Psyllid ID: psy4747

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
MVPTLLNEKGYFTYSRGYTGVKGNSVLFEHQICLIESVTMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYSQSQQQASQQDSPPQTQPEPSTKPPPQSHLPPSKLKPDLVAPPHSAIPTLGAQYPQRVAPPPSGHYPNPYPAHPVPIPNIHPVHAVVPPGSQYYGHHRPPPAAGSTQQTQTRSCSTTPLCHSYPGSPISTTCSTTP
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccEEEEcccccccccccccEEEccccccEEEEEEcccccccEEEcHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHccccHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHcHcHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccccHHccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mvptllnekgyftysrgytgvkgnsvLFEHQICLIesvtmpywyfdkkdirnspsfregidyeTEQRYRREGARFIIdcgtkmdlgyntmaTGVVFFHRFYmyhsfktfpryvTASCCLFLagkveetpkKCKDVIKTARMLVddkkfktfgddpreeVMTLERILLQTIKFdlqvdhpySFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYSQSqqqasqqdsppqtqpepstkpppqshlppsklkpdlvapphsaiptlgaqypqrvapppsghypnpypahpvpipnihpvhavvppgsqyyghhrpppaagstqqtqtrscsttplchsypgspisttcsttp
mvptllnekgyftysrGYTGVKGNSVLFEHQICLIESVTMPYWYFDKkdirnspsfregidyeteqryrregARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAgkveetpkkcKDVIKTarmlvddkkfktfgddpreeVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYSQSQQQASQQDSPPQTQPEPSTKPPPQSHLPPSKLKPDLVAPPHSAIPTLGAQYPQRVAPPPSGHYPNPYPAHPVPIPNIHPVHAVVPPGSQYYGHHRPPPAAGSTQQTQTRSCSTTplchsypgspisttcsttp
MVPTLLNEKGYFTYSRGYTGVKGNSVLFEHQICLIESVTMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYsqsqqqasqqdsppqtqpepstkpppqsHLPPSKLKPDLVAPPHSAIPTLGAQYPQRVApppsghypnpypahpvpipnihpvhavvppGSQYYGHHRPPPAAGstqqtqtrscsttPLCHSYPGSPISTTCSTTP
*****LNEKGYFTYSRGYTGVKGNSVLFEHQICLIESVTMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLY******************************************************************************NIHPVHAVV*************************************************
*************************************VTMPYWYFDKKDI************ETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYSQ**************************************************************************************************************************************
MVPTLLNEKGYFTYSRGYTGVKGNSVLFEHQICLIESVTMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYS******************************PSKLKPDLVAPPHSAIPTLGAQYPQRVAPPPSGHYPNPYPAHPVPIPNIHPVHAVVPPGSQYYGHH********************PLCHSYPGS**********
*VPTLLNEKGYFTYSRGYTGVKGNSVLFEHQICLIESVTMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYSQSQ************************************************************************************************************************************
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MVPTLLNEKGYFTYSRGYTGVKGNSVLFEHQICLIESVTMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYSQSQQQASQQDSPPQTQPEPSTKPPPQSHLPPSKLKPDLVAPPHSAIPTLGAQYPQRVAPPPSGHYPNPYPAHPVPIPNIHPVHAVVPPGSQYYGHHRPPPAAGSTQQTQTRSCSTTPLCHSYPGSPISTTCSTTP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query414 2.2.26 [Sep-21-2011]
O88874 554 Cyclin-K OS=Mus musculus yes N/A 0.647 0.483 0.675 1e-110
O75909 580 Cyclin-K OS=Homo sapiens yes N/A 0.632 0.451 0.689 1e-109
Q2QQS5 543 Cyclin-T1-4 OS=Oryza sati yes N/A 0.553 0.421 0.387 4e-41
Q2RAC5490 Cyclin-T1-3 OS=Oryza sati no N/A 0.657 0.555 0.356 2e-40
Q9FKE6 579 Cyclin-T1-5 OS=Arabidopsi yes N/A 0.574 0.411 0.377 1e-39
Q8GYM6 541 Cyclin-T1-4 OS=Arabidopsi no N/A 0.574 0.439 0.369 4e-38
Q9QWV9 724 Cyclin-T1 OS=Mus musculus no N/A 0.555 0.317 0.341 1e-37
O60563 726 Cyclin-T1 OS=Homo sapiens no N/A 0.555 0.316 0.337 2e-36
Q8HXN7 725 Cyclin-T1 OS=Pan troglody no N/A 0.555 0.317 0.337 2e-36
Q9XT26 727 Cyclin-T1 OS=Equus caball no N/A 0.555 0.316 0.337 2e-36
>sp|O88874|CCNK_MOUSE Cyclin-K OS=Mus musculus GN=Ccnk PE=1 SV=3 Back     alignment and function desciption
 Score =  399 bits (1024), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/274 (67%), Positives = 221/274 (80%), Gaps = 6/274 (2%)

