Psyllid ID: psy4851

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--
Protein Sequence
MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW
Secondary Structure (PSIPRED)
cEEEcccHHHHHcccccccEEEccccccccHHHHHHHHHHHcccccccccHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEccccccccEEEEcccccccccHHHEEEEccccccccccHHHHHHcccccc
Coil and Loop (DISEMBL)
MIFALIkpliihhmrypqghfvralgpigdkdteNEVLLLehdvphskfsdlvlsylppmpw
Flexible Loop (DISEMBL)
MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEhdvphskfsdlvlsylppmpw
Low Complexity Region (SEG)
MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW
Disordered region (IsUnstruct)
*IFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSY******
Disordered Region (DISOPRED)
*IFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW
Disordered Region (DISEMBL)
MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW
Disordered Region (DISPRO)
MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	62	2.2.26 [Sep-21-2011]
Q9Y2L1	958	Exosome complex exonuclea	yes	N/A	0.774	0.050	0.729	9e-16
Q9CSH3	958	Exosome complex exonuclea	yes	N/A	0.774	0.050	0.708	3e-15
Q17632	961	Probable exosome complex	yes	N/A	0.774	0.049	0.583	2e-12
P37202	970	Exosome complex exonuclea	yes	N/A	0.709	0.045	0.568	2e-07
Q08162	1001	Exosome complex exonuclea	yes	N/A	0.709	0.043	0.568	2e-06
O14040	927	Dis3-like exonuclease C2C	no	N/A	0.806	0.053	0.44	0.0003

>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/48 (72%), Positives = 39/48 (81%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           RYP GHFVR LG +G+K+TE EVLLLEHDVPH  FS  VLS+LP MPW
Sbjct: 410 RYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 457

Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. DIS3 has both 3'-5' exonuclease and endonuclease activities.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: -

>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 39/48 (81%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           RYP GHFV+ LG +G+K+TE EVLLLEHDVPH  FS  VLS+LP MPW
Sbjct: 410 RYPNGHFVKNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPRMPW 457

Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. DIS3 has both 3'-5' exonuclease and endonuclease activities.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 OS=Caenorhabditis elegans GN=dis-3 PE=3 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 38/48 (79%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           +YP GH+VR++G +G ++TENEVLLLEHD+PH+ FS+ VL  LP   W
Sbjct: 419 KYPLGHYVRSIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPREEW 466

Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. dis-3 has both 3'-5' exonuclease and endonuclease activities.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 29/44 (65%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP 58
           RYP+GHFVR LG +  K+ E E LLLE+DV H  F   VL  LP
Sbjct: 433 RYPEGHFVRDLGEMETKEAETEALLLEYDVQHRPFPKAVLDCLP 476

Catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and cryptic unstable transcripts (CUTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and in RNA surveillance pathways, preventing translation of aberrant mRNAs. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. DIS3 has both 3'-5' exonuclease and endonuclease activities. The exonuclease activity of DIS3 is down-regulated upon association with Exo-9 possibly involving a conformational change in the catalytic domain and threading of the RNA substrate through the complex central channel. Structured substrates can be degraded if they have a 3' single-stranded extension sufficiently long (such as 35 nt poly(A)) to span the proposed complex inner RNA-binding path and to reach the exonuclease site provided by dis3 (By similarity). Implicated in mitotic control. Essential for cell division and spore germination. May be involved in regulating protein dephosphorylation during mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 27/44 (61%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP 58
           +YP GHFVR LG I     E E LLLEHDV +  FS  VL  LP
Sbjct: 461 KYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLP 504

Catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and cryptic unstable transcripts (CUTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and in RNA surveillance pathways, preventing translation of aberrant mRNAs. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. DIS3 has both 3'-5' exonuclease and endonuclease activities. The exonuclease activity of DIS3 is down-regulated upon association with Exo-9 possibly involving a conformational change in the catalytic domain and threading of the RNA substrate through the complex central channel. Structured substrates can be degraded if they have a 3' single-stranded extension sufficiently long (such as 35 nt poly(A)) to span the proposed complex inner RNA-binding path and to reach the exonuclease site provided by DIS3. Plays a role in mitotic control.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query: 13  HMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           + RYP G     LG I D +     LLLE+ +  S FSD VL+ LPP  W
Sbjct: 382 YSRYPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSDEVLNCLPPDDW 431

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	62
307199462	977	Exosome complex exonuclease RRP44 [Harpe	0.806	0.051	0.82	2e-18
156553452	985	PREDICTED: exosome complex exonuclease R	0.774	0.048	0.854	7e-18
332019034	976	Exosome complex exonuclease RRP44 [Acrom	0.774	0.049	0.833	1e-17
119113846	967	AGAP005191-PA [Anopheles gambiae str. PE	0.806	0.051	0.78	2e-17
195573451	957	GD21090 [Drosophila simulans] gi|1942006	0.774	0.050	0.791	3e-17
385719244	1005	FI19082p1 [Drosophila melanogaster]	0.774	0.047	0.791	4e-17
194909762	982	GG11280 [Drosophila erecta] gi|190656642	0.774	0.048	0.791	4e-17
380015637	971	PREDICTED: exosome complex exonuclease R	0.774	0.049	0.812	5e-17
24649634	982	Dis3, isoform A [Drosophila melanogaster	0.774	0.048	0.791	5e-17
15292611	982	SD10981p [Drosophila melanogaster]	0.774	0.048	0.791	5e-17

