHHHH--HHHcC--CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703          82 KALFRRCQA--YEAIG--KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        82 kA~~~~a~a--~~~lg--~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ..+..++.+  .+..|  ++.+|+..|+++.+..|+.......+. ++..+++..+++.
T Consensus       175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~  232 (310)
T 3mv2_B          175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG  232 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence            445555555  66667  999999999999888876222222233 6677777766555

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.37  E-value=1.4e-06  Score=85.66  Aligned_cols=126  Identities=13%  Similarity=0.087  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEES--------------HERATCLKNRAAVYLKQNQNDKVIEDCSKSLE   75 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~--------------~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~   75 (401)
                      ....++|..+++.|+|++|++.|.++++.. |..              .....++.++|.+|...|+|++|+..+.+++.
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            456788999999999999999999999998 541              22345789999999999999999999999999


Q ss_pred             hCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------ccHHHHHHHHHHHHHHHHHHHH
Q psy4703          76 IVPDDPK------ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus        76 ldP~~~k------A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~------~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      +.+...+      .+..+|.++...|++++|+..+++++.+.+..      ..+...++.++...++..++..
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA  156 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence            8765433      34557888888999999999999999875532      3456678888888888766655

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.37  E-value=5.3e-06  Score=78.82  Aligned_cols=110  Identities=9%  Similarity=0.034  Sum_probs=95.9

Q ss_pred             cCChhHHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc-----CCHHHH
Q psy4703           3 DNNMNDYNKLKESGNSAFK-----QGD------YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-----NQNDKV   66 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~-----~g~------y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl-----g~y~~A   66 (401)
                      +.+|++++.++..|.....     .|+      ...|...+++|++++ |+ -.+..+|..+|..|.+.     |+.++|
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD-P~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA  223 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW-PS-YQEGAVWNVLTKFYAAAPESFGGGMEKA  223 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHHHSCTTTTCCHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC-CC-cccCHHHHHHHHHHHhCCCccCCCHHHH
Confidence            4578889999888877643     243      477888999999999 76 44678999999999996     999999


Q ss_pred             HHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Q psy4703          67 IEDCSKSLEIVPDD-PKALFRRCQAYEA-IGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        67 i~~~~kAL~ldP~~-~kA~~~~a~a~~~-lg~~eeA~~~~~kal~l~P~~  114 (401)
                      ..+|++||+++|+. ...++.+|..+.. .|++++|...+++++..+|..
T Consensus       224 ~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          224 HTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999999975 9999999999988 599999999999999999874

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.36  E-value=1.5e-06  Score=68.56  Aligned_cols=73  Identities=11%  Similarity=0.035  Sum_probs=67.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           5 NMNDYNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~---y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      +|++++.+...|..++..++   .++|...+.++++++ |+   +..+++.+|..+++.|+|++|+..++++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            68899999999999986666   799999999999999 77   899999999999999999999999999999999843

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.35  E-value=1.1e-05  Score=90.74  Aligned_cols=93  Identities=20%  Similarity=0.238  Sum_probs=78.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcC-------------------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy4703          15 SGNSAFKQGDYETALDFYTKALKVTA-------------------EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE   75 (401)
Q Consensus        15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~-------------------p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~   75 (401)
                      .|..+...|.|++|+..|+++-....                   + +...+.+|+++|.++...|++++|+..|.+|  
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Ae-rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAE-RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence            38888999999999888866532110                   1 2447889999999999999999999999886  


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        76 ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                         +++.+|++.|.++.++|+|++|+++|+.+.+.++.
T Consensus      1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence               88999999999999999999999999999998854

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.25  E-value=9.1e-06  Score=67.71  Aligned_cols=101  Identities=12%  Similarity=0.061  Sum_probs=85.4

Q ss_pred             CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHH
Q psy4703          24 DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK---VIEDCSKSLEIV-P-DDPKALFRRCQAYEAIGKFE   98 (401)
Q Consensus        24 ~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~---Ai~~~~kAL~ld-P-~~~kA~~~~a~a~~~lg~~e   98 (401)
                      ....+...|.+.+..+ +.   .....++.|.++.+..+...   +|..++..+..+ | ..-..+|.+|..++++|+|+
T Consensus        16 ~l~~~~~~y~~e~~~~-~~---s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAG-SV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHS-CC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhccC-CC---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence            4456677788888877 43   78899999999999887777   999999999987 5 56789999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        99 eA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      .|..+++.+|+++|+|.++......+...+
T Consensus        92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999888766555443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.20  E-value=6.4e-06  Score=70.96  Aligned_cols=84  Identities=11%  Similarity=0.036  Sum_probs=72.8

Q ss_pred             CChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703           4 NNMNDYNKLKESGNSAFKQG---DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g---~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~   80 (401)
                      .++.+.+..++.|+.+.+.+   +.++++..++..++.+.|  ..+..+++++|..|+++|+|++|..+++.+|+++|+|
T Consensus        27 ~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           27 AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  104 (152)
T ss_dssp             TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            35667899999999999988   777999999999998723  1378999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy4703          81 PKALFRRCQ   89 (401)
Q Consensus        81 ~kA~~~~a~   89 (401)
                      ..|..-+-.
T Consensus       105 ~QA~~Lk~~  113 (152)
T 1pc2_A          105 NQAKELERL  113 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988765443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.16  E-value=2.1e-05  Score=75.74  Aligned_cols=120  Identities=11%  Similarity=-0.005  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-cchHHHHHHHH--HHHHHcC--CHHHHHHHHHHHHHhCCC--
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRA--AVYLKQN--QNDKVIEDCSKSLEIVPD--   79 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~-~~~~~~~~n~a--~~y~klg--~y~~Ai~~~~kAL~ldP~--   79 (401)
                      ...+.+...+..+++.|+.+.|...+++..+.+ |+. .-.-.+..+++  .+.+..|  ++.+|...|+++.+..|+  
T Consensus       134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~-~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~  212 (310)
T 3mv2_B          134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNAI-EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK  212 (310)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence            788888899999999999999999999999988 510 00123344454  4466666  999999999999888886  


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCccHHHHHHHHHHHHHH
Q psy4703          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV----------EPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus        80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l----------~P~~~~~~~~L~~l~~~~~~  130 (401)
                      ....+++   +++.+|+|++|...++.+++.          +|+|+.+..++..+...+++
T Consensus       213 ~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          213 TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence            3445555   899999999999999988877          58888888777666666654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.04  E-value=1e-05  Score=81.48  Aligned_cols=90  Identities=12%  Similarity=0.103  Sum_probs=76.6

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l---   76 (401)
                      .+|..+..+.+.|..|..+|+|++|+.+|.+++.+..    |++|..+..++|+|.+|..+|+|++|+..+.+|+++   
T Consensus       324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~  403 (429)
T 3qwp_A          324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV  403 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            5778899999999999999999999999999997642    778999999999999999999999999999999987   


Q ss_pred             --CCCCHH---HHHHHHHHHHH
Q psy4703          77 --VPDDPK---ALFRRCQAYEA   93 (401)
Q Consensus        77 --dP~~~k---A~~~~a~a~~~   93 (401)
                        .|+++.   .+.+++.++..
T Consensus       404 ~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          404 THGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HTCTTSHHHHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHH
Confidence              466654   34555555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.03  E-value=1.3e-05  Score=80.81  Aligned_cols=79  Identities=18%  Similarity=0.173  Sum_probs=71.6

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l---   76 (401)
                      .+|..+..+.+.|..|..+|+|++|+.+|++++++..    |++|..+..+.|+|.+|..+|+|++|+..|++|+++   
T Consensus       335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~  414 (433)
T 3qww_A          335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV  414 (433)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            5788899999999999999999999999999998642    778999999999999999999999999999999987   


Q ss_pred             --CCCCHH
Q psy4703          77 --VPDDPK   82 (401)
Q Consensus        77 --dP~~~k   82 (401)
                        .|+++.
T Consensus       415 ~lG~~Hp~  422 (433)
T 3qww_A          415 AHGKDHPY  422 (433)
T ss_dssp             HTCTTCHH
T ss_pred             HcCCCChH
Confidence              477764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.90  E-value=8.3e-05  Score=64.64  Aligned_cols=115  Identities=10%  Similarity=0.138  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C--
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTA--EE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP---D--   79 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~---~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP---~--   79 (401)
                      ..+++....++..|.|+.|+..+..++.+..  |+   ....+.++..+|.+++..++|..|...|.+||....   .  
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3578899999999999999999999877752  22   124567889999999999999999999999976531   1  


Q ss_pred             --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          80 --------------------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        80 --------------------~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                                          +.+..|+.|.||.+++++++|+..++.+- ..-..+.+...|++++
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence                                12678999999999999999999876531 1224566777777765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.89  E-value=0.00032  Score=70.63  Aligned_cols=106  Identities=15%  Similarity=0.235  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP-----------   78 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP-----------   78 (401)
                      .++...|..++..|+|++|..+|+++            ..|..+|.|+.++|+|++|++.|.++.  +|           
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv  188 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV  188 (449)
T ss_dssp             --------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHH
Confidence            37788888888888888888888854            146678888888888888888888772  22           


Q ss_pred             ----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          79 ----------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        79 ----------------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                                      .++.-+..+...|.+.|+|++|+..+++++.+++.+..+...|+.++...+
T Consensus       189 ~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          189 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             HTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence                            122223344578999999999999999999999999999999987776543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.83  E-value=8.1e-05  Score=74.96  Aligned_cols=100  Identities=8%  Similarity=-0.024  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      +......+..+.+.|++.++..+|+     . |+    ...|.++|.+++..|.|++|..+|+++        ..|.++|
T Consensus        94 ~~i~~~Li~~Y~Klg~l~e~e~f~~-----~-pn----~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA  155 (449)
T 1b89_A           94 SYVETELIFALAKTNRLAELEEFIN-----G-PN----NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA  155 (449)
T ss_dssp             ---------------CHHHHTTTTT-----C-C--------------------CTTTHHHHHHHT--------TCHHHHH
T ss_pred             chhHHHHHHHHHHhCCHHHHHHHHc-----C-Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHH
Confidence            4556678889999999999988885     2 43    459999999999999999999999987        4688999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      .++.++|+|++|++.|+++     +++..+.....+....++.
T Consensus       156 ~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef  193 (449)
T 1b89_A          156 STLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF  193 (449)
T ss_dssp             HHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcH
Confidence            9999999999999999999     3555555554555544433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.72  E-value=0.00034  Score=58.55  Aligned_cols=84  Identities=12%  Similarity=0.064  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQ---NDKVIEDCSKSLEIVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~---y~~Ai~~~~kAL~ldP~-~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      .....++.|.|+.+..+   ..++|..++..+..+|. .-..+|.+|.++.++|+|++|.++.+.+++++|+|.++....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            57888999999998775   45799999999999984 578999999999999999999999999999999999998877


Q ss_pred             HHHHHHHH
Q psy4703         122 SRLFAIVT  129 (401)
Q Consensus       122 ~~l~~~~~  129 (401)
                      ..+...+.
T Consensus       119 ~~Ie~ki~  126 (134)
T 3o48_A          119 SMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.67  E-value=0.00049  Score=58.28  Aligned_cols=82  Identities=12%  Similarity=0.041  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQN---DKVIEDCSKSLEIVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y---~~Ai~~~~kAL~ldP~-~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      .....++.|.|+.+..+.   .+++..++..+..+|. .-..+|.+|..+.++|+|++|.++.+.+|+++|+|.++....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            678889999999987754   5799999999999984 567899999999999999999999999999999999988766


Q ss_pred             HHHHHH
Q psy4703         122 SRLFAI  127 (401)
Q Consensus       122 ~~l~~~  127 (401)
                      ..+...
T Consensus       118 ~~Ie~~  123 (144)
T 1y8m_A          118 SMVEDK  123 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.50  E-value=0.00085  Score=63.68  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=79.8

Q ss_pred             cchHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHH
Q psy4703          44 HERATCLKNRAAVYLK---Q--N------QNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAI-----GKFEEAYTDAK  105 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~k---l--g------~y~~Ai~~~~kAL~ldP~--~~kA~~~~a~a~~~l-----g~~eeA~~~~~  105 (401)
                      +.+..+++-.|.....   .  |      ...+|....++|+++||+  +..+|..+|..|...     |+.+.|..+|+
T Consensus       149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe  228 (301)
T 3u64_A          149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE  228 (301)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence            4467777777776644   2  2      367899999999999999  567999999999996     99999999999


Q ss_pred             HHHhhCCCC-ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703         106 HIHRVEPTN-KAIQPVLSRLFAIV-TKRMQENEQLQNKVHNMFKYVFDTSA  154 (401)
Q Consensus       106 kal~l~P~~-~~~~~~L~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (401)
                      +|++++|+. ..+...+++.+... ++...        ...++++++..++
T Consensus       229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~--------a~~~L~kAL~a~p  271 (301)
T 3u64_A          229 HLTRYCSAHDPDHHITYADALCIPLNNRAG--------FDEALDRALAIDP  271 (301)
T ss_dssp             HHHHHCCTTCSHHHHHHHHHTTTTTTCHHH--------HHHHHHHHHHCCG
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHhcCCHHH--------HHHHHHHHHcCCC
Confidence            999999975 88888888876553 54433        3346777777443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.39  E-value=0.0022  Score=68.14  Aligned_cols=140  Identities=8%  Similarity=-0.072  Sum_probs=78.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----------CCC--------cchHHHHHHHHHHHHHcCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----------EES--------HERATCLKNRAAVYLKQNQNDKV   66 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----------p~~--------~~~~~~~~n~a~~y~klg~y~~A   66 (401)
                      .|.+...+...+......|+++.|...|++++...+          |..        .....+|...+....+.|..+.|
T Consensus       374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A  453 (679)
T 4e6h_A          374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS  453 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence            344444555555555666666666666666665420          110        01233555555555566666666


Q ss_pred             HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703          67 IEDCSKSLEI-VPDDPKALFRRCQAYEAIGK-FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHN  144 (401)
Q Consensus        67 i~~~~kAL~l-dP~~~kA~~~~a~a~~~lg~-~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~  144 (401)
                      ...|.+|++. .+.....|...|..-...++ ++.|...|+++++..|+++..+..+..+....++.        .++..
T Consensus       454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~--------~~AR~  525 (679)
T 4e6h_A          454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE--------SQVKS  525 (679)
T ss_dssp             HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH--------HHHHH
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH--------HHHHH
Confidence            6666666665 33344555555554444443 67777777777777777666665555544443332        34555


Q ss_pred             HHHHhhcC
Q psy4703         145 MFKYVFDT  152 (401)
Q Consensus       145 ~~~~~~~~  152 (401)
                      .|+++...
T Consensus       526 lferal~~  533 (679)
T 4e6h_A          526 LFESSIDK  533 (679)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHHHh
Confidence            77777763

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.39  E-value=0.00091  Score=71.09  Aligned_cols=80  Identities=18%  Similarity=0.085  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4703          27 TALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVI-EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAK  105 (401)
Q Consensus        27 eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai-~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~  105 (401)
                      .....|++|+... |.   .+.+|+..|..+...|+.++|. ..+++|+..+|.+...++..+......|+++.|...|+
T Consensus       327 Rv~~~Ye~aL~~~-p~---~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iye  402 (679)
T 4e6h_A          327 RMTYVYMQAAQHV-CF---APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTIL  402 (679)
T ss_dssp             HHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3445566666666 44   5666666666666666666665 66666666666666666666666666666666666666


Q ss_pred             HHHhh
Q psy4703         106 HIHRV  110 (401)
Q Consensus       106 kal~l  110 (401)
                      +++..
T Consensus       403 k~l~~  407 (679)
T 4e6h_A          403 SCIDR  407 (679)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.38  E-value=0.0011  Score=54.96  Aligned_cols=82  Identities=10%  Similarity=0.012  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYET---ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~e---Ai~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      +.+.+..++.|+.+.+..+..+   +|..++..+..+.|  ...-.+++.+|..|+++|+|.+|..+++..|+++|+|..
T Consensus        32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence            4567788999999999988877   99999988886522  147788999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q psy4703          83 ALFRRCQ   89 (401)
Q Consensus        83 A~~~~a~   89 (401)
                      |.--+..
T Consensus       110 A~~Lk~~  116 (126)
T 1nzn_A          110 AKELERL  116 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8655443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.35  E-value=0.00085  Score=65.90  Aligned_cols=71  Identities=13%  Similarity=0.108  Sum_probs=65.8

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (401)
Q Consensus        45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~  116 (401)
                      ..+.+|.-+|..++..|++++|+..+++|+.++| ++.+|..+|.++.-.|++++|+..|++|+.++|..+.
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            3888999999999999999999999999999997 5788999999999999999999999999999998753

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.35  E-value=0.0028  Score=54.11  Aligned_cols=116  Identities=8%  Similarity=-0.102  Sum_probs=95.8

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhcCCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDY------ETALDFYTKALKVTAEES----HERATCLKNRAAVYLKQNQNDKVIEDCSK   72 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y------~eAi~~y~~Al~l~~p~~----~~~~~~~~n~a~~y~klg~y~~Ai~~~~k   72 (401)
                      -..|++.+.|..-....-+.|+.      +.-++.|++|+..-||+.    .-...+|.+.| .+...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHH
Confidence            35688888888888888888998      899999999999985531    22445556555 44678999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703          73 SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP  119 (401)
Q Consensus        73 AL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~  119 (401)
                      ++.+...+++.|...|+.-...|+...|.+.+.+++.+.|...+..+
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            99999999999999999999999999999999999999998755544

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.20  E-value=0.0062  Score=55.14  Aligned_cols=174  Identities=23%  Similarity=0.275  Sum_probs=115.0

Q ss_pred             ChhHHHHHHHHH-HHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhH-----------HHHHHHH-HHhcHHHHHH
Q psy4703         155 PMDKRVTAVNNL-VVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGE-----------EDFITSI-IKQGVDILKR  221 (401)
Q Consensus       155 ~~~~~~~a~~~L-~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~-----------e~fi~~i-~~~gv~~Lk~  221 (401)
                      +.+.+..+...+ ....+.+.....+...+++..+..+++ +.++++...-           ++....+ ..++++.|-.
T Consensus        25 ~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  103 (252)
T 4db8_A           25 DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ  103 (252)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence            344555566665 233334445566667788999999998 5566664321           1222333 3457999999


Q ss_pred             HHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC-CHHHHHhh
Q psy4703         222 LYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL-DAEVKEAL  300 (401)
Q Consensus       222 l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~-~~~vke~~  300 (401)
                      +++++++.++..|+..|+.+....  +.....+.+   .......-++|..  .+++.+..|+..|..++. +++.++.+
T Consensus       104 lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~---~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~  176 (252)
T 4db8_A          104 LLSSPNEQILQEALWALSNIASGG--NEQIQAVID---AGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAV  176 (252)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHH---TTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHhhcCC--chHHHHHHH---CCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            999999999998888888886421  100000000   0123344455533  377889999999999997 56666665


Q ss_pred             cCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         301 IEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       301 ~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      ++ ...+..|++++++. +..+...++ .++.||+...|
T Consensus       177 ~~-~~~i~~L~~ll~~~-~~~v~~~a~-~~L~~l~~~~~  212 (252)
T 4db8_A          177 ID-AGALPALVQLLSSP-NEQILQEAL-WALSNIASGGN  212 (252)
T ss_dssp             HH-TTCHHHHHHGGGCS-SHHHHHHHH-HHHHHHTTSCH
T ss_pred             HH-CCCHHHHHHHHCCC-CHHHHHHHH-HHHHHHhcCCH
Confidence            53 57899999999887 777888888 99999996665

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.15  E-value=0.0032  Score=56.64  Aligned_cols=173  Identities=21%  Similarity=0.321  Sum_probs=118.4

Q ss_pred             ChhHHHHHHHHHHHhhhcch-hhHHHhhhhHHHHHHHHhhccCchhHHhhH-----------HHHHHHH-HHhcHHHHHH
Q psy4703         155 PMDKRVTAVNNLVVLAREMS-GAEMLLKSGVAKQINTLLKCETNEEIYLGE-----------EDFITSI-IKQGVDILKR  221 (401)
Q Consensus       155 ~~~~~~~a~~~L~~l~~~~~-gae~~~~e~~v~~L~~ll~~~~~~e~~lA~-----------e~fi~~i-~~~gv~~Lk~  221 (401)
                      +.+.+..+...+..+..... ....+...+++..+..+++ +.++++...-           ......+ ..++++.|-.
T Consensus        15 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~   93 (252)
T 4hxt_A           15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK   93 (252)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH
Confidence            36667777777777665544 4566667788999999998 5566653321           1222333 3456999999


Q ss_pred             HHcCCChhHHHHHHHhhhhccccCCCCCCCCC-CCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC-CHHHHHh
Q psy4703         222 LYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL-DAEVKEA  299 (401)
Q Consensus       222 l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~-~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~-~~~vke~  299 (401)
                      +++++++.++..|+..|+.+....  +..... ...|.    ....-+++.  ..+++.+.+|+..|+.++. .++.++.
T Consensus        94 ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~----i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~  165 (252)
T 4hxt_A           94 LLTSTDSEVQKEAARALANIASGP--DEAIKAIVDAGG----VEVLVKLLT--STDSEVQKEAARALANIASGPDEAIKA  165 (252)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTH----HHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCC----HHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999998888888887421  111100 01122    222333443  3457899999999999997 5666666


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         300 LIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       300 ~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      +++ ...+..|++++++. +..+...++ .++.||+...|
T Consensus       166 ~~~-~~~i~~L~~ll~~~-~~~v~~~a~-~~L~~l~~~~~  202 (252)
T 4hxt_A          166 IVD-AGGVEVLVKLLTST-DSEVQKEAA-RALANIASGPT  202 (252)
T ss_dssp             HHH-TTHHHHHHHHTTCS-CHHHHHHHH-HHHHHHTTSBH
T ss_pred             HHH-CcCHHHHHHHHCCC-CHHHHHHHH-HHHHHHHcCCH
Confidence            664 67999999999977 778888888 99999997655

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.06  E-value=0.007  Score=50.54  Aligned_cols=80  Identities=13%  Similarity=0.053  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDY---ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y---~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      +++..++.++.+.+..+.   ..+|..++..++.. |.  ..-..++.+|..++++|+|.+|..+++.+|++.|+|..|.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~--~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cc--hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            467888999999988765   46999999999888 63  3678899999999999999999999999999999998886


Q ss_pred             HHHHHH
Q psy4703          85 FRRCQA   90 (401)
Q Consensus        85 ~~~a~a   90 (401)
                      --+..+
T Consensus       116 ~Lk~~I  121 (134)
T 3o48_A          116 ALKSMV  121 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.99  E-value=0.0082  Score=50.75  Aligned_cols=80  Identities=13%  Similarity=0.055  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYE---TALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~---eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      .-+.+..++.++.+.+..+..   ++|..++..+... |.  ..-..++.+|..|+++|+|.+|..+++..|+++|+|..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            346778899999999988665   5999999999977 63  37788899999999999999999999999999999988


Q ss_pred             HHHHHH
Q psy4703          83 ALFRRC   88 (401)
Q Consensus        83 A~~~~a   88 (401)
                      |.--+.
T Consensus       113 A~~Lk~  118 (144)
T 1y8m_A          113 VGALKS  118 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765443

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=96.93  E-value=0.0041  Score=54.80  Aligned_cols=172  Identities=23%  Similarity=0.273  Sum_probs=117.4

Q ss_pred             CCChhHHHHHHHHHHHhhhc-chhhHHHhhhhHHHHHHHHhhccCchhHHhhH-----------HHHHHHH-HHhcHHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLARE-MSGAEMLLKSGVAKQINTLLKCETNEEIYLGE-----------EDFITSI-IKQGVDIL  219 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~-~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~-----------e~fi~~i-~~~gv~~L  219 (401)
                      ..+.+.+..+...|..+... +.....+...+++..+..+++ +.++++...-           +.....+ ..++++.|
T Consensus        23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L  101 (210)
T 4db6_A           23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL  101 (210)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHH
Confidence            45667777888888777743 444566667788999999998 5566664321           1222333 34679999


Q ss_pred             HHHHcCCChhHHHHHHHhhhhccccCCCCCCCCC-CCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCC-HHHH
Q psy4703         220 KRLYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD-AEVK  297 (401)
Q Consensus       220 k~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~-~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~-~~vk  297 (401)
                      -.+++++++.++..|+..|+.+....  +..... ...|    +....-++|..  .+++.+.+|+..|..++.. ++.+
T Consensus       102 ~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~----~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~  173 (210)
T 4db6_A          102 VQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAG----ALPALVQLLSS--PNEQILQEALWALSNIASGGNEQK  173 (210)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTT----HHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHcCC--HHHHHHHHHcC----cHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCcHHH
Confidence            99999999999999999998887521  111000 0112    22223333432  3778999999999999987 8888


Q ss_pred             HhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhccc
Q psy4703         298 EALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDK  336 (401)
Q Consensus       298 e~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~  336 (401)
                      +.+++. ..+..|++++.+. +..+..-++ .++.||+.
T Consensus       174 ~~~~~~-g~i~~L~~ll~~~-~~~v~~~a~-~aL~~l~~  209 (210)
T 4db6_A          174 QAVKEA-GALEKLEQLQSHE-NEKIQKEAQ-EALEKLQS  209 (210)
T ss_dssp             HHHHHT-THHHHHHHGGGCS-CHHHHHHHH-HHHHHHCC
T ss_pred             HHHHHC-CCHHHHHHHHhCC-CHHHHHHHH-HHHHHHhc
Confidence            777654 6889999999876 667777777 88888864

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.85  E-value=0.014  Score=57.52  Aligned_cols=100  Identities=15%  Similarity=0.129  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------------------CcchHHHHHHHHHHHHHcCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------------SHERATCLKNRAAVYLKQNQNDKVIED   69 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~------------------~~~~~~~~~n~a~~y~klg~y~~Ai~~   69 (401)
                      ..+.+...|......|+.+.|+..+.+|+.+....                  ......+...++.+++..|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34556667777788899999999999999987311                  011223344456666677777777777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703          70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (401)
Q Consensus        70 ~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~ka  107 (401)
                      +..++..+|-+-.+|..+-.+|...|+..+|+..|+++
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77777777777777777777777777777777777664

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=96.85  E-value=0.0062  Score=57.98  Aligned_cols=171  Identities=18%  Similarity=0.140  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHH-HhhccCchhHHhhH----HHH------H-HHH-HHhcHHHHHHHH
Q psy4703         157 DKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINT-LLKCETNEEIYLGE----EDF------I-TSI-IKQGVDILKRLY  223 (401)
Q Consensus       157 ~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~-ll~~~~~~e~~lA~----e~f------i-~~i-~~~gv~~Lk~l~  223 (401)
                      +.+..++..|..+.+...-+..+...|++..+.. +++ +.++++...-    ...      . ..+ ..+|++.|-+++
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            4566677777766665444555556788888888 887 6666664321    111      1 223 446799999999


Q ss_pred             cC-CChhHHHHHHHhhhhccccCCCCCCCCCCCC-CchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC-CHHHHHhh
Q psy4703         224 MS-KNENIRVRALVGLCKLGSMGGSDASIRPFAD-GSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL-DAEVKEAL  300 (401)
Q Consensus       224 ~s-~~d~i~~ralvgLckl~~~gg~d~~~~~~~~-~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~-~~~vke~~  300 (401)
                      ++ .+..++..|+..|+.+...  .+...+.|.+ |-.    ..+-++|-.  .++..+++|+--|+|++- +++.++.+
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~--~~~~~~~~~~~ggi----~~L~~lL~~--~d~~v~~~A~~aLs~L~~~~~~~~~~v  205 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVRE--QEAGLLQFLRLDGF----SVLMRAMQQ--QVQKLKVKSAFLLQNLLVGHPEHKGTL  205 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHH----HHHHHHHHS--SCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCH----HHHHHHHcC--CCHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            85 4778888888888776542  2221212221 222    233333332  478899999999999864 68888888