Query: 39  TMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFH 98
           T P WY+DKKD+ ++PS  EG+D  TE RYRREGARFI D GT++ L Y+T+ATG+++FH
Sbjct: 20  TKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFH 79

Query: 99  RFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREE 158
           RFYM+HSFK FPRYVT +CCLFLAGKVEETPKKCKD+IKTAR L++D +F  FGDDP+EE
Sbjct: 80  RFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEE 139

Query: 159 VMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCL 218
           VM LERILLQTIKFDLQV+HPY FLLKYAK LKGDK K++K++QMAWTFVNDSLCTTL L
Sbjct: 140 VMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSL 199

Query: 219 QWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLY 278
           QWEPEIIAVA+MYLAG+L KFE+ +W  +   + RWWE FV+D+ +D+LEDICHQ+LDLY
Sbjct: 200 QWEPEIIAVAVMYLAGRLCKFEIQEWTSK-PMYRRWWEQFVQDVPVDVLEDICHQILDLY 258

Query: 279 SQSQQQA-----SQQDSPPQTQPEPSTKPPPQSH 307
           SQ +QQ       Q   PP  QP P     PQS 
Sbjct: 259 SQGKQQMPHHTPHQLQQPPSLQPTPQVPQGPQSQ 292
May play a role in transcriptional regulation. It is associated with an in vitro kinase activity toward both RNA polymerase II C-terminal domain and CDK2 (CAK).
Mus musculus (taxid: 10090)
>sp|O75909|CCNK_HUMAN Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2 Back     alignment and function description
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2 Back     alignment and function description
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 Back     alignment and function description
>sp|Q9QWV9|CCNT1_MOUSE Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=3 Back     alignment and function description
>sp|O60563|CCNT1_HUMAN Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1 Back     alignment and function description
>sp|Q8HXN7|CCNT1_PANTR Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XT26|CCNT1_HORSE Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
383863697410 PREDICTED: cyclin-K-like [Megachile rotu 0.816 0.824 0.634 1e-126
345495853446 PREDICTED: cyclin-K-like [Nasonia vitrip 0.809 0.751 0.638 1e-126
307185453416 Cyclin-K [Camponotus floridanus] 0.608 0.605 0.810 1e-123
332027362408 Cyclin-K [Acromyrmex echinatior] 0.608 0.617 0.810 1e-123
380025077414 PREDICTED: cyclin-K-like [Apis florea] 0.789 0.789 0.643 1e-123
48095871414 PREDICTED: cyclin-K [Apis mellifera] 0.789 0.789 0.643 1e-123
307207009414 Cyclin-K [Harpegnathos saltator] 0.608 0.608 0.806 1e-123
242020118397 Cyclin-K, putative [Pediculus humanus co 0.659 0.687 0.753 1e-122
340714363410 PREDICTED: cyclin-K-like [Bombus terrest 0.625 0.631 0.790 1e-121
350417367410 PREDICTED: cyclin-K-like [Bombus impatie 0.625 0.631 0.790 1e-121
>gi|383863697|ref|XP_003707316.1| PREDICTED: cyclin-K-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/386 (63%), Positives = 281/386 (72%), Gaps = 48/386 (12%)