>gi|307199462|gb|EFN80075.1| Exosome complex exonuclease RRP44 [Harpegnathos saltator]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/50 (82%), Positives = 45/50 (90%)

Query: 13  HMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           H RYP GHFVRALG IGDK+TENEVLLLEHDVPHS+FSD VLS+LP +PW
Sbjct: 401 HSRYPLGHFVRALGNIGDKETENEVLLLEHDVPHSRFSDAVLSFLPKLPW 450

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553452|ref|XP_001601829.1| PREDICTED: exosome complex exonuclease RRP44-like [Nasonia vitripennis]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/48 (85%), Positives = 44/48 (91%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           RYP GHFVRALG IGDKDTENEVLLLEHDVPHS+FSD VLS+LP +PW
Sbjct: 404 RYPLGHFVRALGEIGDKDTENEVLLLEHDVPHSRFSDEVLSFLPKLPW 451

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019034|gb|EGI59568.1| Exosome complex exonuclease RRP44 [Acromyrmex echinatior]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 44/48 (91%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           RYP GHFVRALG IGDK+TENEVLLLEHDVPHS+FSD VLS+LP +PW
Sbjct: 404 RYPLGHFVRALGNIGDKETENEVLLLEHDVPHSRFSDAVLSFLPKLPW 451

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119113846|ref|XP_314089.3| AGAP005191-PA [Anopheles gambiae str. PEST] gi|116128315|gb|EAA09476.3| AGAP005191-PA [Anopheles gambiae str. PEST]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 45/50 (90%)

Query: 13  HMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           H RYPQGHFVRALGPIG K+TENEV+LLEHDVPHS+FS+ VL+ LP +PW
Sbjct: 402 HSRYPQGHFVRALGPIGSKETENEVILLEHDVPHSRFSEDVLACLPELPW 451

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195573451|ref|XP_002104707.1| GD21090 [Drosophila simulans] gi|194200634|gb|EDX14210.1| GD21090 [Drosophila simulans]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           RYP GHFVR+LGP+GD  TENEV+LLEHDVPH KFSD VLS+LP MPW
Sbjct: 417 RYPHGHFVRSLGPLGDTATENEVILLEHDVPHCKFSDEVLSFLPKMPW 464

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|385719244|gb|AFI71920.1| FI19082p1 [Drosophila melanogaster]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           RYP GHFVR+LGP+GD  TENEV+LLEHDVPH KFSD VLS+LP MPW
Sbjct: 440 RYPHGHFVRSLGPLGDMATENEVILLEHDVPHCKFSDEVLSFLPKMPW 487

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194909762|ref|XP_001982004.1| GG11280 [Drosophila erecta] gi|190656642|gb|EDV53874.1| GG11280 [Drosophila erecta]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           RYP GHFVR+LGP+GD  TENEV+LLEHDVPH KFSD VLS+LP MPW
Sbjct: 417 RYPHGHFVRSLGPLGDMATENEVILLEHDVPHCKFSDEVLSFLPKMPW 464

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015637|ref|XP_003691806.1| PREDICTED: exosome complex exonuclease RRP44-like [Apis florea]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/48 (81%), Positives = 42/48 (87%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           RYP GHFVRALG IGDK TENEV+LLEHD+PHS+FSD VLS LP MPW
Sbjct: 401 RYPLGHFVRALGEIGDKTTENEVILLEHDIPHSRFSDAVLSSLPKMPW 448

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24649634|ref|NP_651246.2| Dis3, isoform A [Drosophila melanogaster] gi|442620866|ref|NP_001262910.1| Dis3, isoform B [Drosophila melanogaster] gi|7301148|gb|AAF56281.1| Dis3, isoform A [Drosophila melanogaster] gi|440217834|gb|AGB96290.1| Dis3, isoform B [Drosophila melanogaster]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           RYP GHFVR+LGP+GD  TENEV+LLEHDVPH KFSD VLS+LP MPW
Sbjct: 417 RYPHGHFVRSLGPLGDMATENEVILLEHDVPHCKFSDEVLSFLPKMPW 464

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|15292611|gb|AAK93574.1| SD10981p [Drosophila melanogaster]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
           RYP GHFVR+LGP+GD  TENEV+LLEHDVPH KFSD VLS+LP MPW
Sbjct: 417 RYPHGHFVRSLGPLGDMATENEVILLEHDVPHCKFSDEVLSFLPKMPW 464

