Conserved Domains and Related Protein Families
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
141
KOG4659|consensus 1899
99.78 PF13715 88
DUF4480: Domain of unknown function (DUF4480)
99.7 PF13620 82
CarboxypepD_reg: Carboxypeptidase regulatory-like
99.46 cd03863 375
M14_CPD_II The second carboxypeptidase (CP)-like d
99.38 cd06245 363
M14_CPD_III The third carboxypeptidase (CP)-like d
99.25 cd03858 374
M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub
99.21 cd03864 392
M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als
99.13 cd03867 395
M14_CPZ Peptidase M14-like domain of carboxypeptid
99.11 cd03868 372
M14_CPD_I The first carboxypeptidase (CP)-like dom
99.07 cd03865 402
M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C
99.04 cd03866 376
M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM
98.92 PF08400 134
phage_tail_N: Prophage tail fibre N-terminal; Inte
98.14 cd03869 405
M14_CPX_like Peptidase M14-like domain of carboxyp
97.98 PF07210 85
DUF1416: Protein of unknown function (DUF1416); In
97.74 KOG2649|consensus 500
97.64 PRK15036 137
hydroxyisourate hydrolase; Provisional
97.57 cd00421 146
intradiol_dioxygenase Intradiol dioxygenases catal
97.43 cd03461 277
1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ca
97.36 TIGR02423 193
protocat_alph protocatechuate 3,4-dioxygenase, alp
97.34 cd03458 256
Catechol_intradiol_dioxygenases Catechol intradiol
97.22 TIGR02438 281
catachol_actin catechol 1,2-dioxygenase, Actinobac
97.22 PF00775 183
Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th
97.17 cd03462 247
1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs)
97.14 cd03459 158
3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD)
97.11 TIGR02439 285
catechol_proteo catechol 1,2-dioxygenase, proteoba
97.11 PF02369 100
Big_1: Bacterial Ig-like domain (group 1); InterPr
97.11 TIGR02465 246
chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb
97.08 TIGR02422 220
protocat_beta protocatechuate 3,4-dioxygenase, bet
97.07 cd03460 282
1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyz
97.02 cd03464 220
3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-
96.95 cd03463 185
3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4
96.95 smart00634 92
BID_1 Bacterial Ig-like domain (group 1).
96.86 PF10670 215
DUF4198: Domain of unknown function (DUF4198)
96.52 COG3485 226
PcaH Protocatechuate 3,4-dioxygenase beta subunit
96.49 KOG1948|consensus 1165
96.39 PRK15310 895
fimbrial outer membrane usher protein TcfC; Provis
95.44 PF11974 97
MG1: Alpha-2-macroglobulin MG1 domain; InterPro: I
95.27 PF01190 97
Pollen_Ole_e_I: Pollen proteins Ole e I like; Inte
95.17 cd03457 188
intradiol_dioxygenase_like Intradiol dioxygenase s
94.69 COG5266 264
CbiK ABC-type Co2+ transport system, periplasmic c
92.43 PF12985 104
DUF3869: Domain of unknown function (DUF3869); Int
92.22 PF14686 95
fn3_3: Polysaccharide lyase family 4, domain II; P
91.46 PF08308 71
PEGA: PEGA domain; InterPro: IPR013229 This domain
90.81 TIGR02962 112
hdxy_isourate hydroxyisourate hydrolase. Members o
90.53 PF01060 80
DUF290: Transthyretin-like family; InterPro: IPR00
90.07 PF05738 70
Cna_B: Cna protein B-type domain; InterPro: IPR008
89.27 cd05822 112
TLP_HIUase HIUase (5-hydroxyisourate hydrolase) ca
87.74 KOG1948|consensus 1165
84.31 PF10577 807
UPF0560: Uncharacterised protein family UPF0560; I
82.4 PF12866 222
DUF3823: Protein of unknown function (DUF3823); In
80.55
>KOG4659|consensus
Back Hide alignment and domain information
Probab=99.78 E-value=8.9e-19 Score=169.52 Aligned_cols=126 Identities=36% Similarity=0.549 Sum_probs=114.5
Q ss_pred CcCCcceEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCccE
Q psy4833 2 TDDELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQI 81 (141)
Q Consensus 2 ~~d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~ 81 (141)
+||++|.++|||+|+-.+|.||.||+|+...++ . ++|+|+.||.|+|.|++|.++||+|-+..|.+|+++|++|||++
T Consensus 45 ~fne~~~~vIrgrvv~~~~~pLVGVrVS~~~~~-~-yfTlTR~DG~FDL~vnGg~svtLqF~R~pF~~qkr~v~vpwnq~ 122 (1899)
T KOG4659|consen 45 QFNENRISVIRGRVVWGGGVPLVGVRVSDAAHP-L-YFTLTREDGYFDLTVNGGRSVTLQFLRTPFQSQKRSVFVPWNQI 122 (1899)
T ss_pred hhccccceEEeccEeecCCcceEEEEeeccccc-c-eEEEEecCceEEEEEcccceEEEEEccCCCcccceeEEeChhhE
Confidence 589999999999999999999999999999999 7 49999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEecCCC------------ccceeccccccCcCCCCCcccccccCCCCCCcce
Q psy4833 82 VVLPPVKMQLSDAS------------DIFREVASGVTPSYAPKGNSDLQHYGPRSSNKTV 129 (141)
Q Consensus 82 ~~~~~v~m~~~d~~------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (141)
+++++|+|+..+.. ..+..|.|.|.|+++..|-.+|-+.+++--..-|
T Consensus 123 i~id~vvm~~~~~~~~~~~~~~~C~~~~~~~pdpvvissw~~tf~ga~pdr~~Iv~esqv 182 (1899)
T KOG4659|consen 123 IHIDDVVMYRQEGGSPPAPARAKCSPTLRRIPDPVVISSWQYTFDGACPDRTSIVVESQV 182 (1899)
T ss_pred EEEEeEEEEeecCCCCCCCCCCccChhhccCCCcEEecCcccccCCcCCCCcccccchhh
Confidence 99999999977653 2345678899999999999999999997654433
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Back Show alignment and domain information
Probab=99.70 E-value=1.6e-16 Score=108.74 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=68.2
Q ss_pred EEEEEEECCC-CCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCccEEEeCCeE
Q psy4833 10 VVRGQVLSVQ-GLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVLPPVK 88 (141)
Q Consensus 10 ~IrG~V~D~~-GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~~~v~ 88 (141)
+|+|+|+|++ |+||+||+|.+++.. . + ++||.+|+|.|.++.+. .+|.||++||+++++.+....+....+ .+.
T Consensus 1 ti~G~V~d~~t~~pl~~a~V~~~~~~-~-~-~~Td~~G~F~i~~~~g~-~~l~is~~Gy~~~~~~i~~~~~~~~~~-~i~ 75 (88)
T PF13715_consen 1 TISGKVVDSDTGEPLPGATVYLKNTK-K-G-TVTDENGRFSIKLPEGD-YTLKISYIGYETKTITISVNSNKNTNL-NIY 75 (88)
T ss_pred CEEEEEEECCCCCCccCeEEEEeCCc-c-e-EEECCCeEEEEEEcCCC-eEEEEEEeCEEEEEEEEEecCCCEEEE-EEE
Confidence 5899999987 999999999999987 4 4 99999999999988665 579999999999999999987765555 688
Q ss_pred EEecC
Q psy4833 89 MQLSD 93 (141)
Q Consensus 89 m~~~d 93 (141)
|.+..
T Consensus 76 L~~~~ 80 (88)
T PF13715_consen 76 LEPKS 80 (88)
T ss_pred EeeCc
Confidence 87653
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A
Back Show alignment and domain information
Probab=99.46 E-value=7.1e-13 Score=88.90 Aligned_cols=79 Identities=24% Similarity=0.409 Sum_probs=58.1
Q ss_pred EEEEEEECCCCCeeeeEEEEeccCCC-eeeceEecCCceEEEE-ecCCCcEEEEEEecCccceEE-EEEccCccEEEeCC
Q psy4833 10 VVRGQVLSVQGLGITGIRVSVDKDSG-RFGFTLTRGGGWFDML-VNGGGAVTLQFQRSPYRPQTR-TVFIPWNQIVVLPP 86 (141)
Q Consensus 10 ~IrG~V~D~~GePL~GVsV~Vkgt~~-~~G~TiTD~DG~FsL~-V~~g~~~tL~FSyiGY~sqe~-~V~~~~n~~~~~~~ 86 (141)
+|+|+|+|++|+||+||+|.+....+ ....+.||.+|+|.|. ++.| .++|.+++.||.+... .+.+..++...+ +
T Consensus 1 tI~G~V~d~~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g-~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~-~ 78 (82)
T PF13620_consen 1 TISGTVTDATGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPG-TYTLRVSAPGYQPQTQENVTVTAGQTTTV-D 78 (82)
T ss_dssp -EEEEEEETTSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SE-EEEEEEEBTTEE-EEEEEEEESSSSEEE---
T ss_pred CEEEEEEcCCCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCE-eEEEEEEECCcceEEEEEEEEeCCCEEEE-E
Confidence 58999999999999999999983211 1234999999999998 7765 5689999999999998 699998887776 7
Q ss_pred eEEE
Q psy4833 87 VKMQ 90 (141)
Q Consensus 87 v~m~ 90 (141)
+.|.
T Consensus 79 i~L~ 82 (82)
T PF13620_consen 79 ITLE 82 (82)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7764
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3
Back Show alignment and domain information
Probab=99.38 E-value=1.6e-12 Score=112.91 Aligned_cols=77 Identities=26% Similarity=0.260 Sum_probs=66.0
Q ss_pred eEEEEEEEECC-CCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCccEEEeCC
Q psy4833 8 VAVVRGQVLSV-QGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVLPP 86 (141)
Q Consensus 8 ~~~IrG~V~D~-~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~~~ 86 (141)
...|+|+|+|+ +|+||+||+|+|+|.. . | ++||.||+|.+.++.|. .+|++|++||+++++.|.+..++...+ +
T Consensus 296 ~~gI~G~V~D~~~g~pl~~AtV~V~g~~-~-~-~~Td~~G~f~~~l~pG~-ytl~vs~~GY~~~~~~v~V~~~~~~~~-~ 370 (375)
T cd03863 296 HRGVRGFVLDATDGRGILNATISVADIN-H-P-VTTYKDGDYWRLLVPGT-YKVTASARGYDPVTKTVEVDSKGAVQV-N 370 (375)
T ss_pred cCeEEEEEEeCCCCCCCCCeEEEEecCc-C-c-eEECCCccEEEccCCee-EEEEEEEcCcccEEEEEEEcCCCcEEE-E
Confidence 45799999996 7999999999999987 4 5 99999999999988775 689999999999999999987766554 4
Q ss_pred eEE
Q psy4833 87 VKM 89 (141)
Q Consensus 87 v~m 89 (141)
+.|
T Consensus 371 ~~L 373 (375)
T cd03863 371 FTL 373 (375)
T ss_pred EEe
Confidence 444
4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3
Back Show alignment and domain information
Probab=99.25 E-value=3.6e-11 Score=103.94 Aligned_cols=76 Identities=18% Similarity=0.359 Sum_probs=66.3
Q ss_pred eEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCccEEEeCCe
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVLPPV 87 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~~~v 87 (141)
-..|+|+|+|.+|+||+||+|.|+|.. + ++||.+|.|.+.++.|. .+|.+|++||++++++|.+..++...+ ++
T Consensus 286 ~~gI~G~V~d~~g~pi~~A~V~v~g~~---~-~~T~~~G~y~~~L~pG~-y~v~vs~~Gy~~~~~~V~v~~~~~~~~-~f 359 (363)
T cd06245 286 HKGVHGVVTDKAGKPISGATIVLNGGH---R-VYTKEGGYFHVLLAPGQ-HNINVIAEGYQQEHLPVVVSHDEASSV-KI 359 (363)
T ss_pred CcEEEEEEEcCCCCCccceEEEEeCCC---c-eEeCCCcEEEEecCCce-EEEEEEEeCceeEEEEEEEcCCCeEEE-EE
Confidence 468999999999999999999999864 4 89999999999987665 589999999999999999988777665 55
Q ss_pred EE
Q psy4833 88 KM 89 (141)
Q Consensus 88 ~m 89 (141)
.|
T Consensus 360 ~L 361 (363)
T cd06245 360 VL 361 (363)
T ss_pred Ee
Confidence 55
4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs)
Back Show alignment and domain information
Probab=99.21 E-value=6.5e-11 Score=101.22 Aligned_cols=72 Identities=26% Similarity=0.350 Sum_probs=62.3
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccC-ccEEEe
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPW-NQIVVL 84 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~-n~~~~~ 84 (141)
..|+|+|+|.+|+||+||+|.++|.. . + ++||.+|+|.+.++.| ..+|.+|++||+++++++.+.. ++...+
T Consensus 298 ~~i~G~V~d~~g~pl~~A~V~i~~~~-~-~-~~Td~~G~f~~~l~~G-~y~l~vs~~Gy~~~~~~v~v~~~g~~~~~ 370 (374)
T cd03858 298 RGIKGFVRDANGNPIANATISVEGIN-H-D-VTTAEDGDYWRLLLPG-TYNVTASAPGYEPQTKSVVVPNDNSAVVV 370 (374)
T ss_pred CceEEEEECCCCCccCCeEEEEecce-e-e-eEECCCceEEEecCCE-eEEEEEEEcCcceEEEEEEEecCCceEEE
Confidence 38999999999999999999999887 4 5 9999999999998755 4689999999999999888876 555544
The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3
Back Show alignment and domain information
Probab=99.13 E-value=2.5e-10 Score=99.93 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=60.8
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEE-ecCCCcEEEEEEecCccceEEEEEccCccEEEe
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVL 84 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~ 84 (141)
..|+|+|+|.+|+||+||+|.|+|.. . + ++||.+|.| +. ++.| ..+|.+|++||++++++|.+..++...+
T Consensus 316 ~gI~G~V~D~~g~pi~~A~V~v~g~~-~-~-~~T~~~G~y-~r~l~pG-~Y~l~vs~~Gy~~~t~~v~V~~~~~~~~ 387 (392)
T cd03864 316 QGIKGMVTDENNNGIANAVISVSGIS-H-D-VTSGTLGDY-FRLLLPG-TYTVTASAPGYQPSTVTVTVGPAEATLV 387 (392)
T ss_pred CeEEEEEECCCCCccCCeEEEEECCc-c-c-eEECCCCcE-EecCCCe-eEEEEEEEcCceeEEEEEEEcCCCcEEE
Confidence 47999999999999999999999997 4 5 999999999 54 5555 4689999999999999999887665443
4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)
Back Show alignment and domain information
Probab=99.11 E-value=3.2e-10 Score=98.76 Aligned_cols=66 Identities=24% Similarity=0.230 Sum_probs=58.8
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccC
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPW 78 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~ 78 (141)
..|+|+|+|++|+||+||+|.++|+. . + +.||.+|.|...++.|. .+|.+|++||++++.+|.++.