Query: 40  MPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHR 99
           MP WY++KK++RN+PS ++GIDYETE RYR+EGARFIID GTKMDLGYNTMATGVV+FHR
Sbjct: 1   MPCWYYEKKELRNTPSIQDGIDYETECRYRKEGARFIIDTGTKMDLGYNTMATGVVYFHR 60

Query: 100 FYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEV 159
           FYM+HSFK FPRYVTA CCLFLAGKVEETPKKCKD+IKTA+ L+ D+KF TFG+DP+EEV
Sbjct: 61  FYMFHSFKNFPRYVTACCCLFLAGKVEETPKKCKDIIKTAKTLLTDQKFMTFGEDPKEEV 120

Query: 160 MTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQ 219
           MTLERILLQTIKFDLQV+HPYS+LLKYAK LKGDK KL+KM+QMAWTFVNDSLCTTL LQ
Sbjct: 121 MTLERILLQTIKFDLQVEHPYSYLLKYAKCLKGDKNKLQKMVQMAWTFVNDSLCTTLSLQ 180

Query: 220 WEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYS 279
           WEPEIIAVALMYLAGKLSKFEVVDW GR  KHLRWW+MFVED+TMDLLEDICHQVLDLYS
Sbjct: 181 WEPEIIAVALMYLAGKLSKFEVVDWNGRQPKHLRWWDMFVEDVTMDLLEDICHQVLDLYS 240

Query: 280 QSQQQASQQDSPPQTQPEPSTKP-------PPQSH--------LPPSKLKPDLVA----- 319
           Q+       DSPP T   PST+P       PP +          P    K +  A     
Sbjct: 241 QA-NNTKPPDSPPMT---PSTEPCRDRAIAPPPTESSSNTPNVTPGKSTKVETAAISANG 296

Query: 320 -PPHSA--------IPTLGAQYPQRVAPPPSGHYPNPYPAH--PVPIPNIHPVHAVVPPG 368
            PP  A        +PT    YP    PP + +YP  +P     VP P ++ ++ +VPP 
Sbjct: 297 CPPADATDSMKPMDVPTHFQTYPTNF-PPGNINYPPAFPPANVSVPPPPVNTMNHIVPP- 354

Query: 369 SQYYGHH-------RPPPAAGSTQQT 387
                HH       RP P A ST Q+
Sbjct: 355 ----MHHLGSSSTIRPAPPAPSTTQS 376