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	62
FB|FBgn0039183	983	Dis3 "Dis3" [Drosophila melano	0.774	0.048	0.791	2.5e-16
UNIPROTKB|F2Z2C0	559	DIS3 "Exosome complex exonucle	0.774	0.085	0.729	6.7e-15
UNIPROTKB|F1RHF7	752	DIS3 "Uncharacterized protein"	0.774	0.063	0.729	8.7e-15
UNIPROTKB|G3V1J5	796	DIS3 "Exosome complex exonucle	0.774	0.060	0.729	1.2e-14
UNIPROTKB|F1N1R4	951	DIS3 "Uncharacterized protein"	0.774	0.050	0.729	1.2e-14
RGD|1304646	565	Dis3 "DIS3 mitotic control hom	0.774	0.084	0.708	1.4e-14
UNIPROTKB|Q9Y2L1	958	DIS3 "Exosome complex exonucle	0.774	0.050	0.729	1.6e-14
ZFIN|ZDB-GENE-080213-3	950	dis3 "DIS3 mitotic control hom	0.774	0.050	0.729	3.3e-14
UNIPROTKB|E2RNY6	958	DIS3 "Uncharacterized protein"	0.774	0.050	0.708	3.3e-14
MGI|MGI:1919912	958	Dis3 "DIS3 mitotic control hom	0.774	0.050	0.708	4.3e-14

FB|FBgn0039183 Dis3 "Dis3" [Drosophila melanogaster (taxid:7227)]

 Score = 215 (80.7 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query:    15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
             RYP GHFVR+LGP+GD  TENEV+LLEHDVPH KFSD VLS+LP MPW
Sbjct:   417 RYPHGHFVRSLGPLGDMATENEVILLEHDVPHCKFSDEVLSFLPKMPW 464

GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS

GO:0006397 "mRNA processing" evidence=ISS

GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0071027 "nuclear RNA surveillance" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F2Z2C0 DIS3 "Exosome complex exonuclease RRP44" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 6.7e-15, P = 6.7e-15
 Identities = 35/48 (72%), Positives = 39/48 (81%)

Query:    15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
             RYP GHFVR LG +G+K+TE EVLLLEHDVPH  FS  VLS+LP MPW
Sbjct:   410 RYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 457

GO:0003723 "RNA binding" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

UNIPROTKB|F1RHF7 DIS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 8.7e-15, P = 8.7e-15
 Identities = 35/48 (72%), Positives = 39/48 (81%)

Query:    15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
             RYP GHFV+ LG +GDK+TE EVLLLEHDVPH  FS  VLS+LP MPW
Sbjct:   204 RYPNGHFVKNLGEVGDKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 251

GO:0071034 "CUT catabolic process" evidence=IEA

GO:0016075 "rRNA catabolic process" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|G3V1J5 DIS3 "Exosome complex exonuclease RRP44" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 35/48 (72%), Positives = 39/48 (81%)

Query:    15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
             RYP GHFVR LG +G+K+TE EVLLLEHDVPH  FS  VLS+LP MPW
Sbjct:   248 RYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 295

GO:0003723 "RNA binding" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

UNIPROTKB|F1N1R4 DIS3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 35/48 (72%), Positives = 39/48 (81%)

Query:    15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
             RYP GHFV+ LG +GDK+TE EVLLLEHDVPH  FS  VLS+LP MPW
Sbjct:   410 RYPNGHFVKNLGEVGDKETETEVLLLEHDVPHQAFSQAVLSFLPKMPW 457

GO:0071034 "CUT catabolic process" evidence=IEA

GO:0016075 "rRNA catabolic process" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

RGD|1304646 Dis3 "DIS3 mitotic control homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 195 (73.7 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 34/48 (70%), Positives = 39/48 (81%)

Query:    15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
             RYP GHFV+ LG +G+K+TE EVLLLEHDVPH  FS  VLS+LP MPW
Sbjct:   409 RYPNGHFVKNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 456

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISO

GO:0000176 "nuclear exosome (RNase complex)" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=ISO

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO

GO:0016075 "rRNA catabolic process" evidence=ISO

GO:0071034 "CUT catabolic process" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q9Y2L1 DIS3 "Exosome complex exonuclease RRP44" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 35/48 (72%), Positives = 39/48 (81%)

Query:    15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
             RYP GHFVR LG +G+K+TE EVLLLEHDVPH  FS  VLS+LP MPW
Sbjct:   410 RYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 457

GO:0003723 "RNA binding" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0006364 "rRNA processing" evidence=TAS

GO:0000178 "exosome (RNase complex)" evidence=TAS

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IMP

GO:0004519 "endonuclease activity" evidence=IMP

GO:0016075 "rRNA catabolic process" evidence=IMP

GO:0071034 "CUT catabolic process" evidence=IMP

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-080213-3 dis3 "DIS3 mitotic control homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 35/48 (72%), Positives = 38/48 (79%)

Query:    15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
             RYP GHFV+ LG  GDK+TE EVLLLEHDVPH  FS  VLS+LP MPW
Sbjct:   407 RYPNGHFVKNLGTAGDKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 454