T Consensus 318 ~~i~G~V~D~~g~pi~~A~V~v~g~~-~-~-~~Td~~G~y~~~l~~G~-y~l~vs~~Gy~~~~~~v~v~~ 383 (395)
T cd03867 318 RGIKGFVKDKDGNPIKGARISVRGIR-H-D-ITTAEDGDYWRLLPPGI-HIVSAQAPGYTKVMKRVTLPA 383 (395)
T ss_pred ceeEEEEEcCCCCccCCeEEEEeccc-c-c-eEECCCceEEEecCCCc-EEEEEEecCeeeEEEEEEeCC
Confidence 47999999999999999999999987 3 5 99999999987777665 579999999999999999864
The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3
Back Show alignment and domain information
Probab=99.07 E-value=4.5e-10 Score=96.56 Aligned_cols=73 Identities=22% Similarity=0.167 Sum_probs=61.2
Q ss_pred eEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEE-EEccCccEEEe
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRT-VFIPWNQIVVL 84 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~-V~~~~n~~~~~ 84 (141)
...|+|+|+|.+|+||+||+|.+++.. . + ++||.+|.|.+.++.| ..+|.+|+.||++++++ +.+..++...+
T Consensus 295 ~~~i~G~V~d~~g~pv~~A~V~v~~~~-~-~-~~td~~G~y~~~l~~G-~Y~l~vs~~Gf~~~~~~~v~v~~g~~~~~ 368 (372)
T cd03868 295 HIGVKGFVRDASGNPIEDATIMVAGID-H-N-VTTAKFGDYWRLLLPG-TYTITAVAPGYEPSTVTDVVVKEGEATSV 368 (372)
T ss_pred CCceEEEEEcCCCCcCCCcEEEEEecc-c-c-eEeCCCceEEecCCCE-EEEEEEEecCCCceEEeeEEEcCCCeEEE
Confidence 346899999999999999999999987 4 5 9999999998777756 46899999999999886 45766665554
4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3
Back Show alignment and domain information
Probab=99.04 E-value=6.1e-10 Score=98.09 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=62.1
Q ss_pred EEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCccEEEe
Q psy4833 10 VVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVL 84 (141)
Q Consensus 10 ~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~ 84 (141)
-|+|+|+|.+|+||+||+|+|+|.. . + +.||.+|.|.+.++.|. .+|.+|+.||++++..|.++.++...+
T Consensus 327 gI~G~V~D~~g~pI~~AtV~V~g~~-~-~-~~T~~~G~Y~~~L~pG~-Ytv~vsa~Gy~~~~~~V~V~~~~~~~v 397 (402)
T cd03865 327 GVKGFVKDLQGNPIANATISVEGID-H-D-ITSAKDGDYWRLLAPGN-YKLTASAPGYLAVVKKVAVPYSPAVRV 397 (402)
T ss_pred ceEEEEECCCCCcCCCeEEEEEcCc-c-c-cEECCCeeEEECCCCEE-EEEEEEecCcccEEEEEEEcCCCcEEE
Confidence 4999999999999999999999987 4 5 99999999999777664 689999999999999999987765443
4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)
Back Show alignment and domain information
Probab=98.92 E-value=4.8e-09 Score=91.14 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=58.9
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCc
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWN 79 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n 79 (141)
.-|+|+|+|.+|+||+||+|.|.|.. ....+.||.+|.|.+.+..|. .+|.+|..||+++..++.++.+
T Consensus 295 ~gI~G~V~D~~g~pi~~A~V~v~g~~-~~~~~~T~~~G~y~~~l~pG~-Y~v~vsa~Gy~~~~~~v~v~~~ 363 (376)
T cd03866 295 LGVKGQVFDSNGNPIPNAIVEVKGRK-HICPYRTNVNGEYFLLLLPGK-YMINVTAPGFKTVITNVIIPYN 363 (376)
T ss_pred CceEEEEECCCCCccCCeEEEEEcCC-ceeEEEECCCceEEEecCCee-EEEEEEeCCcceEEEEEEeCCC
Confidence 46999999999999999999999886 311268999999999877665 5799999999999999988754
The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein
Back Show alignment and domain information
Probab=98.14 E-value=1.9e-05 Score=61.04 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=55.4
Q ss_pred eEEEEEEEECCCCCeeeeEEEEeccCCC-------eeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCcc
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSVDKDSG-------RFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQ 80 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~Vkgt~~-------~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~ 80 (141)
.++|+|...|..|+|++|++|.++--.+ ......||.+|.|+|.+..|.. .+.+...|..
T Consensus 2 sV~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y-------------~V~l~~~g~~ 68 (134)
T PF08400_consen 2 SVKISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVY-------------RVTLKVEGRP 68 (134)
T ss_pred eEEEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeE-------------EEEEEECCCC
Confidence 3689999999999999999999874321 1244689999999999987753 3445566666
Q ss_pred EEEeCCeEEEecCC
Q psy4833 81 IVVLPPVKMQLSDA 94 (141)
Q Consensus 81 ~~~~~~v~m~~~d~ 94 (141)
..++.+|..+.-+.
T Consensus 69 ~~~vG~I~V~~dS~ 82 (134)
T PF08400_consen 69 PVYVGDITVYEDSK 82 (134)
T ss_pred ceeEEEEEEecCCC
Confidence 67777887775544
The characteristics of the protein distribution suggest prophage matches.
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)
Back Show alignment and domain information
Probab=97.98 E-value=2e-05 Score=69.89 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=55.8
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCc
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWN 79 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n 79 (141)
.=|+|.|+|.+|.||++|+|+|+|.. . . ..|..+|.|-=-+.+|. .++.+|.-||.++.+++.++.+
T Consensus 329 ~GikG~V~d~~g~~i~~a~i~v~g~~-~-~-v~t~~~GdywRll~pG~-y~v~~~a~gy~~~~~~~~v~~~ 395 (405)
T cd03869 329 RGIKGVVRDKTGKGIPNAIISVEGIN-H-D-IRTASDGDYWRLLNPGE-YRVTAHAEGYTSSTKNCEVGYE 395 (405)
T ss_pred cCceEEEECCCCCcCCCcEEEEecCc-c-c-eeeCCCCceEEecCCce-EEEEEEecCCCcccEEEEEcCC
Confidence 35899999999999999999999976 3 3 77788998866655564 5799999999999998888754
The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length
Back Show alignment and domain information
Probab=97.74 E-value=0.00037 Score=50.49 Aligned_cols=67 Identities=24% Similarity=0.307 Sum_probs=51.1
Q ss_pred cCCcceEEEEEEEECCCCCeeeeEEEEeccCCCee-eceEecCCceEEEEecCCCcEEEE-EEecCccceE
Q psy4833 3 DDELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRF-GFTLTRGGGWFDMLVNGGGAVTLQ-FQRSPYRPQT 71 (141)
Q Consensus 3 ~d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~-G~TiTD~DG~FsL~V~~g~~~tL~-FSyiGY~sqe 71 (141)
.|.+...+|+|+|+ .+|+|++|+-|+++..+++| +.+.|.++|.|.+-..+|.= +|+ .+.-|-....
T Consensus 2 vd~~ke~VItG~V~-~~G~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFfaapG~W-tvRal~~~g~~d~~ 70 (85)
T PF07210_consen 2 VDVEKETVITGRVT-RDGEPVGGAYVRLLDSSGEFTAEVVTSATGDFRFFAAPGSW-TVRALSRGGNGDAM 70 (85)
T ss_pred cCccceEEEEEEEe-cCCcCCCCeEEEEEcCCCCeEEEEEecCCccEEEEeCCCce-EEEEEccCCCCceE
Confidence 57788899999999 99999999999998765433 56899999999998765643 343 3555555333
Members of this family appear to be Actinomycete specific. The function of this family is unknown.
>KOG2649|consensus
Back Show alignment and domain information
Probab=97.64 E-value=0.00024 Score=64.74 Aligned_cols=89 Identities=25% Similarity=0.249 Sum_probs=68.5
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCccEEEeCCeE
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVLPPVK 88 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~~~v~ 88 (141)
.-|+|.|+|.+|+||+.|+|+|+|-+ - . +.|-.+|.|=--+++|.. .|.++.-||.+...+|.++. .--..=++.
T Consensus 378 ~GIkG~V~D~~G~~I~NA~IsV~gin-H-d-v~T~~~GDYWRLL~PG~y-~vta~A~Gy~~~tk~v~V~~-~~a~~~df~ 452 (500)
T KOG2649|consen 378 RGIKGLVFDDTGNPIANATISVDGIN-H-D-VTTAKEGDYWRLLPPGKY-IITASAEGYDPVTKTVTVPP-DRAARVNFT 452 (500)
T ss_pred hccceeEEcCCCCccCceEEEEecCc-C-c-eeecCCCceEEeeCCcce-EEEEecCCCcceeeEEEeCC-CCccceeEE
Confidence 46899999999999999999999887 3 3 888889999877776764 69999999999999999886 333333566
Q ss_pred EEecCCCccceecc
Q psy4833 89 MQLSDASDIFREVA 102 (141)
Q Consensus 89 m~~~d~~~~~~~~~ 102 (141)
|.....++.+.+..
T Consensus 453 L~~~~~~~~~r~~~ 466 (500)
T KOG2649|consen 453 LQRSIPQPPFRELL 466 (500)
T ss_pred EecCCCcchhhHHH
Confidence 66555444444333
>PRK15036 hydroxyisourate hydrolase; Provisional
Back Show alignment and domain information
Probab=97.57 E-value=0.00012 Score=56.27 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=45.7
Q ss_pred EEEEEEEECC-CCCeeeeEEEEeccCCC----eeeceEecCCceEEEEe----cCCCcEEEEEEecCccc
Q psy4833 9 AVVRGQVLSV-QGLGITGIRVSVDKDSG----RFGFTLTRGGGWFDMLV----NGGGAVTLQFQRSPYRP 69 (141)
Q Consensus 9 ~~IrG~V~D~-~GePL~GVsV~Vkgt~~----~~G~TiTD~DG~FsL~V----~~g~~~tL~FSyiGY~s 69 (141)
..|+|.|+|. .|.|++||.|.+.+... .++.+.||+||+|.... -..+...|+|.--+|=.
T Consensus 27 ~~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf~ 96 (137)
T PRK15036 27 NILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFK 96 (137)
T ss_pred CCeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhhh
Confidence 3699999996 79999999999976431 12458999999998621 11245689998888765
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates
Back Show alignment and domain information
Probab=97.43 E-value=0.0016 Score=49.80 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=51.1
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEeccCCC-----------------eeeceEecCCceEEEE-ecCCCc-------EE
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDKDSG-----------------RFGFTLTRGGGWFDML-VNGGGA-------VT 59 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~-----------------~~G~TiTD~DG~FsL~-V~~g~~-------~t 59 (141)
+.....|+|+|+|.+|.|++||.|.+-.... ..|...||++|+|.+. +.++.. +-
T Consensus 8 ~G~~l~l~G~V~D~~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~~R~~HiH 87 (146)
T cd00421 8 PGEPLTLTGTVLDGDGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPIGRPPHIH 87 (146)
T ss_pred CCCEEEEEEEEECCCCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCCCCCCEEE
Confidence 4567899999999999999999998843221 1367899999999997 333321 23
Q ss_pred EEEEecCc-cceEEEEEccC
Q psy4833 60 LQFQRSPY-RPQTRTVFIPW 78 (141)
Q Consensus 60 L~FSyiGY-~sqe~~V~~~~ 78 (141)
+.+.--|| ....-+++.+.
T Consensus 88 ~~V~~~g~~~~l~Tqlyf~~ 107 (146)
T cd00421 88 FKVFAPGYNRRLTTQLYFPG 107 (146)
T ss_pred EEEECCCccCcEEEEEEeCC
Confidence 55555666 55555555553
This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates
Back Show alignment and domain information
Probab=97.36 E-value=0.002 Score=54.85 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=55.0
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEecc----------------CCCeeeceEecCCceEEEE-ecCCC-----------
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDK----------------DSGRFGFTLTRGGGWFDML-VNGGG----------- 56 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkg----------------t~~~~G~TiTD~DG~FsL~-V~~g~----------- 56 (141)
+.....|+|+|+|.+|.||+||.|-+=. .. ..|...||+||+|.+. +.++.
T Consensus 117 ~G~~l~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~-lRGr~~Td~~G~y~F~Ti~Pg~Ypip~dGp~g~ 195 (277)
T cd03461 117 DGEPCFVHGRVTDTDGKPLPGATVDVWQADPNGLYDVQDPDQPEFN-LRGKFRTDEDGRYAFRTLRPTPYPIPTDGPVGK 195 (277)
T ss_pred CCCEEEEEEEEEcCCCCCcCCcEEEEECcCCCCCcCCCCCCCCCCC-CeEEEEeCCCCCEEEEEECCCCcCCCCCCcHHH
Confidence 4556899999999999999999998821 11 2367899999999996 32221
Q ss_pred -------------cEEEEEEecCccceEEEEEccCcc
Q psy4833 57 -------------AVTLQFQRSPYRPQTRTVFIPWNQ 80 (141)
Q Consensus 57 -------------~~tL~FSyiGY~sqe~~V~~~~n~ 80 (141)
.+-+.++.-||+...-+++.+...
T Consensus 196 lL~~~grh~~RpaHIHf~V~a~G~~~L~Tqlyf~~d~ 232 (277)
T cd03461 196 LLKAMGRHPMRPAHIHFMVTAPGYRTLVTQIFDSGDP 232 (277)
T ss_pred HHHhhhccCCCCCeEEEEEEcCCcCceEEeEecCCCc
Confidence 345667778887777777777554
1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit
Back Show alignment and domain information
Probab=97.34 E-value=0.0031 Score=50.98 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=52.2
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEecc------------------CCC--eeeceEecCCceEEEE-ecCCC--------
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDK------------------DSG--RFGFTLTRGGGWFDML-VNGGG-------- 56 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkg------------------t~~--~~G~TiTD~DG~FsL~-V~~g~-------- 56 (141)
...+.|+|+|+|.+|+||+||.|-+=. .++ ..|...||++|+|.+. +..+.
T Consensus 37 G~~l~l~G~V~D~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~~~g~~ 116 (193)
T TIGR02423 37 GERIRLEGRVLDGDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPDRDGVL 116 (193)
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCCCCCCC
Confidence 456899999999999999999998721 000 1255789999999996 33332
Q ss_pred ---cEEEEEEecCc-cceEEEEEccCccEE
Q psy4833 57 ---AVTLQFQRSPY-RPQTRTVFIPWNQIV 82 (141)
Q Consensus 57 ---~~tL~FSyiGY-~sqe~~V~~~~n~~~ 82 (141)
.+-+.+..-|| +...-+++.+.....
T Consensus 117 R~~HiH~~V~a~G~~~~LtTqlYf~~~~~~ 146 (193)
T TIGR02423 117 QAPHINVSVFARGINRRLYTRLYFDDEAAA 146 (193)
T ss_pred cCCeEEEEEECCCcccceEEEEEcCCCccc
Confidence 23355556676 556556666655444
This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols
Back Show alignment and domain information
Probab=97.22 E-value=0.0037 Score=52.76 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=53.4
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEeccCC---------------CeeeceEecCCceEEEE-ecCC-------------
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDKDS---------------GRFGFTLTRGGGWFDML-VNGG------------- 55 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~---------------~~~G~TiTD~DG~FsL~-V~~g------------- 55 (141)
+.....|+|+|+|.+|+||+||.|-+=... +..|...||+||+|.+. +.++
T Consensus 101 ~G~~l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypip~dGp~g~l 180 (256)
T cd03458 101 DGEPLFVHGTVTDTDGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPIPPDGPTGEL 180 (256)
T ss_pred CCcEEEEEEEEEcCCCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccCCCCCcHHHH
Confidence 456789999999999999999999882110 02367899999999996 3332
Q ss_pred -----------CcEEEEEEecCccceEEEEEccCcc
Q psy4833 56 -----------GAVTLQFQRSPYRPQTRTVFIPWNQ 80 (141)
Q Consensus 56 -----------~~~tL~FSyiGY~sqe~~V~~~~n~ 80 (141)
..+-+.++.-||+...-+++.+...
T Consensus 181 L~~~grh~~RpaHIHf~V~a~G~~~LtTqlyf~~d~ 216 (256)
T cd03458 181 LEALGRHPWRPAHIHFMVSAPGYRTLTTQIYFEGDP 216 (256)
T ss_pred HHhcccCCCCCCeEEEEEECCCcceeeEEEecCCCc
Confidence 2234666777776666666666444
Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial
Back Show alignment and domain information
Probab=97.22 E-value=0.0032 Score=53.88 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=53.8
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEe--ccCCC-------------eeeceEecCCceEEEE-ecCC------------
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSV--DKDSG-------------RFGFTLTRGGGWFDML-VNGG------------ 55 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~V--kgt~~-------------~~G~TiTD~DG~FsL~-V~~g------------ 55 (141)
++.....|+|+|+|.+|+||+||.|.+ .+..+ ..|...||+||+|.+. +.++
T Consensus 128 ~~G~pl~v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~YpiP~dGp~G~ 207 (281)
T TIGR02438 128 EAGTPLVFSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQIPTDGPTGK 207 (281)
T ss_pred CCCCEEEEEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCCCCCCchHH
Confidence 345568999999999999999999999 11111 1256789999999996 3222
Q ss_pred ------------CcEEEEEEecCccceEEEEEccCccE
Q psy4833 56 ------------GAVTLQFQRSPYRPQTRTVFIPWNQI 81 (141)
Q Consensus 56 ------------~~~tL~FSyiGY~sqe~~V~~~~n~~ 81 (141)
..+-+.++.-||+...-+++.+...+
T Consensus 208 lL~~~Grh~~RpaHIHf~V~a~G~~~LtTqiyf~gd~~ 245 (281)
T TIGR02438 208 FIAAAGGHPWRPAHLHLKVSAPGHELITTQLYFKGGEH 245 (281)
T ss_pred HHHhcccCCCCCCEEEEEEECCCcceEEEeEecCCCCC
Confidence 22345567777776666666664443
Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases
Back Show alignment and domain information
Probab=97.17 E-value=0.0061 Score=48.70 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=36.4
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEec-----cC------------CCeeeceEecCCceEEEE
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVD-----KD------------SGRFGFTLTRGGGWFDML 51 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vk-----gt------------~~~~G~TiTD~DG~FsL~ 51 (141)
.+.....|+|+|+|.+|+||+||.|-|= |. .+..|...||++|+|.+.