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345495853|ref|XP_001607256.2| PREDICTED: cyclin-K-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307185453|gb|EFN71453.1| Cyclin-K [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332027362|gb|EGI67445.1| Cyclin-K [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|380025077|ref|XP_003696306.1| PREDICTED: cyclin-K-like [Apis florea] Back     alignment and taxonomy information
>gi|48095871|ref|XP_394536.1| PREDICTED: cyclin-K [Apis mellifera] Back     alignment and taxonomy information
>gi|307207009|gb|EFN84832.1| Cyclin-K [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242020118|ref|XP_002430503.1| Cyclin-K, putative [Pediculus humanus corporis] gi|212515660|gb|EEB17765.1| Cyclin-K, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340714363|ref|XP_003395699.1| PREDICTED: cyclin-K-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350417367|ref|XP_003491388.1| PREDICTED: cyclin-K-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
FB|FBgn0025674400 CycK "Cyclin K" [Drosophila me 0.577 0.597 0.740 3.6e-103
UNIPROTKB|F1NCA1 587 CCNK "Uncharacterized protein" 0.577 0.407 0.716 5.2e-102
MGI|MGI:1276106 554 Ccnk "cyclin K" [Mus musculus 0.577 0.431 0.716 2.8e-101
RGD|1595690 554 Ccnk "cyclin K" [Rattus norveg 0.577 0.431 0.716 2.8e-101
UNIPROTKB|O75909 580 CCNK "Cyclin-K" [Homo sapiens 0.577 0.412 0.716 2.8e-101
UNIPROTKB|E1BEV0 584 CCNK "Uncharacterized protein" 0.577 0.409 0.710 4.1e-100
UNIPROTKB|G3N172 585 CCNK "Uncharacterized protein" 0.577 0.408 0.710 4.1e-100
UNIPROTKB|E2RN80 588 CCNK "Uncharacterized protein" 0.577 0.406 0.710 4.1e-100
UNIPROTKB|F1SAQ3 584 CCNK "Uncharacterized protein" 0.577 0.409 0.710 4.1e-100
ZFIN|ZDB-GENE-030131-5126 526 ccnk "cyclin K" [Danio rerio ( 0.574 0.452 0.7 4.9e-100
FB|FBgn0025674 CycK "Cyclin K" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1005 (358.8 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
 Identities = 177/239 (74%), Positives = 211/239 (88%)

Query:    40 MPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHR 99
             MP WY+DKK++R +PS  +GI +ETE+RYR+EGARFI++CGTKM LG+NTMATGVV+FHR
Sbjct:     1 MPCWYYDKKELRETPSILDGISFETERRYRKEGARFIMECGTKMGLGHNTMATGVVYFHR 60

Query:   100 FYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEV 159
             FYM+HSF++FPRYVTA CCLF AGKVEETPKKC+D+IKTAR ++ D  F +FGDDP+EEV
Sbjct:    61 FYMFHSFRSFPRYVTACCCLFFAGKVEETPKKCRDIIKTARGILTDNYFYSFGDDPKEEV 120

Query:   160 MTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQ 219
             MTLERILLQTIKFDLQV+HPY+FLLKYAK  KGD+ KL+KM+QMAW FVNDSL T +CLQ
Sbjct:   121 MTLERILLQTIKFDLQVEHPYTFLLKYAKCFKGDQQKLQKMVQMAWNFVNDSLSTVVCLQ 180

Query:   220 WEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLY 278
             WEPEIIAVAL++LA KLSKF V DW GR  +  RWW+MFV D+TM++LEDICHQVLDLY
Sbjct:   181 WEPEIIAVALIHLASKLSKFTVQDWEGRQPQQQRWWDMFVSDVTMEILEDICHQVLDLY 239
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|F1NCA1 CCNK "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1276106 Ccnk "cyclin K" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1595690 Ccnk "cyclin K" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O75909 CCNK "Cyclin-K" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEV0 CCNK "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3N172 CCNK "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RN80 CCNK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SAQ3 CCNK "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5126 ccnk "cyclin K" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O75909CCNK_HUMANNo assigned EC number0.68930.63280.4517yesN/A
O88874CCNK_MOUSENo assigned EC number0.67510.64730.4837yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 1e-24
cd0004388 cd00043, CYCLIN, Cyclin box fold 6e-13
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 8e-11
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 5e-10
TIGR00569305 TIGR00569, ccl1, cyclin ccl1 1e-08
cd0004388 cd00043, CYCLIN, Cyclin box fold 4e-07
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 9e-06
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 1e-05
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 3e-05
PRK14951 618 PRK14951, PRK14951, DNA polymerase III subunits ga 9e-05
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 1e-04
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-04
pfam03154 979 pfam03154, Atrophin-1, Atrophin-1 family 2e-04
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 5e-04
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 5e-04
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 6e-04
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 8e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 8e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.001
PRK03427 333 PRK03427, PRK03427, cell division protein ZipA; Pr 0.001
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
pfam03154 979 pfam03154, Atrophin-1, Atrophin-1 family 0.002
COG5373 931 COG5373, COG5373, Predicted membrane protein [Func 0.002
pfam07777189 pfam07777, MFMR, G-box binding protein MFMR 0.003
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  102 bits (255), Expect = 1e-24
 Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 13/185 (7%)