GO:0003723 "RNA binding" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

UNIPROTKB|E2RNY6 DIS3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 195 (73.7 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 34/48 (70%), Positives = 39/48 (81%)

Query:    15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
             RYP GHFV+ LG +G+K+TE EVLLLEHDVPH  FS  VLS+LP MPW
Sbjct:   410 RYPNGHFVKNLGEVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 457

GO:0071034 "CUT catabolic process" evidence=IEA

GO:0016075 "rRNA catabolic process" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:1919912 Dis3 "DIS3 mitotic control homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 194 (73.4 bits), Expect = 4.3e-14, P = 4.3e-14
 Identities = 34/48 (70%), Positives = 39/48 (81%)

Query:    15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
             RYP GHFV+ LG +G+K+TE EVLLLEHDVPH  FS  VLS+LP MPW
Sbjct:   410 RYPNGHFVKNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPRMPW 457

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISO

GO:0000176 "nuclear exosome (RNase complex)" evidence=ISO

GO:0000178 "exosome (RNase complex)" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=ISO

GO:0004527 "exonuclease activity" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0016075 "rRNA catabolic process" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0071034 "CUT catabolic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q17632	RRP44_CAEEL	3, ., 1, ., 1, 3, ., -	0.5833	0.7741	0.0499	yes	N/A
Q08162	RRP44_YEAST	3, ., 1, ., 2, 6, ., -	0.5681	0.7096	0.0439	yes	N/A
P37202	DIS3_SCHPO	3, ., 1, ., 2, 6, ., -	0.5681	0.7096	0.0453	yes	N/A
Q9CSH3	RRP44_MOUSE	3, ., 1, ., 2, 6, ., -	0.7083	0.7741	0.0501	yes	N/A
Q9Y2L1	RRP44_HUMAN	3, ., 1, ., 2, 6, ., -	0.7291	0.7741	0.0501	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	62
COG0557	706	COG0557, VacB, Exoribonuclease R [Transcription]	2e-04

>gnl|CDD|223631 COG0557, VacB, Exoribonuclease R [Transcription]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVL 54
           R P G  V  LG +GD   + E +L +H +P  +F + VL
Sbjct: 192 RPPFGEVVEVLGDLGDPGADIEAILRDHGIPS-EFPEKVL 230

Length = 706

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	62
KOG2102|consensus	941		99.53
TIGR00358	654	3_prime_RNase VacB and RNase II family 3'-5' exori	99.39
PRK11642	813	exoribonuclease R; Provisional	99.26
TIGR02063	709	RNase_R ribonuclease R. This family consists of an	99.25
COG0557	706	VacB Exoribonuclease R [Transcription]	98.99
TIGR02062	639	RNase_B exoribonuclease II. This family consists o	98.98
PRK05054	644	exoribonuclease II; Provisional	98.85
PF08206	58	OB_RNB: Ribonuclease B OB domain; InterPro: IPR013	86.65
TIGR02063	709	RNase_R ribonuclease R. This family consists of an	85.02

>KOG2102|consensus

Probab=99.53  E-value=7.1e-15  Score=112.35  Aligned_cols=61  Identities=51%  Similarity=0.828  Sum_probs=58.9

Q ss_pred             CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCCC-CCC
Q psy4851           1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPP-MPW   62 (62)
Q Consensus         1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp~-~~w   62 (62)
                      +|+|.|++|+. +|+||.||+++.||..|+.++|+++||.+|++++.+|+++++.|||+ .||
T Consensus       401 ~~~~~I~~W~~-ts~~p~g~~v~~lG~i~~~~~e~~aLL~en~v~~~~f~~~~~~~lp~~~~~  462 (941)
T KOG2102|consen  401 RIVAAIDRWPR-TSLYPFGHLVRELGTIGDTETETEALLLENGVPHKPFSQALLDCLPRSHPW  462 (941)
T ss_pred             eEEEEeccccc-CCcccCceehhhccCcCCccchhhhhhhcCCCcccccCHHHHhcCCccCCC
Confidence            47999999998 99999999999999999999999999999999999999999999999 887

>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases

Probab=99.39  E-value=6.6e-13  Score=98.18  Aligned_cols=58  Identities=19%  Similarity=0.209  Sum_probs=54.3

Q ss_pred             CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCCCC
Q psy4851           1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPM   60 (62)
Q Consensus         1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp~~   60 (62)
                      +|+|+|++||. .+..|.|+|+++||..||+.+|+.+||.+|||+. +||++|++|++..
T Consensus       125 ~V~v~i~~~p~-~~~~~~g~i~~~lG~~~d~~~~~~~il~~~~i~~-~f~~~v~~~a~~~  182 (654)
T TIGR00358       125 KVVVELTEYPL-RRNLFYGEITQILGNNDDPLIPWWVTLARHEIPF-EFPDGVEQQAAKL  182 (654)
T ss_pred             EEEEEEccCCC-CCCCceEEEEEEEcCCCCcccHHHHHHHHcCcCC-CCCHHHHHHHHhc
Confidence            47899999998 8999999999999999999999999999999997 6999999998753

This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.