T Consensus 25 ~~G~~l~l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~ 89 (183)
T PF00775_consen 25 APGEPLVLHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFR 89 (183)
T ss_dssp SSS-EEEEEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEE
T ss_pred CCCCEEEEEEEEECCCCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEE
Confidence 3556889999999999999999999982 10 012377899999999986
Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups
Back Show alignment and domain information
Probab=97.14 E-value=0.0045 Score=52.03 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=54.8
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEeccCC---------------CeeeceEecCCceEEEE-ecCC-------------
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDKDS---------------GRFGFTLTRGGGWFDML-VNGG------------- 55 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~---------------~~~G~TiTD~DG~FsL~-V~~g------------- 55 (141)
+.....|+|+|+|.+|+||+||.|-+=... +..|...||+||+|.+. +.++
T Consensus 96 ~G~~l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~YpiP~dGp~g~l 175 (247)
T cd03462 96 DHKPLLFRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQIPNDGPTGAL 175 (247)
T ss_pred CCCEEEEEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcCCCCCCcHHHH
Confidence 445689999999999999999999883111 01256789999999996 3322
Q ss_pred -----------CcEEEEEEecCccceEEEEEccCccE
Q psy4833 56 -----------GAVTLQFQRSPYRPQTRTVFIPWNQI 81 (141)
Q Consensus 56 -----------~~~tL~FSyiGY~sqe~~V~~~~n~~ 81 (141)
..+-+.++.-||+...-+++.+...+
T Consensus 176 L~~~grh~~RpaHIHf~V~a~G~~~L~Tqlyf~~d~~ 212 (247)
T cd03462 176 LEAMGGHSWRPAHVHFKVRADGYETLTTQLYFEGGEW 212 (247)
T ss_pred HHhcccCCCCCCeEEEEEECCCcCceEEEEecCCCCC
Confidence 23456777788877666777664444
This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate
Back Show alignment and domain information
Probab=97.11 E-value=0.0066 Score=47.56 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=52.1
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEeccC------------------CC--eeeceEecCCceEEEE-ecCCC-------
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDKD------------------SG--RFGFTLTRGGGWFDML-VNGGG------- 56 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkgt------------------~~--~~G~TiTD~DG~FsL~-V~~g~------- 56 (141)
+...+.|+|+|+|.+|+||+||.|.+=.. ++ ..|...||+||+|.+. +.++.
T Consensus 12 ~G~~l~l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~p~~~ 91 (158)
T cd03459 12 IGERIILEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPWRNGA 91 (158)
T ss_pred CCcEEEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCCCCCC
Confidence 34578999999999999999999987211 00 1255789999999996 33221
Q ss_pred ----cEEEEEEecCc-cceEEEEEccC
Q psy4833 57 ----AVTLQFQRSPY-RPQTRTVFIPW 78 (141)
Q Consensus 57 ----~~tL~FSyiGY-~sqe~~V~~~~ 78 (141)
.+-+.+.--|| +...-+++.+.
T Consensus 92 ~R~~HIH~~V~~~g~~~~L~Tqlyf~~ 118 (158)
T cd03459 92 WRAPHIHVSVFARGLLERLVTRLYFPG 118 (158)
T ss_pred CcCCEEEEEEECCCcccceEEeEecCC
Confidence 13356666788 66666777775
3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial
Back Show alignment and domain information
Probab=97.11 E-value=0.0056 Score=52.41 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=56.0
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEeccC-------------C--CeeeceEecCCceEEEE-ecCC-------------
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDKD-------------S--GRFGFTLTRGGGWFDML-VNGG------------- 55 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkgt-------------~--~~~G~TiTD~DG~FsL~-V~~g------------- 55 (141)
+.....|+|+|+|.+|+||+||.|-+=.. + +..|...||+||+|.+. +.++
T Consensus 125 ~G~pl~v~G~V~D~~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~YpiP~dGp~g~l 204 (285)
T TIGR02439 125 PGETLFLHGQVTDADGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGCPPQGPTQQL 204 (285)
T ss_pred CCcEEEEEEEEECCCCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcCCCCCcHHHH
Confidence 35678999999999999999999988211 0 02267899999999996 3222
Q ss_pred -----------CcEEEEEEecCccceEEEEEccCccEEE
Q psy4833 56 -----------GAVTLQFQRSPYRPQTRTVFIPWNQIVV 83 (141)
Q Consensus 56 -----------~~~tL~FSyiGY~sqe~~V~~~~n~~~~ 83 (141)
..+-+.++.-||+...-+++.+...++.
T Consensus 205 L~~~grh~~RpaHIHf~V~a~G~~~LtTQiyf~gd~~l~ 243 (285)
T TIGR02439 205 LNLLGRHGNRPAHVHFFVSAPGHRKLTTQINIEGDPYLW 243 (285)
T ss_pred HHhccCCCCCCCeEEEEEecCCCCeeEEEEecCCCCCcc
Confidence 2345667777887777777766554443
Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins
Back Show alignment and domain information
Probab=97.11 E-value=0.0047 Score=44.25 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=44.3
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEe--ccCCCeee----ceEecCCceEEEEecC--CCcEEEEEEecCccceEEE
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSV--DKDSGRFG----FTLTRGGGWFDMLVNG--GGAVTLQFQRSPYRPQTRT 73 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~V--kgt~~~~G----~TiTD~DG~FsL~V~~--g~~~tL~FSyiGY~sqe~~ 73 (141)
|.....+|+-+|.|.+|.||+|+.|.+ ......+. ...||.+|.+.+.+.+ .+..++..+.-|.......
T Consensus 20 ~g~~~~tltatV~D~~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~~~~~~~ 97 (100)
T PF02369_consen 20 DGSDTNTLTATVTDANGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGGSTSVTS 97 (100)
T ss_dssp SSSS-EEEEEEEEETTSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTEEEEEEE
T ss_pred CCcCcEEEEEEEEcCCCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCcceeEEe
Confidence 456678899999999999999999999 32221111 2589999999998753 2334566666665544433
Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase
Back Show alignment and domain information
Probab=97.08 E-value=0.0064 Score=51.03 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=54.1
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccCC---------------CeeeceEecCCceEEEE-ecCC--------------
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKDS---------------GRFGFTLTRGGGWFDML-VNGG-------------- 55 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt~---------------~~~G~TiTD~DG~FsL~-V~~g-------------- 55 (141)
.-...|+|+|+|.+|+||+||.|-|=... +..|...||+||+|.+. +.++
T Consensus 96 G~~l~v~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~YpiP~dgp~g~lL 175 (246)
T TIGR02465 96 HKPLLIRGTVRDLSGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQIPDAGPTGALL 175 (246)
T ss_pred CcEEEEEEEEEcCCCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCCCCCCchHHHH
Confidence 45689999999999999999999882110 01266889999999996 3222
Q ss_pred ----------CcEEEEEEecCccceEEEEEccCccEE
Q psy4833 56 ----------GAVTLQFQRSPYRPQTRTVFIPWNQIV 82 (141)
Q Consensus 56 ----------~~~tL~FSyiGY~sqe~~V~~~~n~~~ 82 (141)
..+-+.++.-||+...-+++.+....+
T Consensus 176 ~~~grh~~RpaHIH~~V~a~G~~~L~Tqiyf~~d~~l 212 (246)
T TIGR02465 176 ETMGRHSWRPAHVHYKVRADGYRPLTTQAYFEGGPYI 212 (246)
T ss_pred HhcccCCCCCCeEEEEEECCCcCceEEeEecCCCccc
Confidence 234566677788766666666644433
Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit
Back Show alignment and domain information
Probab=97.07 E-value=0.006 Score=50.41 Aligned_cols=75 Identities=17% Similarity=0.343 Sum_probs=50.5
Q ss_pred ceEEEEEEEECCCCCeeeeEEEEeccC------------------CC--eeeceEecCCceEEEE-ecCCC---------
Q psy4833 7 RVAVVRGQVLSVQGLGITGIRVSVDKD------------------SG--RFGFTLTRGGGWFDML-VNGGG--------- 56 (141)
Q Consensus 7 r~~~IrG~V~D~~GePL~GVsV~Vkgt------------------~~--~~G~TiTD~DG~FsL~-V~~g~--------- 56 (141)
..+.|+|+|+|.+|+||+||.|.|=.. ++ .+|...||.||+|.+. +..+.
T Consensus 59 ~~i~l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~p~~~~~ 138 (220)
T TIGR02422 59 ERIIVHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPWGNHHNA 138 (220)
T ss_pred CEEEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccCCCCCCC
Confidence 458999999999999999999987211 00 1367889999999996 33332
Q ss_pred ----cEEEEEEecCc-cceEEEEEccCccE
Q psy4833 57 ----AVTLQFQRSPY-RPQTRTVFIPWNQI 81 (141)
Q Consensus 57 ----~~tL~FSyiGY-~sqe~~V~~~~n~~ 81 (141)
.+-+.+..-|| ....-+++.+....
T Consensus 139 ~R~pHIH~~V~~~g~~~~L~TqlYF~dd~~ 168 (220)
T TIGR02422 139 WRPAHIHFSLFGTSFAQRLITQMYFEGDPL 168 (220)
T ss_pred CcCCeEEEEEECCCCccceEEeEECCCCcc
Confidence 22344455666 35555566665443
This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate
Back Show alignment and domain information
Probab=97.02 E-value=0.0076 Score=51.55 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=55.2
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEeccC-------------C--CeeeceEecCCceEEEE-ecCC-------------
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDKD-------------S--GRFGFTLTRGGGWFDML-VNGG------------- 55 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkgt-------------~--~~~G~TiTD~DG~FsL~-V~~g------------- 55 (141)
+.....|+|+|+|.+|+||+||.|-|=.. + +..|...||++|+|.+. +.++
T Consensus 121 ~Gepl~l~G~V~D~~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~YpiP~dGp~g~l 200 (282)
T cd03460 121 DGETLVMHGTVTDTDGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGVPPGGPTQQL 200 (282)
T ss_pred CCCEEEEEEEEECCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcCCCCCcHHHH
Confidence 35678999999999999999999988211 0 02266899999999996 3222
Q ss_pred -----------CcEEEEEEecCccceEEEEEccCccEEE
Q psy4833 56 -----------GAVTLQFQRSPYRPQTRTVFIPWNQIVV 83 (141)
Q Consensus 56 -----------~~~tL~FSyiGY~sqe~~V~~~~n~~~~ 83 (141)
..+-+.++.-||+...-+++.+...++.
T Consensus 201 L~~~grh~~RpaHIHf~V~a~G~~~LtTqlyf~gd~~~~ 239 (282)
T cd03460 201 LNALGRHGNRPAHIHFFVSAPGHRKLTTQINIEGDPYIW 239 (282)
T ss_pred HHhhcCCCCCCCeEEEEEecCCcCceEEEEecCCCCccc
Confidence 2244666777777766667766554443
1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit
Back Show alignment and domain information
Probab=96.95 E-value=0.01 Score=49.03 Aligned_cols=75 Identities=17% Similarity=0.331 Sum_probs=50.3
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccC------------------CC--eeeceEecCCceEEEE-ecCCC--------
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKD------------------SG--RFGFTLTRGGGWFDML-VNGGG-------- 56 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt------------------~~--~~G~TiTD~DG~FsL~-V~~g~-------- 56 (141)
...+.|+|+|+|.+|+||+||.|.|=.. ++ ..|...||+||+|.+. +..+.
T Consensus 63 G~~i~l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~p~~r~ 142 (220)
T cd03464 63 GERIIVHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPWGNHPN 142 (220)
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccCCCCCC
Confidence 4458999999999999999999987211 00 1356799999999996 33332
Q ss_pred -----cEEEEEEecCcc-ceEEEEEccCcc
Q psy4833 57 -----AVTLQFQRSPYR-PQTRTVFIPWNQ 80 (141)
Q Consensus 57 -----~~tL~FSyiGY~-sqe~~V~~~~n~ 80 (141)
.+-+.++.-||. ...-+++.+...
T Consensus 143 ~~RppHIH~~V~a~G~~~~L~TqlYF~dd~ 172 (220)
T cd03464 143 AWRPAHIHFSLFGPSFATRLVTQMYFPGDP 172 (220)
T ss_pred CCcCCeEEEEEECCCccCceEEeEECCCCc
Confidence 223444566765 455556666444
3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit
Back Show alignment and domain information
Probab=96.95 E-value=0.011 Score=47.64 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=51.2
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccC-----------------CC--eeeceEecCCceEEEE-ecCCC---------
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKD-----------------SG--RFGFTLTRGGGWFDML-VNGGG--------- 56 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt-----------------~~--~~G~TiTD~DG~FsL~-V~~g~--------- 56 (141)
.....|+|+|+|.+|+||+||.|-|=.. ++ ..|...||+||+|.+. +..+.
T Consensus 34 G~~l~l~G~V~D~~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~~~g~~R 113 (185)
T cd03463 34 GERITLEGRVYDGDGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPGRDGAGQ 113 (185)
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCCCCCCCc
Confidence 4678999999999999999999987211 10 1145789999999996 32221
Q ss_pred --cEEEEEEecCc-cceEEEEEccC
Q psy4833 57 --AVTLQFQRSPY-RPQTRTVFIPW 78 (141)
Q Consensus 57 --~~tL~FSyiGY-~sqe~~V~~~~ 78 (141)
.+-+.+..-|| +...-+++.+.
T Consensus 114 ~~HIH~~V~~~g~~~~L~Tqlyf~~ 138 (185)
T cd03463 114 APHINVWVFARGLLKHLFTRIYFPD 138 (185)
T ss_pred CCeEEEEEECCCcccceEEeEecCC
Confidence 13356666777 66666777765
3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
>smart00634 BID_1 Bacterial Ig-like domain (group 1)
Back Show alignment and domain information
Probab=96.86 E-value=0.01 Score=41.47 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=48.9
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCCe-----eeceEecCCceEEEEecC--CCcEEEEEEecCccceEE
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSGR-----FGFTLTRGGGWFDMLVNG--GGAVTLQFQRSPYRPQTR 72 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~-----~G~TiTD~DG~FsL~V~~--g~~~tL~FSyiGY~sqe~ 72 (141)
|......|+=+|+|++|.|++|+.|.+.-.... -+...||.+|+..+.+.+ .+.+++..+.-|..+++.
T Consensus 15 dg~d~~~i~v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~~~~~ 90 (92)
T smart00634 15 NGSDAITLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGSSSVK 90 (92)
T ss_pred cCcccEEEEEEEECCCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCCcceee
Confidence 445677899999999999999988887633200 023579999999998753 345567777777665543
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Back Show alignment and domain information
Probab=96.52 E-value=0.012 Score=45.31 Aligned_cols=54 Identities=19% Similarity=0.133 Sum_probs=39.3
Q ss_pred EEEEEEECCCCCeeeeEEEEeccCCCe------eeceEecCCceEEEEecCCCcEEEEEEe
Q psy4833 10 VVRGQVLSVQGLGITGIRVSVDKDSGR------FGFTLTRGGGWFDMLVNGGGAVTLQFQR 64 (141)
Q Consensus 10 ~IrG~V~D~~GePL~GVsV~Vkgt~~~------~G~TiTD~DG~FsL~V~~g~~~tL~FSy 64 (141)
.++.+|+ -+|+||+|+.|.+-..... .....||++|++.|.++..+...|..++
T Consensus 152 ~~~~~vl-~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 152 PLPFQVL-FDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRASH 211 (215)
T ss_pred EEEEEEE-ECCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEEEE
Confidence 4677887 7899999999998544210 1238899999999998755554565554
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=96.49 E-value=0.0064 Score=50.60 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=49.1
Q ss_pred ceEEEEEEEECCCCCeeeeEEEEec-----------cCC--------CeeeceEecCCceEEEE-ecCC------C----
Q psy4833 7 RVAVVRGQVLSVQGLGITGIRVSVD-----------KDS--------GRFGFTLTRGGGWFDML-VNGG------G---- 56 (141)
Q Consensus 7 r~~~IrG~V~D~~GePL~GVsV~Vk-----------gt~--------~~~G~TiTD~DG~FsL~-V~~g------~---- 56 (141)
..+.|+|+|+|.+|.||+||-|-|= ..+ +..|.++||.+|+|.+. +.++ .
T Consensus 71 e~i~l~G~VlD~~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~~~~~~~ 150 (226)
T COG3485 71 ERILLEGRVLDGNGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWRNGGPMW 150 (226)
T ss_pred ceEEEEEEEECCCCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCCCCCCcC
Confidence 5789999999999999999999871 110 01267999999999996 2222 1
Q ss_pred ---cEEEEEEecCccc-eEEEEEccCc
Q psy4833 57 ---AVTLQFQRSPYRP-QTRTVFIPWN 79 (141)
Q Consensus 57 ---~~tL~FSyiGY~s-qe~~V~~~~n 79 (141)
.+.+.++--|+.. .+-.++++..
T Consensus 151 R~aHih~~v~~~g~~~~L~TqlYf~dd 177 (226)
T COG3485 151 RPAHIHFSVFARGINTRLVTQLYFPDD 177 (226)
T ss_pred ccceeEEEEeCCcccceEEEEEecCCC
Confidence 3456666666633 3444555544
>KOG1948|consensus
Back Show alignment and domain information
Probab=96.39 E-value=0.014 Score=57.21 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=45.4
Q ss_pred EEEEEEEECC-CCCeeeeEEEEeccCCCeeeceEecCCceEEEEe-cCCCcEEEEEE--ecCccceEEEEEc
Q psy4833 9 AVVRGQVLSV-QGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLV-NGGGAVTLQFQ--RSPYRPQTRTVFI 76 (141)
Q Consensus 9 ~~IrG~V~D~-~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V-~~g~~~tL~FS--yiGY~sqe~~V~~ 76 (141)
..|+|+|++. +|.||.||-|.|.|.. + .-||++|.|.|.- -..+.++|... ..-|.+...++..