Q ss_pred             cCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         301 IEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       301 ~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      ++ ..+++.|++++++. +..+.--++ .+|.||....+
T Consensus       206 v~-~g~i~~Lv~LL~~~-d~~v~~~al-~aL~~l~~~~~  241 (296)
T 1xqr_A          206 CS-MGMVQQLVALVRTE-HSPFHEHVL-GALCSLVTDFP  241 (296)
T ss_dssp             HH-TTHHHHHHHHHTSC-CSTHHHHHH-HHHHHHHTTCH
T ss_pred             HH-cCCHHHHHHHHcCC-ChhHHHHHH-HHHHHHHhCCh
Confidence            75 47899999999987 788888888 99999988866

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=96.75  E-value=0.059  Score=48.49  Aligned_cols=171  Identities=23%  Similarity=0.245  Sum_probs=115.3

Q ss_pred             CChhHHHHHHHHHHHhhhc-chhhHHHhhhhHHHHHHHHhhccCchhHHhhH-----------HHHHHHH-HHhcHHHHH
Q psy4703         154 APMDKRVTAVNNLVVLARE-MSGAEMLLKSGVAKQINTLLKCETNEEIYLGE-----------EDFITSI-IKQGVDILK  220 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~~-~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~-----------e~fi~~i-~~~gv~~Lk  220 (401)
                      .+.+.+..+...|..+... +.....+...+++..+..+++ +.++++...-           +.-+..+ ..++++.|-
T Consensus        66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  144 (252)
T 4db8_A           66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV  144 (252)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHH
Confidence            3466777777777777753 444566667788999999998 5566664321           1111223 446799999


Q ss_pred             HHHcCCChhHHHHHHHhhhhccccCCCCCCCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhcc-CCHHHHH
Q psy4703         221 RLYMSKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT-LDAEVKE  298 (401)
Q Consensus       221 ~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~-~~~~vke  298 (401)
                      ++++++++.++..|+..|+.+....  +.....+ ..|-.    ...-++|..  .+++.+..|+..|+.++ -+++.++
T Consensus       145 ~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i----~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~  216 (252)
T 4db8_A          145 QLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGAL----PALVQLLSS--PNEQILQEALWALSNIASGGNEQKQ  216 (252)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTCH----HHHHHGGGC--SSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHcCC--hHHHHHHHHCCCH----HHHHHHHCC--CCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            9999889999998888888887532  1110000 01222    222334433  37789999999999987 5788887


Q ss_pred             hhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhccc
Q psy4703         299 ALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDK  336 (401)
Q Consensus       299 ~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~  336 (401)
                      .+++ ...+..|++++.+. +..+.--++ .++.||+.
T Consensus       217 ~~~~-~g~i~~L~~ll~~~-~~~v~~~A~-~~L~~l~~  251 (252)
T 4db8_A          217 AVKE-AGALEKLEQLQSHE-NEKIQKEAQ-EALEKLQS  251 (252)
T ss_dssp             HHHH-TTHHHHHHTTTTCS-SSHHHHTHH-HHHHTTC-
T ss_pred             HHHH-CCcHHHHHHHhCCC-CHHHHHHHH-HHHHHHhc
Confidence            7764 46889999999887 667777777 89999985

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=96.67  E-value=0.0069  Score=54.42  Aligned_cols=174  Identities=20%  Similarity=0.285  Sum_probs=119.7

Q ss_pred             CChhHHHHHHHHHHHhhhc-chhhHHHhhhhHHHHHHHHhhccCchhHHhhH-----------HHHHHHH-HHhcHHHHH
Q psy4703         154 APMDKRVTAVNNLVVLARE-MSGAEMLLKSGVAKQINTLLKCETNEEIYLGE-----------EDFITSI-IKQGVDILK  220 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~~-~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~-----------e~fi~~i-~~~gv~~Lk  220 (401)
                      .+.+.+..+...|..+... ......+...+++..+..+++ +.++++...-           ......+ ..++++.|-
T Consensus        56 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  134 (252)
T 4hxt_A           56 TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV  134 (252)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence            4466777777888777766 445566667788999999998 6666664331           1222223 345699999


Q ss_pred             HHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCC-CCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC-CHHHHH
Q psy4703         221 RLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFA-DGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL-DAEVKE  298 (401)
Q Consensus       221 ~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~-~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~-~~~vke  298 (401)
                      +++++.++.++..++..|+.+....  +...+.+. .|    .....-.++.  ..+++.|..|+.-|.-++. +++.++
T Consensus       135 ~~l~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~----~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~  206 (252)
T 4hxt_A          135 KLLTSTDSEVQKEAARALANIASGP--DEAIKAIVDAG----GVEVLVKLLT--STDSEVQKEAARALANIASGPTSAIK  206 (252)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTT----HHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSBHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCc----CHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999989999999998888887521  11100000 11    2233334443  3467899999999999987 777777


Q ss_pred             hhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         299 ALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       299 ~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      .+++ ...+..|++++++. +..+..-++ .++.||+...+
T Consensus       207 ~l~~-~~~i~~L~~ll~~~-~~~v~~~a~-~~L~~l~~~~~  244 (252)
T 4hxt_A          207 AIVD-AGGVEVLQKLLTST-DSEVQKEAQ-RALENIKSGGW  244 (252)
T ss_dssp             HHHH-TTHHHHHHHGGGCS-CHHHHHHHH-HHHHHHHHTCB
T ss_pred             HHHH-CCCHHHHHHHHCCC-cHHHHHHHH-HHHHHHHcCCC
Confidence            7764 56889999999877 677888888 89999986544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.23  E-value=0.015  Score=50.37  Aligned_cols=83  Identities=20%  Similarity=0.223  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCC-------------------cchHHHHHHHHHHHHHcCCHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EES-------------------HERATCLKNRAAVYLKQNQNDKV   66 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~-------------------~~~~~~~~n~a~~y~klg~y~~A   66 (401)
                      .++.+...|+.+|..|+|..|...|++||++..  +..                   +....+.+.+|.||.+++++++|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            467888999999999999999999999987653  111                   11236889999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHH
Q psy4703          67 IEDCSKSLEIVPDDPKALFRRCQAY   91 (401)
Q Consensus        67 i~~~~kAL~ldP~~~kA~~~~a~a~   91 (401)
                      +...+.+- ..-..++...-+|+.|
T Consensus       142 i~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             HHHHhcCC-chhcCHHHHHHHHHHh
Confidence            99865431 1224567777777654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=96.19  E-value=0.043  Score=57.31  Aligned_cols=176  Identities=15%  Similarity=0.128  Sum_probs=114.5

Q ss_pred             CCCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhh-H---HHH-------HHHH-HHhcHHHH
Q psy4703         152 TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLG-E---EDF-------ITSI-IKQGVDIL  219 (401)
Q Consensus       152 ~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA-~---e~f-------i~~i-~~~gv~~L  219 (401)
                      ...+.+.+..++..|..+.........+...+++..+..+++ +.++++... .   .+.       ...+ ...+++.|
T Consensus        67 ~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~L  145 (644)
T 2z6h_A           67 NTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM  145 (644)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHH
Confidence            344667777788888777776667777778888999999998 556665332 1   111       1223 35679999


Q ss_pred             HHHHcCCChhHHHHHHHhhhhccccCCCCCCCC-CCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHH
Q psy4703         220 KRLYMSKNENIRVRALVGLCKLGSMGGSDASIR-PFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKE  298 (401)
Q Consensus       220 k~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~-~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke  298 (401)
                      -+++++++..++..++-.|+.+...  .+.... -...|..-.|.+.++.    + .....+..++.-|..++..++.++
T Consensus       146 v~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~~i~~~g~v~~Lv~lL~~----~-~~~~~~~~a~~~L~nLs~~~~~~~  218 (644)
T 2z6h_A          146 VALLNKTNVKFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRT----Y-TYEKLLWTTSRVLKVLSVCSSNKP  218 (644)
T ss_dssp             HHGGGCCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHTT----C-CCHHHHHHHHHHHHHHTTCTTHHH
T ss_pred             HHHHCcCCHHHHHHHHHHHHHHHhc--CcHHHHHHHHcCChHHHHHHHHc----C-ChHHHHHHHHHHHHHHhcCcccHH
Confidence            9999887776555444456666541  111110 1112434445554432    2 234556668889999999999999


Q ss_pred             hhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCC
Q psy4703         299 ALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAF  338 (401)
Q Consensus       299 ~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~  338 (401)
                      .+++. ..+..|++++++. +..+...++ .+|.||+...
T Consensus       219 ~l~~~-g~l~~L~~ll~~~-~~~~~~~a~-~~L~nL~~~~  255 (644)
T 2z6h_A          219 AIVEA-GGMQALGLHLTDP-SQRLVQNCL-WTLRNLSDAA  255 (644)
T ss_dssp             HHHHT-THHHHHHTTTTCS-CHHHHHHHH-HHHHHHGGGC
T ss_pred             HHHHC-CCHHHHHHHHhcC-CHHHHHHHH-HHHHHHhhcc
Confidence            98865 4788888888776 666777777 8888887654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=96.19  E-value=0.087  Score=52.79  Aligned_cols=174  Identities=16%  Similarity=0.192  Sum_probs=107.0

Q ss_pred             CCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhh-H---HHH-------HHHH-HHhcHHHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLG-E---EDF-------ITSI-IKQGVDILK  220 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA-~---e~f-------i~~i-~~~gv~~Lk  220 (401)
                      ..+.+.+..++..|..+...+.....+...+++..+..+++ +.++++... .   .+.       ...+ ..++++.|-
T Consensus        71 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~  149 (529)
T 1jdh_A           71 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV  149 (529)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHH
Confidence            34566777777888777776666677777888999999988 666665332 1   111       1223 356789999


Q ss_pred             HHHcCCChhHHHHHHHhhhhccccCCCCCCCCC-CCCCchHHHHHHHHhhhcCCCCCchhHHh-HHhhhhhccCCHHHHH
Q psy4703         221 RLYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRW-AAEGLAYLTLDAEVKE  298 (401)
Q Consensus       221 ~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~-~~~~s~~~l~~~~~~~l~~~~~~~~~~~~-~~eglay~~~~~~vke  298 (401)
                      +++++++..++..+...|+.+..  +.+..... ...|..-.|.+.++..      +++.++| ++..|..++..++.++
T Consensus       150 ~ll~~~~~~~~~~~~~~L~~la~--~~~~~~~~i~~~~~i~~L~~ll~~~------~~~~~~~~a~~~L~~l~~~~~~~~  221 (529)
T 1jdh_A          150 ALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGGPQALVNIMRTY------TYEKLLWTTSRVLKVLSVCSSNKP  221 (529)
T ss_dssp             HGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTTSTTHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHCCCHHHHHHHHHhC------ChHHHHHHHHHHHHHHhcCcccHH
Confidence            99988777776655556665543  11111111 1123344455544432      2344555 5667888889999998


Q ss_pred             hhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCC
Q psy4703         299 ALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAF  338 (401)
Q Consensus       299 ~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~  338 (401)
                      .+++. ..+..|++++++. +..+...++ .++.||+...
T Consensus       222 ~~~~~-g~~~~L~~ll~~~-~~~~~~~a~-~~L~~l~~~~  258 (529)
T 1jdh_A          222 AIVEA-GGMQALGLHLTDP-SQRLVQNCL-WTLRNLSDAA  258 (529)
T ss_dssp             HHHHT-THHHHHHTTTTSS-CHHHHHHHH-HHHHHHHTTC
T ss_pred             HHHHC-CCHHHHHHHHhCC-ChHHHHHHH-HHHHHHhcCC
Confidence            88754 4777777777665 445555556 6666666543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.89  E-value=0.12  Score=52.47  Aligned_cols=116  Identities=8%  Similarity=-0.095  Sum_probs=71.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcc------------------------------------hHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE------------------------------------RAT   48 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~------------------------------------~~~   48 (401)
                      .|.....|...+..+...|+.+.|...|.+|+.. |.....                                    ...
T Consensus       209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  287 (493)
T 2uy1_A          209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL  287 (493)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence            4666777888888888889999999999999888 322100                                    012


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg-~~eeA~~~~~kal~l~P~~~~~~~~L~  122 (401)
                      +|...+....+.++.+.|...|.+| ...+.....|...|..-...+ +++.|...|+.+++..|+++..+..+.
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yi  361 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFF  361 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            2333333334456677777777777 333334455555555555555 477777777777777776665544333

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=95.66  E-value=0.3  Score=42.65  Aligned_cols=144  Identities=16%  Similarity=0.105  Sum_probs=90.1

Q ss_pred             CChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHH-HHhcHHHHHHHHcCCChhHHH
Q psy4703         154 APMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSI-IKQGVDILKRLYMSKNENIRV  232 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i-~~~gv~~Lk~l~~s~~d~i~~  232 (401)
                      .+...+..+...|...+.          ...+..+..+++ +.++.+..+--..+..+ ....++.|..+++..++.++.
T Consensus        62 ~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~  130 (211)
T 3ltm_A           62 EDAWVRRAAADALGQIGD----------ERAVEPLIKALK-DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRI  130 (211)
T ss_dssp             SCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHH
Confidence            355566666666655443          233555666666 55666643332222222 234578888888888888999


Q ss_pred             HHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHH
Q psy4703         233 RALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVD  312 (401)
Q Consensus       233 ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~  312 (401)
                      .|+..|..++..            .    ......+++.  ..++..|..|++.|..+           .++..+..|.+
T Consensus       131 ~a~~aL~~~~~~------------~----~~~~L~~~l~--d~~~~vr~~a~~aL~~~-----------~~~~~~~~L~~  181 (211)
T 3ltm_A          131 AAAFALGEIGDE------------R----AVEPLIKALK--DEDGWVRQSAADALGEI-----------GGERVRAAMEK  181 (211)
T ss_dssp             HHHHHHHHHCCG------------G----GHHHHHHHTT--CSSHHHHHHHHHHHHHH-----------CSHHHHHHHHH
T ss_pred             HHHHHHHHcCCH------------H----HHHHHHHHHc--CCCHHHHHHHHHHHHHh-----------CchhHHHHHHH
Confidence            888888888631            1    2233444552  34678899999999987           35777888888


Q ss_pred             HHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         313 VASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      ++++. +..+-...+ ..+.++++..+
T Consensus       182 ~l~d~-~~~vr~~A~-~aL~~~~~~~~  206 (211)
T 3ltm_A          182 LAETG-TGFARKVAV-NYLETHKSFNH  206 (211)
T ss_dssp             HHHHC-CHHHHHHHH-HHHHC------
T ss_pred             HHhCC-CHHHHHHHH-HHHHhcCCCCC
Confidence            88876 667888888 88888876543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=95.54  E-value=0.23  Score=48.37  Aligned_cols=174  Identities=14%  Similarity=0.083  Sum_probs=110.9

Q ss_pred             ChhHHHHHHHHHHHhhhcc-hhhHHHhhhhHHHHHHHHhhccCchhHHhh-H---HH-------HHHHH-HHhcHHHHHH
Q psy4703         155 PMDKRVTAVNNLVVLAREM-SGAEMLLKSGVAKQINTLLKCETNEEIYLG-E---ED-------FITSI-IKQGVDILKR  221 (401)
Q Consensus       155 ~~~~~~~a~~~L~~l~~~~-~gae~~~~e~~v~~L~~ll~~~~~~e~~lA-~---e~-------fi~~i-~~~gv~~Lk~  221 (401)
                      +...+..++..+....... .....+...+++..+..+++ +.++++... .   ..       +-..+ ..++++.|-.
T Consensus        78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  156 (450)
T 2jdq_A           78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQ  156 (450)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence            5566677777776665532 22334445677888888888 556666432 1   11       11222 3467999999


Q ss_pred             HHcC-CChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCC-HHHHHh
Q psy4703         222 LYMS-KNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD-AEVKEA  299 (401)
Q Consensus       222 l~~s-~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~-~~vke~  299 (401)
                      ++++ .++.++..++..|+.+....+... ...+..|..    ...-+++.  ..+++.+..|+..|.+++-. ++.++.
T Consensus       157 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l----~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~  229 (450)
T 2jdq_A          157 LFSKQNRLTMTRNAVWALSNLCRGKSPPP-EFAKVSPCL----NVLSWLLF--VSDTDVLADACWALSYLSDGPNDKIQA  229 (450)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHHHCCSSSCC-CGGGTGGGH----HHHHHHTT--CCCHHHHHHHHHHHHHHTSSSHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHH----HHHHHHHc--cCCHHHHHHHHHHHHHHHCCCcHHHHH
Confidence            9984 678888888888877775321111 112223333    33333343  34678899999999999874 555555


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         300 LIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       300 ~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      ++. ...+..|++++++. +..+...++ .++.|++...+
T Consensus       230 ~~~-~~~i~~L~~ll~~~-~~~v~~~a~-~~L~~l~~~~~  266 (450)
T 2jdq_A          230 VID-AGVCRRLVELLMHN-DYKVVSPAL-RAVGNIVTGDD  266 (450)
T ss_dssp             HHH-TTTHHHHHHHTTCS-CHHHHHHHH-HHHHHHTTSCH
T ss_pred             HHH-cCcHHHHHHHHCCC-chhHHHHHH-HHHHHHhhCCh
Confidence            543 45788899998866 667888888 88999987655

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.33  E-value=0.022  Score=49.90  Aligned_cols=117  Identities=26%  Similarity=0.249  Sum_probs=83.3

Q ss_pred             HHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCC-CCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhc
Q psy4703         212 IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL  290 (401)
Q Consensus       212 ~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~-~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~  290 (401)
                      ..++++.|-.++++.++.++..|+..|+.+...  .+..... ...|..    ...-++|..  .+++.+..|+..|..+
T Consensus        52 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i----~~L~~lL~~--~~~~v~~~a~~~L~~l  123 (210)
T 4db6_A           52 DAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGAL----PALVQLLSS--PNEQILQEALWALSNI  123 (210)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTCH----HHHHHHTTC--SCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CcHHHHHHHHCCCH----HHHHHHHcC--CcHHHHHHHHHHHHHH
Confidence            346799999999988999999888888888642  1111000 011222    223334432  3678999999999999


Q ss_pred             cC-CHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         291 TL-DAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       291 ~~-~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      +. +++.++.++ +...+..|++++++. +..+..-++ .+|.||+..-+
T Consensus       124 ~~~~~~~~~~~~-~~~~i~~L~~ll~~~-~~~v~~~a~-~aL~~l~~~~~  170 (210)
T 4db6_A          124 ASGGNEQIQAVI-DAGALPALVQLLSSP-NEQILQEAL-WALSNIASGGN  170 (210)
T ss_dssp             TTSCHHHHHHHH-HTTHHHHHHHHTTCS-CHHHHHHHH-HHHHHHHTSCH
T ss_pred             HcCCHHHHHHHH-HcCcHHHHHHHHcCC-CHHHHHHHH-HHHHHHHcCCc
Confidence            95 666666665 567899999999987 777888888 99999997656

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.06  E-value=0.3  Score=42.60  Aligned_cols=96  Identities=17%  Similarity=0.109  Sum_probs=73.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh---------------
Q psy4703          14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL--EI---------------   76 (401)
Q Consensus        14 ~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL--~l---------------   76 (401)
                      -.+-.++-.|.|..++-+..   .++      .....+..+.||.++++|.+|+...+..|  +.               
T Consensus        38 L~~I~LyyngEY~R~Lf~L~---~lN------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLH---KLN------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH---TCC------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             hhhhhhhhcchHhHHHHHHH---hcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            34666777888887765543   344      56666778999999999999999999999  22               


Q ss_pred             CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Q psy4703          77 VPDDPKA-LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ  118 (401)
Q Consensus        77 dP~~~kA-~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~  118 (401)
                      ||.+-+. +.-+|..+..+|.-+||+.+|.+....+|--+.+.
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence            3555554 45579999999999999999999999988654443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.86  E-value=0.22  Score=49.62  Aligned_cols=101  Identities=15%  Similarity=-0.004  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH----HHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PDDP----KAL   84 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--P~~~----kA~   84 (401)
                      .+..+|..+++.|++++|++.|.++...+ ........++.....+++..++|..+...+.++-.+-  ..++    +..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            45689999999999999999999999887 5545678899999999999999999999999986552  2222    334


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEP  112 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P  112 (401)
                      ...|.++...++|.+|...|-.++.-..
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            5567788899999999999988876543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=94.80  E-value=0.49  Score=40.94  Aligned_cols=141  Identities=21%  Similarity=0.188  Sum_probs=90.8

Q ss_pred             CCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHH-HHhcHHHHHHHHcCCChhHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSI-IKQGVDILKRLYMSKNENIR  231 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i-~~~gv~~Lk~l~~s~~d~i~  231 (401)
                      +++...+..++..|...+..          ..+..+..++. +.++.+...--..+..+ ....++.|..++++.++.++
T Consensus        25 ~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr   93 (201)
T 3ltj_A           25 DDSYYVRRAAAYALGKIGDE----------RAVEPLIKALK-DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVR   93 (201)
T ss_dssp             CSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHc-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHH
Confidence            45566777777777665542          34566666666 55665533222222222 23568888888888888899


Q ss_pred             HHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHH
Q psy4703         232 VRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALV  311 (401)
Q Consensus       232 ~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~  311 (401)
                      ..|+..|+.++..            ..    .....++|.  ..++..|.+|++.|+.+.           ++..+..|+
T Consensus        94 ~~a~~aL~~~~~~------------~~----~~~L~~~l~--d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~  144 (201)
T 3ltj_A           94 QSAAVALGQIGDE------------RA----VEPLIKALK--DEDWFVRIAAAFALGEIG-----------DERAVEPLI  144 (201)
T ss_dssp             HHHHHHHHHHCCG------------GG----HHHHHHHTT--CSSHHHHHHHHHHHHHHT-----------CGGGHHHHH
T ss_pred             HHHHHHHHHhCcH------------HH----HHHHHHHHc--CCCHHHHHHHHHHHHHhC-----------CHHHHHHHH
Confidence            9888888887631            11    222333442  346788999999998873           456777888


Q ss_pred             HHHhcCCCCcchhhhhhhHHhhcc
Q psy4703         312 DVASSVKYKNVWNGTQSDALKDVD  335 (401)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~n~~  335 (401)
                      +++++. +..+-..++ ..+.++.
T Consensus       145 ~~l~d~-~~~vr~~A~-~aL~~~~  166 (201)
T 3ltj_A          145 KALKDE-DGWVRQSAA-DALGEIG  166 (201)
T ss_dssp             HHTTCS-SHHHHHHHH-HHHHHHC
T ss_pred             HHHcCC-CHHHHHHHH-HHHHHhC
Confidence            888765 666777777 7777763

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.75  E-value=1.5  Score=44.34  Aligned_cols=148  Identities=11%  Similarity=-0.017  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhC-CCC
Q psy4703          12 LKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQN---------QNDKVIEDCSKSLEIV-PDD   80 (401)
Q Consensus        12 l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-p~~~~~~~~~~n~a~~y~klg---------~y~~Ai~~~~kAL~ld-P~~   80 (401)
                      +...=+.+.+.|++++|+..|++..+..- |    +...|..+-.++.+.+         ..++|...|++..+.. +-+
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p----d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd  104 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQL----SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN  104 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC----CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence            44555777899999999999999887641 4    3445555544554433         3788999998877653 236


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCh
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRV--EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD--TSAPM  156 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l--~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~  156 (401)
                      ...|..+-.+|.+.|++++|...|++..+.  .|+ ......+-..+-..++..+        +..+|+.+..  ..++.
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~--------A~~l~~~M~~~G~~Pd~  175 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADK--------AYEVDAHMVESEVVPEE  175 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHH--------HHHHHHHHHhcCCCCCH
Confidence            788999999999999999999999988764  454 3344444444444444433        3345666555  44555


Q ss_pred             hHHHHHHHHHHHhhhc
Q psy4703         157 DKRVTAVNNLVVLARE  172 (401)
Q Consensus       157 ~~~~~a~~~L~~l~~~  172 (401)
                      ......+..+...++.
T Consensus       176 ~ty~~Li~~~~~~g~~  191 (501)
T 4g26_A          176 PELAALLKVSMDTKNA  191 (501)
T ss_dssp             HHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhhCCCH
Confidence            5555555556665654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.71  E-value=0.55  Score=47.46  Aligned_cols=113  Identities=13%  Similarity=-0.038  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      ...|...+....+.++.+.|...|.+|  .. |.  ....+|...|..-+..+ +++.|...|+.+++..|+.+..+...
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A--~~-~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y  360 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL--GN-EG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF  360 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH--TT-SC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh--hC-CC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            345666666666788899999999999  34 43  24557766676666666 69999999999999999999988888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~  130 (401)
                      +.....+|+.+.|...|+++    +....++..........+.
T Consensus       361 id~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~  399 (493)
T 2uy1_A          361 FLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS  399 (493)
T ss_dssp             HHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence            88889999999999999997    3344555555444444443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=94.69  E-value=0.27  Score=49.54  Aligned_cols=180  Identities=12%  Similarity=0.049  Sum_probs=113.0

Q ss_pred             hhcCCCChhHHHHHHHHHHHhhhcc-hhhHHHhhhhHHHHHHHHhhccCchhHHhhH----H-------HHHHHH-HHhc
Q psy4703         149 VFDTSAPMDKRVTAVNNLVVLAREM-SGAEMLLKSGVAKQINTLLKCETNEEIYLGE----E-------DFITSI-IKQG  215 (401)
Q Consensus       149 ~~~~~~~~~~~~~a~~~L~~l~~~~-~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~----e-------~fi~~i-~~~g  215 (401)
                      ++..+.+...+..++..|..+.... .....+...+++..+..++. +.++++...-    .       .+-..+ ..++
T Consensus       125 lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~  203 (528)
T 4b8j_A          125 FLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLANGA  203 (528)
T ss_dssp             HHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCc
Confidence            3333333666777777777666643 33344555678999999988 5566664321    1       111223 3356


Q ss_pred             HHHHHHHH-cCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCH
Q psy4703         216 VDILKRLY-MSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDA  294 (401)
Q Consensus       216 v~~Lk~l~-~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~  294 (401)
                      ++.|-.++ .+.+..++..++..|+.+..... .. ......|    +....-++|.  ..+++.+..|+..|++++-.+
T Consensus       204 l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~-~~-~~~~~~~----~l~~L~~lL~--~~~~~v~~~a~~aL~~l~~~~  275 (528)
T 4b8j_A          204 LLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP-QP-SFEQTRP----ALPALARLIH--SNDEEVLTDACWALSYLSDGT  275 (528)
T ss_dssp             HHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS-CC-CHHHHTT----HHHHHHHHTT--CCCHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC-CC-cHHHHHH----HHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCC
Confidence            88888888 46777887777777777765321 11 1111112    2333333442  346789999999999999766


Q ss_pred             HHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         295 EVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       295 ~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      +-.-+.+-+...+..|+.++++. +..+.-.++ .++.||+...+
T Consensus       276 ~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~-~~L~nl~~~~~  318 (528)
T 4b8j_A          276 NDKIQAVIEAGVCPRLVELLLHP-SPSVLIPAL-RTVGNIVTGDD  318 (528)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHH-HHHHHHTTSCH
T ss_pred             HHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHH-HHHHHHHcCCH
Confidence            55433334557889999999887 667888888 89999986555