>PRK11642 exoribonuclease R; Provisional

Probab=99.26  E-value=1.2e-11  Score=93.75  Aligned_cols=58  Identities=14%  Similarity=0.206  Sum_probs=54.1

Q ss_pred             CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCCCC
Q psy4851           1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPM   60 (62)
Q Consensus         1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp~~   60 (62)
                      +|+|+|++||. ....|.|+|+++||..+|+.+|+.+||++|+|+. +||++|++++...
T Consensus       191 ~V~v~I~~~p~-~~~~~~g~iv~vLG~~~d~~~d~~~il~~~~ip~-~Fp~~v~~ea~~~  248 (813)
T PRK11642        191 VVVVELTQRPT-RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGL  248 (813)
T ss_pred             EEEEEEecCCC-cCCCCCEEEEEEecCCCCcchHHHHHHHHcCCCC-CCCHHHHHHHHhc
Confidence            47899999998 8999999999999999999999999999999998 5999999998753

>TIGR02063 RNase_R ribonuclease R

Probab=99.25  E-value=1.1e-11  Score=92.06  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=53.6

Q ss_pred             CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCCC
Q psy4851           1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPP   59 (62)
Q Consensus         1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp~   59 (62)
                      .|+|+|++||. .+.+|.|+|+++||..||..+|+.++|.+|||+. +||++|++++..
T Consensus       177 ~v~v~i~~~p~-~~~~~~g~i~~~lg~~~d~~~~~~~il~~~~i~~-~f~~~v~~~a~~  233 (709)
T TIGR02063       177 KVLVEITKYPD-RNRPAIGKVVEILGHADDPGIDILIIIRKHGIPY-EFPEEVLDEAAK  233 (709)
T ss_pred             EEEEEEccCCC-CCCCceEEEEEEeCCCCcccchHHHHHHHcCcCC-CCCHHHHHHHHh
Confidence            47899999998 8999999999999999999999999999999998 699999998764

This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.

>COG0557 VacB Exoribonuclease R [Transcription]

Probab=98.99  E-value=8.8e-10  Score=82.27  Aligned_cols=58  Identities=28%  Similarity=0.475  Sum_probs=54.4

Q ss_pred             CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCCCC
Q psy4851           1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPM   60 (62)
Q Consensus         1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp~~   60 (62)
                      +++++|++|+. ++.+|.|+++++||..++..+++.++|++|++++. ||++|++|+...
T Consensus       179 ~v~~~i~~~~~-~~~~~~g~v~~~lG~~~~~~~~~~~il~~~~i~~~-f~~~v~~~a~~~  236 (706)
T COG0557         179 LVVVEITRWPD-TSRPPFGEVVEVLGDLGDPGADIEAILRDHGIPSE-FPEKVLDEAAAL  236 (706)
T ss_pred             EEEEEecccCC-cCCCCceeEEEeecCCCCcchhHHHHHHHcCCCCC-CCHHHHHHHHhc
Confidence            47899999998 89999999999999999999999999999999995 999999998753

>TIGR02062 RNase_B exoribonuclease II

Probab=98.98  E-value=1.2e-09  Score=81.09  Aligned_cols=57  Identities=14%  Similarity=0.009  Sum_probs=50.5

Q ss_pred             CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCC
Q psy4851           1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP   58 (62)
Q Consensus         1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp   58 (62)
                      +++|+|++||....+.|.|+|+++||..+|+.+++.+||++|+|+. +||+++++++.
T Consensus       124 ~V~v~I~~~p~~~~~~~~~~I~~vLG~~~d~~~d~~~il~~~~l~~-~f~~~v~~ea~  180 (639)
T TIGR02062       124 WAVAELRRHPLKGDRSFYAELTQYITFADDHLAPWWVTLARHNLER-EEPDGVADEML  180 (639)
T ss_pred             EEEEEEeccCCCCCCCceEEEEEEeCCCCCCccHHHHHHHHcCcCC-CCCHHHHHhhh
Confidence            3789999999732356999999999999999999999999999998 59999998764

This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.

>PRK05054 exoribonuclease II; Provisional

Probab=98.85  E-value=5.3e-09  Score=77.70  Aligned_cols=53  Identities=11%  Similarity=0.009  Sum_probs=48.1

Q ss_pred             CEEEEEeecCCCCC-CCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHh
Q psy4851           1 MIFALIKPLIIHHM-RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLS   55 (62)
Q Consensus         1 ~~~a~I~~W~~~~s-~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~   55 (62)
                      +++|+|++||. .. +.|.|+|+++||..+|+.+|+.+||++|+|+. +||+++++
T Consensus       127 ~V~v~i~~~p~-~~~~~~~g~i~~~lG~~~d~~~d~~~il~~~~l~~-~f~~~~~~  180 (644)
T PRK05054        127 WVVAELRRHPL-KGDRGFYAEITQFITDADDHFAPWWVTLARHNLER-EAPAGGVA  180 (644)
T ss_pred             EEEEEEecCCC-CCCCCceEEEEEEECCCCCCccHHHHHHHHcCCCC-CCCchhhh
Confidence            47899999997 43 45999999999999999999999999999998 59999986