T Consensus 316 fSvtGRVl~g~~g~~l~gvvvlvngk~---~-~kTdaqGyykLen~~t~gtytI~a~kehlqFstv~~kv~p 383 (1165)
T KOG1948|consen 316 FSVTGRVLVGSKGLPLSGVVVLVNGKS---G-GKTDAQGYYKLENLKTDGTYTITAKKEHLQFSTVHAKVKP 383 (1165)
T ss_pred EEeeeeEEeCCCCCCccceEEEEcCcc---c-ceEcccceEEeeeeeccCcEEEEEeccceeeeeEEEEecC
Confidence 3789999996 8999999999999887 4 8999999999974 22333455443 3334444444443
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Back Show alignment and domain information
Probab=95.44 E-value=0.056 Score=52.65 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=52.2
Q ss_pred eEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCcc-ceEEEEEccCccEEEeCC
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYR-PQTRTVFIPWNQIVVLPP 86 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~-sqe~~V~~~~n~~~~~~~ 86 (141)
+.++-|++.|++|.||.++. |+++. + +.||+||.|+|.++.... +|-+-.=+=. .=+..|.=..+.+.++.+
T Consensus 785 ~~~yiGr~~~~~G~~l~~a~--IlN~~---~-~~td~~GgF~~d~d~~~~-~L~ll~~~~~~~C~L~v~k~R~~i~~VGd 857 (895)
T PRK15310 785 SRLYVGRVLDKDGRPLLDAQ--PLNYP---F-LSLGPSGRFSLQSEHKES-SLWLLSKNRILRCPMSVHKRRDVMQVVGD 857 (895)
T ss_pred EEEEEEEEECCCCCCcccce--eecCc---c-ceecCCCCEEEEcccCCc-eEEEEeCCcEEEcccchhhhcceEEEEEe
Confidence 34478999999999999987 56676 6 999999999999985543 4533322111 112233333444557788
Q ss_pred eEEEec
Q psy4833 87 VKMQLS 92 (141)
Q Consensus 87 v~m~~~ 92 (141)
|.-.+.
T Consensus 858 V~C~~~ 863 (895)
T PRK15310 858 VRCELS 863 (895)
T ss_pred EEeccC
Confidence 877655
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin []
Back Show alignment and domain information
Probab=95.27 E-value=0.024 Score=40.74 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=30.7
Q ss_pred EEC-CCCCeeeeEEEEecc-CCC-eeeceEecCCceEEEEec
Q psy4833 15 VLS-VQGLGITGIRVSVDK-DSG-RFGFTLTRGGGWFDMLVN 53 (141)
Q Consensus 15 V~D-~~GePL~GVsV~Vkg-t~~-~~G~TiTD~DG~FsL~V~ 53 (141)
|.| .+|+|++||.|.+-+ ..+ .++...||++|...|...
T Consensus 19 v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~ 60 (97)
T PF11974_consen 19 VTSLSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDST 60 (97)
T ss_pred EeeCCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCC
Confidence 455 579999999999965 321 346678999999999876
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms
Back Show alignment and domain information
Probab=95.17 E-value=0.044 Score=38.64 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=27.4
Q ss_pred CCeeeeEEEEeccCC-----CeeeceEecCCceEEEEecCC
Q psy4833 20 GLGITGIRVSVDKDS-----GRFGFTLTRGGGWFDMLVNGG 55 (141)
Q Consensus 20 GePL~GVsV~Vkgt~-----~~~G~TiTD~DG~FsL~V~~g 55 (141)
..||+||.|.+.=.. .......||.+|.|.|.++..
T Consensus 18 ~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l~~~ 58 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIELPSD 58 (97)
T ss_pred CccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEecCc
Confidence 579999999995111 023558999999999999853
A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup
Back Show alignment and domain information
Probab=94.69 E-value=0.1 Score=42.02 Aligned_cols=47 Identities=15% Similarity=-0.053 Sum_probs=35.4
Q ss_pred CcceEEEEEEEECC-CCCeeeeEEEEeccC----------------------CCeeeceEecCCceEEEE
Q psy4833 5 ELRVAVVRGQVLSV-QGLGITGIRVSVDKD----------------------SGRFGFTLTRGGGWFDML 51 (141)
Q Consensus 5 ~~r~~~IrG~V~D~-~GePL~GVsV~Vkgt----------------------~~~~G~TiTD~DG~FsL~ 51 (141)
+--..+|+|+|+|. +++||+||.|-+=.. ....|...||++|+|++.
T Consensus 23 ~G~pl~l~g~V~D~~~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~ 92 (188)
T cd03457 23 PGVPLTLDLQVVDVATCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFT 92 (188)
T ss_pred CCCEEEEEEEEEeCCCCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEE
Confidence 34467999999995 699999999987210 002266889999999996
Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=92.43 E-value=0.22 Score=42.61 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=31.7
Q ss_pred EEEEEEECCCCCeeeeEEEEec-------c----CCC----eeeceEecCCceEEEEec
Q psy4833 10 VVRGQVLSVQGLGITGIRVSVD-------K----DSG----RFGFTLTRGGGWFDMLVN 53 (141)
Q Consensus 10 ~IrG~V~D~~GePL~GVsV~Vk-------g----t~~----~~G~TiTD~DG~FsL~V~ 53 (141)
.++|+|+|. |.||++|+|-+. + +.+ .+- --||.+|.|++...
T Consensus 173 ~f~~~vl~~-GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~-~~TD~kG~~~fip~ 229 (264)
T COG5266 173 VFRGKVLDN-GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALV-QFTDDKGEVSFIPL 229 (264)
T ss_pred eEEEEEEEC-CccCCCcEEEEEEecccccccccccCCCCCcceE-EEcCCCceEEEEEc
Confidence 689999998 999999999887 1 110 112 46899999999744
>PF12985 DUF3869: Domain of unknown function (DUF3869); InterPro: IPR024620 This functionally uncharacterised domain is found in bacterial sequences, including the N-terminal region of a putative pore-forming toxin (YP_001301288
Back Show alignment and domain information
Probab=92.22 E-value=0.75 Score=34.52 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=39.5
Q ss_pred ceEEEEEEEECC-CCCeee-eEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEcc
Q psy4833 7 RVAVVRGQVLSV-QGLGIT-GIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIP 77 (141)
Q Consensus 7 r~~~IrG~V~D~-~GePL~-GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~ 77 (141)
-..+|.|.|+|. +|++|. |+.+.+.+.. ||.+.-.. ..+.-|.-||.+.+++|.++
T Consensus 20 A~~tI~~tV~da~tG~~vt~~a~vti~~~~----------~~~~A~~a-----~~vtas~~~y~~~~~tV~vp 77 (104)
T PF12985_consen 20 AKYTIAGTVYDAETGEDVTTTATVTISAGS----------DGTLAAKA-----VTVTASKDGYMTGSVTVNVP 77 (104)
T ss_dssp -EEEEEEEEEETTTTEE-CGCSEEEETTCC----------CCCE--EC-----CEEEEEECTCEEEEEEEEE-
T ss_pred CEEEEEEEEEecCCCCeeeccceEEEccCC----------Cccccccc-----EEEEEEccCCeeeEEEEEeh
Confidence 356999999996 899998 8888886443 55555322 23555899999999999988
1) from Bacteroides vulgatus ATCC 8482.; PDB: 3G3L_A 3KOG_A.
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A
Back Show alignment and domain information
Probab=91.46 E-value=1.9 Score=31.06 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=23.9
Q ss_pred EEEEEEECCCC---Cee-eeEEEEec-------cCCCeeeceEecCCceEEEE-ecCCCcEEE
Q psy4833 10 VVRGQVLSVQG---LGI-TGIRVSVD-------KDSGRFGFTLTRGGGWFDML-VNGGGAVTL 60 (141)
Q Consensus 10 ~IrG~V~D~~G---ePL-~GVsV~Vk-------gt~~~~G~TiTD~DG~FsL~-V~~g~~~tL 60 (141)
.|+|+|...+| .|. ..+.|-+. +..-.| .+-||.+|+|+|. |.+|. ..|
T Consensus 4 ~VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~q~~~yqY-wt~td~~G~Fti~~V~pGt-Y~L 64 (95)
T PF14686_consen 4 SVSGRLTLSDGVTNPPAGANAVVGLAPPGDFQQNKGYQY-WTRTDSDGNFTIPNVRPGT-YRL 64 (95)
T ss_dssp EEEEEEE---SS--TT--S-EEEEEE--------SS-EE-EEE--TTSEEE---B-SEE-EEE
T ss_pred EEEEEEEEccCcccCccceeEEEEeeeccccccCCCCcE-EEEeCCCCcEEeCCeeCcE-eEE
Confidence 68999987666 333 34555554 332122 3889999999997 55564 444
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins
Back Show alignment and domain information
Probab=90.81 E-value=0.99 Score=29.61 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=38.8
Q ss_pred eeEEEEeccCCCeeeceEecCCceEEEE-ecCCCcEEEEEEecCccceEEEEEccCccEEEe
Q psy4833 24 TGIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVL 84 (141)
Q Consensus 24 ~GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~ 84 (141)
.||.|.+.|.. .| ..-..+. ++.|. .+|++..-||++.+..+.+..++...+
T Consensus 11 ~gA~V~vdg~~--~G------~tp~~~~~l~~G~-~~v~v~~~Gy~~~~~~v~v~~~~~~~v 63 (71)
T PF08308_consen 11 SGAEVYVDGKY--IG------TTPLTLKDLPPGE-HTVTVEKPGYEPYTKTVTVKPGETTTV 63 (71)
T ss_pred CCCEEEECCEE--ec------cCcceeeecCCcc-EEEEEEECCCeeEEEEEEECCCCEEEE
Confidence 48899998865 35 2233555 66564 589999999999999999997776654
It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase
Back Show alignment and domain information
Probab=90.53 E-value=0.43 Score=35.68 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=40.2
Q ss_pred EEEEEECC-CCCeeeeEEEEeccCCC----eeeceEecCCceEEEEec-----CCCcEEEEEEecCccc
Q psy4833 11 VRGQVLSV-QGLGITGIRVSVDKDSG----RFGFTLTRGGGWFDMLVN-----GGGAVTLQFQRSPYRP 69 (141)
Q Consensus 11 IrG~V~D~-~GePL~GVsV~Vkgt~~----~~G~TiTD~DG~FsL~V~-----~g~~~tL~FSyiGY~s 69 (141)
|+=.|+|. .|.|-+||.|.+..-.+ .++...||+||+..-... ..+...|+|.--.|=.
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf~ 71 (112)
T TIGR02962 3 LSTHVLDTTSGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYFA 71 (112)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhhh
Confidence 56679995 79999999999964221 234588999999973111 1245678887655543
Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []
Back Show alignment and domain information
Probab=90.07 E-value=0.56 Score=32.31 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=30.8
Q ss_pred EEEEECCCCCeeeeEEEEeccCCC-----eeeceEecCCceEEEEecCC
Q psy4833 12 RGQVLSVQGLGITGIRVSVDKDSG-----RFGFTLTRGGGWFDMLVNGG 55 (141)
Q Consensus 12 rG~V~D~~GePL~GVsV~Vkgt~~-----~~G~TiTD~DG~FsL~V~~g 55 (141)
+|+++= +|+|+.+|.|++-.... .++.+.||.+|+|.|.-...
T Consensus 1 ~G~L~C-~~~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~~~ 48 (80)
T PF01060_consen 1 KGQLMC-GGKPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGSTN 48 (80)
T ss_pred CeEEEe-CCccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEEcc
Confidence 355542 48999999998843321 34669999999999996533
The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains
Back Show alignment and domain information
Probab=89.27 E-value=3 Score=26.86 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=31.8
Q ss_pred eeeEEEEeccCCCee-ec--eEecCCceEEEE-ecCCCcEEEEEEe--cCccce
Q psy4833 23 ITGIRVSVDKDSGRF-GF--TLTRGGGWFDML-VNGGGAVTLQFQR--SPYRPQ 70 (141)
Q Consensus 23 L~GVsV~Vkgt~~~~-G~--TiTD~DG~FsL~-V~~g~~~tL~FSy--iGY~sq 70 (141)
|+||.+.+....+.. .. ..||.||.|.+. ++.|. ..|.... -||...
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~-Y~l~E~~aP~GY~~~ 53 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGT-YTLKETKAPDGYQLD 53 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEE-EEEEEEETTTTEEEE
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeE-EEEEEEECCCCCEEC
Confidence 689999997654221 21 579999999997 55565 5677666 677643
The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU)
Back Show alignment and domain information
Probab=87.74 E-value=1 Score=33.62 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=39.7
Q ss_pred EEEEEECC-CCCeeeeEEEEeccCCC----eeeceEecCCceEEEEecC-----CCcEEEEEEecCcc
Q psy4833 11 VRGQVLSV-QGLGITGIRVSVDKDSG----RFGFTLTRGGGWFDMLVNG-----GGAVTLQFQRSPYR 68 (141)
Q Consensus 11 IrG~V~D~-~GePL~GVsV~Vkgt~~----~~G~TiTD~DG~FsL~V~~-----g~~~tL~FSyiGY~ 68 (141)
|+=.|+|. .|.|-+|+.|.+-.-.. .++...||+||+..-.... .+...|+|-=-.|=
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf 70 (112)
T cd05822 3 LSTHVLDTATGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAYF 70 (112)
T ss_pred ceeEEEeCCCCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhhh
Confidence 45578995 79999999999854321 2466899999999753321 24457887654553
HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
>KOG1948|consensus
Back Show alignment and domain information
Probab=84.31 E-value=2.3 Score=42.43 Aligned_cols=48 Identities=29% Similarity=0.443 Sum_probs=38.5
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEE-ecCCC
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGG 56 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~ 56 (141)
..|+|+|+-+-|-..+||.|..+........|.|+.+|.|.+. +.+|.
T Consensus 119 Fsv~GkVlgaaggGpagV~velrs~e~~iast~T~~~Gky~f~~iiPG~ 167 (1165)
T KOG1948|consen 119 FSVRGKVLGAAGGGPAGVLVELRSQEDPIASTKTEDGGKYEFRNIIPGK 167 (1165)
T ss_pred eeEeeEEeeccCCCcccceeecccccCcceeeEecCCCeEEEEecCCCc
Confidence 4699999998888999999999876222457999999999997 54453
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function
Back Show alignment and domain information
Probab=82.40 E-value=11 Score=37.05 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=62.2
Q ss_pred EEEEEEECC-CCCeeeeEEEEeccCCCeeeceEecCCceEEEEec--CCCcEEEEEEecCccceEE-------------E
Q psy4833 10 VVRGQVLSV-QGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVN--GGGAVTLQFQRSPYRPQTR-------------T 73 (141)
Q Consensus 10 ~IrG~V~D~-~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~--~g~~~tL~FSyiGY~sqe~-------------~ 73 (141)
+|+=+|.|. +=+||++|.|.|-++........|+.||.=-|.++ -|..+++.-+.-||.+..+ +
T Consensus 2 ~lKV~V~d~~t~qpl~~A~V~V~~N~t~~~s~~t~~dG~~~l~~~yrlg~~l~v~a~k~gyv~ns~Pw~~~rlPv~ssvs 81 (807)
T PF10577_consen 2 TLKVQVSDASTRQPLSDASVEVFGNQTLTASGTTGNDGVVLLKFPYRLGTWLIVTASKDGYVPNSVPWKTSRLPVYSSVS 81 (807)
T ss_pred eEEEEEecccCcccCCCCeEEEEeceeEeecceecCCceEEEEEeccCCCeEEEEEecCCccCCCCCcccccccccccee
Confidence 567788886 68999999999976543456689999999999987 4667788889999975422 2
Q ss_pred EEc---cCccEEEeCCeEEEecCC
Q psy4833 74 VFI---PWNQIVVLPPVKMQLSDA 94 (141)
Q Consensus 74 V~~---~~n~~~~~~~v~m~~~d~ 94 (141)
+++ ....+.+.||+++|....