Query: 55  SFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVT 114
                +  E E        + I+D  T+++L    +AT ++FF RFY+ +S +    Y  
Sbjct: 31  VLEPELTLEKELNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSV 90

Query: 115 ASCCLFLAGKVEETPKKCKDVIKTARMLVDD---KKFKTFGDDPREEVMTLERILLQTIK 171
            + C++LA KVE+TP+     I        D   ++ K+     RE ++  E  LL+ + 
Sbjct: 91  VTTCVYLACKVEDTPRD----ISIESFEARDLWSEEPKSS----RERILEYEFELLEALD 142

Query: 172 FDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMY 231
           FDL V HPY +L  + K L+       K+LQ+AW  +ND+L T LCL + P IIA+A + 
Sbjct: 143 FDLHVHHPYKYLEGFLKDLQEKDKY--KLLQIAWKIINDALRTDLCLLYPPHIIALAALL 200

Query: 232 LAGKL 236
           +A ++
Sbjct: 201 IACEV 205

Length = 297
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1 Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown] Back     alignment and domain information
>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 414
KOG0834|consensus323 100.0
KOG0794|consensus264 100.0
KOG0835|consensus367 100.0
TIGR00569305 ccl1 cyclin ccl1. University). 100.0
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.96
KOG0656|consensus335 99.92
KOG0653|consensus391 99.91
KOG2496|consensus325 99.89
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.89
KOG0655|consensus408 99.88
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.85
KOG0654|consensus359 99.74
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.72
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.62
KOG1597|consensus308 99.6
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.39
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.3
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 98.99
KOG1598|consensus 521 98.86
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.41
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.4
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.31
KOG4164|consensus497 98.23
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 97.95
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.72
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.52
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 95.99
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 94.71
KOG1597|consensus308 93.83
KOG1674|consensus218 93.31
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 92.44
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 86.56
TIGR00569305 ccl1 cyclin ccl1. University). 85.99
KOG0835|consensus367 85.08
KOG0834|consensus323 82.09
KOG1675|consensus343 81.72
>KOG0834|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.8e-45  Score=359.91  Aligned_cols=244  Identities=48%  Similarity=0.849  Sum_probs=225.1

Q ss_pred             ccccCCcCHHHHh-cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhh
Q psy4747          39 TMPYWYFDKKDIR-NSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASC  117 (414)
Q Consensus        39 ~~~~W~ft~eeL~-~~pS~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~A  117 (414)
                      ....|||+++|++ ++||+++|++.+.|...|..++.||+++|.+|++++.++++|++||||||+..++++++.+.||++
T Consensus         8 ~~~~w~~s~e~~~~~tpSr~~g~~~~~E~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~s   87 (323)
T KOG0834|consen    8 ETSRWYFSKEQLEENTPSRRDGIDLKKELRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAAS   87 (323)
T ss_pred             cccccccCHHHHccCChhhccCCchhHHHHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHH
Confidence            4679999999996 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccccCCCCCHHHHHHHHhhhcccc--cccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCChh
Q psy4747         118 CLFLAGKVEETPKKCKDVIKTARMLVDDK--KFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKT  195 (414)
Q Consensus       118 CLfLA~K~EE~p~~l~~lv~v~~~~~~~~--~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~~  195 (414)
                      |||||+|+||++++++||+++++..+.+.  ...+.+++.++.|+..|++||++|+|||+|.+||.||.+|++.++.+.+
T Consensus        88 clfLAgKvEetp~kl~dIi~~s~~~~~~~~~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~  167 (323)
T KOG0834|consen   88 CLFLAGKVEETPRKLEDIIKVSYRYLNPKDLELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADEN  167 (323)
T ss_pred             HHHHHhhcccCcccHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhh
Confidence            99999999999999999999999988874  2334456789999999999999999999999999999999999999886