>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies

Probab=86.65  E-value=0.51  Score=25.00  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=17.8

Q ss_pred             EEEEEeecCCCCCCCCceEEEee
Q psy4851           2 IFALIKPLIIHHMRYPQGHFVRA   24 (62)
Q Consensus         2 ~~a~I~~W~~~~s~~P~G~iv~~   24 (62)
                      ++|+|.. +. ..+.|.|+|+++
T Consensus        38 V~v~i~~-~~-~~~~~eg~vv~V   58 (58)
T PF08206_consen   38 VLVRITP-PS-RGKRPEGEVVEV   58 (58)
T ss_dssp             EEEEEEE-SS-SEEEEEEEEEE-
T ss_pred             EEEEEec-CC-CCCCCCEEEEeC
Confidence            6889998 76 889999999985

; PDB: 2ID0_D 2IX1_A 2IX0_A.

>TIGR02063 RNase_R ribonuclease R

Probab=85.02  E-value=1.2  Score=33.80  Aligned_cols=28  Identities=11%  Similarity=0.011  Sum_probs=23.7

Q ss_pred             EEEEEeecCCCCCCCCceEEEeecCCCCC
Q psy4851           2 IFALIKPLIIHHMRYPQGHFVRALGPIGD   30 (62)
Q Consensus         2 ~~a~I~~W~~~~s~~P~G~iv~~LG~~gd   30 (62)
                      |+|+|..|+. ..+.|.|+|+++||...+
T Consensus       109 Vlv~I~~~~~-~~~~~eg~Vv~Il~r~~~  136 (709)
T TIGR02063       109 VLVRITGKPD-GGDRFEARVIKILERAND  136 (709)
T ss_pred             EEEEEecccC-CCCCceEEEEEEEeeCCC
Confidence            6799999975 567789999999998764

This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	62
2vnu_D	760	Crystal Structure Of Sc Rrp44 Length = 760		8e-08
4ifd_J	1003	Crystal Structure Of An 11-subunit Eukaryotic Exoso		1e-07
2wp8_J	977	Yeast Rrp44 Nuclease Length = 977		1e-07

>pdb|2VNU|D Chain D, Crystal Structure Of Sc Rrp44 Length = 760

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 27/44 (61%)
Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP 58
           +YP GHFVR LG I     E E LLLEHDV +  FS  VL  LP
Sbjct: 220 KYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLP 263

>pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 1003

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 27/44 (61%)
Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP 58
           +YP GHFVR LG I     E E LLLEHDV +  FS  VL  LP
Sbjct: 463 KYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLP 506

>pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease Length = 977

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 27/44 (61%)
Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP 58
           +YP GHFVR LG I     E E LLLEHDV +  FS  VL  LP
Sbjct: 437 KYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLP 480

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	62
2wp8_J	977	Exosome complex exonuclease DIS3; nucleus, hydrola	3e-16
2vnu_D	760	Exosome complex exonuclease RRP44; hydrolase-RNA c	4e-16
2id0_A	644	Exoribonuclease 2; RNAse, exonuclease, hydrolyase,	3e-04
2r7d_A	469	Ribonuclease II family protein; structural genomic	7e-04

>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 977

 Score = 69.4 bits (170), Expect = 3e-16
 Identities = 25/47 (53%), Positives = 27/47 (57%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMP 61
           +YP GHFVR LG I     E E LLLEHDV +  FS  VL  LP   
Sbjct: 437 KYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEG 483

>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Length = 760

 Score = 68.9 bits (169), Expect = 4e-16
 Identities = 25/47 (53%), Positives = 27/47 (57%)

Query: 15  RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMP 61
           +YP GHFVR LG I     E E LLLEHDV +  FS  VL  LP   
Sbjct: 220 KYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEG 266

>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Length = 644

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 1/46 (2%)

Query: 13  HMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP 58
             R       + +    D      V L  H++   +  D V + + 
Sbjct: 139 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATEML 183

>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Length = 469

 Score = 34.6 bits (80), Expect = 7e-04
 Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 10 IIHHMRYPQGHFVRALGPIGDKDTENEVLL---LEHDVPHSKFSDLVLSYLPPMPW 62
          ++   R  +   +R L      +  + +LL   +  +     ++D + + L  +  
Sbjct: 16 LLARGRADKSRVLRDLKLPETPEAAHALLLRLGVWDEART-PYADRLRAALNAVEL 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	62
2vnu_D	760	Exosome complex exonuclease RRP44; hydrolase-RNA c	99.59
2wp8_J	977	Exosome complex exonuclease DIS3; nucleus, hydrola	99.56
2id0_A	644	Exoribonuclease 2; RNAse, exonuclease, hydrolyase,	99.21
2r7d_A	469	Ribonuclease II family protein; structural genomic	94.05