T Consensus 82 L~Llp~r~a~l~lyeD~v~I~~~~ 105 (807)
T PF10577_consen 82 LSLLPERQATLWLYEDVVQITGGS 105 (807)
T ss_pred eeeeccCcceEEEEeeeeeeeccC
Confidence 222 134566679999986644
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes
Back Show alignment and domain information
Probab=80.55 E-value=10 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=17.6
Q ss_pred CcCCcceEEEEEEEEC-CCCCeee----eEEEEec
Q psy4833 2 TDDELRVAVVRGQVLS-VQGLGIT----GIRVSVD 31 (141)
Q Consensus 2 ~~d~~r~~~IrG~V~D-~~GePL~----GVsV~Vk 31 (141)
||| +-...++|+|+| .+|||+. ||.|++-
T Consensus 16 NYD-~P~s~l~G~iiD~~tgE~i~~~~~gv~i~l~ 49 (222)
T PF12866_consen 16 NYD-EPDSTLTGRIIDVYTGEPIQTDIGGVRIQLY 49 (222)
T ss_dssp -------EEEEEEEEECCTTEE----STSSEEEEE
T ss_pred CCc-CCCceEEEEEEEeecCCeeeecCCceEEEEE
Confidence 344 456799999999 5899876 6777774
These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Homologous Structure Templates
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
ID Alignment Graph Length
Definition
Probability Query 141
1uwy_A 426
Carboxypeptidase M; metallopeptidase, GPI-anchor,
99.31 1h8l_A 380
Carboxypeptidase GP180 residues 503-882; hydrolase
99.25 2nsm_A 439
Carboxypeptidase N catalytic chain; caroxypeptidas
99.21 3mn8_A 435
LP15968P; catalytic domain of alpha/beta-hydrolase
99.2 3th1_A 260
Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy
97.55 2boy_A 254
3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi
97.46 2xsu_A 312
Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE
97.45 2azq_A 311
Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int
97.13 3e8v_A 82
Possible transglutaminase-family protein; structur
97.13 1dmh_A 311
1,2-CTD, catechol 1,2-dioxygenase; aromatic hydroc
97.06 2bum_A 209
Protocatechuate 3,4-dioxygenase alpha chain; oxido
97.01 3hhy_A 280
1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich,
97.01 3t63_M 238
3,4-PCD, protocatechuate 3,4-dioxygenase beta chai
96.98 2bum_B 241
Protocatechuate 3,4-dioxygenase beta chain; oxidor
96.96 3o5u_A 257
Chlorocatechol 1,2-dioxygenase; beta barrel,oxidor
96.89 1nkg_A 508
Rhamnogalacturonase B; polysaccharide lyase, carbo
96.88 3n9t_A 290
PNPC; phospholipid binds, N-terminal helix tunnel,
96.87 1tmx_A 293
Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidor
96.83 3kcp_A 321
Cellulosomal-scaffolding protein A; dockerin, X-mo
96.73 3t63_A 200
3,4-PCD, protocatechuate 3,4-dioxygenase alpha cha
96.68 1cwv_A 492
Invasin; integrin-binding protein, INV gene, struc
94.39 3irp_X 429
URO-adherence factor A; DEV-IGG fold, cell WALL, h
92.32 1cwv_A 492
Invasin; integrin-binding protein, INV gene, struc
91.42 1f00_I 282
Intimin; immunoglobulin-like fold, C-type lectin-l
90.79 1ti6_B 274
Pyrogallol hydroxytransferase small subunit; molyb
89.51 3uaf_A 117
TTR-52; beta barrel/sandwich, cell engulfment, sec
88.61 3qva_A 116
Transthyretin-like protein; transthyretin-related
85.78 2hr0_A 645
Complement C3 beta chain; complement component C3B
84.25 2ww8_A 893
RRGA, cell WALL surface anchor family protein; IGG
81.47 3hrz_A 627
Cobra venom factor; serine protease, glycosilated,
81.35
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1
Back Hide alignment and structure
Probab=99.31 E-value=2.9e-12 Score=109.94 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=65.0
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccCCCeeec--eEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCcc----EE
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKDSGRFGF--TLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQ----IV 82 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~--TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~----~~ 82 (141)
..|+|+|+|++|+||+||+|.++|.. . + ++||.||.|.+.++.| ..+|.||++||+++++.|.+..++ ..
T Consensus 296 ~~I~G~V~D~~g~pi~gA~V~v~g~~-~--~~~~~Td~~G~y~~~l~~G-~Y~l~vs~~Gy~~~~~~v~v~~~~~~~~~~ 371 (426)
T 1uwy_A 296 LGVKGQVFDQNGNPLPNVIVEVQDRK-H--ICPYRTNKYGEYYLLLLPG-SYIINVTVPGHDPHITKVIIPEKSQNFSAL 371 (426)
T ss_dssp CSEEEEEECTTSCBCCSCEEEETTCC-C--SSCCBCCTTCEEEECCCSE-EEEEEEECSSSCCEEEEEEECSSCSSSSCE
T ss_pred ceeEEEEECCCCCccCceEEEEEecc-c--cceeEeCCCCEEEeccCCe-eEEEEEEEcCcccEEEEEEEeCCCccccce
Confidence 46999999999999999999999987 3 6 8999999999987765 457999999999999888887664 22
Q ss_pred EeCCeEEEec
Q psy4833 83 VLPPVKMQLS 92 (141)
Q Consensus 83 ~~~~v~m~~~ 92 (141)
.+ ++.|...
T Consensus 372 ~~-~~~L~~~ 380 (426)
T 1uwy_A 372 KK-DILLPFQ 380 (426)
T ss_dssp EC-CEECSSC
T ss_pred EE-EEEEecC
Confidence 22 6666543
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Back Show alignment and structure
Probab=99.25 E-value=1.6e-11 Score=103.25 Aligned_cols=78 Identities=23% Similarity=0.224 Sum_probs=65.9
Q ss_pred eEEEEEEEECC-CCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCccEEEeCC
Q psy4833 8 VAVVRGQVLSV-QGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVLPP 86 (141)
Q Consensus 8 ~~~IrG~V~D~-~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~~~ 86 (141)
...|+|+|+|. +|+||+||+|.+++.. . + ++||.+|.|.+.++.| ..+|.+|++||++++..|.+..++...+ +
T Consensus 300 ~~~i~G~V~D~~~g~pi~~A~V~v~~~~-~-~-~~Td~~G~y~~~l~~G-~Y~l~vs~~Gy~~~~~~v~v~~~~~~~~-~ 374 (380)
T 1h8l_A 300 HRGIWGFVLDATDGRGILNATISVADIN-H-P-VTTYKDGDYWRLLVQG-TYKVTASARGYDPVTKTVEVDSKGGVQV-N 374 (380)
T ss_dssp GCEEEEEEEETTTCSBCTTCEEEETTEE-E-E-EECCTTSEEEECCCSE-EEEEEEECTTBCCEEEEEEECSSCEEEC-C
T ss_pred cccceEEEEeCCCCCccCceEEEEecCc-c-e-eEECCCEEEEEecCCC-cEEEEEEEcCccceEEEEEEcCCCeEEE-E
Confidence 35799999997 8999999999999886 4 5 9999999999987766 5689999999999999999887765444 5
Q ss_pred eEEE
Q psy4833 87 VKMQ 90 (141)
Q Consensus 87 v~m~ 90 (141)
+.|.
T Consensus 375 ~~L~ 378 (380)
T 1h8l_A 375 FTLS 378 (380)
T ss_dssp EEEC
T ss_pred EEec
Confidence 5553
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}
Back Show alignment and structure
Probab=99.21 E-value=1.8e-11 Score=105.08 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=66.1
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEc-cCccEEEeCCe
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFI-PWNQIVVLPPV 87 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~-~~n~~~~~~~v 87 (141)
..|+|+|+|.+|+||+||+|.|+|.. . + ++||.+|.|.+.++.|. .+|.+|++||+++++.|.+ +.++... ++
T Consensus 321 ~~i~G~V~D~~g~pi~gA~V~v~~~~-~-~-~~Td~~G~y~~~l~~G~-Y~l~vs~~Gy~~~~~~v~v~~~~~~~~--~~ 394 (439)
T 2nsm_A 321 QGIKGMVLDQNYNNLANAVISVSGIN-H-D-VTSGDHGDYFRLLLPGI-YTVSATAPGYDPETVTVTVGPAEPTLV--NF 394 (439)
T ss_dssp CSEEEEEECTTSCBCTTCEEEETTEE-E-E-EECCTTSEEEECCCSEE-EEEEEECTTEECEEEEEEECSSSCEEC--CE
T ss_pred cceEEEEEcCCCCCccceEEEEEccc-c-e-eEECCCCeEEEccCCee-EEEEEEecCceeEEEEEEEecCCcceE--eE
Confidence 46999999999999999999999886 4 5 99999999998877664 6899999999999999888 5555443 88
Q ss_pred EEEecC
Q psy4833 88 KMQLSD 93 (141)
Q Consensus 88 ~m~~~d 93 (141)
.|....
T Consensus 395 ~L~~~~ 400 (439)
T 2nsm_A 395 HLKRSI 400 (439)
T ss_dssp ECEEC-
T ss_pred EEccCC
Confidence 887543
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}
Back Show alignment and structure
Probab=99.20 E-value=1.9e-11 Score=105.60 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=62.1
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccC-CCeeeceEecCCceEEEEecCCCcEEEEEEecCc-cceEEEEEccCcc--EEEe
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKD-SGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPY-RPQTRTVFIPWNQ--IVVL 84 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt-~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY-~sqe~~V~~~~n~--~~~~ 84 (141)
..|+|+|+|++|+||+||+|.|+|. . . + +.||.+|.|.+.++.|. .+|.+|++|| ++++..|.+..++ ...+
T Consensus 337 ~gv~G~V~D~~G~pi~gA~V~v~g~~~-~-~-~~Td~~G~y~~~l~pG~-Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~ 412 (435)
T 3mn8_A 337 IGIKGLVTDASGFPIADANVYVAGLEE-K-P-MRTSKRGEYWRLLTPGL-YSVHASAFGYQTSAPQQVRVTNDNQEALRL 412 (435)
T ss_dssp SSEEEEEECSSSCBCTTCEEEETTCTT-S-C-EECCTTCEEEECCCSEE-EEEEEEBTTBCCCCCEEEEECCCSSSCEEC
T ss_pred ceeEEEEECCCCCccCceEEEEecccc-c-c-eEeCCCCeEEEecCCCc-EEEEEEEcccccceEEEEEEecCCcceeEE
Confidence 3599999999999999999999995 6 3 5 99999999999877664 6899999999 5666666666543 2222
Q ss_pred CCeEEEec
Q psy4833 85 PPVKMQLS 92 (141)
Q Consensus 85 ~~v~m~~~ 92 (141)
++.|.+.
T Consensus 413 -~~~L~~~ 419 (435)
T 3mn8_A 413 -DFKLAPV 419 (435)
T ss_dssp -CEECCBC
T ss_pred -EEEEeec
Confidence 6676654
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Back Show alignment and structure
Probab=97.55 E-value=0.00031 Score=58.05 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=53.5
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEec-----c-----------CCCeeeceEecCCceEEEE-ecCC------------
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVD-----K-----------DSGRFGFTLTRGGGWFDML-VNGG------------ 55 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vk-----g-----------t~~~~G~TiTD~DG~FsL~-V~~g------------ 55 (141)
+.....|+|+|+|.+|+||+||.|-|= | .. ..|...||+||+|.+. +.++
T Consensus 96 ~G~pl~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~-~RG~~~TD~~G~y~F~TI~P~~Ypip~dGp~g~ 174 (260)
T 3th1_A 96 DHKPLIIRGTVRSDTGELLAGAVIDVWHSTPDGLYSGIHDNIPVDY-YRGKLVTDSQGNYRVRTTMPVPYQIPYEGPTGR 174 (260)
T ss_dssp TCCEEEEEEEEEETTSCBCSSCEEEEEECCTTSCCTTTSTTCCTTB-TEEEEECCTTSEEEEEEECCCCEECCCSSHHHH
T ss_pred CCCEEEEEEEEECCCCCCcCCcEEEEEecCCCCcccCcCCCCCCCC-CceEEEeCCCCEEEEEEECCCCCCCCCCCcHHH
Confidence 345789999999999999999999882 1 11 2377999999999996 3332
Q ss_pred ------------CcEEEEEEecCccceEEEEEccC
Q psy4833 56 ------------GAVTLQFQRSPYRPQTRTVFIPW 78 (141)
Q Consensus 56 ------------~~~tL~FSyiGY~sqe~~V~~~~ 78 (141)
..+-+.++.-||+...-+++.+.
T Consensus 175 ll~~~gr~~~RpaHIHf~v~a~g~~~L~Tqiyf~g 209 (260)
T 3th1_A 175 LLGHLGSHTWRPAHVHFKVRKDGFEPLTTQYYFEG 209 (260)
T ss_dssp HHHHTTCCSEECCEEEEEEECTTSCCEEEEEEETT
T ss_pred HHHhcCCCCCCCCeEEEEEEeCCcCeeEEeEecCC
Confidence 22446677778876666666654
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Back Show alignment and structure
Probab=97.46 E-value=0.0011 Score=54.64 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=38.9
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccCC--C-------------eeeceEecCCceEEEE-ecCC
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKDS--G-------------RFGFTLTRGGGWFDML-VNGG 55 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt~--~-------------~~G~TiTD~DG~FsL~-V~~g 55 (141)
...+.|+|+|+|.+|+||+||.|-+=... + ..|...||+||+|.+. +.++
T Consensus 100 G~~l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~TI~Pg 165 (254)
T 2boy_A 100 GDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPA 165 (254)
T ss_dssp SCEEEEEEEEECTTSCBCCSCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCC
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCCCCCCCCeeEEEeCCCceEEEEEECCc
Confidence 45689999999999999999999993211 0 1256899999999997 4433
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Back Show alignment and structure
Probab=97.45 E-value=0.00032 Score=59.35 Aligned_cols=72 Identities=24% Similarity=0.194 Sum_probs=52.7
Q ss_pred eEEEEEEEECCCCCeeeeEEEEeccCC---------------CeeeceEecCCceEEEE-ecCCCc--------------
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSVDKDS---------------GRFGFTLTRGGGWFDML-VNGGGA-------------- 57 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~Vkgt~---------------~~~G~TiTD~DG~FsL~-V~~g~~-------------- 57 (141)
.+.|+|+|+|.+|+||+||.|.|=... +..|...||+||+|.+. +.++..
T Consensus 136 ~l~v~G~V~D~~G~Pv~gA~VeiWqada~G~Y~~~~~~~~~~~~rGr~~TD~~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~ 215 (312)
T 2xsu_A 136 TLIIEGTVTDTEGNIIEGAKVEVWHANSLGNYSFFDKSQSDFNLRRTILTDVNGKYVALTTMPVGYGCPPEGTTQALLNK 215 (312)
T ss_dssp EEEEEEEEEETTSCBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCCCEECCTTSHHHHHHHH
T ss_pred eEEEEEEEECCCCCCCCCCEEEEEecCCCCcccCCCCCCCCCCCeeEEEeCCCceEEEEEECcCcccCCCCCcHHHHHHH
Confidence 789999999999999999999994211 01256899999999986 443432
Q ss_pred ----------EEEEEEecCccceEEEEEccCc
Q psy4833 58 ----------VTLQFQRSPYRPQTRTVFIPWN 79 (141)
Q Consensus 58 ----------~tL~FSyiGY~sqe~~V~~~~n 79 (141)
+-+.++--||....-+++++..
T Consensus 216 ~grh~~RpaHIH~~V~a~G~~~L~Tqlyf~~d 247 (312)
T 2xsu_A 216 LGRHGNRPSHVHYFVSAPGYRKLTTQFNIEGD 247 (312)
T ss_dssp TTCCCEECCEEEEEEECTTBCCEEEEEEETTC
T ss_pred hhccCCCCceEEEEEEcCCccceEEEEecCCC
Confidence 1256677788777667777643
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Back Show alignment and structure
Probab=97.13 E-value=0.0028 Score=53.52 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=52.4
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccCC--C-------------eeeceEecCCceEEEE-ecCCC-------------
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKDS--G-------------RFGFTLTRGGGWFDML-VNGGG------------- 56 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt~--~-------------~~G~TiTD~DG~FsL~-V~~g~------------- 56 (141)
...+.|+|+|+|.+|+||+||.|-|=... + ..|...||+||+|.+. +.++.
T Consensus 130 G~~l~v~G~V~D~~G~Pv~gA~VeiWqada~G~Y~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~Y~~p~dGp~g~lL 209 (311)
T 2azq_A 130 GVVMFLQGQVFDANGKPLAGATVDLWHANTQGTYSYFDSTQSEFNLRRRIITDAEGRYRARSIVPSGYGCDPQGPTQECL 209 (311)
T ss_dssp CCEEEEEEEEECSSSCBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTCEEEEEEECCCCEECCTTSHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCCCCceeEEEecCCCCccCCCCCCCCCCCCeeEEEeCCCceEEEEEEcCCCcCCCCCCcHHHHH
Confidence 46789999999999999999999883111 0 1256899999999996 33332
Q ss_pred -----------cEEEEEEecCccceEEEEEccC
Q psy4833 57 -----------AVTLQFQRSPYRPQTRTVFIPW 78 (141)
Q Consensus 57 -----------~~tL~FSyiGY~sqe~~V~~~~ 78 (141)
.+-+.++--||....-+++++.