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=94.65  E-value=0.058  Score=52.81  Aligned_cols=175  Identities=14%  Similarity=0.102  Sum_probs=108.7

Q ss_pred             CChhHHHHHHHHHHHhhh--cchhhHHHhhh-hHHHHHHHHhhccC-chhHHhhHHHHH-----------HHH-HHhcHH
Q psy4703         154 APMDKRVTAVNNLVVLAR--EMSGAEMLLKS-GVAKQINTLLKCET-NEEIYLGEEDFI-----------TSI-IKQGVD  217 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~--~~~gae~~~~e-~~v~~L~~ll~~~~-~~e~~lA~e~fi-----------~~i-~~~gv~  217 (401)
                      .+...+..++..+..+..  .+.....+... +.+..+.++++ +. ++++...--..+           ..+ ..++++
T Consensus        32 ~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  110 (450)
T 2jdq_A           32 KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK-RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVP  110 (450)
T ss_dssp             SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHT-CTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHC-CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHH
Confidence            345556666666644321  12223444455 67888888887 44 566544321111           222 346799


Q ss_pred             HHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCC--HH
Q psy4703         218 ILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD--AE  295 (401)
Q Consensus       218 ~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~--~~  295 (401)
                      .|-++++++++.++..|+..|+.+..... +....-...|..    ...-+++. ...+.+.|+.|+..|..++-.  |.
T Consensus       111 ~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~~i----~~L~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~  184 (450)
T 2jdq_A          111 IFIELLSSEFEDVQEQAVWALGNIAGDST-MCRDYVLDCNIL----PPLLQLFS-KQNRLTMTRNAVWALSNLCRGKSPP  184 (450)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCH----HHHHHHTT-SCCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHccCCH-HHHHHHHHCCCH----HHHHHHhc-CCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999988875321 000000011222    22223332 335678999999999998854  45


Q ss_pred             HHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         296 VKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       296 vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      .+..++  ..++..|++++++. +..+...++ .++.||+...+
T Consensus       185 ~~~~~~--~~~l~~L~~~l~~~-~~~v~~~a~-~~L~~l~~~~~  224 (450)
T 2jdq_A          185 PEFAKV--SPCLNVLSWLLFVS-DTDVLADAC-WALSYLSDGPN  224 (450)
T ss_dssp             CCGGGT--GGGHHHHHHHTTCC-CHHHHHHHH-HHHHHHTSSSH
T ss_pred             CCHHHH--HHHHHHHHHHHccC-CHHHHHHHH-HHHHHHHCCCc
Confidence            555554  66888999999876 777777788 88999987654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=94.59  E-value=0.32  Score=48.55  Aligned_cols=175  Identities=14%  Similarity=0.087  Sum_probs=110.0

Q ss_pred             ChhHHHHHHHHHHHhhhcchhh-HHHhhhhHHHHHHHHhhccCchhHHhhH-----------HHHHHHH-HHhcHHHHHH
Q psy4703         155 PMDKRVTAVNNLVVLAREMSGA-EMLLKSGVAKQINTLLKCETNEEIYLGE-----------EDFITSI-IKQGVDILKR  221 (401)
Q Consensus       155 ~~~~~~~a~~~L~~l~~~~~ga-e~~~~e~~v~~L~~ll~~~~~~e~~lA~-----------e~fi~~i-~~~gv~~Lk~  221 (401)
                      +.+.+..++..+..+...+... ..+...|++..+..+++ +.++++...-           ++.-..+ ..+|++.|-+
T Consensus        15 ~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~   93 (457)
T 1xm9_A           15 DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVS   93 (457)
T ss_dssp             CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence            3455666666666655444433 35667788999999988 6666653321           1111334 4577999999


Q ss_pred             HHc-CCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHh----hhcCC------CCCchhHHhHHhhhhhc
Q psy4703         222 LYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRR----FLVNP------ARDPDIRRWAAEGLAYL  290 (401)
Q Consensus       222 l~~-s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~----~l~~~------~~~~~~~~~~~eglay~  290 (401)
                      +++ +++++++..|...|.-+...   +.......+|..-.|.+....    +-..+      ..+.+..+.|+--|.++
T Consensus        94 lL~~~~~~~~~~~a~~aL~nLa~~---~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nL  170 (457)
T 1xm9_A           94 LLRRTGNAEIQKQLTGLLWNLSST---DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL  170 (457)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHTS---SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHHhcC---HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHH
Confidence            998 88889988777777776642   222211222333334433311    00111      13567778999999999


Q ss_pred             cCCHHHHHhhcCCHHHHHHHHHHHhcC-----C-CCcchhhhhhhHHhhcc
Q psy4703         291 TLDAEVKEALIEDKPALAALVDVASSV-----K-YKNVWNGTQSDALKDVD  335 (401)
Q Consensus       291 ~~~~~vke~~~~d~~~l~~l~~~~~~~-----~-~~~~~~~~~~~~~~n~~  335 (401)
                      +-+++.+..+++-+..+..|+.++++.     + ++.+..+ + .++.||+
T Consensus       171 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a-~-~~L~nLs  219 (457)
T 1xm9_A          171 SSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENC-M-CVLHNLS  219 (457)
T ss_dssp             TTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHH-H-HHHHHHT
T ss_pred             ccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHH-H-HHHHhcc
Confidence            999999999887667899999998752     1 3444444 4 5688987

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=94.58  E-value=0.038  Score=59.40  Aligned_cols=118  Identities=17%  Similarity=0.180  Sum_probs=87.9

Q ss_pred             HHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCC--CCchHHHHHHHHhhhcCCCCCchhHHhHHhhhh
Q psy4703         211 IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFA--DGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA  288 (401)
Q Consensus       211 i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~--~~s~~~l~~~~~~~l~~~~~~~~~~~~~~egla  288 (401)
                      +...+++.|..++.+++..++..|+..|+.+.....   ......  +|....|.    ++|.+ +.+++.|+.|+..|.
T Consensus       147 i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~---~~~~i~~~~~~i~~Lv----~~L~~-~~d~~vr~~Aa~aL~  218 (780)
T 2z6g_A          147 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA---SRHAIMRSPQMVSAIV----RTMQN-TNDVETARCTSGTLH  218 (780)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH---HHHHHTTCHHHHHHHH----HHHHH-CCCHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh---hHHHHHhccChHHHHH----HHHcC-CCCHHHHHHHHHHHH
Confidence            346679999999998899999999998888875321   111111  12122222    23322 247889999999999


Q ss_pred             hccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         289 YLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       289 y~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      .++..++.++.+++. ..+..|++++++. +..+.+.++ .+|.||+...+
T Consensus       219 ~Ls~~~~~~~~i~~~-g~I~~Lv~lL~~~-~~~v~~~A~-~aL~nLa~~~~  266 (780)
T 2z6g_A          219 NLSHHREGLLAIFKS-GGIPALVNMLGSP-VDSVLFHAI-TTLHNLLLHQE  266 (780)
T ss_dssp             HHHTSHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHH-HHHHHHHHHST
T ss_pred             HHhCCchhHHHHHHc-CCHHHHHHHHcCC-CHHHHHHHH-HHHHHHhCCCh
Confidence            999999999888875 8899999999988 778999999 99999987654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=94.33  E-value=0.084  Score=54.88  Aligned_cols=154  Identities=18%  Similarity=0.216  Sum_probs=100.6

Q ss_pred             HHHhhhhHHHHHHHHhhccCchhHHhhHHHHH-----------HHH-HHhcHHHHHHHHcCCChhHHHHHHHhhhhcccc
Q psy4703         177 EMLLKSGVAKQINTLLKCETNEEIYLGEEDFI-----------TSI-IKQGVDILKRLYMSKNENIRVRALVGLCKLGSM  244 (401)
Q Consensus       177 e~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi-----------~~i-~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~  244 (401)
                      +.-|++.++..+..+++ +.++++...-..++           ..+ ...|++.|-++++++++.++..|...|..|...
T Consensus        42 ~~~~~~~~i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~  120 (584)
T 3l6x_A           42 PPNWRQPELPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG  120 (584)
T ss_dssp             CCCCCCCCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred             CCCcccccHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence            33445566666666666 44555433211111           334 346699999999999999999888888888642


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHh---c-----
Q psy4703         245 GGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVAS---S-----  316 (401)
Q Consensus       245 gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~---~-----  316 (401)
                      .+.+.-......|..-.|++.+++     ..+.+.++.|+--|..+|..++.|..+++  ..|..|++++.   +     
T Consensus       121 ~~~~nk~~I~~~GaIp~LV~LL~s-----~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~  193 (584)
T 3l6x_A          121 RDQDNKIAIKNCDGVPALVRLLRK-----ARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWERE  193 (584)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHHH-----CCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC--
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHcC-----CCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhccccccccc
Confidence            111111111123545556665543     23567789999999999999999999993  57999999762   1     


Q ss_pred             ---------CCCCcchhhhhhhHHhhcccCCc
Q psy4703         317 ---------VKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       317 ---------~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                               ..+..+.+-+. .+|.||+-.-+
T Consensus       194 ~~~~~k~~~~~d~~V~~nAa-~~L~NLs~~~~  224 (584)
T 3l6x_A          194 PNEDCKPRHIEWESVLTNTA-GCLRNVSSERS  224 (584)
T ss_dssp             --------CCCCHHHHHHHH-HHHHHHTSSCH
T ss_pred             ccccccccccccHHHHHHHH-HHHHHHhcCCH
Confidence                     11345777777 89999986654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=94.27  E-value=0.87  Score=39.27  Aligned_cols=141  Identities=17%  Similarity=0.140  Sum_probs=93.1

Q ss_pred             CCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHH-HHhcHHHHHHHHcCCChhHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSI-IKQGVDILKRLYMSKNENIR  231 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i-~~~gv~~Lk~l~~s~~d~i~  231 (401)
                      ..+...+..+...|...+..          ..+..+..++. +.++.+..+--..+..+ ....++.|..++++.++.++
T Consensus        56 ~~~~~vr~~a~~~L~~~~~~----------~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr  124 (201)
T 3ltj_A           56 DEDAWVRRAAADALGQIGDE----------RAVEPLIKALK-DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVR  124 (201)
T ss_dssp             CSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCCH----------HHHHHHHHHHc-CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHH
Confidence            34556666676666655542          34556666666 55666644332222222 23468888889988889999


Q ss_pred             HHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHH
Q psy4703         232 VRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALV  311 (401)
Q Consensus       232 ~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~  311 (401)
                      ..|+..|..++..            +.    ......++..  .++..|..|++.|..+           .++..+..|.
T Consensus       125 ~~a~~aL~~~~~~------------~~----~~~L~~~l~d--~~~~vr~~A~~aL~~~-----------~~~~~~~~L~  175 (201)
T 3ltj_A          125 IAAAFALGEIGDE------------RA----VEPLIKALKD--EDGWVRQSAADALGEI-----------GGERVRAAME  175 (201)
T ss_dssp             HHHHHHHHHHTCG------------GG----HHHHHHHTTC--SSHHHHHHHHHHHHHH-----------CSHHHHHHHH
T ss_pred             HHHHHHHHHhCCH------------HH----HHHHHHHHcC--CCHHHHHHHHHHHHHh-----------CchhHHHHHH
Confidence            9999999888631            12    2333444533  3678999999999987           4778888888


Q ss_pred             HHHhcCCCCcchhhhhhhHHhhcc
Q psy4703         312 DVASSVKYKNVWNGTQSDALKDVD  335 (401)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~n~~  335 (401)
                      +++.+. +..+-..+. ..+.++.
T Consensus       176 ~~l~d~-~~~vr~~A~-~aL~~l~  197 (201)
T 3ltj_A          176 KLAETG-TGFARKVAV-NYLETHK  197 (201)
T ss_dssp             HHHHHC-CHHHHHHHH-HHHHHCC
T ss_pred             HHHhCC-CHHHHHHHH-HHHHHHH
Confidence            888776 666777666 6666654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.26  E-value=0.71  Score=46.85  Aligned_cols=91  Identities=13%  Similarity=0.112  Sum_probs=40.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKALFRRCQA   90 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-P~~~kA~~~~a~a   90 (401)
                      ...-..+.+.|++++|...|.+..+..- |    +...|..+-.+|.+.|+.++|...+++..+.. .-+...|..+-.+
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~P----d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~  184 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQP----RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV  184 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            3334444444555555555544443320 2    23344444444444555555555544444332 1133344444444


Q ss_pred             HHHcCCHHHHHHHHHHH
Q psy4703          91 YEAIGKFEEAYTDAKHI  107 (401)
Q Consensus        91 ~~~lg~~eeA~~~~~ka  107 (401)
                      |.+.|++++|.+.+++.
T Consensus       185 ~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          185 SMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HhhCCCHHHHHHHHHHH
Confidence            55555555555444443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.17  E-value=0.12  Score=55.16  Aligned_cols=59  Identities=12%  Similarity=0.162  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~ka  107 (401)
                      ++.--+.-++..|+|+-|+....+|+.+-|.....|++++.+|..+|+|+.|+-.+.-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44445666778899999999999999999999999999999999999999999776654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=94.09  E-value=0.64  Score=40.52  Aligned_cols=141  Identities=21%  Similarity=0.190  Sum_probs=94.5

Q ss_pred             CCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHH-HHhcHHHHHHHHcCCChhHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSI-IKQGVDILKRLYMSKNENIR  231 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i-~~~gv~~Lk~l~~s~~d~i~  231 (401)
                      .++...+..++..|...+..          ..+..+..++. +.++.+...--..+..+ ....++.|..++++.++.++
T Consensus        30 ~~~~~vR~~A~~~L~~~~~~----------~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr   98 (211)
T 3ltm_A           30 DDSYYVRRAAAYALGKIGDE----------RAVEPLIKALK-DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVR   98 (211)
T ss_dssp             CSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTT-CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHc-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHH
Confidence            45566677777777665542          34666677776 55666633322222222 23568889999998999999


Q ss_pred             HHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHH
Q psy4703         232 VRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALV  311 (401)
Q Consensus       232 ~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~  311 (401)
                      ..|+..|++++..            +.    .....++|  ...++..|..|++.|+.+.           ++..+..|+
T Consensus        99 ~~a~~aL~~~~~~------------~~----~~~L~~~l--~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~  149 (211)
T 3ltm_A           99 QSAAVALGQIGDE------------RA----VEPLIKAL--KDEDWFVRIAAAFALGEIG-----------DERAVEPLI  149 (211)
T ss_dssp             HHHHHHHHHHCCG------------GG----HHHHHHHT--TCSSHHHHHHHHHHHHHHC-----------CGGGHHHHH
T ss_pred             HHHHHHHHHhCcH------------HH----HHHHHHHH--hCCCHHHHHHHHHHHHHcC-----------CHHHHHHHH
Confidence            9999999988631            11    23333444  2456789999999999873           456778888


Q ss_pred             HHHhcCCCCcchhhhhhhHHhhcc
Q psy4703         312 DVASSVKYKNVWNGTQSDALKDVD  335 (401)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~n~~  335 (401)
                      +++++. +..+-..++ ..+.++.
T Consensus       150 ~~l~d~-~~~vr~~a~-~aL~~~~  171 (211)
T 3ltm_A          150 KALKDE-DGWVRQSAA-DALGEIG  171 (211)
T ss_dssp             HHTTCS-SHHHHHHHH-HHHHHHC
T ss_pred             HHHcCC-CHHHHHHHH-HHHHHhC
Confidence            888765 667888888 7777775

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.02  E-value=0.44  Score=47.00  Aligned_cols=97  Identities=10%  Similarity=0.002  Sum_probs=77.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH----HHH
Q psy4703          14 ESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV---PDDP----KAL   84 (401)
Q Consensus        14 ~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld---P~~~----kA~   84 (401)
                      ..|..|+..|+|.+|+..+.+..+-..  .++.....++......|..++++.++...+++|....   +.++    ...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            679999999999999999999887652  1235677888899999999999999999999987653   1233    234


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHhh
Q psy4703          85 FRRCQAYE-AIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        85 ~~~a~a~~-~lg~~eeA~~~~~kal~l  110 (401)
                      ..-|..++ ..++|..|..+|-.+++-
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            45588888 899999999999888743

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.00  E-value=0.15  Score=54.45  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA   73 (401)
                      .+..+..++..+..+|+|+-|+.+-++|+... |.   ....|+.++.||..+|+|+.|+-..+.+
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-Ps---eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LD---SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SS---CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-ch---hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45567788999999999999999999999999 76   8999999999999999999999765543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.84  E-value=0.29  Score=49.79  Aligned_cols=79  Identities=13%  Similarity=0.075  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      .+..+|....-...+..|..+|.+|+.+.|++...|..+|.+....|+.-+|+.+|-+++......+.+..+|..+...
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            4455677777777889999999999999999999999999999999999999999999998877788888888766554

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=93.83  E-value=0.59  Score=46.61  Aligned_cols=175  Identities=14%  Similarity=0.136  Sum_probs=110.4

Q ss_pred             CCChhHHHHHHHHHHHhhhcchhhHHHhhh-hHHHHHHHHhhccCchhHHhhH----------HHHHHHH-HHhcHHHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKS-GVAKQINTLLKCETNEEIYLGE----------EDFITSI-IKQGVDILK  220 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e-~~v~~L~~ll~~~~~~e~~lA~----------e~fi~~i-~~~gv~~Lk  220 (401)
                      ..+...+..+...|..+...+.....++.. +++..+..++..+.++++...-          .+....+ ..++++.|-
T Consensus        28 ~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~  107 (529)
T 1jdh_A           28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV  107 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHH
Confidence            345666777777777776655444455443 6688888887623355553321          1112223 446799999


Q ss_pred             HHHcCCChhHHHHHHHhhhhccccCCCCCCCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC-CHHHHH
Q psy4703         221 RLYMSKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL-DAEVKE  298 (401)
Q Consensus       221 ~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~-~~~vke  298 (401)
                      ++++++++.++..|+..|..+.....  .....+ ..|-    ....-++|..  .+.+.+..++..|.-++. +++.+.
T Consensus       108 ~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~g~----i~~L~~ll~~--~~~~~~~~~~~~L~~la~~~~~~~~  179 (529)
T 1jdh_A          108 KMLGSPVDSVLFYAITTLHNLLLHQE--GAKMAVRLAGG----LQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHCT--THHHHHHHHTH----HHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCc--chHHHHHHcCC----HHHHHHHHhc--CCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999889998888888877765321  111000 0122    2233344433  356778888888888876 589998


Q ss_pred             hhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccC
Q psy4703         299 ALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKA  337 (401)
Q Consensus       299 ~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~  337 (401)
                      .+++. ..+..|++++++.....+.+.++ .++.||+..
T Consensus       180 ~i~~~-~~i~~L~~ll~~~~~~~~~~~a~-~~L~~l~~~  216 (529)
T 1jdh_A          180 IILAS-GGPQALVNIMRTYTYEKLLWTTS-RVLKVLSVC  216 (529)
T ss_dssp             HHHHT-THHHHHHHHHHHCCCHHHHHHHH-HHHHHHTTS
T ss_pred             HHHHC-CCHHHHHHHHHhCChHHHHHHHH-HHHHHHhcC
Confidence            88765 66899999998774444666666 778888753

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=93.82  E-value=1.3  Score=44.63  Aligned_cols=181  Identities=14%  Similarity=0.141  Sum_probs=109.1

Q ss_pred             hhcCCCChhHHHHHHHHHHHhhhc-chhhHHHhhhhHHHHHHHHhhccCchhHHhh----HH-------HHHHHH-HHhc
Q psy4703         149 VFDTSAPMDKRVTAVNNLVVLARE-MSGAEMLLKSGVAKQINTLLKCETNEEIYLG----EE-------DFITSI-IKQG  215 (401)
Q Consensus       149 ~~~~~~~~~~~~~a~~~L~~l~~~-~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA----~e-------~fi~~i-~~~g  215 (401)
                      ++..+.+.+.+..++..|.-+... +.-...+...|++..+..+++ +.++++...    ..       .+-..+ ..++
T Consensus       108 lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~  186 (510)
T 3ul1_B          108 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA  186 (510)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            344444455556666666555432 233445556688999999998 666666332    11       111233 3456


Q ss_pred             HHHHHHHHcCCChh-----HHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhc
Q psy4703         216 VDILKRLYMSKNEN-----IRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL  290 (401)
Q Consensus       216 v~~Lk~l~~s~~d~-----i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~  290 (401)
                      ++.|-.++.+.+..     +...+...|+.+...  .+... .  -.....+....-++|  ...+++.+.+|+..|+|+
T Consensus       187 i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~--~~~~~-~--~~~~~~~lp~L~~LL--~~~~~~v~~~A~~aL~~L  259 (510)
T 3ul1_B          187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN--KNPAP-P--LDAVEQILPTLVRLL--HHNDPEVLADSCWAISYL  259 (510)
T ss_dssp             HHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC--CSSCC-C--HHHHHHHHHHHHHHT--TCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc--ccchh-H--HHHHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHH
Confidence            88999998754432     112333344444331  11110 0  011122333333444  345778999999999999


Q ss_pred             cCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         291 TLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       291 ~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      +-.++-+-+++.+...+..|++++.+. +..+...++ .++.||+..-+
T Consensus       260 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al-~aL~nl~~~~~  306 (510)
T 3ul1_B          260 TDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPAL-RAIGNIVTGTD  306 (510)
T ss_dssp             TSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHH-HHHHHHTTSCH
T ss_pred             hhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHH-HHHHHhhcCCH
Confidence            988776666777778899999999887 777888888 88999875544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=93.73  E-value=0.095  Score=52.96  Aligned_cols=175  Identities=18%  Similarity=0.185  Sum_probs=109.1

Q ss_pred             CChhHHHHHHHHHHHhhh-c-chhhHHHhhhhHHHHHHHHhhccCc-hhHHhhH-----------HHHHHHH-HHhcHHH
Q psy4703         154 APMDKRVTAVNNLVVLAR-E-MSGAEMLLKSGVAKQINTLLKCETN-EEIYLGE-----------EDFITSI-IKQGVDI  218 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~-~-~~gae~~~~e~~v~~L~~ll~~~~~-~e~~lA~-----------e~fi~~i-~~~gv~~  218 (401)
                      .+.+.+..++..+..+.. . ......+...+++..+..+++ ..+ +++...-           .+....+ ..++++.
T Consensus        86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~  164 (528)
T 4b8j_A           86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-REDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI  164 (528)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-CTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHH
Confidence            345566666666644422 2 233455556778888888887 443 6653321           1122233 3357999


Q ss_pred             HHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCC-HHHH
Q psy4703         219 LKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD-AEVK  297 (401)
Q Consensus       219 Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~-~~vk  297 (401)
                      |-.++++.++.++..|+..|+.+...+ ...-......|....|.    .+| ....+++.++.|+..|++++-. |...
T Consensus       165 L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~i~~~g~l~~Ll----~lL-~~~~~~~v~~~a~~~L~~L~~~~~~~~  238 (528)
T 4b8j_A          165 FVKLLGSSSDDVREQAVWALGNVAGDS-PKCRDLVLANGALLPLL----AQL-NEHTKLSMLRNATWTLSNFCRGKPQPS  238 (528)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHTTCHHHHH----HTC-CTTCCHHHHHHHHHHHHHHHCSSSCCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHCCcHHHHH----HHH-hcCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence            999999989999998888888886421 11000000112222222    222 2345778999999999999866 3333


Q ss_pred             HhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         298 EALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       298 e~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      ...+  ...+..|+.++.+. +..+...++ .+|.||+..-+
T Consensus       239 ~~~~--~~~l~~L~~lL~~~-~~~v~~~a~-~aL~~l~~~~~  276 (528)
T 4b8j_A          239 FEQT--RPALPALARLIHSN-DEEVLTDAC-WALSYLSDGTN  276 (528)
T ss_dssp             HHHH--TTHHHHHHHHTTCC-CHHHHHHHH-HHHHHHTSSCH
T ss_pred             HHHH--HHHHHHHHHHHCCC-CHHHHHHHH-HHHHHHHcCCH
Confidence            3332  56788999999877 778888888 99999996554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.69  E-value=0.36  Score=45.01  Aligned_cols=70  Identities=17%  Similarity=0.113  Sum_probs=60.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703          55 AVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (401)
Q Consensus        55 ~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l  124 (401)
                      ...++.|+.++|++.+...++.+|.|+.....+-+.++-.|+|+.|...++.+.+++|........++.+
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999875554444433

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=93.66  E-value=1.2  Score=47.63  Aligned_cols=153  Identities=16%  Similarity=0.140  Sum_probs=85.1

Q ss_pred             CCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhh-H---HHH-------HHHH-HHhcHHHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLG-E---EDF-------ITSI-IKQGVDILK  220 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA-~---e~f-------i~~i-~~~gv~~Lk  220 (401)
                      ..+.+.+..++..|..+.........+...+++..|..+++ +.++.+... .   .+.       ...+ ..++++.|-
T Consensus       204 ~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv  282 (780)
T 2z6g_A          204 TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG-SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMV  282 (780)
T ss_dssp             CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHH
Confidence            34677788888888777766556667777788999999998 556665332 1   111       1233 346788999


Q ss_pred             HHHcCCChhHHHHHHHhhhhccccCCCCCCCCC-CCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHh
Q psy4703         221 RLYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEA  299 (401)
Q Consensus       221 ~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~-~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~  299 (401)
                      .++++.+..++..++..|+.+...  .+..... ...|....|.+.++     ...+...+..++.-|..++..++.+..
T Consensus       283 ~lL~~~~~~v~~~a~~aL~~La~~--~~e~~~~i~~~~~i~~Lv~lL~-----~~~~~~~~~~a~~aL~~Ls~~~~~~~~  355 (780)
T 2z6g_A          283 ALLNKTNVKFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMR-----TYTYEKLLWTTSRVLKVLSVCSSNKPA  355 (780)
T ss_dssp             HGGGCCCHHHHHHHHHHHHHHHTT--CHHHHHHHHTTTHHHHHHHHHT-----TCCCHHHHHHHHHHHHHHHTSTTHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHcCCHHHHHHHHh-----cCCHHHHHHHHHHHHHHhhcChHHHHH
Confidence            999887766655554455544431  1111101 11233334444433     122222333456667777777777666


Q ss_pred             hcCCHHHHHHHHHHH
Q psy4703         300 LIEDKPALAALVDVA  314 (401)
Q Consensus       300 ~~~d~~~l~~l~~~~  314 (401)
                      +++. ..+..|+.++
T Consensus       356 i~~~-g~l~~Ll~lL  369 (780)
T 2z6g_A          356 IVEA-GGMQALGLHL  369 (780)
T ss_dssp             HHHT-THHHHHGGGT
T ss_pred             HHHh-chHHHHHHHH
Confidence            5432 2334444433

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=93.60  E-value=0.34  Score=48.94  Aligned_cols=180  Identities=14%  Similarity=0.117  Sum_probs=113.8

Q ss_pred             hhcCCCChhHHHHHHHHHHHhhhcchh-hHHHhhhhHHHHHHHHhhccCchhHHhhH----HHHH-------HH-HHHhc
Q psy4703         149 VFDTSAPMDKRVTAVNNLVVLAREMSG-AEMLLKSGVAKQINTLLKCETNEEIYLGE----EDFI-------TS-IIKQG  215 (401)
Q Consensus       149 ~~~~~~~~~~~~~a~~~L~~l~~~~~g-ae~~~~e~~v~~L~~ll~~~~~~e~~lA~----e~fi-------~~-i~~~g  215 (401)
                      ++..+.+...+..++..|..+...... ...+...+++..+..+++ +.++++...-    ..+.       .. +..++
T Consensus       138 ~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~  216 (530)
T 1wa5_B          138 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA  216 (530)
T ss_dssp             TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCc
Confidence            333333566777777777766664332 344445677888888888 5566663321    1111       22 23467