Q ss_pred             HHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHHHHHH
Q psy4747         196 KLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVL  275 (414)
Q Consensus       196 ~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~~~il  275 (414)
                      ....+.+.||.+++|++.+.+||.|+|..||+|||++|+++.|+..+.+..     ..||+.|..+++.++|.+++++++
T Consensus       168 ~~~~~a~~Aw~~~nD~~~t~~cL~y~p~~IAva~i~lA~~~~~~~~~~~~~-----~~w~~~~d~~vt~e~l~~i~~~~l  242 (323)
T KOG0834|consen  168 LKQPLAQAAWNFVNDSLRTTLCLQYSPHSIAVACIHLAAKLLGVELPSDTD-----KRWWREFDETVTNELLDDICHEFL  242 (323)
T ss_pred             ccccHHHHHHHHhchhheeeeeEeecCcEEEeehhhHHHHHcCCCCCCCcc-----cchhhhhcccCCHHHHHHHHHHHH
Confidence            555799999999999999999999999999999999999999997776443     289999987899999999999999


Q ss_pred             HHHhhcccccCC
Q psy4747         276 DLYSQSQQQASQ  287 (414)
Q Consensus       276 ~ly~~~~~~~~~  287 (414)
                      .+|++.......
T Consensus       243 ~~y~~~~~~~~~  254 (323)
T KOG0834|consen  243 DLYEQTPQRNHL  254 (323)
T ss_pred             HHHhhccccccc
Confidence            999987655444

>KOG0794|consensus Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0656|consensus Back     alignment and domain information
>KOG0653|consensus Back     alignment and domain information
>KOG2496|consensus Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0655|consensus Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG0654|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1598|consensus Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG4164|consensus Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>KOG1674|consensus Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>KOG0834|consensus Back     alignment and domain information
>KOG1675|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
2i53_A258 Crystal Structure Of Cyclin K Length = 258 1e-104
3tnh_B259 Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 8e-37
3mi9_B266 Crystal Structure Of Hiv-1 Tat Complexed With Human 2e-36
2pk2_A358 Cyclin Box Structure Of The P-Tefb Subunit Cyclin T 3e-36
2w2h_A264 Structural Basis Of Transcription Activation By The 4e-36
2ivx_A257 Crystal Structure Of Human Cyclin T2 At 1.8 A Resol 5e-36
3blh_B260 Crystal Structure Of Human Cdk9CYCLINT1 Length = 26 6e-36
3rgf_B285 Crystal Structure Of Human Cdk8CYCC Length = 285 2e-14
1zp2_A235 Structure Of The Mediator Subunit Cyclin C Length = 6e-08
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure 
Iteration: 1