T Consensus 210 ~~~grh~~RpaHIHf~V~a~G~~~L~Tqlyf~~ 242 (311)
T 2azq_A 210 DLLGRHGQRPAHVHFFISAFGHRHLTTQINFAG 242 (311)
T ss_dssp HHHTCCCEECCEEEEEEECTTBCCEEEEEEETT
T ss_pred HhhhccCCCCceEEEEEEcCCcceEEEEEecCC
Confidence 2235666778876666666664
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Back Show alignment and structure
Probab=97.13 E-value=0.0013 Score=46.23 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=32.9
Q ss_pred EEEEEECCCCCeeeeEEEEec--cCCCee---eceEecCCceEEEEec
Q psy4833 11 VRGQVLSVQGLGITGIRVSVD--KDSGRF---GFTLTRGGGWFDMLVN 53 (141)
Q Consensus 11 IrG~V~D~~GePL~GVsV~Vk--gt~~~~---G~TiTD~DG~FsL~V~ 53 (141)
+.=+|+|.+|.|.+||.|.++ |.. ++ ....||++|.|+|.+-
T Consensus 3 ~~v~V~d~~GkPV~gA~Vefe~yNya-e~~~~~~~~TD~~G~~s~~~G 49 (82)
T 3e8v_A 3 GSVLVTDAEGQPVADATVEFKVYNYA-EFYTVATKHTDRSGHASLTAG 49 (82)
T ss_dssp EEEEEECTTSCBCTTCEEEEEEEETT-EEEEEEEEECCTTSEEEEECC
T ss_pred EEEEEEcCCCCCCCCCEEEEEEEEch-heeEEEEEEECCCceEEEEEc
Confidence 344799999999999999886 433 22 2368999999999984
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Back Show alignment and structure
Probab=97.06 E-value=0.002 Score=54.47 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=35.9
Q ss_pred eEEEEEEEECCCCCeeeeEEEEeccC-----------------CCeeeceEecCCceEEEE
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSVDKD-----------------SGRFGFTLTRGGGWFDML 51 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~Vkgt-----------------~~~~G~TiTD~DG~FsL~ 51 (141)
.+.|+|+|+|.+|+||+||.|-|=.. .+..|...||+||+|.+.
T Consensus 133 ~l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~~RGr~~TD~~G~y~F~ 193 (311)
T 1dmh_A 133 TLILHGTIFDADGKPLPNAKVEIWHANTKGFYSHFDPTGEQQAFNMRRSIITDENGQYRVR 193 (311)
T ss_dssp EEEEEEEEECTTSCBCTTCEEEEEECCTTSCCTTSCTTSCCSTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEEcCCCCCCCCcEEEEEccCCCcccCCcCCcccCCCCCCeeEEEeCCCceEEEE
Confidence 69999999999999999999988211 002256899999999996
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Back Show alignment and structure
Probab=97.01 E-value=0.0046 Score=49.30 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=36.6
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccC------------------CC--eeeceEe-cCCceEEEE
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKD------------------SG--RFGFTLT-RGGGWFDML 51 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt------------------~~--~~G~TiT-D~DG~FsL~ 51 (141)
...+.|+|+|+|.+|+||+||.|-|=.. ++ ..|...| |++|+|.+.
T Consensus 50 G~~l~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~T~d~~G~y~F~ 116 (209)
T 2bum_A 50 GQRIRLEGQVFDGLGLPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFN 116 (209)
T ss_dssp SCEEEEEECEECTTSCBCSSCEEEEECCCTTSCCSSTTCCSCSCCCTTCCCEEEEECCTTTCCEEEE
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCccceeEEeeeCCCcEEEEE
Confidence 4468999999999999999999988211 10 1266889 999999997
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Back Show alignment and structure
Probab=97.01 E-value=0.0061 Score=50.85 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=36.5
Q ss_pred ceEEEEEEEECCCCCeeeeEEEEeccC-------------C--CeeeceEecCCceEEEE
Q psy4833 7 RVAVVRGQVLSVQGLGITGIRVSVDKD-------------S--GRFGFTLTRGGGWFDML 51 (141)
Q Consensus 7 r~~~IrG~V~D~~GePL~GVsV~Vkgt-------------~--~~~G~TiTD~DG~FsL~ 51 (141)
..+.|+|+|+|.+|+||+||.|-|=.. + +..|...||+||+|.+.
T Consensus 130 ~pl~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~lRGr~~TD~dG~y~F~ 189 (280)
T 3hhy_A 130 TPLVFSGQVTDLDGNGLAGAKVELWHADNDGYYSQFAPHLPEWNLRGTIIADEEGRYEIT 189 (280)
T ss_dssp CEEEEEEEEECTTSCBCSSCEEEEECCCTTSCCTTSSTTSCTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEEECCCCCCCCCcEEEEEecCCCCCCCCCCCCCCCCcceEEEEeCCCceEEEE
Confidence 478999999999999999999987211 0 02377899999999996
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Back Show alignment and structure
Probab=96.98 E-value=0.0021 Score=52.47 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=36.0
Q ss_pred ceEEEEEEEECCCCCeeeeEEEEec-----c-------------CC--CeeeceEecCCceEEEE
Q psy4833 7 RVAVVRGQVLSVQGLGITGIRVSVD-----K-------------DS--GRFGFTLTRGGGWFDML 51 (141)
Q Consensus 7 r~~~IrG~V~D~~GePL~GVsV~Vk-----g-------------t~--~~~G~TiTD~DG~FsL~ 51 (141)
..+.|+|+|+|.+|+||+||.|-|= | .+ +..|...||+||+|.+.
T Consensus 76 ~~i~l~G~V~D~~G~Pv~~A~VEiWqada~G~Y~~~~d~~~~~~~~~f~~rGr~~TD~~G~y~F~ 140 (238)
T 3t63_M 76 ERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFR 140 (238)
T ss_dssp CEEEEEEEEEETTSCBCTTCEEEEEECCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEE
T ss_pred cEEEEEEEEECCCCCCCCCCEEEEEecCCCCCCCCccccccccCCCCcCceeEEEECCCceEEEE
Confidence 5689999999999999999999872 1 00 02266899999999997
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Back Show alignment and structure
Probab=96.96 E-value=0.0031 Score=51.47 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=38.2
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccC------------------CC--eeeceEecCCceEEEE-ecCC
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKD------------------SG--RFGFTLTRGGGWFDML-VNGG 55 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt------------------~~--~~G~TiTD~DG~FsL~-V~~g 55 (141)
...+.|+|+|+|.+|+||+||.|-|=.. ++ ..|...||+||+|.+. +..+
T Consensus 76 G~~i~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg 146 (241)
T 2bum_B 76 GERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPG 146 (241)
T ss_dssp SCEEEEEEEEEETTSCBCCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEECCC
T ss_pred CcEEEEEEEEECCCCCCCCCcEEEEEecCCCceeCCCCCCcccccCCCccceeEEEeCCCceEEEEEecCC
Confidence 3468999999999999999999988311 10 1266899999999997 3334
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Back Show alignment and structure
Probab=96.89 E-value=0.0074 Score=49.76 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=37.0
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEecc-----------------CCCeeeceEecCCceEEEE
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDK-----------------DSGRFGFTLTRGGGWFDML 51 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkg-----------------t~~~~G~TiTD~DG~FsL~ 51 (141)
...+.|+|+|+|.+|+||+||.|-+=. .. ..|...||+||+|.+.
T Consensus 101 G~~l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~-~RGr~~TD~~G~y~F~ 162 (257)
T 3o5u_A 101 GDRMRFTGSVRDTSGTPITGAVIDVWHSTNDGNYSFFSPALPDQYL-LRGRVVPAEDGSIEFH 162 (257)
T ss_dssp SCEEEEEEEEECTTCCBCTTCEEEEECCCTTSCCTTSCTTSCSSCT-TEEEECCCTTSEEEEE
T ss_pred CCEEEEEEEEECCCCCCCCCcEEEEEecCCCCCCCCcCCCCCcccC-ceeEEEeCCCceEEEE
Confidence 357899999999999999999998721 11 2377899999999997
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A
Back Show alignment and structure
Probab=96.88 E-value=0.0027 Score=56.64 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=60.3
Q ss_pred eEEEEEEEECCCCCeeeeEEEEe---ccCCCeeeceEecCCceEEEE-ecCCCcEEEEEEecCccceEEEEEccCccEEE
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSV---DKDSGRFGFTLTRGGGWFDML-VNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVV 83 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~V---kgt~~~~G~TiTD~DG~FsL~-V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~ 83 (141)
.-+|+|+|. |.|...+.|.. |+.. +. |.||.+|+|+|. |.+| ..+|.....||..++..|.+..++...
T Consensus 257 RGtVsG~V~---G~~~~~~avv~~~~k~~q--yw-t~td~~G~FtI~~V~pG-tY~L~a~~~G~~~~~~~VtV~aG~t~~ 329 (508)
T 1nkg_A 257 RGKVAGTAS---GADSSMDWVVHWYNDAAQ--YW-TYTSSSGSFTSPAMKPG-TYTMVYYQGEYAVATSSVTVSAGSTTT 329 (508)
T ss_dssp CBEEEEEEE---SSCTTSCEEEEEECSSCE--EE-EECCTTCEEECCCBCSE-EEEEEEEETTEEEEEEEEEECTTCEEE
T ss_pred ccEEEEEEc---CccCCceEEEEEcCCCce--eE-EEECCCCcEEeCCcCCc-eEEEEEEECceEEEEeEEEEcCCCeeE
Confidence 358999998 77644444555 6665 55 999999999996 6666 468999999999889999999888888
Q ss_pred eCCeEEEec
Q psy4833 84 LPPVKMQLS 92 (141)
Q Consensus 84 ~~~v~m~~~ 92 (141)
+. +++.+.
T Consensus 330 l~-i~~~~~ 337 (508)
T 1nkg_A 330 KN-ISGSVK 337 (508)
T ss_dssp CC-EECCCC
T ss_pred ee-eEEecC
Confidence 76 776644
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Back Show alignment and structure
Probab=96.87 E-value=0.0038 Score=52.32 Aligned_cols=47 Identities=28% Similarity=0.316 Sum_probs=37.5
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEeccCC---------------CeeeceEecCCceEEEE
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDKDS---------------GRFGFTLTRGGGWFDML 51 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~---------------~~~G~TiTD~DG~FsL~ 51 (141)
+...+.|+|+|+|.+|+||+||.|-+=... +..|...||+||+|.+.
T Consensus 126 ~G~~l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~lRGr~~TD~~G~y~F~ 187 (290)
T 3n9t_A 126 DGVPALVYGRVLDVQGRPVVGAVLDVWQTADNGMYSGQDPDQPFGNLRGRYRSDNDGCFAIQ 187 (290)
T ss_dssp CSCEEEEEEEEEETTSCBCSSCEEEEECCCTTSCCTTTSTTSCTTTTEEEEECCTTSEEEEE
T ss_pred CCCeEEEEEEEECCCCCCCCCCEEEEEccCCCCCcCCCCCCCCCCCceeEEEeCCCceEEEE
Confidence 345789999999999999999999882110 12377899999999996
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Back Show alignment and structure
Probab=96.83 E-value=0.0031 Score=52.87 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=37.5
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEeccCC--------------CeeeceEecCCceEEEE
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDKDS--------------GRFGFTLTRGGGWFDML 51 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~--------------~~~G~TiTD~DG~FsL~ 51 (141)
+...+.|+|+|+|.+|+||+||.|-|=... +..|...||+||+|.+.
T Consensus 130 ~G~~l~v~G~V~D~~G~Pv~~A~VEiWqada~G~Y~~~~~~~~~~~rGr~~TD~~G~y~F~ 190 (293)
T 1tmx_A 130 AGEPCWVEGTVTDTDGNPVPDARIEVWEADDDGFYDVQYDDDRTAARAHLLSGPDGGYAFW 190 (293)
T ss_dssp CSCEEEEEEEEEETTSCBCTTCEEEEECCCTTSCCGGGSSSCCCCSEEEEECCTTSEEEEE
T ss_pred CCCEEEEEEEEECCCCCCCCCceeEEEecCCCCcccCCccCCCCCceeEEEeCCCceEEEE
Confidence 345689999999999999999999883111 11266899999999996
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B
Back Show alignment and structure
Probab=96.73 E-value=0.0025 Score=54.37 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=50.6
Q ss_pred eEEEEEEEECC-------CCCeeeeEEEEeccCCCeeeceEecCCceEEEE-ecCCC-cEEEEEEecCccceEEEE
Q psy4833 8 VAVVRGQVLSV-------QGLGITGIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGG-AVTLQFQRSPYRPQTRTV 74 (141)
Q Consensus 8 ~~~IrG~V~D~-------~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~-~~tL~FSyiGY~sqe~~V 74 (141)
..+|+|-|..+ ....-.|++|.+.|+. ..++||.+|+|.|. ++.+. ..+|+|+.-||.+.+++-
T Consensus 157 ~~~vsGYi~~~~~~~~~~~~~~~~G~~V~i~gt~---~sa~tD~~G~f~I~~vp~~~~~ytl~i~~~g~l~~~i~~ 229 (321)
T 3kcp_A 157 GYKVSGYILPDFSFDATVAPLVKAGFKVEIVGTE---LYAVTDANGYFEITGVPANASGYTLKISRATYLDRVIAN 229 (321)
T ss_dssp SEEEEEEEEESSCCCTTTHHHHHSCCEEEETTSS---CEEECCTTSEEEEEEECCEEEEEEEEEECTEECCEEEEE
T ss_pred CceEEEEEccccccccccchhccCCcEEEEEecc---ceeEECCCceEEEeccCCCCccEEEEEeecCceeeeeee
Confidence 46788877542 2446679999999998 36899999999995 77542 368999999999998873
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Back Show alignment and structure
Probab=96.68 E-value=0.01 Score=47.11 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=51.5
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccC----------------CCeeeceEecCC-ceEEEE-ecCC-----------C
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKD----------------SGRFGFTLTRGG-GWFDML-VNGG-----------G 56 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt----------------~~~~G~TiTD~D-G~FsL~-V~~g-----------~ 56 (141)
...+.|+|+|+|.+|+||+||.|-|=.. . ..|...||+| |+|.+. +.++ .
T Consensus 46 G~~l~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~f~-~rGr~~TD~~~G~~~F~TI~Pg~Y~~~~g~~rp~ 124 (200)
T 3t63_A 46 GEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFN-SFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAP 124 (200)
T ss_dssp SCEEEEEECEECTTSCBCSSCEEEEEECCTTSCCCCBCCTTSSBC-SEEEEECCSSCCSEEEEEECCCCEECTTSCEECS
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEccCCCCCcCCCCCCCCCcc-ccceEecCCCCCEEEEEEECCcCcCCCCCCccCC
Confidence 3468999999999999999999987211 1 2367899999 999996 3322 2
Q ss_pred cEEEEEEecCccc-eEEEEEccCcc
Q psy4833 57 AVTLQFQRSPYRP-QTRTVFIPWNQ 80 (141)
Q Consensus 57 ~~tL~FSyiGY~s-qe~~V~~~~n~ 80 (141)
.+-+.+..-||.. ..-+++++...
T Consensus 125 HIH~~V~a~G~~~~L~Tqlyf~~d~ 149 (200)
T 3t63_A 125 HINISLFARGINIHLHTRLYFDDEA 149 (200)
T ss_dssp CEEEEEECTTCSSCEEEEEEEGGGH
T ss_pred EEEEEEeCCCCccceEEeEEcCCCc
Confidence 2445556667764 55556665433
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Back Show alignment and structure
Probab=94.39 E-value=0.19 Score=43.95 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=45.7
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCCee---eceEecCCceEEEEecC--CCcEEEEEEecC
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRF---GFTLTRGGGWFDMLVNG--GGAVTLQFQRSP 66 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~---G~TiTD~DG~FsL~V~~--g~~~tL~FSyiG 66 (141)
|..-..+++-+|+|.+|.||+|..|.+.-..+.. +...||.+|.+.+.+.+ .+..++..+.-|
T Consensus 23 dG~~~~~ltatV~D~~Gnpv~g~~Vtf~~~~g~~~~~~t~~Td~~G~a~~tltst~aG~~~VtAt~~g 90 (492)
T 1cwv_A 23 NGKTAITVEFTVADFEGKPLAGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEG 90 (492)
T ss_dssp SSSSCEEEEEEEECTTSCBCCSCEEEEECCTTCBSCEEEEECCTTSEEEEEEBCSSCEEEEEEEEETT
T ss_pred CCCceEEEEEEEEcCCCCCCCCCEEEEEECCCccccccceeeCCCceEEEEEEcCcceEEEEEEEECC
Confidence 4455678999999999999999999997432110 22579999999998752 234466667666
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Back Show alignment and structure
Probab=92.32 E-value=0.14 Score=44.57 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=38.5
Q ss_pred EEEEEEEE-C--------CCCCeeeeEEEEeccCCC-eeeceEecCCceEEEE-ecCCCcEEEEEEe
Q psy4833 9 AVVRGQVL-S--------VQGLGITGIRVSVDKDSG-RFGFTLTRGGGWFDML-VNGGGAVTLQFQR 64 (141)
Q Consensus 9 ~~IrG~V~-D--------~~GePL~GVsV~Vkgt~~-~~G~TiTD~DG~FsL~-V~~g~~~tL~FSy 64 (141)
..|.|.|- | +.+.||+||.|.+....+ ..+.+.||++|.|.+. ++.| ..+++|..