Q ss_pred             HHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCC-H
Q psy4703         216 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD-A  294 (401)
Q Consensus       216 v~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~-~  294 (401)
                      ++.|-.++.+.+..++..|+..|+.+......... ...    ...+...+-++|.  ..+++.+..|+..|.+++-. +
T Consensus       217 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~----~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~  289 (530)
T 1wa5_B          217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD-WSV----VSQALPTLAKLIY--SMDTETLVDACWAISYLSDGPQ  289 (530)
T ss_dssp             HHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC-HHH----HGGGHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc-HHH----HHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCH
Confidence            99999999888888887777777777653211110 001    1122333334443  23678899999999999964 5


Q ss_pred             HHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         295 EVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       295 ~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      +..+.+++ ...+..|++++.+. +..+...++ .++.||+...+
T Consensus       290 ~~~~~~~~-~~~v~~Lv~lL~~~-~~~v~~~a~-~~L~~l~~~~~  331 (530)
T 1wa5_B          290 EAIQAVID-VRIPKRLVELLSHE-STLVQTPAL-RAVGNIVTGND  331 (530)
T ss_dssp             HHHHHHHH-TTCHHHHHHGGGCS-CHHHHHHHH-HHHHHHTTSCH
T ss_pred             HHHHHHHh-cCcHHHHHHHHCCC-ChhhHHHHH-HHHHHHHcCCH
Confidence            55665543 46788899999876 667888888 89999986554

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=93.51  E-value=0.067  Score=54.23  Aligned_cols=174  Identities=13%  Similarity=0.150  Sum_probs=107.5

Q ss_pred             CChhHHHHHHHHHHHhhhc--chhhHHHhhhhHHHHHHHHhhccC-chhHHhhH-----------HHHHHHH-HHhcHHH
Q psy4703         154 APMDKRVTAVNNLVVLARE--MSGAEMLLKSGVAKQINTLLKCET-NEEIYLGE-----------EDFITSI-IKQGVDI  218 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~~--~~gae~~~~e~~v~~L~~ll~~~~-~~e~~lA~-----------e~fi~~i-~~~gv~~  218 (401)
                      .+.+.+..++..+..+...  ......+...+++..+..++. +. ++++...-           ......+ ..++++.
T Consensus        99 ~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~-~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~  177 (530)
T 1wa5_B           99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR-ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL  177 (530)
T ss_dssp             SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS-TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHH
Confidence            3455666666666544321  222344445677888888887 43 56653321           1111223 3567999


Q ss_pred             HHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCH--HH
Q psy4703         219 LKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDA--EV  296 (401)
Q Consensus       219 Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~--~v  296 (401)
                      |-.++++.++.++..|+..|+.+...+. .....-...|..-.|.+    ++..  .+++.++.|+..|++++-..  ..
T Consensus       178 Lv~lL~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~L~~----ll~~--~~~~v~~~a~~~L~~L~~~~~~~~  250 (530)
T 1wa5_B          178 FIQLLYTGSVEVKEQAIWALGNVAGDST-DYRDYVLQCNAMEPILG----LFNS--NKPSLIRTATWTLSNLCRGKKPQP  250 (530)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHH----GGGS--CCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCCCc-cchHHHHHcCcHHHHHH----Hhcc--CCHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999998899999999999988874210 00000011122323333    3322  56788999999999998653  22


Q ss_pred             HHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         297 KEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       297 ke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      ....  ....+..|+.++.+. +..+...++ .+|.||+...+
T Consensus       251 ~~~~--~~~~l~~L~~lL~~~-d~~v~~~a~-~~L~~L~~~~~  289 (530)
T 1wa5_B          251 DWSV--VSQALPTLAKLIYSM-DTETLVDAC-WAISYLSDGPQ  289 (530)
T ss_dssp             CHHH--HGGGHHHHHHHTTCC-CHHHHHHHH-HHHHHHHSSCH
T ss_pred             cHHH--HHhHHHHHHHHHcCC-CHHHHHHHH-HHHHHHhCCCH
Confidence            2222  356788899998877 777888888 89999996655

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=93.28  E-value=4.6  Score=36.59  Aligned_cols=165  Identities=16%  Similarity=0.076  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHHHhhhcch-hhHHHhhhhHHHHHHHHhhccCchhHHhhH-----------HHHHHHHH-HhcHHHHHHHH
Q psy4703         157 DKRVTAVNNLVVLAREMS-GAEMLLKSGVAKQINTLLKCETNEEIYLGE-----------EDFITSII-KQGVDILKRLY  223 (401)
Q Consensus       157 ~~~~~a~~~L~~l~~~~~-gae~~~~e~~v~~L~~ll~~~~~~e~~lA~-----------e~fi~~i~-~~gv~~Lk~l~  223 (401)
                      +.+..++..+..+...+. .-..+...|++..|.++++ +.++++...-           ++.-..|. .+|++.|-+++
T Consensus        25 ~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~-s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL  103 (233)
T 3tt9_A           25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK-VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVL  103 (233)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHH
Confidence            444555556555554333 3355667788999999998 6666664321           11113443 45699999999


Q ss_pred             c-CCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcC------------------CCCCchhHHhHH
Q psy4703         224 M-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVN------------------PARDPDIRRWAA  284 (401)
Q Consensus       224 ~-s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~------------------~~~~~~~~~~~~  284 (401)
                      + +++.+++..|...|.-|...   +..       .. .+.+.+=.-|+.                  ...+++.+..|+
T Consensus       104 ~~~~~~~~~e~a~~aL~nLS~~---~~~-------k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~  172 (233)
T 3tt9_A          104 KQTRDLETKKQITGLLWNLSSN---DKL-------KN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVT  172 (233)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHTS---GGG-------HH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcC---hhh-------HH-HHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHH
Confidence            7 67888877766666666431   111       11 223333222222                  123668899999


Q ss_pred             hhhhhccC-CHHHHHhhcCCHHHHHHHHHHHhcC------CCCcchhhhhhhHHhhcc
Q psy4703         285 EGLAYLTL-DAEVKEALIEDKPALAALVDVASSV------KYKNVWNGTQSDALKDVD  335 (401)
Q Consensus       285 eglay~~~-~~~vke~~~~d~~~l~~l~~~~~~~------~~~~~~~~~~~~~~~n~~  335 (401)
                      --|..+|. +++.|..+.+-+-.+..|+.++++.      .++++-.. + .++.||+
T Consensus       173 ~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~-v-~~L~nLs  228 (233)
T 3tt9_A          173 GCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENC-V-CILHNLS  228 (233)
T ss_dssp             HHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHH-H-HHHHHHC
T ss_pred             HHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHH-H-HHHHHHH
Confidence            99999986 8999999988777788888887653      12344444 4 5899998

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.27  E-value=0.57  Score=39.92  Aligned_cols=114  Identities=13%  Similarity=0.111  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4703          46 RATCLKNRAAVYLKQNQN------DKVIEDCSKSLEIVPD--------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE  111 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y------~~Ai~~~~kAL~ldP~--------~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~  111 (401)
                      +++.|.+......+.|+.      ++-++.|++|+..-|.        ++..|.+.|. +..+++.++|.+.|+.++.++
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHh
Confidence            788888888888878888      8899999999988764        3556677774 477799999999999999985


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHH
Q psy4703         112 PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVV  168 (401)
Q Consensus       112 P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~  168 (401)
                      ..-.-++...++.....+..        .++...+.++.. .+...+....+.++|-.
T Consensus        91 KkFAKiwi~~AqFEiRqgnl--------~kARkILg~AiG~~~k~~~~le~a~~nl~~  140 (161)
T 4h7y_A           91 KKFAFVHISFAQFELSQGNV--------KKSKQLLQKAVERGAVPLEMLEIALRNLNL  140 (161)
T ss_dssp             TTBHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHTTCBCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcccH--------HHHHHHHHHHhccCCCcHHHHHHHHHhhhc
Confidence            55444444444444443333        344556777776 55556666667666644

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.17  E-value=0.87  Score=50.99  Aligned_cols=115  Identities=12%  Similarity=0.021  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-------------------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTA-------------------EESHERATCLKNRAAVYLKQNQNDKVIEDCS   71 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-------------------p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~   71 (401)
                      .-+-+|..++..|++++|..+|.+|-.-..                   +.....+.+|......+.+.+-++.+++...
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            447899999999999999999988732110                   0112244567778888889999999999999


Q ss_pred             HHHHhCC-CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          72 KSLEIVP-DDPK----ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        72 kAL~ldP-~~~k----A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                      .||+..+ ++..    .|.++=..+..+|+|++|+..+-.    .|+...-...|+++-..+-
T Consensus       924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~----~pd~~~r~~cLr~LV~~lc  982 (1139)
T 4fhn_B          924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV----LSTTPLKKSCLLDFVNQLT  982 (1139)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH----HHHSSSCHHHHHHHHHHHH
T ss_pred             HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh----CCCHHHHHHHHHHHHHHHH
Confidence            9999765 3332    577788899999999999887643    2443334555555544443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=93.15  E-value=0.45  Score=49.53  Aligned_cols=175  Identities=14%  Similarity=0.143  Sum_probs=111.0

Q ss_pred             CChhHHHHHHHHHHHhhhcchhhHHHhhh-hHHHHHHHHhhccCchhHHhhH----------HHHHHHHH-HhcHHHHHH
Q psy4703         154 APMDKRVTAVNNLVVLAREMSGAEMLLKS-GVAKQINTLLKCETNEEIYLGE----------EDFITSII-KQGVDILKR  221 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~~~~gae~~~~e-~~v~~L~~ll~~~~~~e~~lA~----------e~fi~~i~-~~gv~~Lk~  221 (401)
                      .+...+..+...|..+.........++.. +++..+..++..+.++++...-          .+....+. ..+++.|-.
T Consensus        26 ~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~  105 (644)
T 2z6h_A           26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK  105 (644)
T ss_dssp             SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHH
Confidence            45566777777777776655443444433 6677777777622355553321          11223333 356899999


Q ss_pred             HHcCCChhHHHHHHHhhhhccccCCCCCCCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC-CHHHHHh
Q psy4703         222 LYMSKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL-DAEVKEA  299 (401)
Q Consensus       222 l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~-~~~vke~  299 (401)
                      ++++.++.++..|+..|+.+....  +...+.+ ..|-    ....-++|..+  ++..+..+++.|.-++. .++.|+.
T Consensus       106 lL~~~~~~v~~~A~~aL~nL~~~~--~~~~~~v~~~g~----i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~~  177 (644)
T 2z6h_A          106 MLGSPVDSVLFYAITTLHNLLLHQ--EGAKMAVRLAGG----LQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLI  177 (644)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHS--TTHHHHHHHTTH----HHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHhCc--chhHHHHHHCCC----hHHHHHHHCcC--CHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            999989999888888888887532  1111111 1232    23333444433  45677778888888886 7899988


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCC
Q psy4703         300 LIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAF  338 (401)
Q Consensus       300 ~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~  338 (401)
                      +++. ..+..|++++++.....+.+.++ .++.||+..-
T Consensus       178 i~~~-g~v~~Lv~lL~~~~~~~~~~~a~-~~L~nLs~~~  214 (644)
T 2z6h_A          178 ILAS-GGPQALVNIMRTYTYEKLLWTTS-RVLKVLSVCS  214 (644)
T ss_dssp             HHHT-THHHHHHHHHTTCCCHHHHHHHH-HHHHHHTTCT
T ss_pred             HHHc-CChHHHHHHHHcCChHHHHHHHH-HHHHHHhcCc
Confidence            8765 67999999998773344667777 8888888543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.05  E-value=1.4  Score=43.01  Aligned_cols=98  Identities=8%  Similarity=-0.008  Sum_probs=75.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC----------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4703          54 AAVYLKQNQNDKVIEDCSKSLEIVPD----------D------------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE  111 (401)
Q Consensus        54 a~~y~klg~y~~Ai~~~~kAL~ldP~----------~------------~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~  111 (401)
                      |......|+.+.|+..+.+|+.+...          +            ..+...++.++..+|++++|+..+.+++..+
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~  201 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH  201 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            33344568999999999999988521          1            1345567888899999999999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703         112 PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus       112 P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      |-+..++..+.+++...++...+...+......+.+.+..
T Consensus       202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~  241 (388)
T 2ff4_A          202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI  241 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999998888877664444433334433

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=93.04  E-value=0.29  Score=47.52  Aligned_cols=117  Identities=19%  Similarity=0.152  Sum_probs=81.2

Q ss_pred             Hhc-HHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhc
Q psy4703         213 KQG-VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL  290 (401)
Q Consensus       213 ~~g-v~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~  290 (401)
                      ..| ++.|-+++++++++++..|...|..|.. +.++.+.... ..|..-.|.+...     ...+++.++.|+--|.-+
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~-~~~~~~k~~i~~~G~Ip~Lv~lL~-----~~~~~~~~~~A~~aL~nL  198 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSW-RADVNSKKTLREVGSVKALMECAL-----EVKKESTLKSVLSALWNL  198 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT-TCCHHHHHHHHHTTHHHHHHHHHH-----HCCCHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhc-cCCHHHHHHHHHCCCHHHHHHHHh-----cCCCHHHHHHHHHHHHHH
Confidence            466 9999999999999999888888877743 1112211111 1233333333321     223567888899999988


Q ss_pred             cC-CHHHHHhhcCCHHHHHHHHHHHhcCCCC---cchhhhhhhHHhhccc
Q psy4703         291 TL-DAEVKEALIEDKPALAALVDVASSVKYK---NVWNGTQSDALKDVDK  336 (401)
Q Consensus       291 ~~-~~~vke~~~~d~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~n~~~  336 (401)
                      |. .++.|..++.+...|..|++++++..+.   .+.--++ .++.||+.
T Consensus       199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~-~aL~nLs~  247 (354)
T 3nmw_A          199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG-GILRNVSS  247 (354)
T ss_dssp             HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHH-HHHHHHHH
T ss_pred             HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHH-HHHHHHHh
Confidence            87 8899999998888999999999876332   2556566 78899986

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.84  E-value=0.52  Score=47.97  Aligned_cols=80  Identities=15%  Similarity=0.076  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a   90 (401)
                      -+...|....-+..+..|..+|.+|+.+. |+   ....|..+|..+...|++-+|+-+|.+++.....++.|.-++...
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~---~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~  229 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-PS---NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhC-CC---CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence            45678888888999999999999999999 77   889999999999999999999999999999988899999999887


Q ss_pred             HHHc
Q psy4703          91 YEAI   94 (401)
Q Consensus        91 ~~~l   94 (401)
                      +.+.
T Consensus       230 f~~~  233 (497)
T 1ya0_A          230 LSKA  233 (497)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=92.52  E-value=0.45  Score=51.34  Aligned_cols=184  Identities=13%  Similarity=0.063  Sum_probs=114.9

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHH-hh---HHHHH---------HH-
Q psy4703         145 MFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIY-LG---EEDFI---------TS-  210 (401)
Q Consensus       145 ~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~-lA---~e~fi---------~~-  210 (401)
                      .+-.++. .++...+..++..|.-+.........+...|++..|..++. +.++... .|   .....         .. 
T Consensus       499 ~LV~LL~-s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~-s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~  576 (810)
T 3now_A          499 ALCALAK-TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL-EGTEKGKRHATQALARIGITINPEVSFSGQ  576 (810)
T ss_dssp             HHHHHHT-CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred             HHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-cCCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence            3333333 45566777777777666655555566777888999999998 5554432 22   11111         00 


Q ss_pred             HHHhcHHHHHHHHcCCCh-hHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhh
Q psy4703         211 IIKQGVDILKRLYMSKNE-NIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAY  289 (401)
Q Consensus       211 i~~~gv~~Lk~l~~s~~d-~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay  289 (401)
                      ....+++.|-.+++++++ ....-|+.+|+.|.+. +++.......+|-.    ..+-.+|..  .++..++.|++-|+.
T Consensus       577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~-~d~~~~~Ii~aG~l----~~Lv~LL~s--~~~~Vq~~A~~~L~N  649 (810)
T 3now_A          577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASM-NESVRQRIIKEQGV----SKIEYYLME--DHLYLTRAAAQCLCN  649 (810)
T ss_dssp             HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHH----HHHHHHHHS--CCTTHHHHHHHHHHH
T ss_pred             hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCH----HHHHHHHcC--CCHHHHHHHHHHHHH
Confidence            123478888888875544 3334566677766643 11110001111222    222333432  345789999999999


Q ss_pred             ccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         290 LTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       290 ~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      ++..++....++++...|+.|+.++.+. +..+.=-++ .+|.|||...|
T Consensus       650 La~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa-~ALanLt~~s~  697 (810)
T 3now_A          650 LVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACA-GALAIITSVSV  697 (810)
T ss_dssp             HTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHH-HHHHHHHHHCH
T ss_pred             HhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHH-HHHHHHhCCCH
Confidence            9999999999997678999999999887 666666666 88888886444

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=91.97  E-value=2.8  Score=42.33  Aligned_cols=181  Identities=15%  Similarity=0.143  Sum_probs=106.5

Q ss_pred             hhcCCCChhHHHHHHHHHHHhhhcchh-hHHHhhhhHHHHHHHHhhccCchhHHhh----HH-------HHHHHH-HHhc
Q psy4703         149 VFDTSAPMDKRVTAVNNLVVLAREMSG-AEMLLKSGVAKQINTLLKCETNEEIYLG----EE-------DFITSI-IKQG  215 (401)
Q Consensus       149 ~~~~~~~~~~~~~a~~~L~~l~~~~~g-ae~~~~e~~v~~L~~ll~~~~~~e~~lA----~e-------~fi~~i-~~~g  215 (401)
                      ++....+.+.+..++..|.-+...... ...+...|++..+..++. +.++++...    ..       .+-..+ ..++
T Consensus       127 lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~-s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~  205 (529)
T 3tpo_A          127 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGA  205 (529)
T ss_dssp             HHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCC
Confidence            333344455666666666655543333 345556778999999888 666666321    11       111233 3456


Q ss_pred             HHHHHHHHcCCChh-----HHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhc
Q psy4703         216 VDILKRLYMSKNEN-----IRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL  290 (401)
Q Consensus       216 v~~Lk~l~~s~~d~-----i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~  290 (401)
                      ++.|-.++.+.+..     +...+...|+.+... .... . .  -.....+....-++|  ...+++.+.+|+-.|+|+
T Consensus       206 i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~-~~~~-~-~--~~~~~~~lp~L~~LL--~~~~~~v~~~a~~aL~~l  278 (529)
T 3tpo_A          206 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN-KNPA-P-P--LDAVEQILPTLVRLL--HHNDPEVLADSCWAISYL  278 (529)
T ss_dssp             HHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC-CTTC-C-C--HHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc-ccch-h-h--HHHHhhHHHHHHHHh--cCCcHHHHHHHHHHHHHh
Confidence            88888888754322     111233344433321 1111 0 0  011112223333333  245778999999999999


Q ss_pred             cCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         291 TLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       291 ~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      +-.++-+-+++.+...+..|++++.+. +..+...++ .++.||...-+
T Consensus       279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~-~aL~nl~~~~~  325 (529)
T 3tpo_A          279 TDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPAL-RAIGNIVTGTD  325 (529)
T ss_dssp             HSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHH-HHHHHHTTSCH
T ss_pred             hhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHH-HHHHHHHccch
Confidence            987776666666778899999999887 667777778 88888875444

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=91.90  E-value=0.45  Score=48.30  Aligned_cols=175  Identities=18%  Similarity=0.170  Sum_probs=111.9

Q ss_pred             CCChhHHHHHHHHHHHhhhcchh-hHHHhhhhHHHHHHHHhhccCchhHHhhH-----------HHHHHHH-HHhcHHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSG-AEMLLKSGVAKQINTLLKCETNEEIYLGE-----------EDFITSI-IKQGVDIL  219 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~g-ae~~~~e~~v~~L~~ll~~~~~~e~~lA~-----------e~fi~~i-~~~gv~~L  219 (401)
                      ..+.+.+..+...|..+...... ...+...+++..+..++. +.++.+...-           +.....+ ..++++.|
T Consensus       262 ~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L  340 (529)
T 3tpo_A          262 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF  340 (529)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc-CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHH
Confidence            34455566666666655554333 344445677888888888 5566553321           1222333 44668999


Q ss_pred             HHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC--CHHH
Q psy4703         220 KRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL--DAEV  296 (401)
Q Consensus       220 k~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~--~~~v  296 (401)
                      ..++++.++.++..|...|+.+.... .+. .... ..|    +....-.+|.  +.+.+.++.|+--|.-++.  +++-
T Consensus       341 ~~LL~~~~~~i~~~a~~aL~nl~~~~-~~~-~~~v~~~g----~i~~Lv~lL~--~~~~~v~~~A~~aL~nl~~~~~~~~  412 (529)
T 3tpo_A          341 PSLLTNPKTNIQKEATWTMSNITAGR-QDQ-IQQVVNHG----LVPFLVGVLS--KADFKTQKAAAWAITNYTSGGTVEQ  412 (529)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHTSC-HHH-HHHHHHTT----HHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhccc-HHH-HHHHHhcC----cHHHHHHHhc--CCCHHHHHHHHHHHHHHHcCCCHHH
Confidence            99999999999999999998887521 111 0000 011    1222222332  3466889999999998876  5666


Q ss_pred             HHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         297 KEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       297 ke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      ...|++ ...++.|++++.+. |..+..-++ ..|.|+.+.-+
T Consensus       413 ~~~l~~-~g~i~~L~~LL~~~-d~~i~~~~L-~aL~nil~~~~  452 (529)
T 3tpo_A          413 IVYLVH-CGIIEPLMNLLSAK-DTKIIQVIL-DAISNIFQAAE  452 (529)
T ss_dssp             HHHHHH-TTCHHHHHHGGGCS-CHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHH-CcCHHHHHHHhcCC-CHHHHHHHH-HHHHHHHHHhH
Confidence            666653 55788999999887 888888888 88888875544

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=91.35  E-value=0.61  Score=37.75  Aligned_cols=87  Identities=16%  Similarity=0.058  Sum_probs=59.1

Q ss_pred             HHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHH
Q psy4703         216 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAE  295 (401)
Q Consensus       216 v~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~  295 (401)
                      ++.|..+++..++.+|..|+..|..++..            ..    .....+.|.  ..++..|.+|++.|+.+.    
T Consensus        44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~~------------~a----~~~L~~~L~--d~~~~VR~~A~~aL~~~~----  101 (131)
T 1te4_A           44 FEPLLESLSNEDWRIRGAAAWIIGNFQDE------------RA----VEPLIKLLE--DDSGFVRSGAARSLEQIG----  101 (131)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCSH------------HH----HHHHHHHHH--HCCTHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCH------------HH----HHHHHHHHc--CCCHHHHHHHHHHHHHhC----
Confidence            56777777878888888888888887631            11    222233332  346688999999998763    


Q ss_pred             HHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhh
Q psy4703         296 VKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKD  333 (401)
Q Consensus       296 vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n  333 (401)
                             |+.++..|++++++. +..+...++ ..|.+
T Consensus       102 -------~~~a~~~L~~~l~d~-~~~vr~~A~-~aL~~  130 (131)
T 1te4_A          102 -------GERVRAAMEKLAETG-TGFARKVAV-NYLET  130 (131)
T ss_dssp             -------SHHHHHHHHHHTTSC-CTHHHHHHH-HHGGG
T ss_pred             -------cHHHHHHHHHHHhCC-CHHHHHHHH-HHHHh
Confidence                   677888888888765 666666666 55443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=91.15  E-value=8.3  Score=34.76  Aligned_cols=27  Identities=15%  Similarity=0.214  Sum_probs=15.0

Q ss_pred             HHHHHHHHcCCChhHHHHHHHhhhhcc
Q psy4703         216 VDILKRLYMSKNENIRVRALVGLCKLG  242 (401)
Q Consensus       216 v~~Lk~l~~s~~d~i~~ralvgLckl~  242 (401)
                      ++.|..++++.++.++..|+..|+.++
T Consensus       130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A          130 VEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence            455555555555666666666665554

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=91.01  E-value=0.34  Score=48.40  Aligned_cols=118  Identities=24%  Similarity=0.201  Sum_probs=84.1

Q ss_pred             HHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhh
Q psy4703         211 IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAY  289 (401)
Q Consensus       211 i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay  289 (401)
                      +..+|++.|-++++++++.+...|...|..+...  ++.+.... ..|..-.|.+..+     .+.+++.+.+|+.-|..
T Consensus        41 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~~i~~~G~i~~Lv~lL~-----~~~~~~~~~~a~~aL~n  113 (457)
T 1xm9_A           41 YQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKLETRRQNGIREAVSLLR-----RTGNAEIQKQLTGLLWN  113 (457)
T ss_dssp             HHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHHHT-----TCCCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHh-----hCCCHHHHHHHHHHHHH
Confidence            3456699999999999999988888888877752  22222112 2344444555443     13467899999999999


Q ss_pred             ccCCHHHHHhhcCCHHHHHHHHHHHhc--------C-------CCCcchhhhhhhHHhhcccCCc
Q psy4703         290 LTLDAEVKEALIEDKPALAALVDVASS--------V-------KYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       290 ~~~~~~vke~~~~d~~~l~~l~~~~~~--------~-------~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      ++.+++.|+.+++  ..+..|++++..        .       .+..+..-++ .+|.||+.. |
T Consensus       114 La~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~-~aL~nLs~~-~  174 (457)
T 1xm9_A          114 LSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNAT-GCLRNLSSA-D  174 (457)
T ss_dssp             HHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHH-HHHHHHTTS-H
T ss_pred             HhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHHHHHHH-HHHHHHccC-H
Confidence            9999999999986  899999999932        1       1223445666 889999976 6

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.77  E-value=2.5  Score=44.22  Aligned_cols=46  Identities=13%  Similarity=-0.140  Sum_probs=28.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703          57 YLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (401)
Q Consensus        57 y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~ka  107 (401)
                      .+.+|++++|.+.+.     ..++...|.++|..+.+.++++.|..+|.++
T Consensus       662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            345666666666542     2245566666666666666666666666654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=90.00  E-value=0.55  Score=47.47  Aligned_cols=175  Identities=18%  Similarity=0.169  Sum_probs=113.0

Q ss_pred             CCChhHHHHHHHHHHHhhhcchh-hHHHhhhhHHHHHHHHhhccCchhHHhhH-----------HHHHHHH-HHhcHHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSG-AEMLLKSGVAKQINTLLKCETNEEIYLGE-----------EDFITSI-IKQGVDIL  219 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~g-ae~~~~e~~v~~L~~ll~~~~~~e~~lA~-----------e~fi~~i-~~~gv~~L  219 (401)
                      ..+.+.+..+...|..+...... ...+...+++..+..++. +.++.+...-           +.....+ ..++++.|
T Consensus       243 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L  321 (510)
T 3ul1_B          243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF  321 (510)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGC
T ss_pred             cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc-CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHH
Confidence            44556666777777766654333 344445677888888888 5565553321           2222333 34568888


Q ss_pred             HHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC--CHHH
Q psy4703         220 KRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL--DAEV  296 (401)
Q Consensus       220 k~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~--~~~v  296 (401)
                      ..++++.++.++..|...|+.+.... .+. .... ..|    +....-.+|.  ..+.+.|+.|+--|+-++.  +++.
T Consensus       322 ~~LL~~~~~~v~~~A~~aL~nl~a~~-~~~-~~~v~~~g----~i~~Lv~lL~--~~~~~v~~~Aa~aL~Nl~~~~~~~~  393 (510)
T 3ul1_B          322 PSLLTNPKTNIQKEATWTMSNITAGR-QDQ-IQQVVNHG----LVPFLVGVLS--KADFKTQKEAAWAITNYTSGGTVEQ  393 (510)
T ss_dssp             C-CTTCSSHHHHHHHHHHHHHHTTSC-HHH-HHHHHHTT----HHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcCc-HHH-HHHHHhcC----CHHHHHHHHc--CCCHHHHHHHHHHHHHHHccCCHHH
Confidence            89999999999999999999887521 111 0000 011    1222223332  3467889999999988876  5666


Q ss_pred             HHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         297 KEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       297 ke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      ...|++ ...++.|++++++. |..+..-++ ..|.|+.++.+
T Consensus       394 ~~~L~~-~g~i~~L~~LL~~~-d~~i~~~~L-~aL~nil~~~~  433 (510)
T 3ul1_B          394 IVYLVH-CGIIEPLMNLLSAK-DTKIIQVIL-DAISNIFQAAE  433 (510)
T ss_dssp             HHHHHH-TTCHHHHHHGGGCS-CHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHH-CCCHHHHHHHhcCC-CHHHHHHHH-HHHHHHHHHhH
Confidence            666664 46789999999888 888888888 88889876544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.78  E-value=4.1  Score=37.85  Aligned_cols=63  Identities=16%  Similarity=0.280  Sum_probs=57.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703          17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus        17 n~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      ..+++.|+.++|+......|+.. |.   ++.....+-..+.-.|+|+.|...++.+.+++|.....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-Cc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            46788999999999999999999 76   88888888899999999999999999999999987653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=89.58  E-value=1.8  Score=40.79  Aligned_cols=143  Identities=13%  Similarity=0.160  Sum_probs=88.3

Q ss_pred             CCChhHHHHHHHHHHHhhhcchh-hHHHhhhhHHHHHHHHhhccCchhHHhh----HHHHH--------HHHHHhcHHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSG-AEMLLKSGVAKQINTLLKCETNEEIYLG----EEDFI--------TSIIKQGVDIL  219 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~g-ae~~~~e~~v~~L~~ll~~~~~~e~~lA----~e~fi--------~~i~~~gv~~L  219 (401)
                      .++.+.+..++..+......++. ...+...+++..|..+++.+.++.+...    ..+++        .++..+|++.|
T Consensus        93 s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L  172 (296)
T 1xqr_A           93 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVL  172 (296)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHH
Confidence            45667788888888777665443 3555567889999999983234444322    22222        22345789999


Q ss_pred             HHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCC-HHHH
Q psy4703         220 KRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD-AEVK  297 (401)
Q Consensus       220 k~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~-~~vk  297 (401)
                      -.++++++..++..|...|+.+...  ++.....+ ..|-...|++    +|.  ..+++.+..|..+|..+.-. +...
T Consensus       173 ~~lL~~~d~~v~~~A~~aLs~L~~~--~~~~~~~vv~~g~i~~Lv~----LL~--~~d~~v~~~al~aL~~l~~~~~~~~  244 (296)
T 1xqr_A          173 MRAMQQQVQKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVA----LVR--TEHSPFHEHVLGALCSLVTDFPQGV  244 (296)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHH----HHT--SCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHhC--ChHHHHHHHHcCCHHHHHH----HHc--CCChhHHHHHHHHHHHHHhCChhHH
Confidence            9999999999999999888887753  21111111 1122222222    232  33678899999999776543 5555


Q ss_pred             HhhcCC
Q psy4703         298 EALIED  303 (401)
Q Consensus       298 e~~~~d  303 (401)
                      +....+
T Consensus       245 ~~~~~~  250 (296)
T 1xqr_A          245 RECREP  250 (296)
T ss_dssp             HHHHCG
T ss_pred             HHHhcc
Confidence            444433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.39  E-value=6  Score=39.33  Aligned_cols=103  Identities=12%  Similarity=0.021  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCH-
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE---IVPDDP-   81 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~---ldP~~~-   81 (401)
                      .+......+..++..|+|.+|.........-..  -+......++......|+..++|.+|...++++..   -.+.++ 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            455667789999999999999999988643221  11234567888889999999999999999998742   233333 


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          82 ---KALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        82 ---kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                         ..+...|..+...++|.+|..+|..+++.
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               34666789999999999999999988764

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=89.27  E-value=1.1  Score=47.74  Aligned_cols=122  Identities=11%  Similarity=0.037  Sum_probs=88.5

Q ss_pred             hcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCC-CCCCCCchHHHHHHHHhhhc-CCCCCchhHHhHHhhhhhcc
Q psy4703         214 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASI-RPFADGSTRKLAEACRRFLV-NPARDPDIRRWAAEGLAYLT  291 (401)
Q Consensus       214 ~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~-~~~~~~s~~~l~~~~~~~l~-~~~~~~~~~~~~~eglay~~  291 (401)
                      ++++.|..++.++++.|+..|.-.+|-+.....   .+ ..|.....-.-.+...-++. -...|.++|+.|+-.||-+|
T Consensus       606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e---~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt  682 (778)
T 3opb_A          606 VYWSTIENLMLDENVPLQRSTLELISNMMSHPL---TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA  682 (778)
T ss_dssp             HHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG---GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH---HHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            579999999999999999888888888886321   11 12222111111111222211 13468899999999999995


Q ss_pred             -CCHHHHHhhcCCHHHHHHHHHHHhcC-CCCcchhhhhhhHHhhcccCCc
Q psy4703         292 -LDAEVKEALIEDKPALAALVDVASSV-KYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       292 -~~~~vke~~~~d~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                       -+|.|-+.+++.+.++..|+.++... ++..+..-++ .++-|+..+-|
T Consensus       683 s~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~-~~l~NL~~~~~  731 (778)
T 3opb_A          683 TTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLL-MLFFGLFEVIP  731 (778)
T ss_dssp             HHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHH-HHHHHHHTTCC
T ss_pred             CCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHH-HHHHHHHHhhc
Confidence             79999999999999999999999983 3777888888 89999997655

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=89.15  E-value=8.8  Score=38.33  Aligned_cols=169  Identities=18%  Similarity=0.158  Sum_probs=103.8

Q ss_pred             HHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhcc----------CchhHHh-h---HHHHH-------HHHH-Hhc-HH
Q psy4703         161 TAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCE----------TNEEIYL-G---EEDFI-------TSII-KQG-VD  217 (401)
Q Consensus       161 ~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~----------~~~e~~l-A---~e~fi-------~~i~-~~g-v~  217 (401)
                      ++...|.-++..++--..+...|++..|..++..+          .++.+.. |   ..+..       ..+. ..| ++
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  246 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  246 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence            44444444444333344555678888888888410          1122211 1   11111       2232 456 99


Q ss_pred             HHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCC-CCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC-CHH
Q psy4703         218 ILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFA-DGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL-DAE  295 (401)
Q Consensus       218 ~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~-~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~-~~~  295 (401)
                      .|-+++++++++++..|...|..|.. +.++.+..... .|..-.|.+.    |. ...+.+.++.|+--|.-+|. ..+
T Consensus       247 ~LV~LL~s~~~~v~~~A~~aL~nLs~-~~~~~~k~~I~~~GaI~~LV~l----Ll-~s~~~~v~~~A~~aL~nLs~~~~~  320 (458)
T 3nmz_A          247 ALVAQLKSESEDLQQVIASVLRNLSW-RADVNSKKTLREVGSVKALMEC----AL-EVKKESTLKSVLSALWNLSAHCTE  320 (458)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTS-SCCHHHHHHHHHTTHHHHHHHH----HT-TCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhc-CCCHHHHHHHHHcCCHHHHHHH----Hh-cCCCHHHHHHHHHHHHHHccCCHH
Confidence            99999999999999888888877743 11111111111 1222222222    22 23366788889999999998 889


Q ss_pred             HHHhhcCCHHHHHHHHHHHhcCCCC---cchhhhhhhHHhhccc
Q psy4703         296 VKEALIEDKPALAALVDVASSVKYK---NVWNGTQSDALKDVDK  336 (401)
Q Consensus       296 vke~~~~d~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~n~~~  336 (401)
                      .|..++.+...|..|++++.+..+.   .+.--++ .++.||+.
T Consensus       321 nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~-~aL~nLs~  363 (458)
T 3nmz_A          321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG-GILRNVSS  363 (458)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHH-HHHHHHHh
Confidence            9999998889999999999877332   2556566 78899986

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=88.29  E-value=2.4  Score=43.61  Aligned_cols=133  Identities=23%  Similarity=0.227  Sum_probs=84.7

Q ss_pred             HHHHHHHhhccCchhH-HhhHH---HHHHH---HHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCC
Q psy4703         185 AKQINTLLKCETNEEI-YLGEE---DFITS---IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADG  257 (401)
Q Consensus       185 v~~L~~ll~~~~~~e~-~lA~e---~fi~~---i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~  257 (401)
                      +..+.++++ +.+.++ .++|-   .+...   ..--.+..|.+-+++.|+.+|..|+-.||.++..            .
T Consensus        51 ~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~------------~  117 (591)
T 2vgl_B           51 FPDVVNCMQ-TDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD------------K  117 (591)
T ss_dssp             HHHHHHTTS-SSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG------------G
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChH------------H
Confidence            444555666 455544 44542   22221   1112344555556678888999998888888621            2


Q ss_pred             chHHHHHHHHhhhcCCCCCchhHHhHHhhhhhcc-CCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhccc
Q psy4703         258 STRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT-LDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDK  336 (401)
Q Consensus       258 s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~-~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~  336 (401)
                      -...|...+.+.|.  ..++..|+-|+..|.-+. ..|++-    .|..++..|.+++.+. +..|.++++ +.|.++..
T Consensus       118 ~~~~l~~~l~~~L~--d~~~~VRk~A~~al~~i~~~~p~~~----~~~~~~~~l~~lL~d~-d~~V~~~A~-~aL~~i~~  189 (591)
T 2vgl_B          118 ITEYLCEPLRKCLK--DEDPYVRKTAAVCVAKLHDINAQMV----EDQGFLDSLRDLIADS-NPMVVANAV-AALSEISE  189 (591)
T ss_dssp             GHHHHHHHHHHHSS--CSCHHHHHHHHHHHHHHHHSSCCCH----HHHHHHHHHHHTTSCS-CHHHHHHHH-HHHHHHTT
T ss_pred             HHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHhhChhhc----ccccHHHHHHHHhCCC-ChhHHHHHH-HHHHHHHh
Confidence            23346667888775  347889999999998663 445432    3456777888888765 777888888 88888776


Q ss_pred             CC
Q psy4703         337 AF  338 (401)
Q Consensus       337 ~~  338 (401)
                      .-
T Consensus       190 ~~  191 (591)
T 2vgl_B          190 SH  191 (591)
T ss_dssp             SC
T ss_pred             hC
Confidence            43

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=88.29  E-value=8.2  Score=37.83  Aligned_cols=101  Identities=9%  Similarity=0.104  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC---------------------CC-------------------Ccch--H
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTA---------------------EE-------------------SHER--A   47 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~---------------------p~-------------------~~~~--~   47 (401)
                      .+....|..|.+.|++++-.++.......-.                     |+                   +...  .
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667889999999999988887644322210                     11                   0111  1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~------~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      .+-..+|..|+..|+|.+|+..+.+.++-...      -...+....+.|..++++..+...|.++...
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            12336788888888888888888877764211      1455777788888888888888888887655

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=87.52  E-value=12  Score=32.30  Aligned_cols=53  Identities=19%  Similarity=0.049  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (401)
Q Consensus        47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~ka  107 (401)
                      +...+.+|   ++.|+++.|.+.++..     ++..-|.++|..-+..|+++-|..+|+++
T Consensus         8 ~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            8 PHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            44444444   5789999999988765     57888999999999999999999999876

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=87.41  E-value=0.45  Score=43.41  Aligned_cols=118  Identities=17%  Similarity=0.175  Sum_probs=83.1

Q ss_pred             HHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCC-CCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhc
Q psy4703         212 IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDAS-IRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL  290 (401)
Q Consensus       212 ~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~-~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~  290 (401)
                      ..+|++.|-++++++++.++..|...|.-|..  +++.+ ......|..-.|.+.+++     ..+.+.++.|+--|-.+
T Consensus        50 ~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~--~~~~nk~~I~~~GaI~~Lv~lL~~-----~~~~~~~e~a~~aL~nL  122 (233)
T 3tt9_A           50 QLRGILKLLQLLKVQNEDVQRAVCGALRNLVF--EDNDNKLEVAELNGVPRLLQVLKQ-----TRDLETKKQITGLLWNL  122 (233)
T ss_dssp             HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHHHHHHH-----CCCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHcCCHHHHHHHHcc-----CCCHHHHHHHHHHHHHH
Confidence            44669999999999999999888888887764  22221 111123555556665543     34678899999999999


Q ss_pred             cCCHHHHHhhcCCHHHHHHHHHHHh---cC------------CCCcchhhhhhhHHhhcccCCc
Q psy4703         291 TLDAEVKEALIEDKPALAALVDVAS---SV------------KYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       291 ~~~~~vke~~~~d~~~l~~l~~~~~---~~------------~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      |..++.|..+++  ..+..|++++.   +.            .+..+.+-+. .++-||+-.-+
T Consensus       123 S~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~-~~L~nLss~~~  183 (233)
T 3tt9_A          123 SSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVT-GCLRNMSSAGA  183 (233)
T ss_dssp             HTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHH-HHHHHHTTSCH
T ss_pred             HcChhhHHHHHh--ccHHHHHHHHhccccCCcccccccccccchHHHHHHHH-HHHHHHhcCCH
Confidence            999999999986  47888888642   11            1335667777 89999985443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=87.02  E-value=14  Score=40.48  Aligned_cols=246  Identities=12%  Similarity=0.041  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAE-------ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p-------~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~   81 (401)
                      .-++...|..+...+  .+++.++...+.-+ .       .......+-..+|.+|+..++ ++++......+.-+....
T Consensus       413 ~GAllaLGli~ag~~--~~~~~lL~~~L~~~-~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~  488 (963)
T 4ady_A          413 GGSLYGLGLIYAGFG--RDTTDYLKNIIVEN-SGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATS  488 (963)
T ss_dssp             HHHHHHHHHHTTTTT--HHHHHHHHHHHHHH-SSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHHHHHhcCCCc--HHHHHHHHHHHcCc-cccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHH
Confidence            345555565555444  47888888877655 2       011233455567777776665 567788888887553222


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCChh
Q psy4703          82 --KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI--VTKRMQENEQLQNKVHNMFKYVFDTSAPMD  157 (401)
Q Consensus        82 --kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  157 (401)
                        -|-+-+|.++...|+-+-....++.+.+ +. +..+...+......  .++.        ..+..+.+.+.. ..+.-
T Consensus       489 ~~~AalALGli~vGTgn~~ai~~LL~~~~e-~~-~e~vrR~aalgLGll~~g~~--------e~~~~li~~L~~-~~dp~  557 (963)
T 4ady_A          489 GEAAALGMGLCMLGTGKPEAIHDMFTYSQE-TQ-HGNITRGLAVGLALINYGRQ--------ELADDLITKMLA-SDESL  557 (963)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-CS-CHHHHHHHHHHHHHHTTTCG--------GGGHHHHHHHHH-CSCHH
T ss_pred             HHHHHHHHhhhhcccCCHHHHHHHHHHHhc-cC-cHHHHHHHHHHHHhhhCCCh--------HHHHHHHHHHHh-CCCHH
Confidence              3455667777777776544444444443 22 22222222111111  1111        111122222222 12222


Q ss_pred             HHHHHHHHHHH--hhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHHH-----HhcHHHHHHHHcCCChhH
Q psy4703         158 KRVTAVNNLVV--LAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSII-----KQGVDILKRLYMSKNENI  230 (401)
Q Consensus       158 ~~~~a~~~L~~--l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i~-----~~gv~~Lk~l~~s~~d~i  230 (401)
                      .|..++..+..  .|-   |-     ..++..|...+..+.+++++.+--.- .+..     +....++..+.++.++.|
T Consensus       558 vRygaa~alglAyaGT---Gn-----~~aIq~LL~~~~~d~~d~VRraAVia-LGlI~~g~~e~v~rlv~~L~~~~d~~V  628 (963)
T 4ady_A          558 LRYGGAFTIALAYAGT---GN-----NSAVKRLLHVAVSDSNDDVRRAAVIA-LGFVLLRDYTTVPRIVQLLSKSHNAHV  628 (963)
T ss_dssp             HHHHHHHHHHHHTTTS---CC-----HHHHHHHHHHHHHCSCHHHHHHHHHH-HHHHTSSSCSSHHHHTTTGGGCSCHHH
T ss_pred             HHHHHHHHHHHHhcCC---CC-----HHHHHHHHHHhccCCcHHHHHHHHHH-HHhhccCCHHHHHHHHHHHHhcCCHHH
Confidence            22222222211  010   00     11133233332212223331110000 1111     112344455666889999


Q ss_pred             HHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC
Q psy4703         231 RVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL  292 (401)
Q Consensus       231 ~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~  292 (401)
                      |..+..+|.-++++.           | ..+..+...+++-  ..|.+.|+.|+.+|+.+-.
T Consensus       629 R~gAalALGli~aGn-----------~-~~~aid~L~~L~~--D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          629 RCGTAFALGIACAGK-----------G-LQSAIDVLDPLTK--DPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             HHHHHHHHHHHTSSS-----------C-CHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhccCC-----------C-cHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHhc
Confidence            998888888777532           2 2356667777763  3477899999999998864

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=86.55  E-value=5.9  Score=38.13  Aligned_cols=173  Identities=15%  Similarity=0.066  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHhhhcchhhHHHh-hhhH-HHHHHHHhhccCchhHHhh---------H---HHHHHHHH-HhcHHHHHH
Q psy4703         157 DKRVTAVNNLVVLAREMSGAEMLL-KSGV-AKQINTLLKCETNEEIYLG---------E---EDFITSII-KQGVDILKR  221 (401)
Q Consensus       157 ~~~~~a~~~L~~l~~~~~gae~~~-~e~~-v~~L~~ll~~~~~~e~~lA---------~---e~fi~~i~-~~gv~~Lk~  221 (401)
                      ..+..++..|.-+...+......+ ..+| +..|..+++ +.++++...         +   +..-..+. .+|++.|-+
T Consensus        99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~  177 (354)
T 3nmw_A           99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  177 (354)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence            345555556665555444333333 3445 888888887 556665332         1   11223343 456888888


Q ss_pred             H-HcCCChhHHHHHHHhhhhccccCCCCCCCCCC--CCCchHHHHHHHHhhhcCCCC--CchhHHhHHhhhhhcc----C
Q psy4703         222 L-YMSKNENIRVRALVGLCKLGSMGGSDASIRPF--ADGSTRKLAEACRRFLVNPAR--DPDIRRWAAEGLAYLT----L  292 (401)
Q Consensus       222 l-~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~--~~~s~~~l~~~~~~~l~~~~~--~~~~~~~~~eglay~~----~  292 (401)
                      + .+++++.+...|+..|..|...  .+.....+  ..|..--|++..+    .++.  +.+.++.|+=-|.++|    -
T Consensus       178 lL~~~~~~~~~~~A~~aL~nLs~~--~~~nk~~i~~~~Gai~~Lv~lL~----~~~~~~~~~v~~~A~~aL~nLs~~~a~  251 (354)
T 3nmw_A          178 CALEVKKESTLKSVLSALWNLSAH--CTENKADICAVDGALAFLVGTLT----YRSQTNTLAIIESGGGILRNVSSLIAT  251 (354)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHSTTHHHHHHHHTT----CCCSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcc--ChhhhHHHHHhcCcHHHHHHHhc----cCCCcccHHHHHHHHHHHHHHHhhccC
Confidence            6 4577777766555455444321  11111111  2344433444332    2221  1146776777777777    4


Q ss_pred             CHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         293 DAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       293 ~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      .++.++.+++ ...+..|++++++. +..+.--.+ .++.||+..-+
T Consensus       252 ~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~v~~~A~-~aL~nLa~~~~  295 (354)
T 3nmw_A          252 NEDHRQILRE-NNCLQTLLQHLKSH-SLTIVSNAC-GTLWNLSARNP  295 (354)
T ss_dssp             CHHHHHHHHT-TTHHHHHHHHTTCS-CHHHHHHHH-HHHHHHTSSCH
T ss_pred             CHHHHHHHHH-cCCHHHHHHHHcCC-ChHHHHHHH-HHHHHHhCCCH
Confidence            8999977764 56799999999987 566777778 89999995444

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=86.36  E-value=18  Score=32.44  Aligned_cols=177  Identities=12%  Similarity=0.025  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhhCCCCccHHHHHH
Q psy4703          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY----TDAKHIHRVEPTNKAIQPVLS  122 (401)
Q Consensus        47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~----~~~~kal~l~P~~~~~~~~L~  122 (401)
                      ......-+.++...+. ..++....+.+. + .++.....-+.++..+|....++    ..+...+.-++ ++.+.....
T Consensus        37 ~~vr~~A~~~L~~~~~-~~~~~~L~~~l~-d-~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~-~~~vr~~a~  112 (280)
T 1oyz_A           37 SLKRISSARVLQLRGG-QDAVRLAIEFCS-D-KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDK-SACVRATAI  112 (280)
T ss_dssp             HHHHHHHHHHHHHHCC-HHHHHHHHHHHT-C-SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCS-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCC-chHHHHHHHHHc-C-CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC-CHHHHHHHH
Confidence            3444444444445554 456666666654 3 34444444455566666432222    22322222233 344443333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHh
Q psy4703         123 RLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYL  202 (401)
Q Consensus       123 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~l  202 (401)
                      .....++...   ......+...+..++. +++...+..++..|...+.+          ..+..+..+++ +.++.+..
T Consensus       113 ~aL~~l~~~~---~~~~~~~~~~L~~~l~-d~~~~vR~~a~~aL~~~~~~----------~~~~~L~~~l~-d~~~~vr~  177 (280)
T 1oyz_A          113 ESTAQRCKKN---PIYSPKIVEQSQITAF-DKSTNVRRATAFAISVINDK----------ATIPLLINLLK-DPNGDVRN  177 (280)
T ss_dssp             HHHHHHHHHC---GGGHHHHHHHHHHHTT-CSCHHHHHHHHHHHHTC-------------CCHHHHHHHHT-CSSHHHHH
T ss_pred             HHHHHHhccC---CcccHHHHHHHHHHhh-CCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHc-CCCHHHHH
Confidence            3332222100   0000112222222222 34455555666555554432          13444555555 44444422


Q ss_pred             hHHHHHHHH---HHhcHHHHHHHHcCCChhHHHHHHHhhhhcc
Q psy4703         203 GEEDFITSI---IKQGVDILKRLYMSKNENIRVRALVGLCKLG  242 (401)
Q Consensus       203 A~e~fi~~i---~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~  242 (401)
                      +.-..+..+   ....++.|..+++.++..++..|+..|..++
T Consensus       178 ~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          178 WAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence            222222122   1233455556666666667766666666665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.28  E-value=4.5  Score=42.24  Aligned_cols=81  Identities=20%  Similarity=0.183  Sum_probs=57.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhCCCCHHHHHHH
Q psy4703          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS--------LEIVPDDPKALFRR   87 (401)
Q Consensus        16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA--------L~ldP~~~kA~~~~   87 (401)
                      ...+...|++++|.+...   .++      ....|.++|..+++.++++.|+.+|.++        |.....+.+.+..+
T Consensus       659 f~~~l~~~~~~~A~~~~~---~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~  729 (814)
T 3mkq_A          659 FELALKVGQLTLARDLLT---DES------AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTL  729 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHT---TCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             eehhhhcCCHHHHHHHHH---hhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHH
Confidence            455677888888877643   333      6778889999999999999999988875        22234566666677


Q ss_pred             HHHHHHcCCHHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAK  105 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~  105 (401)
                      +......|+++.|...|.
T Consensus       730 ~~~a~~~~~~~~A~~~~~  747 (814)
T 3mkq_A          730 AKDAETTGKFNLAFNAYW  747 (814)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCchHHHHHHHH
Confidence            766666666666665543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.77  E-value=1.7  Score=44.24  Aligned_cols=72  Identities=15%  Similarity=0.104  Sum_probs=61.2

Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (401)
Q Consensus        44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-------~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~  116 (401)
                      ...+.++..+=..|+..+.|++|....+++.  .|..       ...+|..|.++.-.++|.+|..++..|+...|.+..
T Consensus       228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~  305 (523)
T 4b4t_S          228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK  305 (523)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred             chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence            3577888888999999999999999999984  3322       566888999999999999999999999999987654


Q ss_pred             H
Q psy4703         117 I  117 (401)
Q Consensus       117 ~  117 (401)
                      +
T Consensus       306 a  306 (523)
T 4b4t_S          306 S  306 (523)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=82.08  E-value=17  Score=40.17  Aligned_cols=94  Identities=5%  Similarity=-0.119  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh-----hcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Q psy4703          11 KLKESGNSAFKQGDYETALDFYTKALK-----VTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKAL   84 (401)
Q Consensus        11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~-----l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-P~~~kA~   84 (401)
                      .|...-+.+.+.|+.++|...|.+..+     .. |    +...|.-+-..|.+.|++++|...|++..+.. .-|...|
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~-P----dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-L----TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT-C----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC-C----CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            466777889999999999999977543     23 5    57889999999999999999999999987753 2367788


Q ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHHh
Q psy4703          85 FRRCQAYEAIGKF-EEAYTDAKHIHR  109 (401)
Q Consensus        85 ~~~a~a~~~lg~~-eeA~~~~~kal~  109 (401)
                      ..+-.++.+.|+. ++|...|++..+
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            8888899999985 778888776654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=81.51  E-value=6.5  Score=39.33  Aligned_cols=178  Identities=17%  Similarity=0.107  Sum_probs=105.4

Q ss_pred             CCChhHHHHHHHHHHHhhhc-c-hhhHHHhhhhHHHHHHHHhhccCchhHHhh----H-------HHHHHHH--HHhcHH
Q psy4703         153 SAPMDKRVTAVNNLVVLARE-M-SGAEMLLKSGVAKQINTLLKCETNEEIYLG----E-------EDFITSI--IKQGVD  217 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~-~-~gae~~~~e~~v~~L~~ll~~~~~~e~~lA----~-------e~fi~~i--~~~gv~  217 (401)
                      ..+.+.+..+...|..+... + .....+...|++..|.+++..+.++++...    .       ++--..|  ...|++
T Consensus       254 s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~  333 (458)
T 3nmz_A          254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA  333 (458)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHH
Confidence            44556666666665554432 2 233455456889999987541445555321    1       1111233  346799


Q ss_pred             HHHHHHcCCCh----hHHHHHHHhhhhcccc-CCCCCCCCCCC-CCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhcc
Q psy4703         218 ILKRLYMSKNE----NIRVRALVGLCKLGSM-GGSDASIRPFA-DGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT  291 (401)
Q Consensus       218 ~Lk~l~~s~~d----~i~~ralvgLckl~~~-gg~d~~~~~~~-~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~  291 (401)
                      .|-+++.+.++    ++...|...|..+... .+.+.....+. .|-.-.|.+    +|.  ..+.+.++.|+--|+-++
T Consensus       334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~----LL~--~~~~~v~~~A~~aL~nLa  407 (458)
T 3nmz_A          334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ----HLK--SHSLTIVSNACGTLWNLS  407 (458)
T ss_dssp             HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH----HSS--CSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH----HHc--CCChHHHHHHHHHHHHHH
Confidence            99999986554    3665555555555431 01111111111 122222222    222  235678899999999888


Q ss_pred             -CCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         292 -LDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       292 -~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                       -+++.+..++ +...+..|++++++. +..+.-..+ .++.||+..-|
T Consensus       408 ~~~~~~~~~i~-~~G~I~~Lv~LL~s~-~~~v~~~Aa-~AL~nL~~~~p  453 (458)
T 3nmz_A          408 ARNPKDQEALW-DMGAVSMLKNLIHSK-HKMIAMGSA-AALRNLMANRP  453 (458)
T ss_dssp             SSCHHHHHHHH-HHTHHHHHHTTTTCS-SHHHHHHHH-HHHHHHHTCCS
T ss_pred             cCCHHHHHHHH-HCCCHHHHHHHHhCC-CHHHHHHHH-HHHHHHHcCCH
Confidence             4899998876 467899999999877 666777777 89999997766

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=80.19  E-value=6.1  Score=30.25  Aligned_cols=52  Identities=21%  Similarity=0.317  Sum_probs=37.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK   59 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k   59 (401)
                      +.+..+...|..+++.++|.+|+.+|+++..+. .+......+-+.++.|--+
T Consensus        51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t-en~~i~ki~~fyl~ec~kk  102 (106)
T 2vkj_A           51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS-DNEEIKKIASFYLEECRKK  102 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc-cCHHHHHHHHHHHHHHHHH
Confidence            567888999999999999999999999998776 4422222333556666443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	401
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	9e-11
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-10
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-09
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-09
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-08
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	3e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-08
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-04
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	3e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	8e-06
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-05
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	3e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.002

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 58.0 bits (139), Expect = 9e-11
 Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 14/149 (9%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKA-----------LKVTAEESHERATCLKNRAAVYL 58
             +KE G   FK G Y  A+  Y K             K +            N A  YL
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75

Query: 59  KQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           K  +  K +E C K+L +   + K L+RR +A   + +FE A  D + +  V P NKA +
Sbjct: 76  KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135

Query: 119 PVLSRLFAIVTKRMQENEQLQNKVHNMFK 147
             +        K  + NE+ +    NMFK
Sbjct: 136 LQIFMCQK---KAKEHNERDRRTYANMFK 161

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-10
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           D  +    +LK   N  FK  DYE A+ FY++      E +   A    NR+  YL+   
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQ----AIELNPSNAIYYGNRSLAYLRTEC 59

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122
               + D ++++E+     K  +RR  +  A+GKF  A  D + + +V+P +K  +    
Sbjct: 60  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 119

Query: 123 RLFAIVTKRMQEN 135
               IV ++  E 
Sbjct: 120 ECNKIVKQKAFER 132

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            +LKE GN  F    Y  A   Y +A+      +   A    NRA  YLK  Q ++ + D
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
           C ++LE+     KA F   Q    +  ++EA  + +  + +    +
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 4e-10
 Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
            E  +  ++ GD+E A     +  +    +  +    L   ++++ +  + D+     +
Sbjct: 2  PMELAHREYQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFST 57

Query: 72 KSLEIVPDDPKALFRRCQAY 91
           +++  P   +A       Y
Sbjct: 58 LAIKQNPLLAEAYSNLGNVY 77

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 30/144 (20%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVT--------------------- 39
            +  + N            ++QG  + A+D Y +A+++                      
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288

Query: 40  -AEESHERA--------TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90
            AE+ +  A          L N A +  +Q   ++ +    K+LE+ P+   A       
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

Query: 91  YEAIGKFEEAYTDAKHIHRVEPTN 114
            +  GK +EA    K   R+ PT 
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 4e-09
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
            +       + L    N   +QG+ E A+  Y KAL+V      E A    N A+V  +Q
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQ 352

Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG 95
            +  + +    +++ I P    A        + + 
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 5e-09
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 4/124 (3%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +  + N  +     GN   +   ++ A+  Y +        S   A    N A VY +Q 
Sbjct: 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR----ALSLSPNHAVVHGNLACVYYEQG 251

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121
             D  I+   +++E+ P  P A      A +  G   EA        R+ PT+      L
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 122 SRLF 125
           + + 
Sbjct: 312 ANIK 315

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 8/99 (8%), Positives = 26/99 (26%)

Query: 50  LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109
               A    +    +     C +     PD+   L      +    + + +   +    +
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY 148
             P        L  ++    +  +  E  ++ +     +
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 10/65 (15%), Positives = 18/65 (27%)

Query: 45  ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA 104
             A    N   V+  Q +    I    K++ + P+   A        +    F+ A    
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 105 KHIHR 109
                
Sbjct: 227 LRALS 231

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 4e-09
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
            L   G  A  + D++ ALD ++      +           N   +Y       +  +  
Sbjct: 7   SLWNEGVLAADKKDWKGALDAFSAVQDPHSR-------ICFNIGCMYTILKNMTEAEKAF 59

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
           ++S+        A F+R   Y    K++ A  D K        N+ I
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 106

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           K KE GN A+K+ D++TAL  Y KA     E      T + N+AAVY ++   +K  E C
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKA----KELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 71  SKSLEIVPDDP-------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
            K++E+  ++        KA  R   +Y    K+++A            T   ++
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 7e-09
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           N+LKE GN A   G+ + AL  Y++A+K+        +      A     Q   +   + 
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126
                ++ PD  K   R+  A E + +FEEA    +   + E  N  ++  L  + A
Sbjct: 64  V----DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 51.5 bits (122), Expect = 1e-08
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALK------------VTAEESHERATCL 50
           +  +     +KE GN  FK+ +   A+  Y +AL             +  ++ +   +C 
Sbjct: 11  EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 70

Query: 51  KNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110
            N A  Y K     K I+  SK L+I  ++ KAL++   A    G  EEA  +      +
Sbjct: 71  LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130

Query: 111 EPTNKAIQPVLSRL 124
            P N  I+      
Sbjct: 131 NPNNLDIRNSYELC 144

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 12/144 (8%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKA------------LKVTAEESHERATC 49
           +D  +     LK  GN+ FK  ++E A+  YTK                 A+      +C
Sbjct: 20  VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSC 79

Query: 50  LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109
           + N  A  LK +     ++ C ++LEI P + KAL+RR Q ++ + ++++A  D K    
Sbjct: 80  VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139

Query: 110 VEPTNKAIQPVLSRLFAIVTKRMQ 133
           + P +KAIQ  L ++   +  +  
Sbjct: 140 IAPEDKAIQAELLKVKQKIKAQKD 163

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 4e-08
 Identities = 11/99 (11%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
            + ++    K  + G  + KQ      +   + +     +       CL +   +   +N
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH------CLVHLGDIARYRN 166

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           Q  +       + ++VP + +   +      + G     
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 14/149 (9%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEES-----------HERATCLKNRAAVYL 58
             +KE G   FK+G Y+ AL  Y K +     ES             R     N A  +L
Sbjct: 14  TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 73

Query: 59  KQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           K       IE C+K+LE+  ++ K L RR +A+ A+  FE A  D + + ++ P NKA +
Sbjct: 74  KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133

Query: 119 PVLSRLFAIVTKRMQENEQLQNKVHNMFK 147
             L+       +  ++  + +    NMF+
Sbjct: 134 TQLAVCQQ---RIRRQLAREKKLYANMFE 159

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 4/145 (2%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           +N + D+ +  E G    ++GD   A+  +  A++    +  +     +       +  Q
Sbjct: 13  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAENEQ 68

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122
               I    + LE+ PD+  AL     ++       +A    +   R  P    +     
Sbjct: 69  ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 128

Query: 123 RLFAIVTKRMQENEQLQNKVHNMFK 147
                      +         ++F 
Sbjct: 129 EGAGGAGLGPSKRILGSLLSDSLFL 153

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 4/140 (2%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +D    D +     G      G+Y    D                        A     N
Sbjct: 165 LDPTSIDPDVQCGLGVLFNLSGEY----DKAVDCFTAALSVRPNDYLLWNKLGATLANGN 220

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121
           Q+++ +    ++LE+ P   ++ +    +   +G   EA         ++  ++  +   
Sbjct: 221 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280

Query: 122 SRLFAIVTKRMQENEQLQNK 141
             +   +   ++    +  +
Sbjct: 281 GAMSENIWSTLRLALSMLGQ 300

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.1 bits (114), Expect = 5e-07
 Identities = 15/123 (12%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
             +A  +G  + AL+   +A+    + S + A+   +   +       ++  E   +S++
Sbjct: 3   WKNALSEGQLQQALELLIEAI----KASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN 135
           + P+      +     +A    ++    A     +    +  + ++S   ++V++  ++ 
Sbjct: 59  LFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQV 118

Query: 136 EQL 138
            +L
Sbjct: 119 SEL 121

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 13/87 (14%), Positives = 24/87 (27%)

Query: 57  YLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
            L + Q  + +E   ++++  P D        +     G FE A        ++ P    
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 117 IQPVLSRLFAIVTKRMQENEQLQNKVH 143
               L  L      R    +       
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAKV 92

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 14 ESGNSAFKQGDYETALDFYTKALK---VTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
          E G  A+ + DY     +  +AL+        + ++ + L   +    +Q   DK +   
Sbjct: 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69

Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGK 96
           K LE+ P+  +A          + K
Sbjct: 70 KKLLELDPEHQRANGNLKYFEYIMAK 95

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (103), Expect = 8e-06
 Identities = 25/126 (19%), Positives = 37/126 (29%)

Query: 25  YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84
            E  L    + L   A    ERA  L  R  +Y           D S++L I PD P+  
Sbjct: 15  QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF 74

Query: 85  FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHN 144
                     G F+ AY     +  ++PT                +     + L     +
Sbjct: 75  NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134

Query: 145 MFKYVF 150
                F
Sbjct: 135 DPNDPF 140

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAE--------ESHERATCLKNRAAVYLKQNQN 63
                      G+Y+ A     +A++++           +   A C    A         
Sbjct: 12  ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF 71

Query: 64  DKVIEDCSKSLEIVPDDPKA-----------LFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
           D+ +    K+L       +            ++ R  A + +G+  EA  + K +  +  
Sbjct: 72  DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131

Query: 113 TNKAIQPVLSRLFAIVTKRMQ 133
             K   P   R+  +   R+ 
Sbjct: 132 ERKGETPGKERMMEVAIDRIA 152

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 18/107 (16%)

Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESH------------------ERATCLKNR 53
            K +G  A   G +E A    + AL+                         ++      +
Sbjct: 14  EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAK 73

Query: 54  AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           A   +   +   VI +        P       +   AY    +  +A
Sbjct: 74  AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 120

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 12/134 (8%), Positives = 33/134 (24%), Gaps = 4/134 (2%)

Query: 19  AFKQGDYETALDFYTKALKVTAEESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI- 76
           A   G+ + A      AL+         R         V   + +  + +    ++ ++ 
Sbjct: 22  AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 81

Query: 77  --VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE 134
                   AL+   Q  E +       T  +   +              +   + +   +
Sbjct: 82  RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 141

Query: 135 NEQLQNKVHNMFKY 148
                 ++      
Sbjct: 142 LLWAWARLDEAEAS 155

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 52  NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEAYTDAKHIHRV 110
              AV  +  ++++  +    ++E+   +      R    +++ K   E       I   
Sbjct: 48  YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 107

Query: 111 EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF 150
           +P N  +      L   +    QE E + + ++   K   
Sbjct: 108 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	401
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.85
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.84
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.82
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.81
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.79
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.72
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.65
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.64
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.63
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.59
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.59
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.57
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.57
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.55
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.52
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.52
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.51
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.38
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.34
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.24
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.23
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.23
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.17
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.11
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.1
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.06
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.06
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.03
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.02
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.95
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.89
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.85
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.76
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.67
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.6
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.58
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.48
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.47
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.4
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.33
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.12
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.11
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.72
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.67
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.59
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.1
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	94.43
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	92.66
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	91.88
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	91.73
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	91.26
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.66
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	89.89
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	86.19
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	83.89
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.84
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	80.98
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	80.28

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.85  E-value=3.7e-20  Score=161.35  Aligned_cols=143  Identities=27%  Similarity=0.347  Sum_probs=125.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~------------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA   73 (401)
                      ...++.+++.|+.+|+.|+|.+|+.+|++|+... |.            .+....+|.|+|.||+++|+|++|+.+|+++
T Consensus        12 ~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            3568899999999999999999999999999876 32            2346678999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (401)
Q Consensus        74 L~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (401)
                      |.++|+++++|+++|.+|..+|+|++|+.+|+++++++|+|+.+...++.+...+.+..+..+   +.+..||+++.+.
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k---k~~~~~f~~~~~~  166 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR---RTYANMFKKFAEQ  166 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTT
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHhhhhhc
Confidence            999999999999999999999999999999999999999999999999999888776655444   4456777776653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.4e-20  Score=152.10  Aligned_cols=115  Identities=31%  Similarity=0.448  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      .++.++++|+.++..|+|++|+.+|+++|+++ |+   ++.+|.++|.||+++|+|++|+.+|+++++++|+++.+|+++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~   77 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK   77 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cc---chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHH
Confidence            56789999999999999999999999999999 77   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~  126 (401)
                      |.++..+|+|++|+.+|+++++++|+++.+...++++..
T Consensus        78 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          78 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999999999999999999887753

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8e-20  Score=159.71  Aligned_cols=140  Identities=29%  Similarity=0.374  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE   75 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~------------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~   75 (401)
                      .+..+++.|+.+|+.|+|++|+..|++||+.. |.            ......+|.|+|.||+++|+|++|+.+|+++|+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            48889999999999999999999999999998 53            134567899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        76 ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ++|+++.+++++|.+|..+|+|++|+.+|+++++++|+|+.+...+..+...+.+......   .....||+.+.+
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~---~~~~~~f~~~~~  163 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK---KLYANMFERLAE  163 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999888777665444   334566666543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.82  E-value=1.6e-19  Score=155.08  Aligned_cols=124  Identities=26%  Similarity=0.311  Sum_probs=112.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-------------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA   73 (401)
                      +.+..+++.|+.+|+.|+|.+|+..|++|+... |.             .+....+|.|+|.||+++|+|++|+.+|+++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            457789999999999999999999999999987 43             1234568999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        74 L~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      |+++|.++++|+++|.+|..+|+|++|+.+|+++++++|+|..+...+..+...+.+.
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988887766543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.1e-19  Score=152.19  Aligned_cols=120  Identities=28%  Similarity=0.462  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      +.++.++.+||.+++.|+|++|+.+|+++++++ |+   +..+|.++|.||+.+|++++|+.+|+++|+++|+++.+|++
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~   83 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-PS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccc-hh---hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH
Confidence            568899999999999999999999999999999 77   99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~  130 (401)
                      +|.++..+|+|++|+.+|++++.++|+++.++..+.++....++
T Consensus        84 ~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          84 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888877665544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.8e-19  Score=156.60  Aligned_cols=106  Identities=26%  Similarity=0.371  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      +++.+++.|+.+++.|+|++|+.+|++||+++ |.   ++.+|.++|.||+++|+|++|+.+|++||+++|+++.+|+++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~---~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l   78 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   78 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence            57889999999999999999999999999999 77   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~  117 (401)
                      |.+|..+|+|++|+.+|+++++++|++...
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            999999999999999999999999976543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=1.8e-18  Score=150.25  Aligned_cols=127  Identities=30%  Similarity=0.500  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-------------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA   73 (401)
                      ..++.++..|+.++..|+|.+|+..|+++|+.. +.             .+....++.|+|.||+++|+|++|+.+|++|
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  103 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-hhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhh
Confidence            346678899999999999999999999999765 21             2568889999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (401)
Q Consensus        74 L~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a  134 (401)
                      |+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|+|+.+...+..+...++...+.
T Consensus       104 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888777665443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=4.2e-16  Score=141.77  Aligned_cols=120  Identities=17%  Similarity=0.051  Sum_probs=111.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      ++..+..++.+|..++..|+|++|+..|+++++++ |+   ++.+|+++|.+|.++|++++|+.+|+++++++|+++.++
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  108 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH  108 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CC---CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhH
Confidence            56788999999999999999999999999999999 77   899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      +++|.+|..+|++++|+..|+++++++|++......+.......
T Consensus       109 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_         109 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999987766665444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.9e-17  Score=133.15  Aligned_cols=115  Identities=28%  Similarity=0.349  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-----   81 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~-----   81 (401)
                      +.+..+++.|+.++..|+|++|+.+|+++|+++ |+   +..++.++|.||+++|+|++|+.+|+++|+++|.+.     
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~   77 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD-PT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH
Confidence            457889999999999999999999999999999 76   899999999999999999999999999999998774     


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703          82 --KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (401)
Q Consensus        82 --kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~  126 (401)
                        .+|+++|.++..+++|++|+.+|++++..+|+ +.+...+..+..
T Consensus        78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k  123 (128)
T d1elra_          78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEK  123 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence              57888899999999999999999999999875 455555544433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.9e-15  Score=144.09  Aligned_cols=158  Identities=8%  Similarity=-0.047  Sum_probs=137.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDD   80 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~ldP~~   80 (401)
                      |..+|+.++++...|..+.+.+.+++|+..|++||+++ |+   +..+|++||.++..+| ++++|+.+++++++++|++
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~---~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~  111 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN  111 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CC---ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh
Confidence            56689999999999999999999999999999999999 77   9999999999999987 5999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (401)
                      ..+|+++|.++..+|++++|+.+|+++++++|++..++..++.++..++....+        .++|+.++. .|.+....
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~A--------l~~~~~al~~~p~n~~a~  183 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE--------LQYVDQLLKEDVRNNSVW  183 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH--------HHHHHHHHHHCTTCHHHH
T ss_pred             hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHH--------HHHHHHHHHHCCccHHHH
Confidence            999999999999999999999999999999999999999999999988877544        346777777 45555544


Q ss_pred             HHHHHHHHHhhh
Q psy4703         160 VTAVNNLVVLAR  171 (401)
Q Consensus       160 ~~a~~~L~~l~~  171 (401)
                      ..+...+...++
T Consensus       184 ~~r~~~l~~~~~  195 (315)
T d2h6fa1         184 NQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHccc
Confidence            444444443333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.3e-15  Score=131.73  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      .+..++++|..++..|+|++|++.|+++   . |.   ++.+|+|+|.+|+.+|+|++|+.+|++||+++|+++.+|+++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~-~~---~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~   76 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---Q-DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR   76 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---S-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---C-CC---CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHH
Confidence            3557789999999999999999999863   4 33   567899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCc----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNK----------------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~----------------~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      |.+|..+|+|++|+.+|++++...|.+.                ++...++.++..+++..++        .++|..+..
T Consensus        77 g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A--------~~~l~~A~~  148 (192)
T d1hh8a_          77 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA--------EEQLALATS  148 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH--------HHHHHHHHT
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHH--------HHHHHHHHh
Confidence            9999999999999999999999877654                2344566666666665443        346777776

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.9e-16  Score=146.80  Aligned_cols=150  Identities=9%  Similarity=0.030  Sum_probs=128.4

Q ss_pred             CccCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy4703           1 MIDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD   79 (401)
Q Consensus         1 ~i~~~p~~a~~l~~~Gn~~~~~g-~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~   79 (401)
                      +|+.+|++..+|..+|..+...| ++++|+.+|+++++++ |+   +..+|.++|.++..+|++++|+.+++++++++|+
T Consensus        69 ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~---~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~  144 (315)
T d2h6fa1          69 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PK---NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK  144 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-Hh---hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc
Confidence            36789999999999999999977 5999999999999999 77   9999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Q psy4703          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM  156 (401)
Q Consensus        80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~  156 (401)
                      +..+|+++|.++..+|+|++|+.+|+++++++|++..++..++.+....+...... .. ..+...+..++. .|.+.
T Consensus       145 n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~-~~-~~ai~~~~~al~~~P~~~  220 (315)
T d2h6fa1         145 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA-VL-EREVQYTLEMIKLVPHNE  220 (315)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH-HH-HHHHHHHHHHHHHSTTCH
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh-hh-HHhHHHHHHHHHhCCCch
Confidence            99999999999999999999999999999999999999999888766544321111 11 233445666666 44443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.1e-14  Score=137.14  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (401)
Q Consensus         7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~   86 (401)
                      ..+..+...|..++..|++++|+..|+++++++ |+   ++.++.++|.+|..+|++.+|+..+++++...|.+..+++.
T Consensus       235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  310 (388)
T d1w3ba_         235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PH---FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN  310 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SS---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhH
Confidence            334444444444444555555555555555444 33   44444455555555555555555555555555555555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      +|.++..+|++++|+..|+++++++|++..++..++.++...++.
T Consensus       311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  355 (388)
T d1w3ba_         311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL  355 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            555555555555555555555555555554444454444444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.4e-15  Score=123.20  Aligned_cols=113  Identities=11%  Similarity=0.035  Sum_probs=101.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q psy4703          13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK---QNQNDKVIEDCSKSLEIVPDD--PKALFRR   87 (401)
Q Consensus        13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k---lg~y~~Ai~~~~kAL~ldP~~--~kA~~~~   87 (401)
                      -+.+|.++..+++++|.+.|++++.++ |+   ++.+++|+|.|+++   .+++++|+..|++++..+|.+  +.+++++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~---~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~L   78 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL   78 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence            356889999999999999999999999 76   89999999999987   456678999999999999865  5589999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~  129 (401)
                      |.+|..+|+|++|+.+|+++++++|++..+...++.+...+.
T Consensus        79 g~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999988877665543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.4e-14  Score=134.66  Aligned_cols=126  Identities=13%  Similarity=0.086  Sum_probs=77.8

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      .+|+.+..+...|..+...|++++|+..+.++++++ |+   +..++.++|.++...|+|++|+..+++++.++|.++..
T Consensus       164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  239 (388)
T d1w3ba_         164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN---FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV  239 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cc---cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH
Confidence            345555666666666666666666666666666666 44   55566666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHH
Q psy4703          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ  133 (401)
Q Consensus        84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~  133 (401)
                      ++.+|.++...|++++|+..|+++++++|+++.++..++.++...++..+
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  289 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE  289 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            66666666666666666666666666666666666666666555555433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.2e-14  Score=130.89  Aligned_cols=159  Identities=15%  Similarity=0.148  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      +....+++|..++..|+|++|+..|+++++.+ |+   ++.+|.++|.+|..+|++++|+.+|.++++++|+++.+++.+
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   93 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL   93 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccc
Confidence            44456789999999999999999999999999 76   888999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC-------------------------------------------------C--cc
Q psy4703          88 CQAYEAIGKFEEAYTDAKHIHRVEPT-------------------------------------------------N--KA  116 (401)
Q Consensus        88 a~a~~~lg~~eeA~~~~~kal~l~P~-------------------------------------------------~--~~  116 (401)
                      |.+|..+|++++|+..+++++.++|.                                                 +  +.
T Consensus        94 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~  173 (323)
T d1fcha_          94 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD  173 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred             cccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccc
Confidence            99999999999888887776655443                                                 2  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhhhcchhhHH
Q psy4703         117 IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEM  178 (401)
Q Consensus       117 ~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~gae~  178 (401)
                      ++..++.++...++..++..        +|+.++. .|.........+..+..+++.+.+.+.
T Consensus       174 ~~~~l~~~~~~~~~~~~A~~--------~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  228 (323)
T d1fcha_         174 VQCGLGVLFNLSGEYDKAVD--------CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA  228 (323)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cchhhHHHHHHHHHHhhhhc--------ccccccccccccccchhhhhhcccccccchhHHHH
Confidence            45677778777777654433        5666666 566666677777778888877655433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.55  E-value=2e-14  Score=116.18  Aligned_cols=95  Identities=12%  Similarity=0.054  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (401)
Q Consensus        10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~   89 (401)
                      ...+..|..+++.|++++|+..|++++..+ |+   ++.+|.++|.+|.++|++++|+.+++++++++|+++.+++.+|.
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~   92 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   92 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccc-cc---cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHH
Confidence            445789999999999999999999999999 76   89999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q psy4703          90 AYEAIGKFEEAYTDAKHIH  108 (401)
Q Consensus        90 a~~~lg~~eeA~~~~~kal  108 (401)
                      +|..+|++++|++.+++.|
T Consensus        93 ~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          93 SHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999876

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.55  E-value=1e-14  Score=124.66  Aligned_cols=112  Identities=17%  Similarity=0.196  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc---------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH---------ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP-   78 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~---------~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP-   78 (401)
                      +..++..|+.++..|+|++|+..|+++|++. |+.+         ..+.+|.|+|.||.++|+|++|+.+|+++|.+.| 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~-~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-hhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            4445566999999999999999999999998 5422         2467899999999999999999999999998754 


Q ss_pred             ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          79 ----------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        79 ----------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                                ....+++++|.+|..+|++++|+.+|++++++.|.........
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~  140 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK  140 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHH
Confidence                      2356899999999999999999999999999987654443333

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.8e-13  Score=128.11  Aligned_cols=104  Identities=13%  Similarity=0.043  Sum_probs=87.9

Q ss_pred             HHHHHHhhcCCCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4703          31 FYTKALKVTAEESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (401)
Q Consensus        31 ~y~~Al~l~~p~~~-~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~  109 (401)
                      .|+++.... ++++ ......+++|..+++.|+|++|+..|+++|+.+|+++.+|+.+|.++..+|++++|+..|+++++
T Consensus         3 ~~~~~~~~~-~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~   81 (323)
T d1fcha_           3 TYDKGYQFE-EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE   81 (323)
T ss_dssp             HHHCCCCCC-SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHhHhhc-ccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc
Confidence            355666665 3322 23344578999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCccHHHHHHHHHHHHHHHHHHH
Q psy4703         110 VEPTNKAIQPVLSRLFAIVTKRMQEN  135 (401)
Q Consensus       110 l~P~~~~~~~~L~~l~~~~~~~~~a~  135 (401)
                      ++|++...+..++.++...++...+.
T Consensus        82 ~~p~~~~~~~~la~~~~~~~~~~~A~  107 (323)
T d1fcha_          82 LKPDNQTALMALAVSFTNESLQRQAC  107 (323)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccccccccccccccccccccccccc
Confidence            99999999999988887766555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.4e-13  Score=121.89  Aligned_cols=106  Identities=12%  Similarity=0.125  Sum_probs=98.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----   80 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~----   80 (401)
                      .+.++..+++.|..++..|+|++|+.+|++||+++ |+   ++.+|+++|.||.++|+|++|+.+|++|+...|.+    
T Consensus        32 ~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~---~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~  107 (192)
T d1hh8a_          32 QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID  107 (192)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE
T ss_pred             CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hh---hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHH
Confidence            44567889999999999999999999999999999 77   89999999999999999999999999999876543    


Q ss_pred             ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703          81 ------------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (401)
Q Consensus        81 ------------~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~  114 (401)
                                  ..+++++|.++..+|++++|++.+++++.+.|+.
T Consensus       108 ~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         108 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                        4789999999999999999999999999999874

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.52  E-value=3.9e-14  Score=119.93  Aligned_cols=110  Identities=16%  Similarity=0.083  Sum_probs=97.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703          18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ----------NQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus        18 ~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl----------g~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      .+-+.+.|++|+..|+++++++ |+   ++.+++++|.++..+          +.+++|+..|++||+++|+++.+|+++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~-P~---~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSN-PL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhC-Cc---chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            4556778999999999999999 77   999999999999854          556899999999999999999999999


Q ss_pred             HHHHHHcCC-----------HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703          88 CQAYEAIGK-----------FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (401)
Q Consensus        88 a~a~~~lg~-----------~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~  131 (401)
                      |.+|..+|+           |++|+.+|+++++++|++...+..|+......+..
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            999988764           79999999999999999999999888877665444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.6e-13  Score=124.26  Aligned_cols=127  Identities=18%  Similarity=0.167  Sum_probs=109.2

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy4703          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY  101 (401)
Q Consensus        22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~  101 (401)
                      .++++.|+..+++++.......+..+.+++++|.+|+++|+|++|+.+|+++|+++|+++.+|+++|.+|..+|++++|+
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence            34577889999999876522335688999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Q psy4703         102 TDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM  156 (401)
Q Consensus       102 ~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~  156 (401)
                      .+|+++++++|++..++..++.++..+++...+..        +|+.++. .|.+.
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~--------~~~~al~~~p~~~  139 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD--------DLLAFYQDDPNDP  139 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTCH
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHH--------HHHHHHhhccccH
Confidence            99999999999999999999999988887755444        6677766 44433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-12  Score=105.97  Aligned_cols=107  Identities=14%  Similarity=0.189  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (401)
Q Consensus        47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~  126 (401)
                      ..-+...|..+++.|+|++|+..|+++|+++|.++.+|+.+|.+|..+|+|++|+.+|+++++++|+++.++..++.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            33467899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHH
Q psy4703         127 IVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVT  161 (401)
Q Consensus       127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (401)
                      .+++..++..        +|+.++...++......
T Consensus        83 ~~~~~~~A~~--------~~~~a~~~~p~~~~~~~  109 (117)
T d1elwa_          83 FLNRFEEAKR--------TYEEGLKHEANNPQLKE  109 (117)
T ss_dssp             HTTCHHHHHH--------HHHHHHTTCTTCHHHHH
T ss_pred             HccCHHHHHH--------HHHHHHHhCCCCHHHHH
Confidence            9998865544        78888884444443333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2e-12  Score=106.61  Aligned_cols=107  Identities=12%  Similarity=0.172  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      .+..+.++|.+|+..|+|++|+.+|+++|+++|+++.+++++|.+|..+|+|++|+.+|+++++++|++...+..+++++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy4703         126 AIVTKRMQENEQLQNKVHNMFKYVFDTS  153 (401)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~  153 (401)
                      ..++........+ ..+..+|..++...
T Consensus        83 ~~lg~~~~~~~~~-~~A~~~~~kal~~~  109 (128)
T d1elra_          83 ARIGNSYFKEEKY-KDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCH-HHHHHHHHHHHhcC
Confidence            8888776665544 34445677776533

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.1e-12  Score=106.23  Aligned_cols=106  Identities=19%  Similarity=0.137  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      .+..+...|..|++.|+|++|+.+|+++++++|+++.+|+++|.+|+.+|++++|+.+|+++++++|++..++..++.++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703         126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (401)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (401)
                      ..+++...+..        +|+.+.. .|.+.+..
T Consensus        89 ~~~g~~~eA~~--------~~~~a~~~~p~~~~~~  115 (159)
T d1a17a_          89 MALGKFRAALR--------DYETVVKVKPHDKDAK  115 (159)
T ss_dssp             HHTTCHHHHHH--------HHHHHHHHSTTCHHHH
T ss_pred             HHcCCHHHHHH--------HHHHHHHcCCCCHHHH
Confidence            99998865544        6777776 44444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.37  E-value=4.6e-12  Score=101.91  Aligned_cols=89  Identities=11%  Similarity=-0.009  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      ..++++|.++++.|++++|+..+++++..+|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++..++.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy4703         128 VTKRMQENE  136 (401)
Q Consensus       128 ~~~~~~a~~  136 (401)
                      .++..++..
T Consensus        97 ~g~~~~A~~  105 (112)
T d1hxia_          97 EHNANAALA  105 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             CCCHHHHHH
Confidence            999876655

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.3e-12  Score=99.89  Aligned_cols=86  Identities=20%  Similarity=0.184  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE----SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~----~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      +++..++.|+.+++.|+|.+|+..|++|+++. |.    .+..+.++.++|.+|.++|+|++|+..|+++|+++|+++.+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~-~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQL-DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-hhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence            36678899999999999999999999999987 43    23467899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q psy4703          84 LFRRCQAYEAI   94 (401)
Q Consensus        84 ~~~~a~a~~~l   94 (401)
                      +.+++.....+
T Consensus        83 ~~Nl~~~~~~l   93 (95)
T d1tjca_          83 NGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99987765544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=3.8e-12  Score=110.85  Aligned_cols=91  Identities=11%  Similarity=0.056  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~  125 (401)
                      .+..+.+.|.+|++.|+|++|+..|++||+++|.++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4703         126 AIVTKRMQENE  136 (401)
Q Consensus       126 ~~~~~~~~a~~  136 (401)
                      ..+++...+..
T Consensus        83 ~~l~~~~~A~~   93 (201)
T d2c2la1          83 LEMESYDEAIA   93 (201)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHCCCHHHHHH
Confidence            99999877665

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2e-11  Score=95.30  Aligned_cols=83  Identities=13%  Similarity=0.037  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ  118 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-------~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~  118 (401)
                      .+.-++++|.++++.|+|.+|+.+|++|+++.|.+       +.++.++|.++.++|+|++|+..|+++++++|+++.+.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35567899999999999999999999999986643       68899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy4703         119 PVLSRLFAIV  128 (401)
Q Consensus       119 ~~L~~l~~~~  128 (401)
                      .+++.+...+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9987766554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.23  E-value=2.8e-11  Score=103.94  Aligned_cols=95  Identities=19%  Similarity=0.228  Sum_probs=87.9

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      ..+|..+..+.++|..+++.|+|++|+..|+++|+++ |+   ++.+|+++|.+|+.+|+|++|+.+|+++++++|++..
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~---~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~  146 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA  146 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hh---hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            3567888899999999999999999999999999999 77   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAY  101 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~  101 (401)
                      ++..++.++..+..+.++.
T Consensus       147 ~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         147 IQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999988877776654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=8.4e-11  Score=102.68  Aligned_cols=103  Identities=15%  Similarity=0.142  Sum_probs=94.3

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-------------------CcchHHHHHHHHHHHHHcCCHH
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------------------SHERATCLKNRAAVYLKQNQND   64 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-------------------~~~~~~~~~n~a~~y~klg~y~   64 (401)
                      .+....+.+...|+.++..|++++|+..|.+|+.+. ++                   .+....++.+++.++..+|+|+
T Consensus         6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2           6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREW-RGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            345567889999999999999999999999999998 43                   1345578999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703          65 KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (401)
Q Consensus        65 ~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~ka  107 (401)
                      +|+.+|+++++++|.+..+|..++.+|..+|++++|+..|+++
T Consensus        85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.8e-10  Score=97.11  Aligned_cols=106  Identities=12%  Similarity=0.141  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---------------PKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---------------~kA~~~~a~a~~~lg~~eeA~~~~~kal~l  110 (401)
                      .+..+.+.|..+++.|+|++|+..|+++|.+.|..               ..+|.++|.+|+++|+|++|+.++++++++
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            45677889999999999999999999999998754               366888999999999999999999999999


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703         111 EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (401)
Q Consensus       111 ~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (401)
                      +|++..++..++.++..+++...+..        +|+.++. .|.+...+
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~--------~~~~al~l~P~n~~~~  133 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARA--------DFQKVLQLYPNNKAAK  133 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCSSCHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHH--------HHHHHHHhCCCCHHHH
Confidence            99999999999999999999865544        7788877 44444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.1e-11  Score=119.34  Aligned_cols=120  Identities=12%  Similarity=0.036  Sum_probs=85.5

Q ss_pred             cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (401)
Q Consensus         3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k   82 (401)
                      ..+|+.+..+...|..+.+.|++++|+..|.+++..+      ...++.++|.++...|+|++|+.+|.+|++++|++..
T Consensus       114 ~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~  187 (497)
T d1ya0a1         114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ  187 (497)
T ss_dssp             -----------------------------CCHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH
T ss_pred             CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchH
Confidence            4577888889999999999999999999999999988      4568899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~  128 (401)
                      +|+++|.++...|++.+|+.+|.+++.++|..+.+..+|..+....
T Consensus       188 ~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         188 PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998876543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=6e-11  Score=97.11  Aligned_cols=91  Identities=11%  Similarity=0.030  Sum_probs=80.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQG---DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP   78 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g---~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP   78 (401)
                      +..+|.+++.+++.|+.+++.+   ++++|+..|++++..+ |. +....+++++|.+|+++|+|++|+.+|+++|+++|
T Consensus        26 L~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-~~-~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          26 KAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SK-EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             HHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-CC-chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCc
Confidence            5678999999999999998755   5567999999999998 64 34567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q psy4703          79 DDPKALFRRCQAYEAI   94 (401)
Q Consensus        79 ~~~kA~~~~a~a~~~l   94 (401)
                      ++..|...++.+..++
T Consensus       104 ~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_         104 QNNQAKELERLIDKAM  119 (122)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999888776654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.10  E-value=4.5e-10  Score=96.33  Aligned_cols=88  Identities=19%  Similarity=0.207  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~   87 (401)
                      .+..+.+.|.++++.|+|++|+.+|++++.++ |+   +..+|+++|.+|..+|+|++|+.+|.++++++|++..++..+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~---~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  138 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI  138 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34567789999999999999999999999999 77   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHH
Q psy4703          88 CQAYEAIGKFEE   99 (401)
Q Consensus        88 a~a~~~lg~~ee   99 (401)
                      +.+...++.+.+
T Consensus       139 ~~~~~~~~~~~e  150 (168)
T d1kt1a1         139 FMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHH
Confidence            999888877665

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=4.9e-10  Score=104.09  Aligned_cols=136  Identities=8%  Similarity=0.074  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----   80 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-----   80 (401)
                      -++.|...|+.+...|+|++|+++|.+|+++..  .+++..+.+|.++|.||.++|++++|+.+|++++++.+..     
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            467789999999999999999999999999852  1224467899999999999999999999999999987654     


Q ss_pred             -HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          81 -PKALFRRCQAYEA-IGKFEEAYTDAKHIHRVEPTNK------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        81 -~kA~~~~a~a~~~-lg~~eeA~~~~~kal~l~P~~~------~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                       ..++.++|.+|.. +|++++|+..|++++++.+.+.      .+...++.++...++..++        ..+|+.+..
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A--------~~~~~~~~~  186 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA--------SDIYSKLIK  186 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH--------HHHHHHHHH
Confidence             6788999999865 7999999999999998865432      2344556666666555443        346666665

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.06  E-value=1.1e-10  Score=98.18  Aligned_cols=96  Identities=17%  Similarity=0.139  Sum_probs=83.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC---------
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQ----------GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ---------   62 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~----------g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~---------   62 (401)
                      |+.+|++++.+...|..++..          +.+++|+.+|++|++++ |+   ++.+|+++|.+|..+|+         
T Consensus        24 l~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~---~~~a~~~lG~~y~~~g~~~~~~~~~~   99 (145)
T d1zu2a1          24 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PK---KDEAVWCIGNAYTSFAFLTPDETEAK   99 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-ch---hhHHHhhHHHHHHHcccchhhHHHHH
Confidence            578999999999999999854          55689999999999999 77   89999999999998764         


Q ss_pred             --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy4703          63 --NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY  101 (401)
Q Consensus        63 --y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~  101 (401)
                        |++|+.+|.++++++|++..++..++.+....+.+.++.
T Consensus       100 ~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1         100 HNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              799999999999999999999988888876665555543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.03  E-value=7.3e-10  Score=93.63  Aligned_cols=84  Identities=14%  Similarity=0.116  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (401)
Q Consensus         9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a   88 (401)
                      +..+.++|..+++.|+|++|+.+|+++|.++ |+   +..+|+++|.+|..+|+|++|+.+|+++++++|++..+...++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~---~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~  142 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KN---NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  142 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhcccccc-ch---hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4567789999999999999999999999999 76   8899999999999999999999999999999999999999998


Q ss_pred             HHHHHcCC
Q psy4703          89 QAYEAIGK   96 (401)
Q Consensus        89 ~a~~~lg~   96 (401)
                      .+..++++
T Consensus       143 ~~~~kl~~  150 (153)
T d2fbna1         143 LCVNKLKE  150 (153)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=6.6e-10  Score=104.68  Aligned_cols=127  Identities=14%  Similarity=0.077  Sum_probs=111.5

Q ss_pred             ccCChhHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC--HHHHHHH
Q psy4703           2 IDNNMNDYNKLKESGNSAFK----------QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ--NDKVIED   69 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~----------~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~--y~~Ai~~   69 (401)
                      |+.+|++..+|..++..+..          .|++.+|+.+|+++++.+ |+   +..+|+++|.++..+++  +++|+..
T Consensus        56 l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk---~~~~~~~~~~~~~~~~~~~~~~a~~~  131 (334)
T d1dcea1          56 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK---SYGTWHHRCWLLSRLPEPNWARELEL  131 (334)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             HHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CC---cHHHHHHhhHHHHHhccccHHHHHHH
Confidence            56789998888777666544          445899999999999999 77   89999999999988775  8999999


Q ss_pred             HHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHH
Q psy4703          70 CSKSLEIVPDDPKAL-FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM  132 (401)
Q Consensus        70 ~~kAL~ldP~~~kA~-~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~  132 (401)
                      +.++++++|.+..++ +.+|.++...+.+++|+..++++++++|++..++..++.++..+++..
T Consensus       132 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~  195 (334)
T d1dcea1         132 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  195 (334)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHH
Confidence            999999999999986 577899999999999999999999999999999999999988876643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=3.9e-08  Score=92.14  Aligned_cols=143  Identities=10%  Similarity=0.045  Sum_probs=112.7

Q ss_pred             HcCC-HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703          21 KQGD-YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ----------NDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (401)
Q Consensus        21 ~~g~-y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~----------y~~Ai~~~~kAL~ldP~~~kA~~~~a~   89 (401)
                      ..|. +++|+..|+++++++ |+   +..+|.+++.++..++.          +.+|+.+++++++.+|+++.+++.+|.
T Consensus        40 ~~~~~~~~al~~~~~~l~~~-P~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~  115 (334)
T d1dcea1          40 QAGELDESVLELTSQILGAN-PD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW  115 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhH
Confidence            3444 489999999999999 77   88899888888766544          899999999999999999999999999


Q ss_pred             HHHHcCC--HHHHHHHHHHHHhhCCCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHH
Q psy4703          90 AYEAIGK--FEEAYTDAKHIHRVEPTNKAIQP-VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (401)
Q Consensus        90 a~~~lg~--~eeA~~~~~kal~l~P~~~~~~~-~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~  165 (401)
                      ++..+++  +++|+..++++++++|++..+.. ..+.++...+...        .+.++++.++. .|.+..........
T Consensus       116 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~--------~Al~~~~~~i~~~p~~~~a~~~l~~~  187 (334)
T d1dcea1         116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA--------EELAFTDSLITRNFSNYSSWHYRSCL  187 (334)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH--------HHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccH--------HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9998876  89999999999999999877754 4445554444432        34457788888 56666666677777


Q ss_pred             HHHhhhcchh
Q psy4703         166 LVVLAREMSG  175 (401)
Q Consensus       166 L~~l~~~~~g  175 (401)
                      +..+++.+.+
T Consensus       188 ~~~~~~~~~A  197 (334)
T d1dcea1         188 LPQLHPQPDS  197 (334)
T ss_dssp             HHHHSCCCCS
T ss_pred             HHHhcCHHHH
Confidence            7777776543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=9.7e-09  Score=95.09  Aligned_cols=112  Identities=14%  Similarity=0.066  Sum_probs=95.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC--
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLK-QNQNDKVIEDCSKSLEIVPD--   79 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---~~~~~~~~~n~a~~y~k-lg~y~~Ai~~~~kAL~ldP~--   79 (401)
                      +..+..+.+.|+.+.+.|++++|+.+|.+++++. +.   ......++.++|.+|.. .|+|++|+..|.+++++.+.  
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~  152 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHh-hhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4557889999999999999999999999999987 42   22346788899998865 69999999999999988542  


Q ss_pred             ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Q psy4703          80 ----DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ  118 (401)
Q Consensus        80 ----~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~  118 (401)
                          ...++.++|.++..+|+|++|+..|++++.+.|.++...
T Consensus       153 ~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  195 (290)
T d1qqea_         153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh
Confidence                256689999999999999999999999999999876443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.85  E-value=8.5e-09  Score=86.91  Aligned_cols=90  Identities=12%  Similarity=0.071  Sum_probs=72.8

Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703          47 ATCLKNR--AAVYLKQNQNDKVIEDCSKSLEIVPDD------------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP  112 (401)
Q Consensus        47 ~~~~~n~--a~~y~klg~y~~Ai~~~~kAL~ldP~~------------~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P  112 (401)
                      +.+|.++  |..++..|+|++|+..|+++|+++|+.            ..+|.++|.+|.++|+|++|+.++++++++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            4455544  888999999999999999999998864            46799999999999999999999999999865


Q ss_pred             CC-----------ccHHHHHHHHHHHHHHHHHHHH
Q psy4703         113 TN-----------KAIQPVLSRLFAIVTKRMQENE  136 (401)
Q Consensus       113 ~~-----------~~~~~~L~~l~~~~~~~~~a~~  136 (401)
                      ..           ..++..++.++..+++..++..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~  121 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP  121 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHH
Confidence            32           1245667777777777766655

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=4.8e-08  Score=89.24  Aligned_cols=129  Identities=9%  Similarity=0.059  Sum_probs=101.7

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q psy4703           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH--ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-   80 (401)
Q Consensus         4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~--~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-   80 (401)
                      .++-.++....+|..++..|++++|+.+|+++++.. |+.+  ....++.++|.+|+.+|++++|+..|.+++++.|.. 
T Consensus         7 ~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~   85 (366)
T d1hz4a_           7 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD   85 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence            345567777888999999999999999999999999 6522  245688999999999999999999999999876532 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----c---cHHHHHHHHHHHHHHHHH
Q psy4703          81 -----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-----K---AIQPVLSRLFAIVTKRMQ  133 (401)
Q Consensus        81 -----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~-----~---~~~~~L~~l~~~~~~~~~  133 (401)
                           ..+++.++.++...|++..|...+.+++.+.+..     .   .+...++.++...++...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  151 (366)
T d1hz4a_          86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE  151 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhh
Confidence                 5678999999999999999999999999865422     1   233345555555554433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=9.7e-09  Score=102.85  Aligned_cols=127  Identities=12%  Similarity=0.004  Sum_probs=78.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy4703          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG   95 (401)
Q Consensus        16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg   95 (401)
                      +......+.|+.|+..|.++++++ |+   ....+.++|.++.+.|++++|+..+.+++..+|  ..+++++|.++...|
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~-~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~  166 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVD-LP---CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRN  166 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-----------------------------------CCHHHHHHH--HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC-hh---hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcc
Confidence            333444566777777777777777 55   788999999999999999999999999999887  478999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Q psy4703          96 KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM  156 (401)
Q Consensus        96 ~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~  156 (401)
                      +|++|+.+|++|++++|++...+..|+.++...++...+.        .+|.+++. .++-.
T Consensus       167 ~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~--------~~y~ral~~~~~~~  220 (497)
T d1ya0a1         167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI--------FYYCRSIAVKFPFP  220 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH--------HHHHHHHSSSBCCH
T ss_pred             cHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHH--------HHHHHHHhCCCCCH
Confidence            9999999999999999999999999999999888775444        37888877 34433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=3.9e-08  Score=89.82  Aligned_cols=108  Identities=15%  Similarity=-0.026  Sum_probs=93.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Q psy4703           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VPD   79 (401)
Q Consensus         6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l------dP~   79 (401)
                      +..+..+...|..+...|++++|...|.+++...+..++.....+.++|.+|+.+|++++|+..+++++..      .|.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence            34566778889999999999999999999999883334556778899999999999999999999999854      456


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (401)
Q Consensus        80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~  113 (401)
                      ...+++.+|.+|..+|++++|+..+++++++.+.
T Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            6789999999999999999999999999987653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.60  E-value=1.4e-08  Score=93.73  Aligned_cols=88  Identities=14%  Similarity=0.151  Sum_probs=80.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy4703          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG   95 (401)
Q Consensus        16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg   95 (401)
                      +..+++.|++++|+..|+++|+.+ |+   +..++.+++.+|...|++++|+..++++++++|++..++..++.++...+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~-P~---d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~   78 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKAS-PK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ   78 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            567889999999999999999999 77   99999999999999999999999999999999999999999999998888


Q ss_pred             CHHHHHHHHHHH
Q psy4703          96 KFEEAYTDAKHI  107 (401)
Q Consensus        96 ~~eeA~~~~~ka  107 (401)
                      ..+++...+.+.
T Consensus        79 ~~~~a~~~~~~~   90 (264)
T d1zbpa1          79 ARKDFAQGAATA   90 (264)
T ss_dssp             HHHHHTTSCCCE
T ss_pred             ccHHHHHHhhhh
Confidence            888776655443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=3.3e-07  Score=79.18  Aligned_cols=108  Identities=9%  Similarity=0.015  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHH
Q psy4703          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----------------------PKALFRRCQAYEAIGKFEEAYTD  103 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~----------------------~kA~~~~a~a~~~lg~~eeA~~~  103 (401)
                      ....+.+.|......|++++|+..|.+||++.+..                      ..++.+++.++..+|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            66788899999999999999999999999997644                      26789999999999999999999


Q ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy4703         104 AKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTS  153 (401)
Q Consensus       104 ~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  153 (401)
                      ++++++++|.+..++..+.+++...++..++...+.....-+.+.+...|
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P  139 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  139 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999999999999998888866544443333333333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.6e-06  Score=80.32  Aligned_cols=136  Identities=7%  Similarity=-0.067  Sum_probs=112.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      .|.+...+...+......|+++.|...|.+++... |.  ....+|...+....+.|+++.|...|.++++..|.+...+
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-~~--~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~  171 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DI--DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  171 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SS--CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Confidence            56667777888888899999999999999999988 64  1455788888888899999999999999999999999988


Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703          85 FRRCQAYEA-IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (401)
Q Consensus        85 ~~~a~a~~~-lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (401)
                      ...|..... .|+.+.|...|++++..+|+++.++..+.......++..        ++..+|+++..
T Consensus       172 ~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~--------~aR~~fe~ai~  231 (308)
T d2onda1         172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN--------NTRVLFERVLT  231 (308)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChH--------HHHHHHHHHHH
Confidence            888876544 588999999999999999999988888888777666553        35557888776

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=7.9e-07  Score=71.88  Aligned_cols=83  Identities=12%  Similarity=0.065  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703          46 RATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVPDDP-KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (401)
Q Consensus        46 ~~~~~~n~a~~y~klg---~y~~Ai~~~~kAL~ldP~~~-kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L  121 (401)
                      .....|+.|.|+.+..   +.++++..++.++..+|.+. .++|.+|.+|.++|+|++|..+++++++++|+|..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            4678899999998764   56789999999999999764 7999999999999999999999999999999999998877


Q ss_pred             HHHHHHH
Q psy4703         122 SRLFAIV  128 (401)
Q Consensus       122 ~~l~~~~  128 (401)
                      ..+...+
T Consensus       114 ~~Ie~~~  120 (124)
T d2pqrb1         114 SMVEDKI  120 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1.7e-06  Score=80.05  Aligned_cols=126  Identities=8%  Similarity=-0.044  Sum_probs=102.9

Q ss_pred             ccCChhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Q psy4703           2 IDNNMNDY-NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYL-KQNQNDKVIEDCSKSLEIVPD   79 (401)
Q Consensus         2 i~~~p~~a-~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~-klg~y~~Ai~~~~kAL~ldP~   79 (401)
                      |...|.+. ..+...++...+.|+++.|...|.++++.. |.   ....|...|.... ..|+.+.|...|++++..+|.
T Consensus       126 l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~---~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~  201 (308)
T d2onda1         126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RT---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TC---CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh
Confidence            34456543 467888999999999999999999999999 76   5667777777654 468999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHHHH
Q psy4703          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA----IQPVLSRLFAIVTKR  131 (401)
Q Consensus        80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~----~~~~L~~l~~~~~~~  131 (401)
                      ++..+...+..+...|+++.|...|++++...|.++.    ++..........|..
T Consensus       202 ~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~  257 (308)
T d2onda1         202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999999999999999887654    444444444444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.33  E-value=1.7e-07  Score=86.20  Aligned_cols=113  Identities=10%  Similarity=0.030  Sum_probs=98.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC
Q psy4703           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-IVPDD   80 (401)
Q Consensus         2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~-ldP~~   80 (401)
                      |+.+|+++..+...|..++..|+|++|+..|+++++++ |+   ....+.+++.++...+...++...+..... .+|..
T Consensus        23 l~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~---~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~   98 (264)
T d1zbpa1          23 IKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PE---YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEE   98 (264)
T ss_dssp             HHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GG---GHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchH
Confidence            67899999999999999999999999999999999999 76   888999999998888888877766555433 35677


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Q psy4703          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ  118 (401)
Q Consensus        81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~  118 (401)
                      ..+++.++.++...|++++|...++++.++.|+.+..+
T Consensus        99 ~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          99 LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            78889999999999999999999999999999887653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.12  E-value=2.2e-05  Score=70.12  Aligned_cols=106  Identities=14%  Similarity=0.160  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDDPKA   83 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k----lg~y~~Ai~~~~kAL~ldP~~~kA   83 (401)
                      ++++++..|..++..|||++|+.+|++|.+..      +..+++++|.+|..    ..++..|..++..+...  .++.+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a   72 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNG   72 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccch
Confidence            36789999999999999999999999999887      78899999999998    77999999999998875  48899


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703          84 LFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (401)
Q Consensus        84 ~~~~a~a~~~----lg~~eeA~~~~~kal~l~P~~~~~~~~L~~  123 (401)
                      ...+|..+..    ..+++.|...++++....+  ..+...++.
T Consensus        73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~  114 (265)
T d1ouva_          73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGG  114 (265)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             hhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcc
Confidence            9999988876    5689999999999987654  334444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=1.5e-05  Score=64.13  Aligned_cols=81  Identities=12%  Similarity=0.035  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703           8 DYNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~~g~---y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~   84 (401)
                      .++..++.|..+.+..+   .++||..+++++..+ |.  ....+++++|.+|+++|+|++|..+++++|+++|++..|.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~--~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-ch--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            36788999999997654   468999999999988 64  2468999999999999999999999999999999999887


Q ss_pred             HHHHHHH
Q psy4703          85 FRRCQAY   91 (401)
Q Consensus        85 ~~~a~a~   91 (401)
                      ..+-.+.
T Consensus       111 ~L~~~Ie  117 (124)
T d2pqrb1         111 ALKSMVE  117 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.72  E-value=0.0002  Score=57.50  Aligned_cols=80  Identities=13%  Similarity=0.113  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----c
Q psy4703          23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA----I   94 (401)
Q Consensus        23 g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k----lg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~----l   94 (401)
                      .++++|+.+|+++.+..      ++.+.+++|..|+.    ..++++|+.+|+++.+.  .++.+.+++|.+|..    .
T Consensus        37 ~~~~~a~~~~~~aa~~g------~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~  108 (133)
T d1klxa_          37 INKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV  108 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred             cCHHHHHHHHhhhhccc------chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccC
Confidence            35566666666666555      55566666666654    34566666666666554  356666666666655    3


Q ss_pred             CCHHHHHHHHHHHHhh
Q psy4703          95 GKFEEAYTDAKHIHRV  110 (401)
Q Consensus        95 g~~eeA~~~~~kal~l  110 (401)
                      .++++|+.+|++|.+.
T Consensus       109 ~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_         109 KNEKQAVKTFEKACRL  124 (133)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHC
Confidence            4566666666666554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.67  E-value=0.0002  Score=63.50  Aligned_cols=97  Identities=16%  Similarity=0.125  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q psy4703           8 DYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPD   79 (401)
Q Consensus         8 ~a~~l~~~Gn~~~~----~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k----lg~y~~Ai~~~~kAL~ldP~   79 (401)
                      ....+...|..+..    ..+...+..++..+.+..      ++.+++++|.+|..    ..++++|+.+|+++.+.  +
T Consensus       141 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g------~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g  212 (265)
T d1ouva_         141 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--E  212 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--T
T ss_pred             ccchhhhhhhhhccCCCcccccccchhhhhcccccc------ccccccchhhhcccCcccccchhhhhhhHhhhhcc--c
Confidence            34556666777665    456667777777777665      67778888888876    56788888888888776  4


Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q psy4703          80 DPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEP  112 (401)
Q Consensus        80 ~~kA~~~~a~a~~~----lg~~eeA~~~~~kal~l~P  112 (401)
                      ++.+++++|.+|..    ..++++|+.+|++|....+
T Consensus       213 ~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         213 NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            67888888888875    3478888888888877653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.59  E-value=0.00021  Score=57.48  Aligned_cols=93  Identities=15%  Similarity=0.094  Sum_probs=76.6

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q psy4703          23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA----IGKFE   98 (401)
Q Consensus        23 g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~----lg~~e   98 (401)
                      .|+++|+.+|+++.+..      ++.+.++++.  ....++++|+.+++++.+.  +++.+.+.+|..|..    ..+++
T Consensus         7 kd~~~A~~~~~kaa~~g------~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~   76 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN------EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLR   76 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT------CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cCHHHHHHHHHHHHHCC------Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhH
Confidence            47899999999999988      4556666664  3467899999999999875  689999999999987    56799


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703          99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (401)
Q Consensus        99 eA~~~~~kal~l~P~~~~~~~~L~~l~~~  127 (401)
                      +|+.+|+++.+.  .++.+...|+.++..
T Consensus        77 ~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          77 KAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            999999999875  567777888777654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0076  Score=58.32  Aligned_cols=180  Identities=13%  Similarity=0.135  Sum_probs=113.9

Q ss_pred             HHhhcCCCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhh-H---HHHH-------HH-HHHh
Q psy4703         147 KYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLG-E---EDFI-------TS-IIKQ  214 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA-~---e~fi-------~~-i~~~  214 (401)
                      -.++..+.+.+.+..+...|..+.+.+.....++..+++..+..+++ +.++++... .   .+..       .. ...+
T Consensus        65 ~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g  143 (529)
T d1jdha_          65 VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG  143 (529)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhC-CCCHHHHHHHHHHHHHhhcccchhhhHHHhcC
Confidence            33444555667778888888888887788888889999999999998 667776332 1   1111       22 3556


Q ss_pred             cHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCH
Q psy4703         215 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDA  294 (401)
Q Consensus       215 gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~  294 (401)
                      |++.|-.+++++++.++..+...|..+... ..+........|....|....+    . ..+...+..+++-|..++.++
T Consensus       144 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~----~-~~~~~~~~~~~~~l~~ls~~~  217 (529)
T d1jdha_         144 GLQKMVALLNKTNVKFLAITTDCLQILAYG-NQESKLIILASGGPQALVNIMR----T-YTYEKLLWTTSRVLKVLSVCS  217 (529)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHH----H-CCCHHHHHHHHHHHHHHTTST
T ss_pred             CchHHHHHHHccChHHHHHHHHHHHHHhhh-hhHHHHHHHhcccchHHHHHHH----h-hhhHHHHHHHHHHHhhhhccc
Confidence            789999999999999888777767666432 1111111111233333433332    2 234567788899999999999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhccc
Q psy4703         295 EVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDK  336 (401)
Q Consensus       295 ~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~  336 (401)
                      +.++.+++.. .++.|+.++++. +..+...++ .++.|+++
T Consensus       218 ~~~~~~~~~g-~~~~L~~ll~~~-~~~~~~~a~-~~l~~ls~  256 (529)
T d1jdha_         218 SNKPAIVEAG-GMQALGLHLTDP-SQRLVQNCL-WTLRNLSD  256 (529)
T ss_dssp             THHHHHHHTT-HHHHHHTTTTSS-CHHHHHHHH-HHHHHHHT
T ss_pred             cccchhhhhh-hhhhHHHHhccc-chhhhhhhh-hHHHhccc
Confidence            9998887653 566666666544 333444444 44444443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.032  Score=49.05  Aligned_cols=172  Identities=17%  Similarity=0.124  Sum_probs=108.8

Q ss_pred             hhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHH-HhhccCchhHHhhHHHHH-----------HH-HHHhcHHHHHHH
Q psy4703         156 MDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINT-LLKCETNEEIYLGEEDFI-----------TS-IIKQGVDILKRL  222 (401)
Q Consensus       156 ~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~-ll~~~~~~e~~lA~e~fi-----------~~-i~~~gv~~Lk~l  222 (401)
                      .+.+..+...|..+.+....+..+...||+..+.. +++ +.++++...--..+           .. ...+|++.|-++
T Consensus        31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~-s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            34555566666666655455556667788776654 455 56666644321111           22 345678888888


Q ss_pred             Hc-CCChhHHHHHHHhhhhccccCCCCCCCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhcc-CCHHHHHh
Q psy4703         223 YM-SKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT-LDAEVKEA  299 (401)
Q Consensus       223 ~~-s~~d~i~~ralvgLckl~~~gg~d~~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~-~~~~vke~  299 (401)
                      +. ..++.++..++..|+.+...  .+.....| ..|-.    ...-+++.  +.+.+.+.+++-.|+++. -+++.++.
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~~gi----~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~  181 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVRE--QEAGLLQFLRLDGF----SVLMRAMQ--QQVQKLKVKSAFLLQNLLVGHPEHKGT  181 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHH----HHHHHHHH--SSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhcc--chhhHHHHHHhhhh----hHHHHHHh--cCchHHHHHHHHHHHHHHhccHHHHHH
Confidence            86 56778888888877777542  11111111 11211    22223332  246788999999999976 57888888


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         300 LIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       300 ~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      +++. ..+..|++++++. +..+.=-++ .++.||+...|
T Consensus       182 ~~~~-~~v~~L~~lL~~~-~~~~~~~a~-~aL~~L~~~~~  218 (264)
T d1xqra1         182 LCSM-GMVQQLVALVRTE-HSPFHEHVL-GALCSLVTDFP  218 (264)
T ss_dssp             HHHT-THHHHHHHHHTSC-CSTHHHHHH-HHHHHHHTTCH
T ss_pred             HHHh-hhHHHHHHHHcCC-CHHHHHHHH-HHHHHHHhcCH
Confidence            8765 5689999999887 666666667 88899998777

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.43  E-value=0.14  Score=47.09  Aligned_cols=65  Identities=15%  Similarity=0.207  Sum_probs=53.2

Q ss_pred             CCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         273 PARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       273 ~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      ...+++.+.+|+..|++++..++..-.++.+...+..|++++++. +..+...++ .++.|++..-+
T Consensus       198 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~-~~~~~~~al-~~l~~l~~~~~  262 (434)
T d1q1sc_         198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPAL-RAIGNIVTGTD  262 (434)
T ss_dssp             TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHH-HHHHHHTTSCH
T ss_pred             hccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccc-hhhhhhchh-hhhhhHHhhhh
Confidence            345778899999999999987766666667778899999999887 777888888 89999986555

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.66  E-value=0.4  Score=45.17  Aligned_cols=177  Identities=15%  Similarity=0.114  Sum_probs=106.1

Q ss_pred             CCCChhHHHHHHHHHHHhhhcchh-hHHHhhhhHHHHHHHHhhccCchhHHhh----HHHHH-------HHH-HHhcHHH
Q psy4703         152 TSAPMDKRVTAVNNLVVLAREMSG-AEMLLKSGVAKQINTLLKCETNEEIYLG----EEDFI-------TSI-IKQGVDI  218 (401)
Q Consensus       152 ~~~~~~~~~~a~~~L~~l~~~~~g-ae~~~~e~~v~~L~~ll~~~~~~e~~lA----~e~fi-------~~i-~~~gv~~  218 (401)
                      .+.+.+.+..++..|.-+...+.. ...+...|++..+..++. +.++++...    +.+..       ..+ ..++++.
T Consensus       130 ~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~-s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~  208 (503)
T d1wa5b_         130 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP  208 (503)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhc-CCChhHHHHHHHHHHHHhhhhHHHHHHHHhhccccc
Confidence            344455556666666655543333 344445566888888887 556665322    11111       233 4466899


Q ss_pred             HHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC-CHHHH
Q psy4703         219 LKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL-DAEVK  297 (401)
Q Consensus       219 Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~-~~~vk  297 (401)
                      |-.++.+.+..+...+...|+.+.... .+..  .+  .....+....-.++  ...|++.+.+++.+|.|++- +++..
T Consensus       209 L~~ll~~~~~~~~~~~~~~l~nl~~~~-~~~~--~~--~~~~~~l~~l~~~l--~~~d~~~~~~~~~~l~~l~~~~~~~~  281 (503)
T d1wa5b_         209 ILGLFNSNKPSLIRTATWTLSNLCRGK-KPQP--DW--SVVSQALPTLAKLI--YSMDTETLVDACWAISYLSDGPQEAI  281 (503)
T ss_dssp             HHHGGGSCCHHHHHHHHHHHHHHHCCS-SSCC--CH--HHHGGGHHHHHHHT--TCCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             chhhcccCCHHHHHHHHHHHHHHhcCC-ccch--HH--HHHHHHHHHHHHHh--ccccHHHHHHHHHHHHhhccCCchhh
Confidence            999998877777655555555554321 1111  00  00111222333333  24577899999999999985 44555


Q ss_pred             HhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         298 EALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       298 e~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      +.++ +...+..|+.++.+. +..+..-++ .++.|++...+
T Consensus       282 ~~~~-~~~~~~~l~~ll~~~-~~~v~~~al-~~l~nl~~~~~  320 (503)
T d1wa5b_         282 QAVI-DVRIPKRLVELLSHE-STLVQTPAL-RAVGNIVTGND  320 (503)
T ss_dssp             HHHH-HTTCHHHHHHGGGCS-CHHHHHHHH-HHHHHHTTSCH
T ss_pred             hhhh-hhhhhhhhhhcccCC-chhhhhhHH-HHHHHHHHHHH
Confidence            5554 345788899998877 667778888 89999997666

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.16  Score=45.75  Aligned_cols=121  Identities=13%  Similarity=0.113  Sum_probs=79.1

Q ss_pred             HHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhcc
Q psy4703         212 IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT  291 (401)
Q Consensus       212 ~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~  291 (401)
                      ..++++.|-.++++.++.++..++..|+.+...   +.....+.++....|.+...........+.+.+.+|+.-|.-++
T Consensus       329 ~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~---~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~  405 (457)
T d1xm9a1         329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM  405 (457)
T ss_dssp             TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHH
T ss_pred             HcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC---hhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHh
Confidence            346799999999999999998888888877542   11111111111112222222211122345568889999999877


Q ss_pred             -CCHHHHHhhcCCHHHHHHHHHHHhcCCCCc-chhhhhhhHHhhcccCC
Q psy4703         292 -LDAEVKEALIEDKPALAALVDVASSVKYKN-VWNGTQSDALKDVDKAF  338 (401)
Q Consensus       292 -~~~~vke~~~~d~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~n~~~~~  338 (401)
                       -+++.++.++ +...++.|++++++. +++ +.-+.+ ..+-||.++-
T Consensus       406 ~~~~~~~~~l~-~~g~i~~L~~l~~~~-~~~~~~~aA~-~~L~~L~~~~  451 (457)
T d1xm9a1         406 ASQPQLAKQYF-SSSMLNNIINLCRSS-ASPKAAEAAR-LLLSDMWSSK  451 (457)
T ss_dssp             TTCTHHHHHHC-CHHHHHHHHHHHHCT-TCHHHHHHHH-HHHHTTSSST
T ss_pred             cCCHHHHHHHH-HCCCHHHHHHHHhCC-CCHHHHHHHH-HHHHHHHcCH
Confidence             4688888875 688999999999987 554 455555 8999987554

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.57  Score=41.87  Aligned_cols=160  Identities=15%  Similarity=0.124  Sum_probs=103.9

Q ss_pred             CCChhHHHHHHHHHHHhhhc-chhhHHHhhhhHHHHHHHHhhccCchhHHhhH----HHHH-------HHH-HHhcHHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLARE-MSGAEMLLKSGVAKQINTLLKCETNEEIYLGE----EDFI-------TSI-IKQGVDIL  219 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~-~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~----e~fi-------~~i-~~~gv~~L  219 (401)
                      ..+.+.+..++..|..+... +.....+...||+..|.++++ +.++++...-    .+..       ..+ ..+|++.|
T Consensus        13 ~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~l   91 (457)
T d1xm9a1          13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREA   91 (457)
T ss_dssp             SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHH
Confidence            45567777777777777654 455677778899999999998 6777775431    1111       233 44568888


Q ss_pred             HHHHc-CCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHH-HHhhhc---------CCCCCchhHHhHHhhhh
Q psy4703         220 KRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEA-CRRFLV---------NPARDPDIRRWAAEGLA  288 (401)
Q Consensus       220 k~l~~-s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~-~~~~l~---------~~~~~~~~~~~~~egla  288 (401)
                      -+++. ..+++++..|...|+.+.....  .......+| ...+... ...+..         ....+.+.+..+...|.
T Consensus        92 i~~l~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~  168 (457)
T d1xm9a1          92 VSLLRRTGNAEIQKQLTGLLWNLSSTDE--LKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLR  168 (457)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHTSSS--THHHHHHHH-HHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHHhhhh--hHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHH
Confidence            88886 6777888888888887765321  111111111 1111111 111111         12346678888999999


Q ss_pred             hccCCHHHHHhhcCCHHHHHHHHHHHhc
Q psy4703         289 YLTLDAEVKEALIEDKPALAALVDVASS  316 (401)
Q Consensus       289 y~~~~~~vke~~~~d~~~l~~l~~~~~~  316 (401)
                      .++.+++.+..++.+...+..|++++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~i~~l~~ll~~  196 (457)
T d1xm9a1         169 NLSSADAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             HHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             HHhcCchHHHHHHHHhccHHHHHHHHhc
Confidence            9999999999999998888888888754

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.34  Score=46.05  Aligned_cols=175  Identities=15%  Similarity=0.156  Sum_probs=105.9

Q ss_pred             CCChhHHHHHHHHHHHhhhcchhhHHHhhh-hHHHHHHHHhhccCchhHHh-hH---------HHHHHHHH-HhcHHHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKS-GVAKQINTLLKCETNEEIYL-GE---------EDFITSII-KQGVDILK  220 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e-~~v~~L~~ll~~~~~~e~~l-A~---------e~fi~~i~-~~gv~~Lk  220 (401)
                      ..+...+..++..+..+.+.+.....+... +.+..+..+++...++++.. +.         ++....+. .+|++.|-
T Consensus        28 ~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li  107 (529)
T d1jdha_          28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV  107 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHH
Confidence            445666777777777766654444444444 34777777776334555432 21         22224443 46699999


Q ss_pred             HHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCC-CCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCC-HHHHH
Q psy4703         221 RLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFA-DGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD-AEVKE  298 (401)
Q Consensus       221 ~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~-~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~-~~vke  298 (401)
                      .+++++++.++..|+..|+.+....  +.....+. .|..-.|.    .+|  ...+++.+.+++..|..++.. ++.+.
T Consensus       108 ~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~~~~g~i~~Lv----~lL--~~~~~~~~~~a~~~L~~l~~~~~~~~~  179 (529)
T d1jdha_         108 KMLGSPVDSVLFYAITTLHNLLLHQ--EGAKMAVRLAGGLQKMV----ALL--NKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHC--TTHHHHHHHHTHHHHHH----HGG--GCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhhccc--chhhhHHHhcCCchHHH----HHH--HccChHHHHHHHHHHHHHhhhhhHHHH
Confidence            9999999999887777777665421  11111111 12221222    233  234678899999999998864 55544


Q ss_pred             hhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccC
Q psy4703         299 ALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKA  337 (401)
Q Consensus       299 ~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~  337 (401)
                      . ..+...+..|+.++.......+....+ .++.|++..
T Consensus       180 ~-~~~~~~~~~L~~ll~~~~~~~~~~~~~-~~l~~ls~~  216 (529)
T d1jdha_         180 I-ILASGGPQALVNIMRTYTYEKLLWTTS-RVLKVLSVC  216 (529)
T ss_dssp             H-HHHTTHHHHHHHHHHHCCCHHHHHHHH-HHHHHHTTS
T ss_pred             H-HHhcccchHHHHHHHhhhhHHHHHHHH-HHHhhhhcc
Confidence            4 344566788888887764456777777 888888753

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.66  E-value=0.38  Score=43.92  Aligned_cols=174  Identities=17%  Similarity=0.139  Sum_probs=110.3

Q ss_pred             CCChhHHHHHHHHHHHhhhcchhh-HHHhhhhHHHHHHHHhhccCchhHHhhH-----------HHHHHHH-HHhcHHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSGA-EMLLKSGVAKQINTLLKCETNEEIYLGE-----------EDFITSI-IKQGVDIL  219 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~ga-e~~~~e~~v~~L~~ll~~~~~~e~~lA~-----------e~fi~~i-~~~gv~~L  219 (401)
                      ..+.+.+..+...+..+....... ..+...+++..+..++. ..++++..+-           +.+...+ ..++++.|
T Consensus       199 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~-~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l  277 (434)
T d1q1sc_         199 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF  277 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGH
T ss_pred             ccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccc-cchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchH
Confidence            345566667777776665543333 33445567888888887 6666664331           2222333 45668899


Q ss_pred             HHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC--CHHHH
Q psy4703         220 KRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL--DAEVK  297 (401)
Q Consensus       220 k~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~--~~~vk  297 (401)
                      ..++++.+++++..++..|+.+.... .+....-...|-    ....-..+.  ..+++.+..|+.-|..++.  +++..
T Consensus       278 ~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~----i~~li~~l~--~~~~~v~~~a~~~l~nl~~~~~~~~~  350 (434)
T d1q1sc_         278 PSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGL----VPFLVGVLS--KADFKTQKEAAWAITNYTSGGTVEQI  350 (434)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTC----HHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHhhcccchhhhHHHHHHHhhhcccc-chhHHHHhhhhh----HHHHHHHHh--ccChHHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999998888888886532 111100001121    222223332  3467889999999988875  56666


Q ss_pred             HhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccC
Q psy4703         298 EALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKA  337 (401)
Q Consensus       298 e~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~  337 (401)
                      ..+++. .++..|++++.+. +..+...++ .++.|+.++
T Consensus       351 ~~l~~~-~~i~~L~~ll~~~-d~~~~~~~l-~~l~~ll~~  387 (434)
T d1q1sc_         351 VYLVHC-GIIEPLMNLLSAK-DTKIIQVIL-DAISNIFQA  387 (434)
T ss_dssp             HHHHHT-TCHHHHHHHTTSS-CHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHC-CcHHHHHHHhcCC-CHHHHHHHH-HHHHHHHHH
Confidence            666654 4688899999877 777777777 777777654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.89  E-value=0.61  Score=43.85  Aligned_cols=176  Identities=13%  Similarity=0.118  Sum_probs=107.3

Q ss_pred             CChhHHHHHHHHHHHhhhcc-hhhHHHhhhhHHHHHHHHhhccCchhHHhhH----HHHH--------HHHHHhcHHHHH
Q psy4703         154 APMDKRVTAVNNLVVLAREM-SGAEMLLKSGVAKQINTLLKCETNEEIYLGE----EDFI--------TSIIKQGVDILK  220 (401)
Q Consensus       154 ~~~~~~~~a~~~L~~l~~~~-~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~----e~fi--------~~i~~~gv~~Lk  220 (401)
                      .+.+.+..++..+.-+.... .....+...+++..+..++. ..++.+....    ..++        ..+...+++.|-
T Consensus       174 ~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~  252 (503)
T d1wa5b_         174 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA  252 (503)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG-SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHH
T ss_pred             CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcc-cCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Confidence            34455556666665544433 33455556677888888887 5555553332    2222        334667899999


Q ss_pred             HHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhh
Q psy4703         221 RLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEAL  300 (401)
Q Consensus       221 ~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~  300 (401)
                      .++++.++++...++..|+.+.... .+........|-    ....-.++-  ..++..+..|+..|..++...+-.-..
T Consensus       253 ~~l~~~d~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~----~~~l~~ll~--~~~~~v~~~al~~l~nl~~~~~~~~~~  325 (503)
T d1wa5b_         253 KLIYSMDTETLVDACWAISYLSDGP-QEAIQAVIDVRI----PKRLVELLS--HESTLVQTPALRAVGNIVTGNDLQTQV  325 (503)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTC----HHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHhhccCC-chhhhhhhhhhh----hhhhhhccc--CCchhhhhhHHHHHHHHHHHHHHHHHh
Confidence            9999989988887777777766421 111000001111    112223332  335677888999999887554433333


Q ss_pred             cCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703         301 IEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD  339 (401)
Q Consensus       301 ~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  339 (401)
                      +-+..++..|+.++++. +..+..-++ .++.|++..-|
T Consensus       326 ~~~~~~l~~l~~ll~~~-~~~i~~~~~-~~l~nl~~~~~  362 (503)
T d1wa5b_         326 VINAGVLPALRLLLSSP-KENIKKEAC-WTISNITAGNT  362 (503)
T ss_dssp             HHHTTHHHHHHHHTTCS-CHHHHHHHH-HHHHHHTTSCH
T ss_pred             hhccchHHHHHHHhcCC-CHHHHHHHH-HHHHHHhhccH
Confidence            44566889999998877 777888888 88999986554

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.19  E-value=1.6  Score=31.96  Aligned_cols=83  Identities=16%  Similarity=0.049  Sum_probs=52.8

Q ss_pred             cHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCH
Q psy4703         215 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDA  294 (401)
Q Consensus       215 gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~  294 (401)
                      +++.|-+++..++..+|..|+..|..++..                .......++|.  ..++..|..|+++|+.+    
T Consensus        23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~----------------~~~~~L~~~l~--d~~~~VR~~a~~aL~~i----   80 (111)
T d1te4a_          23 AFEPLLESLSNEDWRIRGAAAWIIGNFQDE----------------RAVEPLIKLLE--DDSGFVRSGAARSLEQI----   80 (111)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCSH----------------HHHHHHHHHHH--HCCTHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcchh----------------hhHHHHHhhhc--cchhHHHHHHHHHHHHh----
Confidence            345566667777788888777777655421                22334444453  23667888889888765    


Q ss_pred             HHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhh
Q psy4703         295 EVKEALIEDKPALAALVDVASSVKYKNVWNGTQ  327 (401)
Q Consensus       295 ~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~  327 (401)
                             .|+..+..|..++++. +..+...++
T Consensus        81 -------~~~~~~~~L~~ll~d~-~~~vr~~A~  105 (111)
T d1te4a_          81 -------GGERVRAAMEKLAETG-TGFARKVAV  105 (111)
T ss_dssp             -------CSHHHHHHHHHHTTSC-CTHHHHHHH
T ss_pred             -------CccchHHHHHHHHcCC-CHHHHHHHH
Confidence                   4677777777777655 555655554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.89  E-value=3  Score=35.51  Aligned_cols=143  Identities=11%  Similarity=0.104  Sum_probs=86.5

Q ss_pred             CCChhHHHHHHHHHHHhhhcchhh-HHHhhhhHHHHHHHHhhccCchhHHhh----HHHHH--------HHHHHhcHHHH
Q psy4703         153 SAPMDKRVTAVNNLVVLAREMSGA-EMLLKSGVAKQINTLLKCETNEEIYLG----EEDFI--------TSIIKQGVDIL  219 (401)
Q Consensus       153 ~~~~~~~~~a~~~L~~l~~~~~ga-e~~~~e~~v~~L~~ll~~~~~~e~~lA----~e~fi--------~~i~~~gv~~L  219 (401)
                      .++.+.+..++..+..+....+.. ..+...+++..+..++..+.++++...    ....+        .....+|++.|
T Consensus        70 s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L  149 (264)
T d1xqra1          70 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVL  149 (264)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHH
Confidence            456677788888887777654443 445566888888888863455655332    12222        44567889999


Q ss_pred             HHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccC-CHHHHH
Q psy4703         220 KRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL-DAEVKE  298 (401)
Q Consensus       220 k~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~-~~~vke  298 (401)
                      -+++++.++.++..++..|+.+....  +.....+.+-   ......-.+|-  ..+++.|..|+-.|..++- .|...+
T Consensus       150 ~~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~---~~v~~L~~lL~--~~~~~~~~~a~~aL~~L~~~~~~~~~  222 (264)
T d1xqra1         150 MRAMQQQVQKLKVKSAFLLQNLLVGH--PEHKGTLCSM---GMVQQLVALVR--TEHSPFHEHVLGALCSLVTDFPQGVR  222 (264)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHT---THHHHHHHHHT--SCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHhcc--HHHHHHHHHh---hhHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99999999999888888777776532  1111111110   11222333342  3466788888888887754 344444


Q ss_pred             hhcC
Q psy4703         299 ALIE  302 (401)
Q Consensus       299 ~~~~  302 (401)
                      .+..
T Consensus       223 ~~~~  226 (264)
T d1xqra1         223 ECRE  226 (264)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            4433

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.84  E-value=1.9  Score=30.70  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-------hhCCCCccHHHHH
Q psy4703          83 ALFRRCQAYEAIGKFEEAYTDAKHIH-------RVEPTNKAIQPVL  121 (401)
Q Consensus        83 A~~~~a~a~~~lg~~eeA~~~~~kal-------~l~P~~~~~~~~L  121 (401)
                      .+-|+|..+.+.|+|++|+++++++.       ++ |.++.+...|
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~~yl~eA~kl-t~s~~~l~SL   54 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKL-TESEQAHLSL   54 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            45566777777777777776666554       44 5666665544

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.28  E-value=2.9  Score=30.47  Aligned_cols=85  Identities=16%  Similarity=0.119  Sum_probs=52.8

Q ss_pred             HHHHHHHhhccCchhHHhhHHHHHHHH-HHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHH
Q psy4703         185 AKQINTLLKCETNEEIYLGEEDFITSI-IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLA  263 (401)
Q Consensus       185 v~~L~~ll~~~~~~e~~lA~e~fi~~i-~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~  263 (401)
                      +..+..+++ +.++.++..--..+-.+ ....++.|..+++.+++.++..|+.+|.++|..                ...
T Consensus        24 ~~~L~~~l~-d~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~~----------------~~~   86 (111)
T d1te4a_          24 FEPLLESLS-NEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE----------------RVR   86 (111)
T ss_dssp             HHHHHHGGG-CSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH----------------HHH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHhcchhhhHHHHHhhhccchhHHHHHHHHHHHHhCcc----------------chH
Confidence            444555565 55555532211111111 233477888899988999999999999988631                234


Q ss_pred             HHHHhhhcCCCCCchhHHhHHhhhh
Q psy4703         264 EACRRFLVNPARDPDIRRWAAEGLA  288 (401)
Q Consensus       264 ~~~~~~l~~~~~~~~~~~~~~egla  288 (401)
                      .....++..  .+++.|+.|++.|.
T Consensus        87 ~~L~~ll~d--~~~~vr~~A~~aL~  109 (111)
T d1te4a_          87 AAMEKLAET--GTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHTTS--CCTHHHHHHHHHGG
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHH
Confidence            445555543  36788999998874