 Score =  375 bits (962), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 172/240 (71%), Positives = 207/240 (86%), Gaps = 1/240 (0%)
Query: 39  TMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFH 98
           T P WY+DKKD+ ++PS  EG+D  TE RYRREGARFI D GT++ L Y+T+ATG+++FH
Sbjct: 11  TKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFH 70
Query: 99  RFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREE 158
           RFYM+HSFK FPRYVT +CCLFLAGKVEETPKKCKD+IKTAR L++D +F  FGDDP+EE
Sbjct: 71  RFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEE 130
Query: 159 VMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCL 218
           VM LERILLQTIKFDLQV+HPY FLLKYAK LKGDK K++K++QMAWTFVNDSLCTTL L
Sbjct: 131 VMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSL 190
Query: 219 QWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLY 278
           QWEPEIIAVA+MYLAG+L KFE+ +W  +   + RWWE FV+D+ +D+LEDICHQ+LDLY
Sbjct: 191 QWEPEIIAVAVMYLAGRLCKFEIQEWTSK-PMYRRWWEQFVQDVPVDVLEDICHQILDLY 249
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 Back     alignment and structure
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 266 Back     alignment and structure
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1 Derived From A Fusion Complex With Eiav Tat Length = 358 Back     alignment and structure
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin T1-Tat-Tar Rna Complex From Eiav Length = 264 Back     alignment and structure
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution (Casp Target) Length = 257 Back     alignment and structure
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 Length = 260 Back     alignment and structure
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC Length = 285 Back     alignment and structure
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 1e-94
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 1e-78
2ivx_A257 Cyclin-T2; transcription regulation, cell division 3e-75
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 2e-68
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 8e-66
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 6e-60
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 5e-13
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 6e-13
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 9e-13
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 7e-12
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-11
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-09
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 3e-09
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-05
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 1e-04
1ais_B200 TFB TFIIB, protein (transcription initiation facto 2e-04
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
 Score =  283 bits (725), Expect = 1e-94
 Identities = 176/249 (70%), Positives = 211/249 (84%), Gaps = 1/249 (0%)

Query: 39  TMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFH 98
           T P WY+DKKD+ ++PS  EG+D  TE RYRREGARFI D GT++ L Y+T+ATG+++FH
Sbjct: 11  TKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFH 70

Query: 99  RFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREE 158
           RFYM+HSFK FPRYVT +CCLFLAGKVEETPKKCKD+IKTAR L++D +F  FGDDP+EE
Sbjct: 71  RFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEE 130

Query: 159 VMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCL 218
           VM LERILLQTIKFDLQV+HPY FLLKYAK LKGDK K++K++QMAWTFVNDSLCTTL L
Sbjct: 131 VMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSL 190

Query: 219 QWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLY 278
           QWEPEIIAVA+MYLAG+L KFE+ +W  +     RWWE FV+D+ +D+LEDICHQ+LDLY
Sbjct: 191 QWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYR-RWWEQFVQDVPVDVLEDICHQILDLY 249

Query: 279 SQSQQQASQ 287
           SQ +QQ   
Sbjct: 250 SQGKQQMPH 258
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.97
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.97
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.95
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.9
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.77
1ais_B200 TFB TFIIB, protein (transcription initiation facto 97.94
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.73
1c9b_A207 General transcription factor IIB; protein-DNA comp 97.4
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 95.02
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 94.89
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 93.42
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 93.4
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 92.35
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 92.03
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 90.91
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 90.89
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 90.79
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 90.74
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 90.4
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 90.01
2ivx_A257 Cyclin-T2; transcription regulation, cell division 89.02
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 88.42
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 88.39
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 87.02
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 86.51
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
Probab=100.00  E-value=3e-48  Score=372.98  Aligned_cols=244  Identities=72%  Similarity=1.279  Sum_probs=227.6

Q ss_pred             ccccCCcCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhh
Q psy4747          39 TMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCC  118 (414)
Q Consensus        39 ~~~~W~ft~eeL~~~pS~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~AC  118 (414)
                      ...+|||+++|++++||+.+|++.+.|..+|..+++||.++|.+|+|+++|+++|++|||||+.++++++.++++||+||
T Consensus        11 ~~~~w~~~~~el~~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac   90 (258)
T 2i53_A           11 TKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACC   90 (258)
T ss_dssp             CSSSCCCCGGGGGGCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred             hccCCccCHHHHHhCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccCCCCCHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCChhHHH
Q psy4747         119 LFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLE  198 (414)
Q Consensus       119 LfLA~K~EE~p~~l~~lv~v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~~~~~  198 (414)
                      ||||||+||.++++++|+++++.++.++.|..++++.+++|++||+.||++|+|++.+++|++||.+|++.++.+.+..+
T Consensus        91 L~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~  170 (258)
T 2i53_A           91 LFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQ  170 (258)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHH
T ss_pred             HHHHHccccccccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHH
Confidence            99999999999999999999887777767766666678999999999999999999999999999999999998876566