T Consensus 306 ~~igg~Vw~D~n~nG~~D~~e~gl~gv~v~L~d~~G~~v~tttTd~~G~Y~F~~L~~G-~Y~V~~~~ 371 (429)
T 3irp_X 306 GGFGGYVWFDKNNDGVQNDSNAAAAGITVNLLDPTGIRLATTTTDITGHYNFDNLTNG-NYLVEFVM 371 (429)
T ss_dssp EEEEEEEEECTTSSSSSCCSSCBCTTCEEEEECTTSCEEEEEECCTTSEEEEEEEESE-EEEEEECC
T ss_pred EEEccEEEEeCCCCCCcCcCCCCcCCeEEEEEcCCCCEEEEEEeCCCCeEEeCCCCCC-cEEEEEEC
Confidence 56778873 3 234699999999874332 2356899999999997 4555 45677754
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Back Show alignment and structure
Probab=91.42 E-value=0.6 Score=40.74 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=44.7
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecC--CCcEEEEEEecCcc
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNG--GGAVTLQFQRSPYR 68 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~--g~~~tL~FSyiGY~ 68 (141)
....+++=+|+|.+|.||+|+.|.+.-..+......||.+|.+.+.+.. .+..++..+.-|..
T Consensus 123 ~~~~tltatv~Da~GNpv~g~~Vtf~~~~g~~~~~Ttd~~G~at~tlts~~aG~~tVtA~v~g~~ 187 (492)
T 1cwv_A 123 LMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAA 187 (492)
T ss_dssp SCCEEEEEECBBTTSCBCCSCCEEEEESSSEECCCEECSSSEEEEEEECSSCEEEEEEEEETTEE
T ss_pred ceeEEEEEEEEcCCCCCcCCcEEEEEECCCceeeeEecCCcEEEEEEEccCceEEEEEEEECCcc
Confidence 3467889999999999999999999755322232344799999998753 23456766666654
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Back Show alignment and structure
Probab=90.79 E-value=0.44 Score=39.42 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCCee--eceEecCCceEEEEec
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRF--GFTLTRGGGWFDMLVN 53 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~--G~TiTD~DG~FsL~V~ 53 (141)
|..-..+++=+|+| +|.||+|..|.+.-+.+.+ ....||.||...+.+.
T Consensus 16 dG~d~~t~tatV~D-~gnpv~g~~V~fs~~~G~l~~~~~~Td~~G~atvtlt 66 (282)
T 1f00_I 16 NGQDAITYTVKVMK-GDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLT 66 (282)
T ss_dssp SSCCCEEEEEEEEE-TTEECTTCEEEEEESSSEESCSEEECCTTSEEEEEEE
T ss_pred cCcceEEEEEEEEE-CCcccCCcEEEEEcCCCccccceeEECCCcEEEEEEE
Confidence 45567789999999 9999999999997554100 1267999999999875
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Back Show alignment and structure
Probab=89.51 E-value=1.2 Score=36.10 Aligned_cols=69 Identities=23% Similarity=0.219 Sum_probs=52.9
Q ss_pred CCCCeeeeEEEEeccCCCeeeceEecCCceEEEE-ecCCCcEEEEEEecCccceEEEEEccCccEEEeCCeEE
Q psy4833 18 VQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVLPPVKM 89 (141)
Q Consensus 18 ~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~~~v~m 89 (141)
.+++.+.++.|-+.....+...+.||..|.|-+. ++.| ..+|.+..-|| +...++.+ .+..+.+++|.|
T Consensus 205 a~~~~~~~~~vpl~~~~~~va~~~~d~~G~f~~~~l~~G-~y~v~v~a~g~-p~~~~~~~-~~~~~~lg~v~l 274 (274)
T 1ti6_B 205 VQGDCFEGAKVVLKSGGKEVASAETNFFGEFKFDALDNG-EYTVEIDADGK-SYSDTVVI-DDKSVDLGFIKL 274 (274)
T ss_dssp ETTEECTTCEEEEEETTEEEEEEECCTTSEEEEEEECSE-EEEEEEEETTE-EEEEEEEE-SSSCEEEEEEEC
T ss_pred cccccccCCEEEEEcCCcEEEEEeecCcCcEEEeccCCc-ceEEEEecCCC-CccceeEE-ccCccccceeeC
Confidence 5677888877777633212345889999999995 4545 46899999999 99999998 888889988865
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Back Show alignment and structure
Probab=88.61 E-value=0.98 Score=32.86 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=32.8
Q ss_pred ceEEEEEEEECCCCCe--eeeEEEEecc--------CCCeeeceEecCCceEEEEec
Q psy4833 7 RVAVVRGQVLSVQGLG--ITGIRVSVDK--------DSGRFGFTLTRGGGWFDMLVN 53 (141)
Q Consensus 7 r~~~IrG~V~D~~GeP--L~GVsV~Vkg--------t~~~~G~TiTD~DG~FsL~V~ 53 (141)
+.+.|+|+++= .|+| +.+|.|++-. .. .++.+.||.+|+|.|.-.
T Consensus 3 qsV~V~G~L~C-~~~Pa~~~~V~V~L~d~~~~~~d~Dd-ll~~~~Td~~G~F~l~G~ 57 (117)
T 3uaf_A 3 SCLMATGVLKC-PTDPEAVKKVHIDLWDAAAAAAESDD-LMGRTWSDRNGNFQVTGC 57 (117)
T ss_dssp EEEEEEEEEEC-TTCGGGGSSCEEEEEEHHHHHTTSCC-EEEEEECCTTSEEEEEEE
T ss_pred EEEEEEEEEEe-CCccCCCCCEEEEEEecccccCCchH-hheeeEECCCCEEEEEEE
Confidence 45789999974 4777 5578886642 12 346789999999999854
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Back Show alignment and structure
Probab=85.78 E-value=0.61 Score=34.28 Aligned_cols=55 Identities=16% Similarity=0.324 Sum_probs=38.9
Q ss_pred EEEEEEEECC-CCCeeeeEEEEeccCCCeeeceEecCCceEEEEec---CCCcEEEEEE
Q psy4833 9 AVVRGQVLSV-QGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVN---GGGAVTLQFQ 63 (141)
Q Consensus 9 ~~IrG~V~D~-~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~---~g~~~tL~FS 63 (141)
..|+=.|+|. .|.|-+||.|.+-.-...++...||+||+..+-.+ ..+...|+|-
T Consensus 10 ~~lstHVLDt~~G~PAagv~V~L~~~~~~l~~~~Tn~DGR~~~l~~~~~~~G~Y~L~F~ 68 (116)
T 3qva_A 10 STLSTHILDISTGTPAEGVTVSLSREGETLANLVTNAQGRIATFSAAPLPAGRYCLTAE 68 (116)
T ss_dssp BCEEEEEEETTTTEECTTCEEEEEETTEEEEEEECCTTSEECCSCSSCBCSSEEEEEEC
T ss_pred CCeeeEEeecCCCcCCCCCEEEEEEccEeEEEeccCCCCCccccccccCCCceEEEEEe
Confidence 4578899995 79999999999854211346689999999864211 1244678874
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Back Show alignment and structure
Probab=84.25 E-value=2.4 Score=37.13 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=40.3
Q ss_pred cCCcceEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCc--eEEEEecC-CCcEEEEEEe
Q psy4833 3 DDELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGG--WFDMLVNG-GGAVTLQFQR 64 (141)
Q Consensus 3 ~d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG--~FsL~V~~-g~~~tL~FSy 64 (141)
|.+.....+.=+++|.+|.|++|+.|.+.... .+. ..||.+| .|.|..+. .+.+.|++.+
T Consensus 342 ~~~g~~~~~~v~~~~~dG~p~~~~~v~l~~~~-~~~-~~t~~~G~~~~~i~~~~~~g~y~l~v~~ 404 (645)
T 2hr0_A 342 FKPGMPFDLMVFVTNPDGSPAYRVPVAVQGED-TVQ-SLTQGDGVAKLSINTHPSQKPLSITVRT 404 (645)
T ss_dssp CCTTSEEEEEEEEECSSSSBCSCCCEEESSSC-CSC-CCCCTTSEEEEEEECCSCSSCEEEEEEE
T ss_pred cCCCCcEEEEEEEEcCCCCccCCEEEEEecCc-cee-eEECCCCcEEEEEECCCCCeEEEEEEEE
Confidence 34555666666789999999999999986431 112 5678888 66666553 2445566655
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Back Show alignment and structure
Probab=81.47 E-value=7.2 Score=36.67 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=50.0
Q ss_pred EEEEEECCCCCeeeeEEEEeccCCC--eeeceEecCCceEEEE-ecCCCcEEEEEEe--cCcc--ceEEEEEccCccEEE
Q psy4833 11 VRGQVLSVQGLGITGIRVSVDKDSG--RFGFTLTRGGGWFDML-VNGGGAVTLQFQR--SPYR--PQTRTVFIPWNQIVV 83 (141)
Q Consensus 11 IrG~V~D~~GePL~GVsV~Vkgt~~--~~G~TiTD~DG~FsL~-V~~g~~~tL~FSy--iGY~--sqe~~V~~~~n~~~~ 83 (141)
|+-+-+|++|+||+||...+....+ ......||.||.+.+. +..|. .+|.=.. -||. .....|.+..+..+.
T Consensus 50 ~~i~K~d~~~~~L~GA~F~l~~~~~~~~~~~~tTd~~G~~~~~~L~~G~-Y~l~Et~AP~GY~l~~~~~~v~v~~~g~~~ 128 (893)
T 2ww8_A 50 VVIKETGEGGALLGDAVFELKNNTDGTTVSQRTEAQTGEAIFSNIKPGT-YTLTEAQPPVGYKPSTKQWTVEVEKNGRTT 128 (893)
T ss_dssp EEEEEECSTTCBCCCCEEEEEETTTCCEEEEECCTTTCEEEEEEECSEE-EEEEEEECCTTBCCCCCEEEEEECTTCCEE
T ss_pred EEEEEECCCCCccCCCEEEEEECCCCeEEEEEEECCCCeEEECCCCCCc-EEEEEccCCCceecCCccEEEEECCCceEE
Confidence 3334478999999999999875541 1222568999999995 66564 4565555 5886 345677777665555
Q ss_pred eC
Q psy4833 84 LP 85 (141)
Q Consensus 84 ~~ 85 (141)
+.
T Consensus 129 v~ 130 (893)
T 2ww8_A 129 VQ 130 (893)
T ss_dssp ET
T ss_pred Ee
Confidence 44
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Back Show alignment and structure
Probab=81.35 E-value=4.8 Score=35.90 Aligned_cols=59 Identities=10% Similarity=0.000 Sum_probs=42.7
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEec--C-CCcEEEEEEec
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVN--G-GGAVTLQFQRS 65 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~--~-g~~~tL~FSyi 65 (141)
-|.-...++=+|+|.+|.|++++.|.+.... . . ..||.||.-.+.++ . ...+.|.+.+-
T Consensus 333 kpG~p~~~~v~v~~~dg~P~~~~~V~v~~~~-~-~-~~td~~G~a~f~i~t~~~~~~l~i~~~~~ 394 (627)
T 3hrz_A 333 KPGMPYELTVYVTNPDGSPAAHVPVVSEAFH-S-M-GTTLSDGTAKLILNIPLNAQSLPITVRTN 394 (627)
T ss_dssp CTTSCEEEEEEEECTTSCBCTTCEEEEGGGT-E-E-EECCTTSEEEEEECCCTTCSEEEEEEEEC
T ss_pred cCCCcEEEEEEEECCCCCcCCCceEEEEcCc-c-e-eEECCCCeEEEEEECCCCCcEEEEEEEeC
Confidence 3555667777899999999999999987554 2 3 67999998777653 2 24455666664
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 141
d1h8la1 79
Carboxypeptidase D C-terminal domain {Crested duck
99.59 d1uwya1 107
Carboxypeptidase M C-terminal domain {Human (Homo
99.54 d1nkga1 87
Rhamnogalacturonase B, RhgB, middle domain {Asperg
99.43 d1vlfn1 79
Transhydroxylase beta subunit, BthL, C-terminal do
99.24 d2burb1 238
Protocatechuate-3,4-dioxygenase, beta chain {Acine
97.33 d1s9aa_ 256
Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus
97.31 d1dmha_ 309
Catechol 1,2-dioxygenase {Acinetobacter calcoaceti
97.17 d3pccm_ 236
Protocatechuate-3,4-dioxygenase, beta chain {Pseud
97.14 d2b59b2 96
Cellulosomal scaffolding protein A {Clostridium th
96.86 d1cwva1 94
Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
96.45 d1cwva2 96
Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
96.41 d2bura1 202
Protocatechuate-3,4-dioxygenase, alpha chain {Acin
96.31 d3pcca_ 200
Protocatechuate-3,4-dioxygenase, alpha chain {Pseu
96.22 d1f00i1 95
Intimin {Escherichia coli [TaxId: 562]}
95.04 d1cwva3 103
Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
92.92
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Back Hide information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase D C-terminal domain
species: Crested duck (Lophonetta specularioides) [TaxId: 8836]
Probab=99.59 E-value=1.2e-15 Score=101.39 Aligned_cols=75 Identities=24% Similarity=0.259 Sum_probs=64.8
Q ss_pred EEEEEECC-CCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCccEEEeCCeEE
Q psy4833 11 VRGQVLSV-QGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVLPPVKM 89 (141)
Q Consensus 11 IrG~V~D~-~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~~~v~m 89 (141)
|+|+|+|. +|+||+||+|.+++.. . + +.||.||+|.+.++.| ..+|.+++.||+++++.|.+..++...+ ++.|
T Consensus 2 I~G~V~d~~tg~pi~~a~V~v~~~~-~-~-~~Td~~G~f~~~l~~G-~y~l~vs~~Gy~~~~~~v~v~~~~~~~~-~~~L 76 (79)
T d1h8la1 2 IWGFVLDATDGRGILNATISVADIN-H-P-VTTYKDGDYWRLLVQG-TYKVTASARGYDPVTKTVEVDSKGGVQV-NFTL 76 (79)
T ss_dssp EEEEEEETTTCSBCTTCEEEETTEE-E-E-EECCTTSEEEECCCSE-EEEEEEECTTBCCEEEEEEECSSCEEEC-CEEE
T ss_pred cEEEEEECCCCCCcCCeEEEEeCcc-c-c-EEecCCCCEEEEeecc-cEEEEEEEEEeccEEEEEEECCCCeEEE-EEEE
Confidence 89999995 7999999999999887 4 5 9999999999988765 4689999999999999999998887654 4555
Q ss_pred E
Q psy4833 90 Q 90 (141)
Q Consensus 90 ~ 90 (141)
.
T Consensus 77 ~ 77 (79)
T d1h8la1 77 S 77 (79)
T ss_dssp C
T ss_pred c
Confidence 4
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase M C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=6e-15 Score=102.89 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=63.3
Q ss_pred EEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCccE---EEeCCe
Q psy4833 11 VRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQI---VVLPPV 87 (141)
Q Consensus 11 IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~---~~~~~v 87 (141)
|+|+|+|++|+||+||+|.+++....+ .+.||.+|.|.+.++.| ..+|.||++||++++.++.+..++. .+.-++
T Consensus 2 I~G~V~D~~g~pi~~A~V~i~~~~~~~-~~~td~~G~f~~~~~~g-~Y~l~vs~~Gy~~~~~~v~v~~~~~~~~~~~~d~ 79 (107)
T d1uwya1 2 VKGQVFDQNGNPLPNVIVEVQDRKHIC-PYRTNKYGEYYLLLLPG-SYIINVTVPGHDPHITKVIIPEKSQNFSALKKDI 79 (107)
T ss_dssp EEEEEECTTSCBCCSCEEEETTCCCSS-CCBCCTTCEEEECCCSE-EEEEEEECSSSCCEEEEEEECSSCSSSSCEECCE
T ss_pred cEEEEECCCCCCcCcEEEEEEcccccc-eeecchhheeeeecCCc-cEEEEEEEEEeeeEEEEEEECCCCcceeeEEEEE
Confidence 899999999999999999999876222 37899999999987765 4689999999999999998875543 244466
Q ss_pred EEE
Q psy4833 88 KMQ 90 (141)
Q Consensus 88 ~m~ 90 (141)
.|.
T Consensus 80 ~L~ 82 (107)
T d1uwya1 80 LLP 82 (107)
T ss_dssp ECS
T ss_pred Ecc
Confidence 653
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]}
Back Show information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Rhamnogalacturonase B, RhgB, middle domain
domain: Rhamnogalacturonase B, RhgB, middle domain
species: Aspergillus aculeatus [TaxId: 5053]
Probab=99.43 E-value=2.8e-13 Score=92.32 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=64.6
Q ss_pred ceEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEE-ecCCCcEEEEEEecCccceEEEEEccCccEEEe
Q psy4833 7 RVAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVL 84 (141)
Q Consensus 7 r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~ 84 (141)
..-+|+|+|+|.++.|+++|+|.+++.. ++ +.||.||+|.|. ++.| ..+|.++++||++++..|.+..++...+
T Consensus 6 ~~GtvsG~V~~~~~~~~~~v~v~~~~~~--~~-~~Td~~G~f~i~~l~~G-~Y~l~v~~~Gy~~~~~~v~v~~g~t~~~ 80 (87)
T d1nkga1 6 GRGKVAGTASGADSSMDWVVHWYNDAAQ--YW-TYTSSSGSFTSPAMKPG-TYTMVYYQGEYAVATSSVTVSAGSTTTK 80 (87)
T ss_dssp GCBEEEEEEESSCTTSCEEEEEECSSCE--EE-EECCTTCEEECCCBCSE-EEEEEEEETTEEEEEEEEEECTTCEEEC
T ss_pred cEEEEEEEEECCCCCcccEEEEEeCCcE--EE-EEeCCCCcEEEcccCCC-CEEEEEEEccccceeeeEEEcCCCEEEE
Confidence 3458999999999999999999999987 46 999999999995 6656 4689999999999999999998876654
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Back Show information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Cna protein B-type domain
family: Cna protein B-type domain
domain: Transhydroxylase beta subunit, BthL, C-terminal domain
species: Pelobacter acidigallici [TaxId: 35816]
Probab=99.24 E-value=1.7e-11 Score=82.86 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=58.2
Q ss_pred eEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEE-ecCCCcEEEEEEecCccceEEEEEccCccEEEeCC
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVLPP 86 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~~~ 86 (141)
-++++|.|+| |+||+||+|.+++.......++||++|+|.|. +++| .++|++||+||++.+..+. .+..+-+..
T Consensus 2 n~~~~gi~~~--G~~v~gA~V~L~~~~~~v~~t~Td~~G~F~f~~l~~G-~Y~l~is~~Gy~~~~~~v~--~~~~vdLG~ 76 (79)
T d1vlfn1 2 NYVTAGILVQ--GDCFEGAKVVLKSGGKEVASAETNFFGEFKFDALDNG-EYTVEIDADGKSYSDTVVI--DDKSVDLGF 76 (79)
T ss_dssp EEEEEEEEET--TEECTTCEEEEEETTEEEEEEECCTTSEEEEEEECSE-EEEEEEEETTEEEEEEEEE--SSSCEEEEE
T ss_pred CcEEeeEEEC--CccccccEEEEECCCCeEEeeEECCCCcEEEEecCCC-CEEEEEEEecccceeeEEe--cCCcceEeE
Confidence 3689999986 99999999999875422234899999999997 5655 4689999999999876554 355555555
Q ss_pred eE
Q psy4833 87 VK 88 (141)
Q Consensus 87 v~ 88 (141)
|.
T Consensus 77 I~ 78 (79)
T d1vlfn1 77 IK 78 (79)
T ss_dssp EE
T ss_pred Ee
Confidence 54
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
Back Show information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, beta chain
species: Acinetobacter calcoaceticus, adp1 [TaxId: 471]
Probab=97.33 E-value=0.00037 Score=55.02 Aligned_cols=50 Identities=26% Similarity=0.320 Sum_probs=38.4
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccC--CC------------------eeeceEecCCceEEEE-ecCC
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKD--SG------------------RFGFTLTRGGGWFDML-VNGG 55 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt--~~------------------~~G~TiTD~DG~FsL~-V~~g 55 (141)
...+.|+|+|+|++|.||+||.|-|=.. .+ ..|...||++|+|.+. +..|
T Consensus 73 Ge~i~v~G~V~D~~g~Pv~~A~VEiWQada~G~Y~~~~d~~~~~~d~~f~grGr~~TD~~G~y~F~TI~Pg 143 (238)
T d2burb1 73 GERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPG 143 (238)
T ss_dssp SCEEEEEEEEEETTSCBCCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEECCC
T ss_pred cCEEEEEEEEECCCCCCCCCcEEEEEecCCCcccCCccccccCccCCCcceEEEEEeCCCCeEEEEeCCCc
Confidence 3568899999999999999999988211 00 1366899999999997 4444
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]}
Back Show information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Chlorocatechol 1,2-dioxygenase
species: Rhodococcus opacus [TaxId: 37919]
Probab=97.31 E-value=0.00061 Score=54.20 Aligned_cols=46 Identities=20% Similarity=0.114 Sum_probs=37.9
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEecc-----------------CCCeeeceEecCCceEEEE
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDK-----------------DSGRFGFTLTRGGGWFDML 51 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkg-----------------t~~~~G~TiTD~DG~FsL~ 51 (141)
+.....|+|+|+|.+|+||+||.|-+=. .. ..|...||+||+|.+.
T Consensus 99 ~G~~l~v~G~V~D~~g~Pi~gA~veiWqad~~G~Y~~~~~~~~~~~~-~rG~~~Td~~G~y~F~ 161 (256)
T d1s9aa_ 99 PGDRMRFTGSVRDTSGTPITGAVIDVWHSTNDGNYSFFSPALPDQYL-LRGRVVPAEDGSIEFH 161 (256)
T ss_dssp SSCEEEEEEEEEETTSCBCTTCEEEEECCCTTSCCTTSCTTSCSSCC-SEEEECCCTTSEEEEE
T ss_pred CCCEEEEEEEEECCCCCCccCeEEEEEccCCcccccccccCCCCCcc-ceeEEEeCCCCcEEEE
Confidence 3567899999999999999999998721 11 2377999999999997
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]}
Back Show information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Catechol 1,2-dioxygenase
species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.17 E-value=0.0015 Score=53.31 Aligned_cols=73 Identities=10% Similarity=0.126 Sum_probs=53.1
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccC---------------C--CeeeceEecCCceEEEE-ecCC------------
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKD---------------S--GRFGFTLTRGGGWFDML-VNGG------------ 55 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt---------------~--~~~G~TiTD~DG~FsL~-V~~g------------ 55 (141)
...+.|+|+|+|.+|+||+||.|-+=.. + +..|...||+||+|.+. +.++
T Consensus 129 G~~l~v~G~V~D~~G~Pi~~A~veiWqad~~G~Y~~~d~~~~~~~~~~rG~~~Td~~G~y~F~TI~P~~Y~iP~dGP~G~ 208 (309)
T d1dmha_ 129 GHTLILHGTIFDADGKPLPNAKVEIWHANTKGFYSHFDPTGEQQAFNMRRSIITDENGQYRVRTILPAGYGCPPEGPTQQ 208 (309)
T ss_dssp CCEEEEEEEEECTTSCBCTTCEEEEEECCTTSCCTTSCTTSCCSTTTTEEEEECCTTSEEEEEEECCCCEECCTTSHHHH
T ss_pred CcEEEEEEEEECCCCCCcCCceEEEEecCCCceecCcCCCCCCCccCceeEEeeCCCCeEEEEEEccCCCCCCCCCcHHH
Confidence 4678999999999999999999988311 0 02366789999999996 3332
Q ss_pred ------------CcEEEEEEecCccceEEEEEccC
Q psy4833 56 ------------GAVTLQFQRSPYRPQTRTVFIPW 78 (141)
Q Consensus 56 ------------~~~tL~FSyiGY~sqe~~V~~~~ 78 (141)
..+-+.++.-||+...-+++.+.
T Consensus 209 LL~a~Grh~~RpaHIH~~V~a~G~~~LtTqlyf~~ 243 (309)
T d1dmha_ 209 LLNQLGRHGNRPAHIHYFVSADGHRKLTTQINVAG 243 (309)
T ss_dssp HHHHTTCCCEECSEEEEEEECTTBCCEEEEEEETT
T ss_pred HHHHhcCCCCCCCEEEEEEEecCCCceEEeEEcCC
Confidence 23456667778877776777653
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]}
Back Show information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, beta chain
species: Pseudomonas putida [TaxId: 303]
Probab=97.14 E-value=0.00027 Score=55.69 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=37.1
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccC------------------C--CeeeceEecCCceEEEEe
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKD------------------S--GRFGFTLTRGGGWFDMLV 52 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt------------------~--~~~G~TiTD~DG~FsL~V 52 (141)
...+.|+|+|+|++|+||+||.|-|=.. + ...|.++||+||+|.+..
T Consensus 75 Ge~i~v~GrV~D~~g~Pv~~a~VEIWQana~G~Y~~~~d~~~~~~d~~f~grGr~~Td~~G~y~F~T 141 (236)
T d3pccm_ 75 GERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRT 141 (236)
T ss_dssp SCEEEEEEEEEETTSCBCTTCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEE
T ss_pred CCEEEEEEEEECCCCCCcCCcEEEEEecCCCceECCCccccccccCCccceEEEEEcCCCCeEEEEe
Confidence 3468999999999999999999998110 0 023668999999999973
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]}
Back Show information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Pre-dockerin domain
domain: Cellulosomal scaffolding protein A
species: Clostridium thermocellum [TaxId: 1515]
Probab=96.86 E-value=0.00085 Score=46.56 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=47.8
Q ss_pred EEEEEEE-EC----CCCCee--eeEEEEeccCCCeeeceEecCCceEEEE-ecCCC-cEEEEEEecCccceEEE
Q psy4833 9 AVVRGQV-LS----VQGLGI--TGIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGG-AVTLQFQRSPYRPQTRT 73 (141)
Q Consensus 9 ~~IrG~V-~D----~~GePL--~GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~-~~tL~FSyiGY~sqe~~ 73 (141)
.+|+|-+ .| .+-+|+ .|-+|.+.|+. . +++||++|.|.|. ++++. ..+|++|+--|...+++
T Consensus 2 ~tvsGYi~~DF~~~~~~a~~vKsGF~V~i~GT~-l--~~vTD~nGYFEI~gvp~~~~~~Tl~Isk~~YL~r~it 72 (96)
T d2b59b2 2 YKVSGYILPDFSFDATVAPLVKAGFKVEIVGTE-L--YAVTDANGYFEITGVPANASGYTLKISRATYLDRVIA 72 (96)
T ss_dssp EEEEEEEEESSCCCTTTHHHHHSCCEEEETTSS-C--EEECCTTSEEEEEEECCEEEEEEEEEECTEECCEEEE
T ss_pred ceEEEEEcCccccCcccchhhhcCcEEEEEeeE-e--EEEeccCceEEEecCcCCCcceEEEEcchhhhhheee
Confidence 3677755 33 234454 58899999998 5 6999999999997 66443 16899999999999986
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
Back Show information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Invasin
species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=96.45 E-value=0.018 Score=38.55 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=47.2
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCC---eeeceEecCCceEEEEecC--CCcEEEEEEecCccceEEE
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSG---RFGFTLTRGGGWFDMLVNG--GGAVTLQFQRSPYRPQTRT 73 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~---~~G~TiTD~DG~FsL~V~~--g~~~tL~FSyiGY~sqe~~ 73 (141)
|..-..+++=+|.|.+|.||+|+.|.+.-.++ .-....||.||.+.+.+.+ .+..++.-+.-| .++...
T Consensus 15 dG~d~~t~tatv~D~~gnpv~g~~V~f~~~~~~~~~~~~~~Td~~G~a~v~ltst~aG~~~VtAt~~g-~~~s~~ 88 (94)
T d1cwva1 15 NGKTAITVEFTVADFEGKPLAGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEG-QRQSVD 88 (94)
T ss_dssp SSSSCEEEEEEEECTTSCBCCSCEEEEECCTTCBSCEEEEECCTTSEEEEEEBCSSCEEEEEEEEETT-EEEEEE
T ss_pred CCcccEEEEEEEEcCCCCCcCCCEEEEEECCCcEEecceeEECCCEEEEEEEEeCCceEEEEEEEECC-ccCcEE
Confidence 55667889999999999999999999863321 1123589999999999863 233445555433 334333
>d1cwva2 b.1.14.1 (A:597-692) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
Back Show information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Invasin
species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=96.41 E-value=0.0044 Score=41.76 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=40.2
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecC
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNG 54 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~ 54 (141)
|..-..+++=+|.|.+|.||+|..|.+.-.........||.||.|...+.+
T Consensus 19 dg~~~~tlt~tv~D~~gnpv~g~~V~~~~~~g~~~~~tt~~~G~~t~~lts 69 (96)
T d1cwva2 19 DGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTS 69 (96)
T ss_dssp TSSCCEEEEEECBBTTSCBCCSCCEEEEESSSEECCCEECSSSEEEEEEEC
T ss_pred CCEeeEEEEEEEEcCCCCCCCCCEEEEEecCCcccccEECCCcEEEEEEEC
Confidence 445567888899999999999999998755423344678899999999864
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
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class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, alpha chain
species: Acinetobacter calcoaceticus, adp1 [TaxId: 471]
Probab=96.31 E-value=0.014 Score=44.17 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=48.0
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccCC--C------------------eeeceEec-CCceEEEE-ecCCC-------
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKDS--G------------------RFGFTLTR-GGGWFDML-VNGGG------- 56 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt~--~------------------~~G~TiTD-~DG~FsL~-V~~g~------- 56 (141)
...+.|+|+|+|.+|+||+||.|-+=... + ..+.+.|| +||+|.+. +.++.
T Consensus 43 G~~i~l~G~V~D~~g~Pi~~a~veiWqad~~G~Y~~~~~~~~~~~d~~f~g~~r~~t~~~~G~~~f~TI~Pg~Y~~r~~~ 122 (202)
T d2bura1 43 GQRIRLEGQVFDGLGLPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFNTIKPGAVPGRKGS 122 (202)
T ss_dssp SCEEEEEECEECTTSCBCSSCEEEEECCCTTSCCSSTTCCSCCCCCTTCCCEEEEECCTTTCCEEEEEECCCCCBCSTTC
T ss_pred CCEEEEEEEEECCCCCCccceEEEEEecCCcccccccccccccccCcccceEEEEeEeCCCCEEEEEEeecccccCCCCc
Confidence 45789999999999999999999882110 0 12446676 78999996 32221
Q ss_pred ----cEEEEEEecCccc-eEEEEEccC
Q psy4833 57 ----AVTLQFQRSPYRP-QTRTVFIPW 78 (141)
Q Consensus 57 ----~~tL~FSyiGY~s-qe~~V~~~~ 78 (141)
.+-+.+..-||.. ..-+++.+.
T Consensus 123 ~rp~HIH~~V~~~g~~~~L~TqlyF~~ 149 (202)
T d2bura1 123 TQAPHISLIIFARGINIGLHTRVYFDD 149 (202)
T ss_dssp BCCSCEEEEEECTTCSSCEEEEEEEGG
T ss_pred CCCCeEEEEEEeCCccccceeeeEcCC
Confidence 3345566667754 555555553
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]}
Back Show information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, alpha chain
species: Pseudomonas putida [TaxId: 303]
Probab=96.22 E-value=0.023 Score=42.88 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=34.0
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccCC--C-------------eeeceE-ecCCceEEEE
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKDS--G-------------RFGFTL-TRGGGWFDML 51 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt~--~-------------~~G~Ti-TD~DG~FsL~ 51 (141)
...++|+|+|+|.+|+||+||.|-+=... + .+|.+. ||.+|+|.+.
T Consensus 46 G~~i~l~G~V~D~~g~Pi~~A~veiWqad~~G~Y~~~~~~~~~~~~~gr~~~t~~~G~~~f~ 107 (200)
T d3pcca_ 46 GEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLH 107 (200)
T ss_dssp SCEEEEEEEEECTTSCBCTTCEEEEECCCTTSCCCCBCCTTSSBCSEEEEECCSSSCEEEEE
T ss_pred CCEEEEEEEEECCCCCCcCceEEEEEecCCCceeccCCCCccccCcccceeecCCCCeEEEE
Confidence 45789999999999999999999883111 0 124344 4467999997
>d1f00i1 b.1.14.1 (I:658-752) Intimin {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Intimin
species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.026 Score=37.84 Aligned_cols=50 Identities=10% Similarity=0.166 Sum_probs=38.2
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCCee--eceEecCCceEEEEecC
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRF--GFTLTRGGGWFDMLVNG 54 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~--G~TiTD~DG~FsL~V~~ 54 (141)
|..-..+++=+|.| +|.||+|..|...-..+.+ ....||.+|.+.+.+.+
T Consensus 16 dG~~~~t~tatv~D-~gnpv~g~~V~~~~~~g~l~~~~~~Td~~G~at~~lts 67 (95)
T d1f00i1 16 NGQDAITYTVKVMK-GDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTS 67 (95)
T ss_dssp SSCCCEEEEEEEEE-TTEECTTCEEEEEESSSEESCSEEECCTTSEEEEEEEC
T ss_pred cCcceEEEEEEEEE-CCcccCCcEEEEEECCCcEecceeEECCCcEEEEEEEc
Confidence 44566789999999 5999999999987443211 13688999999999864
>d1cwva3 b.1.14.1 (A:693-795) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
Back Show information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Invasin
species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=92.92 E-value=0.071 Score=36.07 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=37.3
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCC--eeeceEecCCceEEEEecC
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSG--RFGFTLTRGGGWFDMLVNG 54 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~--~~G~TiTD~DG~FsL~V~~ 54 (141)
|..-..+|+=+|.|.+|.||+|..|.+.-..+ .....+||.+|.|...+.+
T Consensus 22 dG~~~~tlt~tv~D~~GNpv~g~~v~~~~~~~~~~~~s~~td~~G~ytatlts 74 (103)
T d1cwva3 22 DGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDSYTATVVG 74 (103)
T ss_dssp TSCCCEEEEEECBCTTSCBCCSCCSEEEEEEESCCEECCCEECSSCEEEEEEC
T ss_pred CCeeEEEEEEEEEcCCCCCcCCCeEEEEeccCCccccceEeCCCCEEEEEEEc
Confidence 44556788889999999999999876642210 1123679999999999873