>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16

Probab=99.59  E-value=2.1e-15  Score=111.62  Aligned_cols=59  Identities=46%  Similarity=0.661  Sum_probs=55.9

Q ss_pred             CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCCCC
Q psy4851           1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPM   60 (62)
Q Consensus         1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp~~   60 (62)
                      +|+|+|++||. .+.+|.|+|+++||..||+++|+.+||.+|||+..+||++|++|+|..
T Consensus       207 ~vvv~i~~~p~-~~~~p~G~i~~~LG~~~d~~~e~~~il~~~~l~~~~F~~~vl~~~~~~  265 (760)
T 2vnu_D          207 RIVISIDSWPT-THKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAE  265 (760)
T ss_dssp             EEEEEEEECCT-TCSSCEEEEEEEEEESSCSHHHHHHHHHHTTCCCSCCCHHHHTTSCTT
T ss_pred             EEEEEEeeccC-CCCCCcEEEEEEeCCCCCchhHHHHHHHHCCCCCcCCCHHHHHHHHhc
Confidence            37999999998 899999999999999999999999999999999877999999999865

>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}

Probab=99.56  E-value=4.6e-15  Score=112.44  Aligned_cols=61  Identities=46%  Similarity=0.713  Sum_probs=57.2

Q ss_pred             CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCCCC--CC
Q psy4851           1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPM--PW   62 (62)
Q Consensus         1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp~~--~w   62 (62)
                      .|+|+|++||. .+++|.|+|+++||..||+++|+.+||.+|||++.+||++|++|||..  +|
T Consensus       424 ~vvv~I~~wp~-~~~~p~G~iv~~LG~~~d~~~e~~~il~~~~l~~~~Fp~~vl~~~~~~~~~~  486 (977)
T 2wp8_J          424 RIVISIDSWPT-THKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDW  486 (977)
T ss_dssp             EEEEEEEECCT-TCSSCEEEEEEEEEESSCSHHHHHHHHHHTTCCCSCCCHHHHTTSCTTGGGC
T ss_pred             EEEEEEeeccC-CCCCccEEEEEEeCCCCCcchhHHHHHHHcCCCcccCCHHHHHHHHhccccc
Confidence            37999999998 899999999999999999999999999999999877999999999976  55

>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A

Probab=99.21  E-value=5.8e-12  Score=91.94  Aligned_cols=57  Identities=12%  Similarity=-0.008  Sum_probs=52.2

Q ss_pred             CEEEEEeecCCCCCCCC-ceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCCC
Q psy4851           1 MIFALIKPLIIHHMRYP-QGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPP   59 (62)
Q Consensus         1 ~~~a~I~~W~~~~s~~P-~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp~   59 (62)
                      +|+|+|++||. .+.+| .|+|+++||..||+.+|+.++|.+||++. +||+++++++|.
T Consensus       127 ~v~v~i~~~p~-~~~~p~~g~i~~~LG~~~d~~~e~~~~l~~~~l~~-~fp~~~~~~~~~  184 (644)
T 2id0_A          127 WAVAEMRRHPL-KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATEMLD  184 (644)
T ss_dssp             EEEEEEEECGG-GTCSSCEEEEEEEEECTTCTTHHHHHHHHHTTCCC-SCCCCCCCCCCC
T ss_pred             EEEEEEecCcC-CCCCCceEEEEEEeCCCCCccchHHHHHHHcCCCC-CCChHHhhcCCc
Confidence            37899999998 78899 99999999999999999999999999998 599998877653

>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A

Probab=94.05  E-value=0.0082  Score=42.53  Aligned_cols=36  Identities=8%  Similarity=-0.007  Sum_probs=31.3

Q ss_pred             CCCCceEEEeecCCCCChHHHHHH-------------HHHhCCCCCCCCc
Q psy4851          14 MRYPQGHFVRALGPIGDKDTENEV-------------LLLEHDVPHSKFS   50 (62)
Q Consensus        14 s~~P~G~iv~~LG~~gd~e~E~~a-------------IL~e~~i~~~~F~   50 (62)
                      .+.|.|+|+++||..++..++.+.             ++.+||++. .||
T Consensus        20 ~~~~~g~i~~~LG~~~~~~~~~~lL~~~G~~~~~~~~~~~~~~lp~-~fp   68 (469)
T 2r7d_A           20 GRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAAL-NAV   68 (469)
T ss_dssp             TSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTCCC-SCC
T ss_pred             CCCcceeEeeecCCCCChhhHHHHHHhcCCCCchhhHHHHHcCCCC-CCc
Confidence            467999999999999999999854             667889998 599

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	62
d2vnud1	95	b.40.4.5 (D:400-494) Exosome complex exonuclease R	1e-10
d2r7da2	401	b.40.4.16 (A:3-403) Ribonuclease II family protein	9e-04

>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 95

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Exosome complex exonuclease RRP44
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 49.5 bits (118), Expect = 1e-10
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPH 46
          +YP GHFVR LG I     E E LLLEHDV +
Sbjct: 62 KYPLGHFVRDLGTIESAQAETEALLLEHDVEY 93

>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} Length = 401

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Ribonuclease II family protein DR0020
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 33.0 bits (74), Expect = 9e-04
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 15 RYPQGHFVRALGPIGDKDTENEVLLLEH--DVPHSKFSDLVLSYLPPMPW 62
          R  +   +R L      +  + +LL     D   + ++D + + L  +  
Sbjct: 19 RADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAALNAVEL 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	62
d2vnud1	95	Exosome complex exonuclease RRP44 {Saccharomyces c	99.71
d2ix0a1	90	Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5	99.34
d2r7da2	401	Ribonuclease II family protein DR0020 {Deinococcus	94.98
d2odgc1	46	Inner nuclear membrane protein emerin {Human (Homo	88.05

>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Exosome complex exonuclease RRP44
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.71  E-value=5.1e-18  Score=97.81  Aligned_cols=47  Identities=45%  Similarity=0.655  Sum_probs=44.6

Q ss_pred             CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCCCCC
Q psy4851           1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSK   48 (62)
Q Consensus         1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~   48 (62)
                      +|+|+|++|+. .+++|.|+|+++||..||+++|+++||++|||++++
T Consensus        49 ~Vvv~I~~w~~-~~~~P~G~i~~vLG~~gd~~~e~~~il~~~~ip~~p   95 (95)
T d2vnud1          49 RIVISIDSWPT-THKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRP   95 (95)
T ss_dssp             EEEEEEEECCT-TCSSCEEEEEEEEEESSCSHHHHHHHHHHTTCCCSC
T ss_pred             EEEEEEeecCC-CCCCCCEEEEEEecCCCCcHHHHHHHHHHcCCCCCC
Confidence            48999999998 899999999999999999999999999999999863

>d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Exoribonuclease 2, RNB
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=9.2e-13  Score=74.73  Aligned_cols=45  Identities=13%  Similarity=-0.020  Sum_probs=40.1

Q ss_pred             CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCC
Q psy4851           1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVP   45 (62)
Q Consensus         1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~   45 (62)
                      .++|+|++||.++.+.|.|+|+++||+.+|+.+|+.++|++|++|
T Consensus        45 ~Vvvei~~~P~~~~~~~~g~I~evlG~~~Dp~~e~~~~la~~~Lp   89 (90)
T d2ix0a1          45 WAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE   89 (90)
T ss_dssp             EEEEEEEECGGGTCSSCEEEEEEECCCTTCTTHHHHHHHHHTTCC
T ss_pred             EEEEEEEeCCCCCCCCceEEEEEEEecCCCCCCcHHHHHHHcCCC
Confidence            379999999973444568999999999999999999999999997

>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Ribonuclease II family protein DR0020
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.98  E-value=0.0031  Score=42.06  Aligned_cols=46  Identities=17%  Similarity=0.241  Sum_probs=35.4

Q ss_pred             CCCCCceEEEeecCCCCChHHHHHHHHHhCCC---CCCCCcHHHHhhCCC
Q psy4851          13 HMRYPQGHFVRALGPIGDKDTENEVLLLEHDV---PHSKFSDLVLSYLPP   59 (62)
Q Consensus        13 ~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i---~~~~F~~~vl~~lp~   59 (62)
                      .++.|.|+|+++||..++++++...+ .+.|+   ...+||+++++++..
T Consensus        17 ~~~~~~~~i~~~lg~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~~   65 (401)
T d2r7da2          17 RGRADKSRVLRDLKLPETPEAAHALL-LRLGVWDEARTPYADRLRAALNA   65 (401)
T ss_dssp             TTSCSCCHHHHHTTCCCSHHHHHHHH-HHHTSSCTTCCCHHHHTTCCCSC
T ss_pred             cCCCCCccchhhcCCCCCcchHHHHH-HHhCCCcccccCCcHHHHHHHhh
Confidence            46799999999999999999988655 55554   223588888877664

>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: LEM domain
family: LEM domain
domain: Inner nuclear membrane protein emerin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.05  E-value=0.21  Score=24.08  Aligned_cols=19  Identities=37%  Similarity=0.538  Sum_probs=16.7

Q ss_pred             hHHHHHHHHHhCCCCCCCC
Q psy4851          31 KDTENEVLLLEHDVPHSKF   49 (62)
Q Consensus        31 ~e~E~~aIL~e~~i~~~~F   49 (62)
                      .++|+..+|.+|||++.+-
T Consensus         7 Sd~El~~lL~~y~I~HGPv   25 (46)
T d2odgc1           7 SDTELTTLLRRYNIPHGPV   25 (46)
T ss_dssp             CHHHHHHHHHHTTCCCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCc
Confidence            4789999999999999764