Q ss_pred             HHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHHHHHHHHH
Q psy4747         199 KMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLY  278 (414)
Q Consensus       199 ~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~~~il~ly  278 (414)
                      ++.+.|++++++++.++.++.|+|+.||+|||++|++++|.++++|.... ....||+.|..++++++|.+|+++|+++|
T Consensus       171 ~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~~~~l~~~~~~il~ly  249 (258)
T 2i53_A          171 KLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKP-MYRRWWEQFVQDVPVDVLEDICHQILDLY  249 (258)
T ss_dssp             HHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSC-CSSCGGGGTSSSCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCC-CcccHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999998652 45689999988999999999999999999


Q ss_pred             hhccc
Q psy4747         279 SQSQQ  283 (414)
Q Consensus       279 ~~~~~  283 (414)
                      .+.+.
T Consensus       250 ~~~~~  254 (258)
T 2i53_A          250 SQGKQ  254 (258)
T ss_dssp             SSSCC
T ss_pred             hcccc
Confidence            87643
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 414
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 3e-48
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 8e-43
d2i53a2110 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens 6e-39
d2ivxa2113 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapien 6e-36
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 1e-26
d1jkwa2126 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo 3e-16
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 2e-11
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 5e-11
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 2e-10
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 6e-10
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 3e-07
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (403), Expect = 3e-48
 Identities = 100/138 (72%), Positives = 119/138 (86%)

Query: 39  TMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFH 98
           T P WY+DKKD+ ++PS  EG+D  TE RYRREGARFI D GT++ L Y+T+ATG+++FH
Sbjct: 7   TKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFH 66

Query: 99  RFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREE 158
           RFYM+HSFK FPRYVT +CCLFLAGKVEETPKKCKD+IKTAR L++D +F  FGDDP+EE
Sbjct: 67  RFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEE 126

Query: 159 VMTLERILLQTIKFDLQV 176
           VM LERILLQTIKFDLQV
Sbjct: 127 VMVLERILLQTIKFDLQV 144
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.97
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.9
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.82
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.81
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.8
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.79
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.78
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.78
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.77
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.1
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 98.92
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.91
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.79
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.66
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.35
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.26
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.22
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.78
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.72
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.97
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 93.87
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 93.52
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 93.44
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 93.31
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.04
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 92.62
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 92.58
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 92.47
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 92.42
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 92.3
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-31  Score=232.35  Aligned_cols=137  Identities=72%  Similarity=1.273  Sum_probs=129.3

Q ss_pred             cccCCcCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhh
Q psy4747          40 MPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCL  119 (414)
Q Consensus        40 ~~~W~ft~eeL~~~pS~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACL  119 (414)
                      ..+|||+++|++++||+.+|++.+.|..+|..+++||.++|.+|+|+..|+++|++|||||++++++.++++++||+|||
T Consensus         8 ~~~w~fs~~~l~~tps~~~~i~~~~E~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~~lva~acl   87 (144)
T d2i53a1           8 KPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCL   87 (144)
T ss_dssp             SSSCCCCGGGGGGCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred             CCCCCcCHHHHHhChhhhcCCChHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccCCCCCHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccc
Q psy4747         120 FLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQV  176 (414)
Q Consensus       120 fLA~K~EE~p~~l~~lv~v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v  176 (414)
                      |||||+||.++++++++.++..+..+......+...+++|++||+.||++|||||+|
T Consensus        88 ~LA~K~eE~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V  144 (144)
T d2i53a1          88 FLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQV  144 (144)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             HHHHHhhcccccHHHHHHHHHHHhhhhhhhhhchhhHHHHHHHHHHHHHHCCCeeeC
Confidence            999999999999999999998887766665666678999999999999999999985
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure