Psyllid ID: psy4871
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | 2.2.26 [Sep-21-2011] | |||||||
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.742 | 0.709 | 0.257 | 2e-38 | |
| B4QBN3 | 488 | Facilitated trehalose tra | N/A | N/A | 0.753 | 0.762 | 0.268 | 6e-36 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.757 | 0.464 | 0.263 | 1e-35 | |
| B4HNS1 | 488 | Facilitated trehalose tra | N/A | N/A | 0.746 | 0.756 | 0.274 | 2e-35 | |
| Q8MKK4 | 488 | Facilitated trehalose tra | no | N/A | 0.753 | 0.762 | 0.263 | 4e-35 | |
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | N/A | 0.748 | 0.732 | 0.25 | 7e-35 | |
| Q7PIR5 | 793 | Facilitated trehalose tra | no | N/A | 0.791 | 0.493 | 0.246 | 1e-34 | |
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.842 | 0.825 | 0.240 | 1e-32 | |
| Q291H8 | 868 | Facilitated trehalose tra | no | N/A | 0.753 | 0.428 | 0.258 | 2e-32 | |
| B4GAP7 | 869 | Facilitated trehalose tra | N/A | N/A | 0.753 | 0.428 | 0.258 | 2e-32 |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 190/373 (50%), Gaps = 6/373 (1%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ + G S A+++P L + + + ++ GSWV I+ + + I G L+ +
Sbjct: 65 LGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLVGGILGGPLIEYL 124
Query: 117 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR 176
GRK ++L T SW++ + V + V R L GFS+ + P+YLGE + +R
Sbjct: 125 GRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVR 184
Query: 177 GTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQ 236
GT+G L ++GIL +V G+ + + +P+ F + +PE+P +Y + +
Sbjct: 185 GTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPETPRWYVSRGR 244
Query: 237 EGKAIESLKWLRNKTADQVQSELQ-IIK--QNTSKNVERTNFREFMGRSNMKAFVFMAFL 293
+ +A ++L+WLR K AD V EL+ IIK Q+ ++ ++ + + ++N+K + L
Sbjct: 245 DDRARKALQWLRGKKAD-VDPELKGIIKSHQDAERHASQSAMLDLLKKTNLKPLLISLGL 303
Query: 294 AVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLF 353
F+ +G+ ++I Y IF + + + + +I+ ++ ++ F +T IDR GR++L
Sbjct: 304 MFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATLLIDRLGRKMLL 363
Query: 354 LVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSE 413
+S + G ++YV ++ + W+P S + + F+LGFGP+ ++ E
Sbjct: 364 YISDIAMIITLMTLGGFFYVKNN-GGDVSHIGWLPLASFVIFVLGFSLGFGPIPWLMMGE 422
Query: 414 YFSSNMKAVSCAV 426
++ + +V
Sbjct: 423 ILPGKIRGSAASV 435
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 191/383 (49%), Gaps = 11/383 (2%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ + G A+++P L + + + ++ + GSWV I+ + I G L+ +
Sbjct: 37 LCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYL 96
Query: 117 GRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
GR+ ++L T P +S +IA + +V+ + R L GF + + P+YLGE + +
Sbjct: 97 GRRTTILATAVPFIVSSLLIAC-AVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQPEV 155
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 235
RGT+G L ++GIL YV GS +++ +P+ F + + +PE+P ++ +
Sbjct: 156 RGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIIIPETPRWFVNRG 215
Query: 236 QEGKAIESLKWLRNKTADQVQSELQIIKQNTSK---NVERTNFREFMGRSNMKAFVFMAF 292
QE +A ++LKWLR K AD V+ EL+ + Q+ ++ R E R N+K
Sbjct: 216 QEERARKALKWLRGKEAD-VEPELKDLMQSQAEADSQARRNTCLELFKRINLKPLSISLG 274
Query: 293 LAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVL 352
L F+ F+G+ ++I Y IF + + + S+ +I+ I+ + F IDR GR++L
Sbjct: 275 LMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGILLIDRLGRKIL 334
Query: 353 FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLS 412
+S L I G ++Y ++ + W+P + + F+LGFGP+ ++
Sbjct: 335 LYISDIAMILTLSILGGFFYCKAH-GPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMG 393
Query: 413 EYFSSNMKAVSCAVI---NILCT 432
E + ++ + +V+ N CT
Sbjct: 394 EILPAKIRGPAASVVTAFNWFCT 416
|
Fails to transport trehalose. Drosophila simulans (taxid: 7240) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 191/383 (49%), Gaps = 9/383 (2%)
Query: 57 CIAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR 115
+ + G S A+++P L + + + ++ GSWV I+ + I G L+
Sbjct: 353 SLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLAGGILGGPLIEY 412
Query: 116 IGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
+GRK ++L T SW++ + V + V R L GFS+ + P+YLGE + +
Sbjct: 413 LGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQPEV 472
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 235
RGT+G L ++GIL +V G + + +PI F + +PE+P +Y +
Sbjct: 473 RGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRG 532
Query: 236 QEGKAIESLKWLRNKTADQVQSELQ-IIK--QNTSKNVERTNFREFMGRSNMKAFVFMAF 292
++ +A ++L+WLR K AD V EL+ IIK Q+ ++ ++ + M ++N+K +
Sbjct: 533 RDDRARKALQWLRGKKAD-VDPELKGIIKSHQDAERHASQSAMLDLMKKANLKPLLISLG 591
Query: 293 LAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVL 352
L F+ +G+ ++I Y IF + + + + +I+ ++ ++ F +T IDR GR++L
Sbjct: 592 LMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATMLIDRLGRKML 651
Query: 353 FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLS 412
+S + G ++YV Q ++ W+P + + + F+LGFGP+ ++
Sbjct: 652 LYISDVAMIITLMTLGGFFYVKNSGQ-DVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMG 710
Query: 413 EYFSSNMKAVSCAV---INILCT 432
E ++ + +V N CT
Sbjct: 711 EILPGKIRGSAASVATAFNWSCT 733
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 194/386 (50%), Gaps = 17/386 (4%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ + G A+++P L + + + ++ + GSWV I+ + I G L+ +
Sbjct: 37 LCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYL 96
Query: 117 GRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
GR+ ++L T P +S +IA + +V+ + R L GF + + P+YLGE + +
Sbjct: 97 GRRNTILATAVPFIVSSLLIAC-AVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQPEV 155
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLI---IPIIFTVTFMFMPESPYFYA 232
RGT+G L ++GIL YV GS +MN+ + + +P+ F + + +PE+P ++
Sbjct: 156 RGTLGLLPTALGNIGILVCYVAGS---FMNWSILAFLGAALPVPFLILMIIIPETPRWFV 212
Query: 233 IKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK---NVERTNFREFMGRSNMKAFVF 289
+ QE +A ++LKWLR K AD V+ EL+ + Q+ ++ R E R N+K
Sbjct: 213 NRGQEERARKALKWLRGKEAD-VEPELKDLMQSQAEADSQATRNTCLELFKRINLKPLSI 271
Query: 290 MAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGR 349
L F+ F+G+ ++I Y IF + + + S+ +I+ I+ + F IDR GR
Sbjct: 272 SLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGIILIDRLGR 331
Query: 350 RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 409
++L VS L I G ++Y ++ + W+P + + F+LGFGP+
Sbjct: 332 KILLYVSDIAMILTLSILGGFFYCKAH-GPDVSHLGWLPLSCFVIYILGFSLGFGPIPWL 390
Query: 410 LLSEYFSSNMKAVSCAVI---NILCT 432
++ E + ++ + +V+ N CT
Sbjct: 391 MMGEILPAKIRGPAASVVTAFNWFCT 416
|
Fails to transport trehalose. Drosophila sechellia (taxid: 7238) |
| >sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 191/383 (49%), Gaps = 11/383 (2%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ + G A+++P L + + + ++ + GSWV I+ + I G L+ +
Sbjct: 37 LCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYL 96
Query: 117 GRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
GR+ ++L T P +S +IA + +V+ + R L GF + + P+YLGE + +
Sbjct: 97 GRRSTILATAVPFIVSSLLIAC-AVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQPEV 155
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 235
RGT+G L ++GIL YV GS +++ +P+ F + + +PE+P ++ +
Sbjct: 156 RGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIIIPETPRWFVNRG 215
Query: 236 QEGKAIESLKWLRNKTADQVQSELQIIKQ---NTSKNVERTNFREFMGRSNMKAFVFMAF 292
QE +A ++LKWLR K AD V+ EL+ + Q + + + E R+N+K
Sbjct: 216 QEERARKALKWLRGKEAD-VEPELKELMQSQADADRQATQNTCLELFKRNNLKPLSISLG 274
Query: 293 LAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVL 352
L F+ F+G+ ++I Y IF + + + S+ +I+ ++ + F IDR GR++L
Sbjct: 275 LMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVGVVNFFATFMGIILIDRLGRKIL 334
Query: 353 FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLS 412
VS + I G ++Y ++ + W+P + + F+LGFGP+ ++
Sbjct: 335 LYVSDIAMIVTLSILGGFFYCKAH-GPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMG 393
Query: 413 EYFSSNMKAVSCAVI---NILCT 432
E + ++ + +V+ N CT
Sbjct: 394 EILPAKIRGPAASVVTAFNWFCT 416
|
Fails to transport trehalose. Drosophila melanogaster (taxid: 7227) |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 190/380 (50%), Gaps = 10/380 (2%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG 117
+ + G S +++P + L+ + ++ E +WV ++ + + I G L+ +G
Sbjct: 60 VGSMNVGFSSGYTSPAV---LTMNITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLG 116
Query: 118 RKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRG 177
RK +++ T T W++ + +V+ ++ R + G + + + P+Y+GE + +RG
Sbjct: 117 RKKTIMGTAVPFTIGWMLIANAINVVMVFAGRVICGVCVGIVSLAFPVYIGETIQPEVRG 176
Query: 178 TIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQE 237
+G L + GIL +++GS L + N + IP+ F + + PE+P +Y K +
Sbjct: 177 ALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILTPETPRWYVSKARV 236
Query: 238 GKAIESLKWLRNKTADQVQSELQ--IIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAV 295
+A +SL+WLR K + ++ E++ I Q S F++ + + A + L +
Sbjct: 237 QEARKSLRWLRGKNVN-IEKEMRDLTISQTESDRTGGNAFKQLFSKRYLPAVMISLGLML 295
Query: 296 FRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLV 355
F+ TG+ ++I YA +IF S + + + SI+ ++ +S F +T IDR GR+VL +
Sbjct: 296 FQQLTGINAVIFYAASIFQMSGSSVDENLASIIIGVVNFISTFIATMLIDRLGRKVLLYI 355
Query: 356 SSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYF 415
SS G Y+Y+ + ++ W+P + + + F++GFGP+ +L E
Sbjct: 356 SSVAMITTLLALGAYFYLK-QNHIDVTAYGWLPLACLVIYVLGFSIGFGPIPWLMLGEIL 414
Query: 416 SSNMKAVSCAV---INILCT 432
S ++ + ++ N CT
Sbjct: 415 PSKIRGTAASLATGFNWTCT 434
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
| >sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 191/397 (48%), Gaps = 6/397 (1%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ + G S A+++P L + + + ++ GSWV I+ + I G ++ +
Sbjct: 341 LGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLAGGILGGPMIEYL 400
Query: 117 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR 176
GRK ++L T SW++ + V + V R L G + + P+YLGE + +R
Sbjct: 401 GRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIASLSLPVYLGETVQPEVR 460
Query: 177 GTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQ 236
GT+G L ++GIL +V G L + +PI F + +PE+P +Y +N+
Sbjct: 461 GTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRNR 520
Query: 237 EGKAIESLKWLRNKTADQVQSELQII---KQNTSKNVERTNFREFMGRSNMKAFVFMAFL 293
E +A ++L+WLR + AD V+ EL+ I Q+ ++ + + + ++N+K + L
Sbjct: 521 EDRARKALQWLRGRKAD-VEPELKGISKSHQDAERHASSSAMLDLLNKANLKPLLISLGL 579
Query: 294 AVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLF 353
F+ +G+ ++I Y IF S+ + + +I+ ++ ++ F +T IDR GR++L
Sbjct: 580 MFFQQLSGINAVIFYTVQIFQSAGSTIDEKLCTIIVGVVNFIATFIATVLIDRLGRKILL 639
Query: 354 LVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSE 413
+S + G ++Y+ ++ W+P + + V F+LGFGP+ ++ E
Sbjct: 640 YISDVAMIITLMTLGTFFYMKNNGD-DVSEIGWLPLAAFVVFVVGFSLGFGPIPWLMMGE 698
Query: 414 YFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450
++ + +V + + K F + IG
Sbjct: 699 ILPGKIRGSAASVATAFNWSCTFVVTKTFADITASIG 735
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Anopheles gambiae (taxid: 7165) |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/453 (24%), Positives = 214/453 (47%), Gaps = 37/453 (8%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ + G + A+++P L + + + ++ E SWV I+ + I G + +
Sbjct: 52 MGSMVVGFASAYTSPALVSMQNTTITSFKVTEQEASWVGGIMPLAGLAGGIAGGPFIEYL 111
Query: 117 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR 176
GRK ++L T +W++ ++ S+ + R L GF + + P+YLGE + +R
Sbjct: 112 GRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSLPVYLGETVQPEVR 171
Query: 177 GTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQ 236
GT+G L ++GIL +V G +++ I+PI F V + +PE+P ++ + +
Sbjct: 172 GTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLLIPETPRWFVTRGR 231
Query: 237 EGKAIESLKWLRNKTADQVQSELQ-IIKQN--TSKNVERTNFREFMGRSNMKAFVFMAFL 293
E +A ++L+WLR K AD V+ EL+ I+K + ++ + + M RSN+K + L
Sbjct: 232 EERARKALQWLRGKKAD-VEPELKGIVKSHCEAERHASQNAIFDLMKRSNLKPLLIALGL 290
Query: 294 AVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLF 353
F+ +G+ ++I Y +IF + + + + +I+ ++ + F +T IDR GR++L
Sbjct: 291 MFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTIIVGVVNFGATFFATVLIDRLGRKILL 350
Query: 354 LVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSE 413
+S + G ++Y ++ W+P S + + F+ G GP+ +L E
Sbjct: 351 YISEVAMVITLLTLGTFFYYK-NSGNDVSNIGWLPLASFVIYVIGFSSGVGPIPWLMLGE 409
Query: 414 YFSSNMKAVSCAV---INILCTTL---------------------GLIS-----YKLFFL 444
++ + +V N CT + G+I + +FF+
Sbjct: 410 ILPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGVICLIGLFFVIFFV 469
Query: 445 MDKHIGKTFNEIQYMFKYGKNEYMASLYSQQPL 477
+ GK+ EI+ G+ M+S+ + +PL
Sbjct: 470 PETQ-GKSLEEIERKM-MGRVRRMSSVANMKPL 500
|
High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
| >sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 191/383 (49%), Gaps = 11/383 (2%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ + G A+++P L + ++ + ++P SWV I+ + I G + +
Sbjct: 416 LGSLVVGFVSAYTSPALVSMTNRNMTSFEVTPQAASWVGGIMPLAGLAGGIAGGPFIEYL 475
Query: 117 GRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
GR+ ++L T P +S +IA + +V + R L GF + + P+YLGE + +
Sbjct: 476 GRRNTILATAIPFIVSSLLIAC-AVNVAMVLAGRFLAGFCVGIASLSLPVYLGETVQPEV 534
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 235
RGT+G L ++GIL +V G+ + + +P+ F + +PE+P ++ +
Sbjct: 535 RGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMFLIPETPRWFVSRG 594
Query: 236 QEGKAIESLKWLRNKTADQVQSELQII---KQNTSKNVERTNFREFMGRSNMKAFVFMAF 292
+E KA ++L WLR K AD V+ EL+ + + + + + E + R+N+K
Sbjct: 595 REEKARKALSWLRGKEAD-VEPELKGLMRSQADADRQATQNKMMELLKRNNLKPLSISLG 653
Query: 293 LAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVL 352
L F+ +G+ ++I Y +IF + + + + +I+ I+ ++ F +T IDRAGR++L
Sbjct: 654 LMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKIL 713
Query: 353 FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLS 412
VS+ + F+ G ++Y Q ++ W+P + + F+LGFGP+ ++
Sbjct: 714 LYVSNIAMIITLFVLGGFFYCKSHGQ-DVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMG 772
Query: 413 EYFSSNMKAVSCAV---INILCT 432
E S ++ + +V N CT
Sbjct: 773 EILPSKIRGSAASVATAFNWSCT 795
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 191/383 (49%), Gaps = 11/383 (2%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ + G A+++P L + ++ + ++P SWV I+ + I G + +
Sbjct: 417 LGSLVVGFVSAYTSPALVSMTNRNMTSFEVTPQAASWVGGIMPLAGLAGGIAGGPFIEYL 476
Query: 117 GRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
GR+ ++L T P +S +IA + +V + R L GF + + P+YLGE + +
Sbjct: 477 GRRNTILATAIPFIVSSLLIAC-AVNVAMVLAGRFLAGFCVGIASLSLPVYLGETVQPEV 535
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 235
RGT+G L ++GIL +V G+ + + +P+ F + +PE+P ++ +
Sbjct: 536 RGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMFLIPETPRWFVSRG 595
Query: 236 QEGKAIESLKWLRNKTADQVQSELQII---KQNTSKNVERTNFREFMGRSNMKAFVFMAF 292
+E KA ++L WLR K AD V+ EL+ + + + + + E + R+N+K
Sbjct: 596 REEKARKALSWLRGKEAD-VEPELKGLMRSQADADRQATQNKMMELLKRNNLKPLSISLG 654
Query: 293 LAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVL 352
L F+ +G+ ++I Y +IF + + + + +I+ I+ ++ F +T IDRAGR++L
Sbjct: 655 LMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKIL 714
Query: 353 FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLS 412
VS+ + F+ G ++Y Q ++ W+P + + F+LGFGP+ ++
Sbjct: 715 LYVSNIAMIITLFVLGGFFYCKSHGQ-DVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMG 773
Query: 413 EYFSSNMKAVSCAV---INILCT 432
E S ++ + +V N CT
Sbjct: 774 EILPSKIRGSAASVATAFNWSCT 796
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila persimilis (taxid: 7234) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| 328699079 | 480 | PREDICTED: facilitated trehalose transpo | 0.829 | 0.854 | 0.342 | 5e-67 | |
| 328715719 | 457 | PREDICTED: facilitated trehalose transpo | 0.813 | 0.879 | 0.344 | 8e-66 | |
| 170058646 | 420 | solute carrier family 2 [Culex quinquefa | 0.789 | 0.928 | 0.334 | 4e-62 | |
| 158285602 | 478 | AGAP007483-PA [Anopheles gambiae str. PE | 0.789 | 0.815 | 0.331 | 7e-62 | |
| 157131260 | 476 | sugar transporter [Aedes aegypti] gi|108 | 0.805 | 0.836 | 0.334 | 1e-61 | |
| 312379840 | 515 | hypothetical protein AND_08195 [Anophele | 0.868 | 0.833 | 0.321 | 2e-61 | |
| 157674461 | 494 | putative sugar transporter [Lutzomyia lo | 0.842 | 0.842 | 0.307 | 2e-60 | |
| 195454054 | 489 | GK14444 [Drosophila willistoni] gi|19417 | 0.848 | 0.856 | 0.314 | 3e-57 | |
| 157167972 | 455 | sugar transporter [Aedes aegypti] gi|108 | 0.803 | 0.872 | 0.343 | 6e-57 | |
| 170058648 | 474 | conserved hypothetical protein [Culex qu | 0.815 | 0.850 | 0.312 | 2e-55 |
| >gi|328699079|ref|XP_001946696.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 239/421 (56%), Gaps = 11/421 (2%)
Query: 56 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR 115
A ++ G S W +PVL +L + + + + SW++A++E+GN LSPIP G+LV+
Sbjct: 20 ASLSVMMAGTSLGWPSPVLAKLSNGGLTMAATNEQQSWMIAMLELGNLLSPIPFGVLVDV 79
Query: 116 IGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
+GRK LL+TGP+ SW++ M S ++ LY +R LQG + I ++P+Y+GEI+ SI
Sbjct: 80 VGRKPCLLLTGPLYIVSWLMVMCSDTIGVLYWVRLLQGACIGIITTVAPIYIGEIAGDSI 139
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 235
RG + T F + GILY Y +G +SY YSL++P F T +++PESPY+Y +++
Sbjct: 140 RGALSTFFNGMLNAGILYVYCVGPLVSYDALTYYSLLVPCAFLGTCLWIPESPYYYVLRD 199
Query: 236 QEGKAIESLKWLR-NKTADQVQSELQIIKQNTSKNV-ERTNFREFMG-RSNMKAFVFMAF 292
+ KA ES+ WL N D V EL IK ++ ++ + R+ G R + KAF+ +
Sbjct: 200 DDKKAHESVAWLHGNAEPDVVVRELMRIKAEARDDLQDKGSIRDLFGSRCSRKAFLIVQI 259
Query: 293 LAVFRAFTGVQSIIAYANTIFASSET--FLPSDYISILFAIILLVSIFPSTYYIDRAGRR 350
+A +G+ +++AYA++ FA ++T L D ++L +++ + F + Y +D+ GRR
Sbjct: 260 VAAADVLSGMTTVLAYASSTFAHADTDKTLSPDQFTMLLGVLIFCTTFVTGYLVDKLGRR 319
Query: 351 VLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPL 410
L L S GC F + GLYYY + +E +W+PF +I V +++G GPL L
Sbjct: 320 PLLLFSCFGCGAFELVTGLYYYKR-WVGFE-SLGAWIPFTAIGSFAVIYSIGLGPLLPTL 377
Query: 411 LSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGKTFNEIQYMFKYGKNEYMAS 470
E F SN++ ++ A+ ++ T + + K++ ++ G N F YG M+
Sbjct: 378 QGEMFPSNVRGLASAITSVTLTVISFVGLKMYQVITDQWGIHVN----YFIYGTGCLMSF 433
Query: 471 L 471
L
Sbjct: 434 L 434
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328715719|ref|XP_001943565.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 139/404 (34%), Positives = 221/404 (54%), Gaps = 2/404 (0%)
Query: 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIP 108
+F + ++ G+ W++P++EELL +SPIPM+ +E SW V++I+ G L +P
Sbjct: 9 QFLAATAGSLSIMNVGIILGWTSPIMEELLGPDSPIPMTVDETSWFVSVIDWGLILGSLP 68
Query: 109 AGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLG 168
G+L +R GRK SL + GP+ A+W+ +Y + GL +R QG A Y + P+Y G
Sbjct: 69 FGVLADRWGRKPSLQIIGPMALATWVALLYVDTFQGLLAVRFAQGLLAAGAYTVLPVYAG 128
Query: 169 EISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESP 228
EI+ IRG +GT+FQI ++GILY Y G L Y ++ P++F F +PESP
Sbjct: 129 EIAGPKIRGALGTMFQIMMYVGILYVYAAGMYLDYTRLTYAAMAGPVVFCALFATIPESP 188
Query: 229 YFYAIKNQEGKAIESLKWLR-NKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKA 286
+FY +KN+ A +L WLR + T V E+ + + K + +F E F ++KA
Sbjct: 189 HFYVMKNRLADAKRALVWLRGDDTGSSVDDEMDAVVECICKEMRNASFTELFTDWVSLKA 248
Query: 287 FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDR 346
+ + L+VFR GV ++I+YA+ FA + ++ +S++FA +L S PST DR
Sbjct: 249 LIIVQGLSVFRVMAGVTALISYASITFAEMHVAVDANKLSLVFACSVLFSALPSTVLADR 308
Query: 347 AGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPL 406
GRR L +VS A C F Y+YV Y++ W+ L++ L V LG G L
Sbjct: 309 VGRRPLMIVSCASCFAFDTAIFAYFYVDRCTTYDVTDYGWLCVLAVGGLSVAHTLGLGSL 368
Query: 407 FTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450
+ + E F SN ++++ AV I T ++ K++ ++ G
Sbjct: 369 LSTINCELFPSNTRSIANAVNTITLTVASFLALKIYPVLADDGG 412
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170058646|ref|XP_001865010.1| solute carrier family 2 [Culex quinquefasciatus] gi|167877686|gb|EDS41069.1| solute carrier family 2 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/401 (33%), Positives = 223/401 (55%), Gaps = 11/401 (2%)
Query: 58 IAAFTTGM-------SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAG 110
+AAFT + S+ W++P L LL+ +SP+P++P+E SW+V+I+ + + P+P
Sbjct: 18 LAAFTVTLLTLSVIASYGWTSPTLPILLAPDSPLPITPDESSWIVSILVLASIAGPVPTA 77
Query: 111 MLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEI 170
V++ GRK+++L W++ ++SV LYV R L G S Y P+YLGEI
Sbjct: 78 WSVDKFGRKYTMLFAALPAIIGWVLIGVAQSVEVLYVSRLLSGLSYGMAYSSMPLYLGEI 137
Query: 171 SETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYF 230
+ IRG+IGTL + GIL Y +G + + S+ P F + FM+MPESPYF
Sbjct: 138 ASDPIRGSIGTLLTVMAKAGILIEYSIGPFVDFRTLAWISIAFPSAFFLLFMWMPESPYF 197
Query: 231 YAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVE-RTNFREFMGRSNMKAFVF 289
K + A ESL+WLR + D+V EL ++K ++ + + RE + N ++
Sbjct: 198 LLAKEKNDSAKESLQWLRKR--DEVTDELAMMKAAVDRSKQNKGTLRELFTKGNRRSLTI 255
Query: 290 MAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGR 349
+ L + G Q++IAY+ IF ++ L + SI+ A+I LV+ S+ +DR GR
Sbjct: 256 VLGLGALQQLCGSQAVIAYSQQIFEEVQSGLEAHESSIIMAVIQLVTAALSSSVVDRVGR 315
Query: 350 RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 409
R L L+S+AGC++ +F+ GLY+++ + + SW+P + + L V + +G +
Sbjct: 316 RPLLLISTAGCAIGTFVVGLYFFLQ-QQGVAVQSVSWIPLVVMMLYIVSYTIGLATVPFA 374
Query: 410 LLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450
+L E F SN+KAV+ A+ + + +G KL+ ++ IG
Sbjct: 375 ILGELFPSNVKAVAAAMYTMFASAVGFGVAKLYQVISDEIG 415
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285602|ref|XP_308390.4| AGAP007483-PA [Anopheles gambiae str. PEST] gi|157020071|gb|EAA04375.4| AGAP007483-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 133/401 (33%), Positives = 223/401 (55%), Gaps = 11/401 (2%)
Query: 58 IAAFT-------TGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAG 110
+AAFT S+ W++P L LLS +SP+P++P+E SW+V+I+ + + P+
Sbjct: 18 LAAFTGTLLMLSVAASYGWTSPTLPLLLSDDSPLPITPDESSWIVSILVLTSIAGPVATA 77
Query: 111 MLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEI 170
L++ GRK +LL+ + WI+ SV LY+ R L G S Y P+YLGEI
Sbjct: 78 WLIDGFGRKVTLLIAVLPSIVGWILIGVGESVTVLYISRALSGISYGMAYSSMPLYLGEI 137
Query: 171 SETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYF 230
+ IRG+IGTL + GIL YV+G + Y S+ P F F+++PESPY+
Sbjct: 138 ASDRIRGSIGTLLTVMAKSGILLEYVIGPYVDYRTLAWISVAFPTTFFALFLWLPESPYY 197
Query: 231 YAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVE-RTNFREFMGRSNMKAFVF 289
K + +A ++L+WLR A VQ EL++++ ++ + R FR+ + R N ++ +
Sbjct: 198 LLAKQRNEQAEKNLRWLRR--ASDVQDELRMMQAAVERSQQNRGTFRDLLTRGNRRSLII 255
Query: 290 MAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGR 349
+ L + G Q++IAY+ IF + L + SI+ A+I LV+ S+ +DR GR
Sbjct: 256 ILGLGALQQLCGSQAVIAYSQQIFDQVNSGLKAHESSIIMAVIQLVTAALSSSIVDRVGR 315
Query: 350 RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 409
R L L+S+ GC++ +FI GLY+++ ++ + ++ W+P I + VF+ +G +
Sbjct: 316 RPLLLISTVGCAVGTFIVGLYFFL-LQQEVDVEGVGWIPLAVIMIYIVFYTVGLATVPFA 374
Query: 410 LLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450
+L E F +N+KAV+ A+ + ++G KL+ L+ G
Sbjct: 375 ILGEIFPTNVKAVAAAIYTMFAGSVGFGVSKLYQLISDEAG 415
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157131260|ref|XP_001655842.1| sugar transporter [Aedes aegypti] gi|108871590|gb|EAT35815.1| AAEL012044-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/409 (33%), Positives = 232/409 (56%), Gaps = 11/409 (2%)
Query: 50 FGSEAHACIAAFTTGM-------SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGN 102
FG ++ +AAF+ + S+ W++P L L +SP+P++ +EGSW+V+I+ + +
Sbjct: 10 FGKYSNQYLAAFSVTLLTLSVIASYGWTSPTLPILQGDDSPLPITSDEGSWIVSILVLAS 69
Query: 103 YLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162
PIP ++R GRK+++L +WI+ + SV LYV R L G S Y
Sbjct: 70 IAGPIPTAWSIDRFGRKYTMLFAAIPAIIAWILIGVAESVPVLYVSRFLSGISYGMSYSS 129
Query: 163 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFM 222
P+YLGEI+ IRG+IGTL + GIL Y +G + + SL P F + F+
Sbjct: 130 MPIYLGEIASDPIRGSIGTLLTVMAKAGILIEYSIGPFVGFRTLAWISLAFPTSFFLLFL 189
Query: 223 FMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVE-RTNFREFMGR 281
+MPESPY+ +N++ A +SL WLR + DQV EL ++K ++ + + FRE + R
Sbjct: 190 WMPESPYYLLSQNKDDSAKKSLSWLRKR--DQVTDELAMMKAAVERSKQNKGTFRELLTR 247
Query: 282 SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPST 341
N ++ + + L + G Q++IAY+ IF ++ L + SI+ A+I L++ S+
Sbjct: 248 GNARSLIIVLGLGALQQLCGSQAVIAYSQQIFEEVQSGLKAHESSIIMAVIQLITAACSS 307
Query: 342 YYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNL 401
+DR GRR L L+S+AGC++ +FI GLY+++ + E+ SW+P + + L + + +
Sbjct: 308 SIVDRVGRRPLLLISTAGCAVGTFIVGLYFFLQ-QQGVEVQSVSWIPLVVMMLYIIAYTI 366
Query: 402 GFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450
G + +L E F SN+KAV+ A+ ++ +T+G KL+ ++ +G
Sbjct: 367 GLATVPFAILGELFPSNVKAVAAAMYTMVASTVGFGVAKLYQVISDELG 415
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312379840|gb|EFR26000.1| hypothetical protein AND_08195 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/441 (32%), Positives = 237/441 (53%), Gaps = 12/441 (2%)
Query: 14 SCRRLGKFEGCKVRINSMIPPQTYSRIMVSGTY---TGRFGSEAHACIAAFTTGMSFAWS 70
SCR ++ K R + +YSRI SGT T + A + + S+ W+
Sbjct: 16 SCRYQIEWHAAKAR---TLGWDSYSRI--SGTDRAPTAAAAAAAARTLLMLSVAASYGWT 70
Query: 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITT 130
+P L LL+ +SP+P++P+E SWVV+I+ + + P+ + L+++ GRK +LL+ +
Sbjct: 71 SPTLPRLLADDSPLPLTPDESSWVVSILVLTSIAGPVLSAWLIDKFGRKLTLLLAVLPSI 130
Query: 131 ASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLG 190
WI+ SV L+V R L G S Y P+YLGEI+ IRG+IGTL + G
Sbjct: 131 VGWILIGVGESVAVLFVSRALSGISYGMAYSSMPLYLGEIASDRIRGSIGTLLTVMAKTG 190
Query: 191 ILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNK 250
IL Y +G + Y S+ P+ F F+++PESPY+ K Q +A ++L+WLR
Sbjct: 191 ILLEYAIGPYVGYTTLAWISIAFPVTFFALFLWLPESPYYLLGKQQTEQAEQNLRWLRR- 249
Query: 251 TADQVQSELQIIKQNTSKNVE-RTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYA 309
A V++EL +++ ++ R FR+ + R N ++ + + L + G Q++IAY+
Sbjct: 250 -ASDVRTELAMMQAAVERSKHNRGTFRDLLNRGNRRSLIIIMGLGALQQLCGSQAVIAYS 308
Query: 310 NTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGL 369
IF L + SI+ A+I LV+ S+ +DR GRR L L S+ GC++ +FI GL
Sbjct: 309 QQIFDQVNIGLKAHESSIIMAVIQLVTAALSSSIVDRVGRRPLLLFSTVGCAIGTFIVGL 368
Query: 370 YYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINI 429
Y+++ + + ++ W+P + I L V + +G + +L E F +N+KAV+ A+ +
Sbjct: 369 YFFLD-QQEVDLDGIGWIPLVVIMLYIVCYTIGLATVPFAILGEIFPANVKAVAAALYTM 427
Query: 430 LCTTLGLISYKLFFLMDKHIG 450
++G KL+ L+ G
Sbjct: 428 FAGSVGFGVSKLYQLISDEAG 448
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157674461|gb|ABV60326.1| putative sugar transporter [Lutzomyia longipalpis] | Back alignment and taxonomy information |
|---|
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/426 (30%), Positives = 235/426 (55%), Gaps = 10/426 (2%)
Query: 35 QTYSRIMVSGTYTGRFGSEAHACIAAFTTGMSFAWSAPVLEEL-LSKESPIPMSPNEG-- 91
+T IM G +F + IA+ G + W++PV ++ S ++ +P +P EG
Sbjct: 23 KTEKFIMEKGKSYRQFLAGVVVNIASLALGTTLGWTSPVFPKINYSNDTAVPDTPLEGLP 82
Query: 92 -----SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLY 146
SW+ ++ +G ++P AG L ++IGRKW+LL + SWI+ + + ++ +Y
Sbjct: 83 TADELSWIGSLAALGALIAPFIAGPLADKIGRKWTLLSSTGFFAISWILLVTTNNIPQMY 142
Query: 147 VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNY 206
V R QGF + + + MY+GEIS RG +G+ Q+ GILY Y +G +SY+
Sbjct: 143 VARLFQGFGVGFVMTVQTMYIGEISSDQFRGALGSFMQLFIVTGILYVYAMGPFVSYVQL 202
Query: 207 LTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNT 266
LI P+ F F FMPE+PY+Y K + A++SL++LR K+A+ VQ E I++
Sbjct: 203 QWICLIPPLAFAAGFFFMPETPYYYTGKGDKTNAVKSLQFLRGKSAEGVQEEALKIQEAV 262
Query: 267 SKNVE-RTNFREFMG-RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDY 324
+ ++ + ++ +G + N+KA + A L F+ +G+ ++ Y+ IFA + + L
Sbjct: 263 EEAMKNKGTIKDLVGNKGNLKALIICAGLISFQQLSGINVVLFYSQIIFAKTGSSLEPAI 322
Query: 325 ISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYT 384
+I+ I+ +++ + +DR GR+++ LVS AG ++ + GLY+++ + +P
Sbjct: 323 ATIIVGIVQVIASGLTPLVVDRLGRKIILLVSGAGMAVCHALLGLYFFLDYQKSDVVPSI 382
Query: 385 SWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 444
W+P LS+ + +GFGPL +L E F +N+K+++ +++ C LG + K F
Sbjct: 383 GWLPILSVIGFVSVYCIGFGPLPWAVLGEMFPANVKSIASSIVASTCWVLGFLVTKYFSA 442
Query: 445 MDKHIG 450
MD+ +G
Sbjct: 443 MDEALG 448
|
Source: Lutzomyia longipalpis Species: Lutzomyia longipalpis Genus: Lutzomyia Family: Psychodidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195454054|ref|XP_002074065.1| GK14444 [Drosophila willistoni] gi|194170150|gb|EDW85051.1| GK14444 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/429 (31%), Positives = 235/429 (54%), Gaps = 10/429 (2%)
Query: 27 RINSMIPPQTYSRIMV-SGTYTGR-FGSEAHACIAAFTTGMSFAWSAPVLEELLSKE--- 81
+NS + YSR M TGR F + A ++AF G W++P+ +L S++
Sbjct: 16 EVNSFQMSEGYSRKMTPEPVKTGRIFLAAVAANMSAFVVGTCLGWTSPIGPKLKSEDTSD 75
Query: 82 SPI--PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS 139
SP+ P++ E +W+ ++I IG ++P AG L +RIGRKW LL + ++I+ M +
Sbjct: 76 SPLSRPITAEEDAWISSLIAIGALVAPFAAGPLADRIGRKWVLLSSSLFFVLAFILNMVA 135
Query: 140 RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGS 199
V LY+ R +QGF + + + PMY+GEIS ++RG +G+L Q+ GILY Y +G
Sbjct: 136 SEVWILYLSRLIQGFGVGFVMTVQPMYVGEISTDNVRGAVGSLMQLFIVAGILYVYAIGP 195
Query: 200 ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSEL 259
++Y +++PIIF V F MPESPY++A K ++ A+ SL++LR +++ V E+
Sbjct: 196 FVTYQALQWCCIVVPIIFDVFFFLMPESPYYFAGKGRKTDALRSLQFLRGQSSQGVHDEM 255
Query: 260 QIIKQNTSKNV--ERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSE 317
I+ N + + T F N KA A L F+ +G+ ++ + +IFAS+
Sbjct: 256 ATIQANVEDAMANKGTMMDLFKNAGNRKALFICAGLISFQQLSGINVVLFNSQSIFASAN 315
Query: 318 TFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIEL 377
T L +I+ + + S + DR GR+++ L+S++ S+ G ++Y+ + +
Sbjct: 316 TGLDPAVATIIIGCVQVASSGLTPIVADRLGRKIMLLISASVMSIGLAALGAFFYMQLVV 375
Query: 378 QYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLI 437
Q +I W+P ++ + + + GFGPL +L E F +N+K+ + +V+ C TLG +
Sbjct: 376 Q-DISMVGWMPVPALIIYNIVYCTGFGPLPWAVLGEMFPANIKSAASSVVASTCWTLGFV 434
Query: 438 SYKLFFLMD 446
+ + +D
Sbjct: 435 VTRWYPALD 443
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157167972|ref|XP_001663028.1| sugar transporter [Aedes aegypti] gi|108870672|gb|EAT34897.1| AAEL012903-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 224/410 (54%), Gaps = 13/410 (3%)
Query: 46 YTGRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLS 105
Y + + A ++ T M+ AWS+P + +L +++SPIP++ +EGSWVVAI IG
Sbjct: 10 YRNEYLATLAATLSIMMTVMTNAWSSPAIVKLEAEDSPIPITEDEGSWVVAIQAIGGIFG 69
Query: 106 PIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPM 165
PI G+ V+RIGRKW+LL T WI+ SV LY R L G S Y +SP+
Sbjct: 70 PIITGVAVDRIGRKWTLLSAAIPTIIGWILIGLGDSVGYLYAARFLFGVSYGTTYSVSPI 129
Query: 166 YLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMP 225
YLGEI+ +IRG+ GT+ I +G L Y +G L Y S+I P +F ++FM+MP
Sbjct: 130 YLGEITSDAIRGSSGTMITILARIGFLLMYSIGPYLEYRTLAWVSMIGPALFVLSFMWMP 189
Query: 226 ESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK-NVERTNFREFMG---R 281
E+PY+ KN+ +A +SL W R T ++ E++ +K + K N ++T+ R
Sbjct: 190 ETPYYLIGKNKHKQAEKSLSWFRRTT--KISEEMEAMKSSVEKSNQDKTSLSVLFTPAYR 247
Query: 282 SNMKAFVFMAFLAVFR-AFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPS 340
+NM+ + F+ VF FTG+ +I+ YA TIF T L + +SI+ + LV++
Sbjct: 248 NNMR----IVFVLVFSMQFTGILAILGYAQTIFGKISTSLKPEEMSIVLGAVQLVAVIFP 303
Query: 341 TYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFN 400
+ +DR GRR L L+S+ G +L + +Y+ + + Y+ W+ F++I VF+
Sbjct: 304 AFLVDRMGRRPLLLLSAVGTTLSLLVCSIYFAIAGD-NYQ-GSLGWIAFIAILFYIVFYG 361
Query: 401 LGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450
LG + +L+E F N++A + A +I L K F + ++G
Sbjct: 362 LGLATVSFAVLTEIFPKNIRAYANATFSIASAILIFGIVKAFQVTLDNVG 411
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170058648|ref|XP_001865011.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167877687|gb|EDS41070.1| conserved hypothetical protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/426 (31%), Positives = 224/426 (52%), Gaps = 23/426 (5%)
Query: 41 MVSGTYTGRFGSEAHACIAAFTTGMSF-------AWSAPVLEELLSKESPIPMSPNEGSW 93
MV T G + + IAA T +S WS+P + L ++SP+P++ ++GSW
Sbjct: 1 MVVETKRGSWSQYRNEYIAALTATLSLVATVAAAGWSSPAIPALKREDSPVPITADQGSW 60
Query: 94 VVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQG 153
+V+I+ IG++ PI G++V+ GRK +LL++ WII + +V +Y+ R LQG
Sbjct: 61 IVSILSIGSFFGPIITGLVVDVHGRKLTLLLSVIPLLVGWIIIGLASNVPMIYLARFLQG 120
Query: 154 FSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLII 213
S +Y ++P+YLGEIS IRG+ G L + L L Y +G +++ SL
Sbjct: 121 ISYGTVYSVTPIYLGEISSNVIRGSTGVLVTVMAKLAFLLEYSIGPFVTFRALSWISLCF 180
Query: 214 PIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLR---------NKTADQVQSELQIIKQ 264
PI F TF++MPE+PY+ + + A+ SL+WLR NK Q++S ++ KQ
Sbjct: 181 PIAFLATFLWMPETPYYLLAQGNDKAAMNSLRWLRRLDDNSIELNKEFQQMKSLIEKQKQ 240
Query: 265 NTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDY 324
N +T+ +SN K V + L+ TG+ +I+ Y+ TIF+ + L +
Sbjct: 241 N------QTSMGALFAKSNRKCLVIILLLSCGMQLTGINAILGYSQTIFSKLDMDLKAAE 294
Query: 325 ISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYT 384
+SI+ A++ L+++ T+ +D+AGRR L +SS G S+ + ++ L Y +
Sbjct: 295 LSIIMAVVQLIAVIIPTFVVDKAGRRPLLFISSGG-SVLGLVTCSVFFTMDTLGYPVEEF 353
Query: 385 SWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 444
SWVPF+ + F +G + +L E F ++KA + AV ++ + + KLF +
Sbjct: 354 SWVPFVGTLFFIISFAVGLATVPFAILGEVFPKHIKANANAVFAMITSVVVFAVVKLFQV 413
Query: 445 MDKHIG 450
+ G
Sbjct: 414 ISDGAG 419
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| FB|FBgn0037387 | 491 | CG1213 [Drosophila melanogaste | 0.789 | 0.794 | 0.313 | 4.2e-56 | |
| FB|FBgn0034247 | 465 | CG6484 [Drosophila melanogaste | 0.827 | 0.879 | 0.282 | 1.8e-54 | |
| FB|FBgn0036316 | 539 | CG10960 [Drosophila melanogast | 0.791 | 0.725 | 0.284 | 2.6e-53 | |
| FB|FBgn0037386 | 502 | CG1208 [Drosophila melanogaste | 0.708 | 0.697 | 0.316 | 3.3e-49 | |
| FB|FBgn0028560 | 444 | sut4 "sugar transporter 4" [Dr | 0.781 | 0.869 | 0.296 | 1.8e-48 | |
| FB|FBgn0031522 | 466 | CG3285 [Drosophila melanogaste | 0.769 | 0.815 | 0.267 | 1e-43 | |
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.755 | 0.721 | 0.259 | 5.9e-41 | |
| FB|FBgn0053282 | 460 | CG33282 [Drosophila melanogast | 0.793 | 0.852 | 0.264 | 9.6e-41 | |
| UNIPROTKB|Q17NV8 | 806 | Tret1 "Facilitated trehalose t | 0.755 | 0.462 | 0.264 | 3.8e-40 | |
| UNIPROTKB|A9ZSY3 | 505 | Tret1 "Facilitated trehalose t | 0.748 | 0.732 | 0.257 | 3.7e-39 |
| FB|FBgn0037387 CG1213 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 125/399 (31%), Positives = 227/399 (56%)
Query: 47 TGR-FGSEAHACIAAFTTGMSFAWSAPVLEELLSKE---SPI--PMSPNEGSWVVAIIEI 100
+GR F + A ++AF G + W++P+ +L S++ SP+ P++ +E +W+ ++I +
Sbjct: 39 SGRIFMAAVAANLSAFVVGTTLGWTSPIGPKLKSEDTSDSPLSRPITSDEDAWISSLIAV 98
Query: 101 GNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIY 160
G ++P AG + +RIGRKW LL + ++ + M + V LY+ R +QGF + +
Sbjct: 99 GALVAPFVAGPMADRIGRKWVLLSSSLFFVLAFGLNMVASEVWILYMSRLIQGFGVGFVM 158
Query: 161 VISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVT 220
+ PMY+GEIS ++RG G+L Q+ GILY Y +G +SY +++P++F +
Sbjct: 159 TVQPMYVGEISTDNVRGATGSLMQLFIVGGILYVYAIGPYVSYQALQWCCIVVPVVFDLV 218
Query: 221 FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNV--ERTNFREF 278
F MPESPYF+A K ++ +A++SL++LR ++A+ V E+ I+ N + + + T F
Sbjct: 219 FYMMPESPYFFAGKGRKSEALKSLQFLRGQSAEGVHDEMAEIQANVEEAMASKGTVMDLF 278
Query: 279 MGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIF 338
N +A A L F+ +G+ ++ + +IFAS+ T L +I+ + + S
Sbjct: 279 KNAGNRRALFICAGLISFQQLSGINVVLFNSQSIFASANTGLDPAIATIIIGCVQVGSSA 338
Query: 339 PSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVF 398
+ DR GR+V+ L SS+ S+ G ++Y+ + ++ +I W+P ++ + +
Sbjct: 339 LTPLVADRLGRKVMLLTSSSVMSIGLAALGAFFYMQL-VKGDISSVVWMPVPALIIYNIV 397
Query: 399 FNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLI 437
+ GFGPL +L E F +N+K+V+ +V+ C TLG +
Sbjct: 398 YCTGFGPLPWAVLGEMFPANIKSVASSVVASTCWTLGFL 436
|
|
| FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 117/414 (28%), Positives = 221/414 (53%)
Query: 41 MVSGTYTGRFGSEAHACIAAFTTGMSFAWSAPVLEEL-LSKESPIPMSPNEGSWVVAIIE 99
M G+ ++ + A A G S WS+PV + ++ E P+S ++ WV +++
Sbjct: 1 MSKGSVLPQYIAGLSASFGALCMGASIGWSSPVENMITVNTEYGFPISSSQFGWVSSLLT 60
Query: 100 IGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAI 159
+G + IP G ++ IGR+ ++L P W++ +++++V LY R + G A
Sbjct: 61 LGATVICIPIGFAIDWIGRRPTMLALIPPYMVGWVLMLFAKNVTMLYFGRFILGMCGGAF 120
Query: 160 YVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTV 219
V +PMY EI+ T++RGTIG+ FQ+ G+LY Y++G+ L + I+P+IF +
Sbjct: 121 CVTAPMYCTEITATALRGTIGSFFQLLIVSGVLYGYLVGAFLPLLTINILCAILPVIFAI 180
Query: 220 TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVE--RTNFRE 277
FMPESP + A+K + A ++L+WLR K AD + EL+ I + + K ++ + N
Sbjct: 181 IHFFMPESPVYLAMKGRNDDAAKALQWLRGKDAD-IDDELKEILEESQKQIDMPQVNILS 239
Query: 278 FMGRSN-MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVS 336
+ R +K L VF+ +TG+ +++ Y+ +IF + + + +++ + + S
Sbjct: 240 SLRRPIVLKGLGIAVLLQVFQQWTGINAVLFYSASIFEDTGSDISGSDATLIIGVTQVTS 299
Query: 337 IFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLG 396
+ ID+AGRR+L L+S ++ + + G+Y+ + + W+P SI +
Sbjct: 300 TLVAVAIIDKAGRRILLLISGVLMAVSTALMGVYFQLKENDPASMDNFGWLPISSICIFI 359
Query: 397 VFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450
+FF++GFGP+ +++E FS ++K+V+ ++ + LF ++ IG
Sbjct: 360 IFFSIGFGPVPWLVMAELFSEDVKSVAGSIAGTSNWLSAFVVTLLFPILKSSIG 413
|
|
| FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 112/394 (28%), Positives = 205/394 (52%)
Query: 60 AFTTGMSFAWSAPVLEELLSKES--PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG 117
AF G W++P E++ + P+ ++ SWV + + +G IP G L+N IG
Sbjct: 94 AFAAGTVLGWTSPAETEIVDRGEGYDFPVDKDQFSWVGSAMTLGAACVCIPIGFLINMIG 153
Query: 118 RKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRG 177
RKW++L W + +++ +V LY R + G + A V +PMY GEI++ IRG
Sbjct: 154 RKWTMLFLVLPFILGWTMLIWAVNVSMLYASRFILGIAGGAFCVTAPMYTGEIAQKEIRG 213
Query: 178 TIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQE 237
T+G+ FQ+ +GIL+ Y +G+ + I+P+IF F FMPESP + K++
Sbjct: 214 TLGSFFQLMITIGILFVYAVGAGVKIFWLSIICGILPLIFGAIFFFMPESPTYLVSKDRS 273
Query: 238 GKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRS-NMKAFVFMAFLAVF 296
AI+S++WLR K D ++ + + + N + R KA L F
Sbjct: 274 ENAIKSIQWLRGKEYDYEPELAELRETDRETKANKVNVWAALNRPVTRKALAISMGLMFF 333
Query: 297 RAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVS 356
+ G+ ++I YA+ IF + T + +++ +IL I+ +V+ F ST +D+ GRR+L L S
Sbjct: 334 QQVCGINAVIFYASRIFLEANTGIEAEWATILIGIMQVVATFVSTLVVDKLGRRILLLAS 393
Query: 357 SAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS 416
++ + G+Y+++ + ++ W+P S+ L + F++G+GP+ ++ E F+
Sbjct: 394 GISMAISTTAIGVYFFLQKQDAAQVVSLGWLPVASLCLFIIMFSIGYGPVPWLMMGELFA 453
Query: 417 SNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450
+++K + ++ L + K F ++ +G
Sbjct: 454 TDIKGFAGSLAGTSNWLLAFVVTKTFVNLNDGLG 487
|
|
| FB|FBgn0037386 CG1208 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 115/363 (31%), Positives = 207/363 (57%)
Query: 79 SKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWS-LLMTGPITTASWIIAM 137
S E+ I ++ ++ + V +++ G +P+G + +RIGR+++ ++M P A WI
Sbjct: 93 SNENDIRLTDSQKTLVGSMLPFGALFGALPSGYIADRIGRRYTAMVMDIPFILA-WITLS 151
Query: 138 YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVL 197
++ SV LY+ R L G + + V++PMY+ EI+ETSIRG++GTLFQ+ +GIL+ YV+
Sbjct: 152 FANSVGWLYLGRFLIGIATGSFCVVAPMYISEIAETSIRGSLGTLFQLLLTIGILFIYVV 211
Query: 198 GSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN-QEGKAIESLKWLRNKTADQVQ 256
G+ +S+ LIIPI+ V +PE+P Y +KN + +A +LKWL +
Sbjct: 212 GALVSWKTLSLLCLIIPILLLVGLFIVPETPV-YLLKNGKRSEANRALKWLWGDYCN-TS 269
Query: 257 SELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS 315
+ +Q I+ + + + ++ F R++ V L VF+ F+G+ ++I + N IF S
Sbjct: 270 NAIQAIQNDLDQTGVDASVKDLFSNRASRNGMVISVLLMVFQQFSGINAVIFFMNEIFES 329
Query: 316 SETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTI 375
S T P+ +I+ ++ ++ S+ I++AGR++L + SS ++ + G Y TI
Sbjct: 330 SSTLNPN-VCTIVVGVVQVIMTLASSLLIEKAGRKILLIFSSTIMTVCLAMLGAYN--TI 386
Query: 376 ELQYEIPYT-SWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMK--AVSCAVI-NILC 431
++ + W+P L I L V F++G+GP+ ++ E F ++K AVS +V+ N +C
Sbjct: 387 NRHTDLSQSIGWLPLLCIVLFIVSFSVGYGPIPWMMMGELFMPDVKGIAVSLSVMMNWVC 446
Query: 432 TTL 434
+L
Sbjct: 447 VSL 449
|
|
| FB|FBgn0028560 sut4 "sugar transporter 4" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 118/398 (29%), Positives = 208/398 (52%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSW--VVAIIEIGNYLSPIPAGMLVNR 115
+ AF G WS PV E+ + + +P + W V +++ +G S IP G+L+ +
Sbjct: 15 LGAFCLGAVIGWSGPVENEVKNSNA-YNFTPRQTEWGLVGSLMTLGAAFSCIPVGVLIGK 73
Query: 116 IGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
IGRK ++L+ P W++ + + + L + R + GF A V PMY+ EI++
Sbjct: 74 IGRKTTMLILLPPFFIGWLLILLASHIAMLLLGRFVVGFCGGAFCVTCPMYVTEIAQVQY 133
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 235
RGT+G FQ+ GILY +V+G + + I+P+IF V +FMPESP F A K
Sbjct: 134 RGTMGCFFQLLIVFGILYAFVVGGFVKTFYFNIACAILPVIFFVLMIFMPESPIFLAQKG 193
Query: 236 QEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRS-NMKAFVFMAFLA 294
+ KA +SLK+LR K AD V EL+ + K E+ + + + R +K L
Sbjct: 194 KAEKAEKSLKFLRGKDAD-VSGELKEMSAEGQK--EKASVGKILCRRITLKGLFLSIGLM 250
Query: 295 VFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL 354
+F+ TG+ +II Y+ IF ++ + L +I+ I+ ++ S I++ GR++L L
Sbjct: 251 LFQQMTGINAIIFYSTFIFETAGSTLEPRISTIIVGIVQAIATIISILVIEKVGRKILLL 310
Query: 355 VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEY 414
VS+ + + I LY+ + ++ W+ +++ + + F+LGFGP+ +++E
Sbjct: 311 VSACMMGISTLIMALYFGMLMKSG-----VGWLALIAVCVFIIGFSLGFGPVPWLMMAEL 365
Query: 415 FSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGKT 452
F+ ++KA++ ++ I LF +++ IG T
Sbjct: 366 FAEDVKALAGSIAGTTNWCFAFIVTLLFPVLNDIIGAT 403
|
|
| FB|FBgn0031522 CG3285 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 106/396 (26%), Positives = 211/396 (53%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKESPI--PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR 115
IA F+ G+ W +PV+ +L + ESP+ P+ ++ SW+ +++ IG+ + + AG+L++R
Sbjct: 34 IATFSHGLGVGWMSPVMRDLQTDESPLDFPVLVSQVSWIGSLVGIGSVMGNLIAGLLMDR 93
Query: 116 IGRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETS 174
IGRK L P TT W + + +SV LY+ R + G + A YV+ P ++ EI++T+
Sbjct: 94 IGRKMVLFFIAIPYTTF-WCLIYFVQSVEFLYIGRLMAGITGGACYVVLPTFISEIADTN 152
Query: 175 IRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIK 234
+RG +G++ +S + G+L Y++ + + Y + + +P+ + + +PE+P+ K
Sbjct: 153 VRGRLGSIILLSVNTGVLAGYIVSTRVDYFTSPPFIIGLPVCYFICNFLIPETPHHLVRK 212
Query: 235 NQEGKAIESLKWLRNKTADQVQSELQ-------IIKQNTSKNVERTNFREFMGRSNMKAF 287
+ A S + +N + +++E + +IK+ T K + ++R+F+ R KA+
Sbjct: 213 GKFEAAKRSFMFYKNIRKNDIKAEDEFEEMKYLLIKEQTEK-AKSFDYRDFITRPAFKAY 271
Query: 288 VFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRA 347
A L + F+ + Y +FA+S T L +I+ ++ +V + +T D+
Sbjct: 272 ASAAVLLISNQFSASFCVTTYLADVFAASHTTLNLGMCTIIIGVLQIVGNYVTTLLCDKY 331
Query: 348 GRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGF-GPL 406
GRR+L L S+ G S+ G + + E ++ W+P + +S N+G G L
Sbjct: 332 GRRILMLTSTLGASVCLTAFGTFTFFA-EAA-DLSSVDWLPLVILSCFVFLCNIGLVGCL 389
Query: 407 FTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 442
F L+ E F + +++VS + ++ ++ ++ K+F
Sbjct: 390 FVVLV-ELFPAKIRSVSVSTFVVILSSTVFLTLKIF 424
|
|
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 99/382 (25%), Positives = 193/382 (50%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ + G S A+++P L + + + ++ GSWV I+ + + I G L+ +
Sbjct: 65 LGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLVGGILGGPLIEYL 124
Query: 117 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR 176
GRK ++L T SW++ + V + V R L GFS+ + P+YLGE + +R
Sbjct: 125 GRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVR 184
Query: 177 GTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQ 236
GT+G L ++GIL +V G+ + + +P+ F + +PE+P +Y + +
Sbjct: 185 GTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPETPRWYVSRGR 244
Query: 237 EGKAIESLKWLRNKTADQVQSELQ-IIK--QNTSKNVERTNFREFMGRSNMKAFVFMAFL 293
+ +A ++L+WLR K AD V EL+ IIK Q+ ++ ++ + + ++N+K + L
Sbjct: 245 DDRARKALQWLRGKKAD-VDPELKGIIKSHQDAERHASQSAMLDLLKKTNLKPLLISLGL 303
Query: 294 AVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLF 353
F+ +G+ ++I Y IF + + + + +I+ ++ ++ F +T IDR GR++L
Sbjct: 304 MFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATLLIDRLGRKMLL 363
Query: 354 LVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSE 413
+S + G ++YV ++ + W+P S + + F+LGFGP+ ++ E
Sbjct: 364 YISDIAMIITLMTLGGFFYVKNN-GGDVSHIGWLPLASFVIFVLGFSLGFGPIPWLMMGE 422
Query: 414 YFSSNMKAVSCAV---INILCT 432
++ + +V N CT
Sbjct: 423 ILPGKIRGSAASVATAFNWSCT 444
|
|
| FB|FBgn0053282 CG33282 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 108/408 (26%), Positives = 217/408 (53%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPN--EGSWVVAIIEIGNYLSPIPAGMLVNR 115
I F G+ W +P L ++ + +SP+ N + SW+ +++ + + + ML+ R
Sbjct: 26 IITFGHGVGVGWLSPTLTKIQTADSPLDFEVNLAQISWLGSMLGLDSLCGNLTIAMLIER 85
Query: 116 IGRKWSL-LMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETS 174
GRK+ L LM GP WI+ + +V LY R L GF+ A Y++ P+++ E+++++
Sbjct: 86 AGRKFCLYLMAGPYACI-WILIYCASNVYYLYAARFLCGFTGGAGYLVVPIFISEVADSN 144
Query: 175 IRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIK 234
IRG + ++ +S LGIL Y+L + L+Y ++I+P+ + + + +PE+ + K
Sbjct: 145 IRGALTSMVMLSVDLGILAGYILSTYLAYHVVPFLAIILPVAYFIANIMLPETAPYLLKK 204
Query: 235 NQEGKAIESLKWLRNKTA---DQVQS----ELQ--IIKQNTSKNVERTNFREFMGRSNMK 285
+Q A S ++ RN+ + +Q EL+ ++ Q T +N ++++ + +K
Sbjct: 205 SQLAAAENSFRYYRNQRSAICEQTSKVNFEELRTAVLSQQT-RNATPLSYKDLTTKPALK 263
Query: 286 AFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYID 345
F L++ F+GV S I Y + IF +S + + + +I+ ++ +V ++ ST +D
Sbjct: 264 GFAASIVLSLGYQFSGVFSFINYMSDIFKASGSVVDVNTATIIIGLVQIVGVYTSTILVD 323
Query: 346 RAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGP 405
GRRVL L+S+ G + G + Y+ ++ Y++ +W+P + + ++ N+G
Sbjct: 324 IVGRRVLMLISTMGVGIGCIAFGCFTYLA-KI-YDLSDFNWLPLVLMIIICYVANIGLIG 381
Query: 406 LFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGKTF 453
+F +L E F +++++ ++ I + L + KLF LM + G +F
Sbjct: 382 IFFLVLVELFPVKIRSLATSLSVIFLSLLVFGTLKLFPLMLHYWGISF 429
|
|
| UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 3.8e-40, P = 3.8e-40
Identities = 101/382 (26%), Positives = 191/382 (50%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ + G S A+++P L + + + ++ GSWV I+ + I G L+ +
Sbjct: 354 LGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLAGGILGGPLIEYL 413
Query: 117 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR 176
GRK ++L T SW++ + V + V R L GFS+ + P+YLGE + +R
Sbjct: 414 GRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVR 473
Query: 177 GTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQ 236
GT+G L ++GIL +V G + + +PI F + +PE+P +Y + +
Sbjct: 474 GTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRGR 533
Query: 237 EGKAIESLKWLRNKTADQVQSELQ-IIK--QNTSKNVERTNFREFMGRSNMKAFVFMAFL 293
+ +A ++L+WLR K AD V EL+ IIK Q+ ++ ++ + M ++N+K + L
Sbjct: 534 DDRARKALQWLRGKKAD-VDPELKGIIKSHQDAERHASQSAMLDLMKKANLKPLLISLGL 592
Query: 294 AVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLF 353
F+ +G+ ++I Y IF + + + + +I+ ++ ++ F +T IDR GR++L
Sbjct: 593 MFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATMLIDRLGRKMLL 652
Query: 354 LVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSE 413
+S + G ++YV Q ++ W+P + + + F+LGFGP+ ++ E
Sbjct: 653 YISDVAMIITLMTLGGFFYVKNSGQ-DVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGE 711
Query: 414 YFSSNMKAVSCAV---INILCT 432
++ + +V N CT
Sbjct: 712 ILPGKIRGSAASVATAFNWSCT 733
|
|
| UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 98/380 (25%), Positives = 190/380 (50%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG 117
+ + G S +++P + L+ + ++ E +WV ++ + + I G L+ +G
Sbjct: 60 VGSMNVGFSSGYTSPAV---LTMNITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLG 116
Query: 118 RKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRG 177
RK +++ T T W++ + +V+ ++ R + G + + + P+Y+GE + +RG
Sbjct: 117 RKKTIMGTAVPFTIGWMLIANAINVVMVFAGRVICGVCVGIVSLAFPVYIGETIQPEVRG 176
Query: 178 TIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQE 237
+G L + GIL +++GS L + N + IP+ F + + PE+P +Y K +
Sbjct: 177 ALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILTPETPRWYVSKARV 236
Query: 238 GKAIESLKWLRNKTADQVQSELQ--IIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAV 295
+A +SL+WLR K + ++ E++ I Q S F++ + + A + L +
Sbjct: 237 QEARKSLRWLRGKNVN-IEKEMRDLTISQTESDRTGGNAFKQLFSKRYLPAVMISLGLML 295
Query: 296 FRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLV 355
F+ TG+ ++I YA +IF S + + + SI+ ++ +S F +T IDR GR+VL +
Sbjct: 296 FQQLTGINAVIFYAASIFQMSGSSVDENLASIIIGVVNFISTFIATMLIDRLGRKVLLYI 355
Query: 356 SSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYF 415
SS G Y+Y+ + ++ W+P + + + F++GFGP+ +L E
Sbjct: 356 SSVAMITTLLALGAYFYLK-QNHIDVTAYGWLPLACLVIYVLGFSIGFGPIPWLMLGEIL 414
Query: 416 SSNMK--AVSCAV-INILCT 432
S ++ A S A N CT
Sbjct: 415 PSKIRGTAASLATGFNWTCT 434
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 494 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-40 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-28 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 1e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-12 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 3e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 3e-05 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-05 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 0.002 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 2e-40
Identities = 99/390 (25%), Positives = 177/390 (45%), Gaps = 26/390 (6%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG 117
I AF T + F L + + + +S +V+I +G + + AG L +R G
Sbjct: 19 IGAFLTLIKFFKRFGALTSIGACAASTVLS----GLIVSIFSVGCLIGSLFAGKLGDRFG 74
Query: 118 RKWSLLMTGPITTASWIIAMYS--RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
RK SLL+ + ++ ++ +S L V R + G + I V+ PMY+ EI+ +
Sbjct: 75 RKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKL 134
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTY-------SLIIPIIFTVTFMFMPESP 228
RG +G+L+Q+ GIL ++G L+ + + I+ + +F+PESP
Sbjct: 135 RGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESP 194
Query: 229 YFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTN--FREFMGRSNMKA 286
+ +K + +A L LR V E+Q K + ++VE + E ++
Sbjct: 195 RWLVLKGKLEEARAVLAKLRG--VSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQ 252
Query: 287 FVFMAF-LAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYID 345
+ M L +F+ TG+ +I Y+ TIF + S ++I+ ++ V F + + +D
Sbjct: 253 RLLMGVMLQIFQQLTGINAIFYYSPTIFETL-GLSDSLLVTIIVGVVNFVFTFIAIFLVD 311
Query: 346 RAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGP 405
R GRR L L+ +AG ++ + G V + + V + I L FF LG+GP
Sbjct: 312 RFGRRPLLLLGAAGMAICFLVLG----VALLGVAKSKGAGIVAIVFILLFIAFFALGWGP 367
Query: 406 LFTPLLSEYFSSNMKAVS---CAVINILCT 432
+ ++SE F ++ + N L
Sbjct: 368 VPWVIVSELFPLGVRPKAMAIATAANWLAN 397
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-28
Identities = 97/385 (25%), Positives = 170/385 (44%), Gaps = 34/385 (8%)
Query: 92 SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVM--- 148
VV+I +G ++ + AG L +R GRK SLL+ + I+ + L + ++
Sbjct: 74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVG 133
Query: 149 RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY-------VLGSEL 201
R L G + + PMYL EI+ ++RG + +L+Q++ GIL Y L + L
Sbjct: 134 RVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL 193
Query: 202 SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKT--ADQVQSEL 259
+ L LI + + F+PESP + K + +A +SL LR + ++ EL
Sbjct: 194 GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDEL 253
Query: 260 Q--IIKQNTSKNVERTNFREF--MGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS 315
+ IK++ K + ++ R + L F+ FTG+ +I+ Y+ TIF
Sbjct: 254 ELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF-E 312
Query: 316 SETFLPSD--YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYV 373
+ +SI+ + F + + +DR GRR L L+ +AG ++ F+ G
Sbjct: 313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG--ILG 370
Query: 374 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM--KAVSCAVI---- 427
+ + V + I L FF +G+GP+ ++SE F ++ K +S AV
Sbjct: 371 ASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL 430
Query: 428 -NILCTTL------GLISYKLFFLM 445
N + L + +F
Sbjct: 431 ANFIVGFLFPTMLESIGVGGVFIFF 455
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-15
Identities = 82/367 (22%), Positives = 146/367 (39%), Gaps = 54/367 (14%)
Query: 94 VVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLY------- 146
VA IG + G NR GR+ SL + + S + + +
Sbjct: 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGY 119
Query: 147 -----VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGIL------YTY 195
+ R + G + ++SPMY+ EI+ IRG + + Q + G L Y
Sbjct: 120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179
Query: 196 VLGSELSYMN-----YLTYSLIIP-IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRN 249
+ S++N Y+ S IP ++F + F+PE+P + + ++ +A L+ +
Sbjct: 180 ARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG 239
Query: 250 KTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAF-------LAVFRAFTGV 302
T LQ IK + + K +F L+VF+ F G+
Sbjct: 240 NT--LATQALQEIKHSLDHGRKTGG----------KLLMFGVGVIVIGVMLSVFQQFVGI 287
Query: 303 QSIIAYANTIFASSETFLPSDYI-SILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCS 361
++ YA IF + + +I+ +I L + +D+ GR+ L ++ + G +
Sbjct: 288 NVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMA 347
Query: 362 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM-- 419
+ F G +Y V LS+ F + +GP+ LLSE F + +
Sbjct: 348 IGMFSLGTAFYTQAP--------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 399
Query: 420 KAVSCAV 426
KA++ AV
Sbjct: 400 KALAIAV 406
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 3/169 (1%)
Query: 56 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR 115
+ F +G+ +P L L +S ++ +V+ +G L + AG L +R
Sbjct: 4 LFLGFFLSGLDRGLLSPALPLLAEDLG---LSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 116 IGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
GR+ LL+ + ++ ++ S+ L V R L G A+Y + + E
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFM 224
RG LF LG L +LG L+ + +I I + +
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 8e-12
Identities = 64/382 (16%), Positives = 126/382 (32%), Gaps = 38/382 (9%)
Query: 57 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+AAF G+ + P L L+++ + +SP E ++ +G L+ AG L +R
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAED--LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF 59
Query: 117 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR 176
GR+ LL+ + ++ +++ S+ L V+R LQG A++ + + + R
Sbjct: 60 GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 177 GTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQ 236
G L LG +LG L+ + + +I I + + +
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVL---AALLLPRPP 176
Query: 237 EGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVF 296
L + ++ +A L
Sbjct: 177 PESKRPKPAEEAPAPLVPAWKLL---------------------LRDPVLWLLLALLLFG 215
Query: 297 RAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVS 356
AF + + + + S + L ++ + DR GRR L++
Sbjct: 216 FAFFALLTYLPLYQEVLGLSALLAG--LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLA 273
Query: 357 SAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS 416
L + L +S +++ LLG L F L L+S+
Sbjct: 274 LLLLILAALGLALLSLTE---------SSLWLLVALLLLGFGAGLVFPALNA-LVSDLAP 323
Query: 417 SNMKAVSCAVINILCTTLGLIS 438
+ + + N + G +
Sbjct: 324 KEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 63/304 (20%), Positives = 128/304 (42%), Gaps = 27/304 (8%)
Query: 90 EGSWVVAIIE----IGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGL 145
E +W V + + +G L G L +R GRK LL++ +T S ++ +S +
Sbjct: 124 EDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF 183
Query: 146 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMN 205
V R L G + I+V + + E R +GTL Q+ LG VL ++Y
Sbjct: 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG----LVLLPLVAYFI 239
Query: 206 ----YLTYSLIIP-IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQ 260
+L ++ +P +F + F+PESP + + + +A++ L+ + ++ +E+
Sbjct: 240 PDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVL 299
Query: 261 II--KQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSET 318
+ +++ S + ++ +F + N++ + F T +Y +
Sbjct: 300 SLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT--TAF----SYYGLVLDLGNL 353
Query: 319 FLPSDYIS-ILFAIILLVSIFPSTYYIDRAGRR---VLFLVSSAGCSLFS-FIAGLYYYV 373
+ Y+ + ++ L + + IDR GRR L+ + L F+ Y++
Sbjct: 354 GG-NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFL 412
Query: 374 TIEL 377
L
Sbjct: 413 RTAL 416
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 1/169 (0%)
Query: 57 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+A +SF + + L + + +S E ++++ +G L + G+L +R+
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 117 GRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
GR+ LL+ G + ++ + S+ L V L GF + + E++
Sbjct: 239 GRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFM 224
RGT LF LG +L L +I + +
Sbjct: 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 5/141 (3%)
Query: 92 SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 151
++A +G + +G+L +R GRK LL+ I S + S ++ L + R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 152 QGFSMAAIYVISPMYLGEISETSIR----GTIGTLFQISCHLGILYTYVLGSELSY-MNY 206
QGF A V + +I R G + + LG VL L + +
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 207 LTYSLIIPIIFTVTFMFMPES 227
L +++ F + +PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 55/299 (18%), Positives = 110/299 (36%), Gaps = 25/299 (8%)
Query: 86 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK----WSLLMTGPITTASWIIAMYSRS 141
+ P + ++ + IG + G L +RIGR+ WS+L+ T + +
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLC----ALATN 104
Query: 142 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTL----FQISCHLGILYTYVL 197
V L ++R L G + + + E + RGT L + I +G L
Sbjct: 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164
Query: 198 GSELSYMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQ 256
+ + I P++ + F+PES + + + + + + + Q
Sbjct: 165 IPVFGWRSLFYVGGIAPLLLLLLLMRFLPES-IDFLVSKRPETVRRIVNAIAPQMQAEAQ 223
Query: 257 SEL--QIIKQNTSKNVERTNFREFMGRSNMKAFV--FMAFLAVFRAFTGVQSIIAYANTI 312
S L Q Q T ++V + F+ R + ++ FM + V+ + ++
Sbjct: 224 SALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFS 283
Query: 313 FASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYY 371
+ + T + I+ + DR G RV L+ G ++F+ + G
Sbjct: 284 LSLAATGGALFNFGGVIGSIIF------GWLADRLGPRVTALLLLLG-AVFAVLVGSTL 335
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 23/175 (13%)
Query: 77 LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA 136
L S E + + + + I+ +G + G L +++GRK LL+ + A
Sbjct: 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNG---FFA 246
Query: 137 MYSRSVLG---LYVMRTLQGFSMAAIYVISPMYLGEISETSIRG----------TIGTLF 183
+S V G R L GF + I Y E RG IG ++
Sbjct: 247 FFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY 306
Query: 184 QISCHLGIL----YTYVLGSELSYMNYLTYSLI--IPIIFTV-TFMFMPESPYFY 231
+ I+ +++ +GS + ++ + ++ P +F + FMPESP F+
Sbjct: 307 AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF 361
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| KOG0252|consensus | 538 | 100.0 | ||
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.98 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.98 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.98 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.98 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| KOG0255|consensus | 521 | 99.97 | ||
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| KOG1330|consensus | 493 | 99.97 | ||
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.96 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.96 | |
| KOG2532|consensus | 466 | 99.96 | ||
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| KOG2533|consensus | 495 | 99.95 | ||
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.95 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.93 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.93 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.93 | |
| KOG2615|consensus | 451 | 99.93 | ||
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.93 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.93 | |
| KOG2504|consensus | 509 | 99.93 | ||
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.92 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.92 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.92 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.92 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.91 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.91 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.91 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.9 | |
| KOG3764|consensus | 464 | 99.9 | ||
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.9 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.89 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.88 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.87 | |
| KOG4686|consensus | 459 | 99.86 | ||
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.85 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.83 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.83 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.81 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.8 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.8 | |
| KOG2563|consensus | 480 | 99.78 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.77 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.77 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.74 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.74 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.73 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.71 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.7 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.68 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.64 | |
| KOG2325|consensus | 488 | 99.63 | ||
| KOG3626|consensus | 735 | 99.63 | ||
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.61 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.55 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.54 | |
| KOG2816|consensus | 463 | 99.53 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.48 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.46 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.45 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.44 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.43 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.42 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.39 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.38 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.37 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.37 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.34 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.32 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.3 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.29 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.29 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.28 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.25 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.24 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.24 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.23 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.23 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.22 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.22 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.22 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.21 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.2 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.18 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.17 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.17 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.15 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.15 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.15 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.14 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.14 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.12 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.12 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.08 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.07 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.07 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.06 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.06 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.05 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.05 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.05 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.04 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.03 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.03 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.0 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.0 | |
| KOG0569|consensus | 485 | 98.99 | ||
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.99 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.98 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.98 | |
| KOG0253|consensus | 528 | 98.95 | ||
| KOG2504|consensus | 509 | 98.94 | ||
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.94 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.93 | |
| KOG3098|consensus | 461 | 98.93 | ||
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.92 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.91 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.91 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.9 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.89 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.89 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.88 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.87 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.87 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.87 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.87 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.86 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.86 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.84 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.84 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.84 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.83 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.83 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.83 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.82 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.82 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.8 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.78 | |
| KOG0637|consensus | 498 | 98.78 | ||
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.77 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.75 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.74 | |
| KOG4686|consensus | 459 | 98.74 | ||
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.71 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.7 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.7 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.7 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.7 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.7 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.69 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.69 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.69 | |
| KOG3810|consensus | 433 | 98.68 | ||
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.68 | |
| KOG3762|consensus | 618 | 98.65 | ||
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.65 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.64 | |
| KOG3762|consensus | 618 | 98.6 | ||
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.59 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.59 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.58 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.56 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.55 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.55 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.54 | |
| KOG3764|consensus | 464 | 98.53 | ||
| KOG4332|consensus | 454 | 98.53 | ||
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.51 | |
| KOG2615|consensus | 451 | 98.5 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.47 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.47 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.43 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.42 | |
| KOG3574|consensus | 510 | 98.41 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.37 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.37 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.35 | |
| KOG1330|consensus | 493 | 98.34 | ||
| KOG0252|consensus | 538 | 98.31 | ||
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.27 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.26 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.26 | |
| KOG2532|consensus | 466 | 98.23 | ||
| KOG0255|consensus | 521 | 98.13 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.1 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.09 | |
| KOG0254|consensus | 513 | 98.08 | ||
| KOG1237|consensus | 571 | 98.04 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.93 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.86 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.84 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.76 | |
| KOG2816|consensus | 463 | 97.76 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.71 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.6 | |
| KOG1479|consensus | 406 | 97.49 | ||
| KOG2533|consensus | 495 | 97.47 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.45 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.43 | |
| KOG2325|consensus | 488 | 97.42 | ||
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.24 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.23 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.98 | |
| KOG3098|consensus | 461 | 96.87 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 96.79 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.75 | |
| KOG2563|consensus | 480 | 96.45 | ||
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.42 | |
| KOG3097|consensus | 390 | 96.14 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 95.97 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.83 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.77 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.73 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.55 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.55 | |
| KOG0637|consensus | 498 | 95.1 | ||
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.09 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.28 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.04 | |
| KOG3880|consensus | 409 | 94.02 | ||
| KOG3880|consensus | 409 | 92.57 | ||
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 90.14 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 87.19 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 86.49 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 85.46 | |
| KOG3626|consensus | 735 | 85.43 | ||
| KOG1479|consensus | 406 | 81.92 | ||
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 81.89 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 81.37 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=339.47 Aligned_cols=414 Identities=24% Similarity=0.357 Sum_probs=348.9
Q ss_pred hhhHHHHHHHHHHHHHhhhcccchhhHHHhhhc--CCC---CCC--CCCCch----hHHHHHHHHhHhhhhhchHhhhhh
Q psy4871 47 TGRFGSEAHACIAAFTTGMSFAWSAPVLEELLS--KES---PIP--MSPNEG----SWVVAIIEIGNYLSPIPAGMLVNR 115 (494)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~--~s~~~~----g~~~s~~~~~~~i~~~~~g~l~dr 115 (494)
++...+...++++.|..||+.+.+++..+.+.+ +++ .++ .++++. +.+.+++.+|.++|+++.|.++||
T Consensus 7 ~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~ 86 (485)
T KOG0569|consen 7 RRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADR 86 (485)
T ss_pred HHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346667777777789999999988876554442 110 334 444433 677899999999999999999999
Q ss_pred hCchhHHHhhHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHH
Q psy4871 116 IGRKWSLLMTGPITTASWIIAMY---SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGIL 192 (494)
Q Consensus 116 ~Grr~~l~~~~~~~~i~~~~~~~---a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 192 (494)
+|||..++++.++..++.++..+ ++++..++++|++.|+..|......+.|+.|..|++.||....+.+.+..+|.+
T Consensus 87 ~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~l 166 (485)
T KOG0569|consen 87 FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGIL 166 (485)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHH
Confidence 99999999999888888777665 468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh------hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHh-hCChHHHHHHHHHHhcCChhhHHH--HHHHHH
Q psy4871 193 YTYVLGSE------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAI-KNQEGKAIESLKWLRNKTADQVQS--ELQIIK 263 (494)
Q Consensus 193 ~~~~~~~~------~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~ 263 (494)
++..++.. -.|++.+.+..+++++..+...++||||||+.. |++.++|+++++++++.++++.+. +.++.+
T Consensus 167 l~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~ 246 (485)
T KOG0569|consen 167 LGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIE 246 (485)
T ss_pred HHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 99777644 369999999999999999999999999999998 899999999999999854433222 222222
Q ss_pred Hcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhh
Q psy4871 264 QNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPST 341 (494)
Q Consensus 264 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g 341 (494)
++..++.++.++++ ++++..+++..+.+.+...+++++.+...+|...++.+.|++. .+.++....++..++.++++.
T Consensus 247 ~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~ 326 (485)
T KOG0569|consen 247 EEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSP 326 (485)
T ss_pred HhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222446778889 9999999999999999999999999999999999999999886 677888999999999999999
Q ss_pred hhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhh
Q psy4871 342 YYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKA 421 (494)
Q Consensus 342 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 421 (494)
+++||+|||++++.++.++.+..+++........... ....+..+...+++.++++.|.+|++|-+.+|++|++.|+
T Consensus 327 ~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~---~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~ 403 (485)
T KOG0569|consen 327 FLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG---SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARS 403 (485)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchH
Confidence 9999999999999999999999888877665541100 0112344677888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhh---------------------------hcCCCHHHHHHHHhcC
Q psy4871 422 VSCAVINILCTTLGLISYKLFFLMDK---------------------------HIGKTFNEIQYMFKYG 463 (494)
Q Consensus 422 ~~~g~~~~~~~~~~~i~~~i~~~l~~---------------------------~~~~~~~~~~~~~~~~ 463 (494)
.+.++..+.+++..++....++.+.+ ||||+.+|+.+++++.
T Consensus 404 aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 404 AAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999999999888 9999999999888766
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=335.23 Aligned_cols=385 Identities=15% Similarity=0.163 Sum_probs=304.4
Q ss_pred chhhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhh
Q psy4871 46 YTGRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMT 125 (494)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~ 125 (494)
.+.+|.++++++++.+..+++...++.++|.+.. +++++..+.+++.+++.++++++++++|+++||+|||++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~---~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~ 238 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEK---DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC 238 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 4668888889999999999999999999999986 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-----
Q psy4871 126 GPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----- 200 (494)
Q Consensus 126 ~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----- 200 (494)
.++.+++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++...++.+|.++++.++..
T Consensus 239 lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~ 318 (742)
T TIGR01299 239 LSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY 318 (742)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999888875422
Q ss_pred ------------hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhh---HHHH--HHHHH
Q psy4871 201 ------------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQ---VQSE--LQIIK 263 (494)
Q Consensus 201 ------------~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~---~~~~--~~~~~ 263 (494)
.+||+.+++.++++++.++..+++||||+|+..+++.+++.+.++++++.+... .... ....+
T Consensus 319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~ 398 (742)
T TIGR01299 319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK 398 (742)
T ss_pred cchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence 269999999999888888888899999999999999999999999998654221 1100 00000
Q ss_pred H---cc---c--cccc-----------------ccchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc--
Q psy4871 264 Q---NT---S--KNVE-----------------RTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-- 316 (494)
Q Consensus 264 ~---~~---~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 316 (494)
. .. + .... ..+++++.++.++++.+++...++...+ +++.+..|+|.+++..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~ 477 (742)
T TIGR01299 399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQA 477 (742)
T ss_pred HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 0 00 0 0000 0123444455677777777777665554 5788999999875431
Q ss_pred ----------------------------------------CCC-------------------------------------
Q psy4871 317 ----------------------------------------ETF------------------------------------- 319 (494)
Q Consensus 317 ----------------------------------------~~~------------------------------------- 319 (494)
|+.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 557 (742)
T TIGR01299 478 DDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFE 557 (742)
T ss_pred HHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcc
Confidence 000
Q ss_pred --------------------------------c-----chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHH
Q psy4871 320 --------------------------------L-----PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 362 (494)
Q Consensus 320 --------------------------------~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 362 (494)
. .......+.+++.+++.+++++++||+|||+++..+.++.++
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai 637 (742)
T TIGR01299 558 NTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCI 637 (742)
T ss_pred ccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 0 012234556688899999999999999999999999888888
Q ss_pred HHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4871 363 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 442 (494)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~ 442 (494)
+++++++.. +....++..++++++.+. ..+..+++++|++|++.|++++|+.++...+|++++|++.
T Consensus 638 ~~ll~~~~~------------s~~~ll~~~~l~g~~~~~-~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~ 704 (742)
T TIGR01299 638 SCFFLSFGN------------SESAMIALLCLFGGLSIA-AWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIF 704 (742)
T ss_pred HHHHHHHHc------------cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766531 223333334444444443 3455668999999999999999999999999999999999
Q ss_pred hchhh
Q psy4871 443 FLMDK 447 (494)
Q Consensus 443 ~~l~~ 447 (494)
+.+.+
T Consensus 705 g~L~~ 709 (742)
T TIGR01299 705 GSFVG 709 (742)
T ss_pred HHHHH
Confidence 98875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=320.28 Aligned_cols=419 Identities=25% Similarity=0.380 Sum_probs=346.0
Q ss_pred hhHHHHHHHHHHHHHhhhc--ccchhhHHHhhhcCCCCCCCCC----CchhHHHHHHHHhHhhhhhchHhhhhhhCchhH
Q psy4871 48 GRFGSEAHACIAAFTTGMS--FAWSAPVLEELLSKESPIPMSP----NEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWS 121 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~----~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 121 (494)
..........++.+..|++ .+..++....+........... .+.+|+.++..++..+++++.|+++|++|||+.
T Consensus 42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~ 121 (513)
T KOG0254|consen 42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT 121 (513)
T ss_pred ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4667777788888888887 6778888777763111111222 244899999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy4871 122 LLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 201 (494)
Q Consensus 122 l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 201 (494)
++++.+++.++.+++++++|+++++++|+++|+|.|....+.+.|++|..|++.||...+..+....+|.+++..++...
T Consensus 122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~ 201 (513)
T KOG0254|consen 122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT 201 (513)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887775
Q ss_pred -----hhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHccc-c---cccc
Q psy4871 202 -----SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTS-K---NVER 272 (494)
Q Consensus 202 -----~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~ 272 (494)
+||..+.+..+++++..+..+++||||+|+..+++.+++++.+.++++.++.+...+.++.+.... + ...+
T Consensus 202 ~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (513)
T KOG0254|consen 202 SKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGK 281 (513)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccccc
Confidence 799999999999999988889999999999999999999999999998545555555544441111 1 1112
Q ss_pred cchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhhcccCchhH
Q psy4871 273 TNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVL 352 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 352 (494)
..++++..+..+++..+.+.+..++++++.+...+|.+.+++..|...+......+.++..+++.+++.++.||+|||++
T Consensus 282 ~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l 361 (513)
T KOG0254|consen 282 ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKL 361 (513)
T ss_pred ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 23555444678888999999999999999999999999999999877544677778888999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHH
Q psy4871 353 FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCT 432 (494)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 432 (494)
++.+...+.++.++++.................+..+...+++...++.++.|++|.+.+|.+|.+.|+.+.++...+++
T Consensus 362 ll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~ 441 (513)
T KOG0254|consen 362 LLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNW 441 (513)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHH
Confidence 99999999999998887765541100011234567778888888899999999999999999999999999999999998
Q ss_pred HHHHHHHHhhhchhh-----------------------------hcCCCHHHHHHHHhcCccc
Q psy4871 433 TLGLISYKLFFLMDK-----------------------------HIGKTFNEIQYMFKYGKNE 466 (494)
Q Consensus 433 ~~~~i~~~i~~~l~~-----------------------------~~~~~~~~~~~~~~~~~~~ 466 (494)
+.+.+....+..+.+ |+|+++||+++.+.+....
T Consensus 442 ~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~~ 504 (513)
T KOG0254|consen 442 LWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIKP 504 (513)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCch
Confidence 888776655444433 8999999999988766443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=324.01 Aligned_cols=388 Identities=15% Similarity=0.138 Sum_probs=283.4
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCC--CCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhh
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKE--SPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMT 125 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~ 125 (494)
.++.++.++.++.+.++++.+..+.+.|.+..+. .+.+.+..+.+++.+.+.+++.++++++|+++||+|||+++.++
T Consensus 13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~ 92 (502)
T TIGR00887 13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3788888999999999999999999888776410 01234556779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh------HHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q psy4871 126 GPITTASWIIAMYSRS------VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGS 199 (494)
Q Consensus 126 ~~~~~i~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 199 (494)
.++..++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|+++.++.+....+|.++++.++.
T Consensus 93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988765 7899999999999999999999999999999999999999999999999888877653
Q ss_pred h---------------------------hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChH-HHHHHHHHHhcCC
Q psy4871 200 E---------------------------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEG-KAIESLKWLRNKT 251 (494)
Q Consensus 200 ~---------------------------~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~-~a~~~~~~~~~~~ 251 (494)
. .+||+.|.+.++++++..+..+++||||+|+..+++.+ ++.+.+.+..+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~ 252 (502)
T TIGR00887 173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVK 252 (502)
T ss_pred HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccc
Confidence 2 26999999999888888788889999999999988874 4666666665422
Q ss_pred hhhHHHHHHHHHHcccccccccchhh-hcCc---chHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCcc-hhH--
Q psy4871 252 ADQVQSELQIIKQNTSKNVERTNFRE-FMGR---SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLP-SDY-- 324 (494)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 324 (494)
.++..++.++.+++ ++..+.++++ ++++ +.++..+.....++.. ....+....|.|.++++.|++.. ...
T Consensus 253 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~p~i~~~~G~~~~~~~~~~ 329 (502)
T TIGR00887 253 IEAEPDEVEKASTA--VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLL-DIAFYGVNLNQKVILSAIGYSPPAATNNA 329 (502)
T ss_pred cccCcccccchhcc--ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHccccccHHHHHHHcCCCCccchhH
Confidence 11111111111111 0111235666 5422 2222222222222222 22244566678888888776532 110
Q ss_pred ----------HHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHH
Q psy4871 325 ----------ISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISL 394 (494)
Q Consensus 325 ----------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (494)
...+..++.+++.+++++++||+|||+++..+..+++++++++....... ..........+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~ 400 (502)
T TIGR00887 330 YEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL---------STHGFLAIYVL 400 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc---------chhHHHHHHHH
Confidence 22334456667889999999999999998888877777776665432111 11111222222
Q ss_pred HHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 395 LGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
+..+++.+..+..+.+.+|.+|++.|+++.|+.+.+++++++++|.+++.+.+
T Consensus 401 ~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~ 453 (502)
T TIGR00887 401 AQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ 453 (502)
T ss_pred HHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence 33334555667777889999999999999999999999999999999999887
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=312.36 Aligned_cols=383 Identities=22% Similarity=0.312 Sum_probs=290.7
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCC--------CCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCch
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPI--------PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK 119 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 119 (494)
.+..++++++++.+.++++.+.+++..|.+++ ++ +.++.+.+++.+++.++..++++++|+++||+|||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr 85 (479)
T PRK10077 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNT---VFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (479)
T ss_pred HHHHHHHHHHHHHHhcCcccceehHhHHHHHH---HhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 36677788888999999999999999888874 55 88889999999999999999999999999999999
Q ss_pred hHHHhhHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHH
Q psy4871 120 WSLLMTGPITTASWIIAMYS------------RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISC 187 (494)
Q Consensus 120 ~~l~~~~~~~~i~~~~~~~a------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 187 (494)
++++++.++++++.++++++ +.++.++++|+++|++.|...+...++++|++|+++|++++++.+.+.
T Consensus 86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 165 (479)
T PRK10077 86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI 165 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence 99999999999998888763 235678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh------------hhhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhH
Q psy4871 188 HLGILYTYVLGS------------ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQV 255 (494)
Q Consensus 188 ~~G~~~~~~~~~------------~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~ 255 (494)
.+|.+++++++. ..+||+.|++.+++.++..+..+++||+|+|+..+++.+++++..++..+.+. .
T Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~--~ 243 (479)
T PRK10077 166 IFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL--A 243 (479)
T ss_pred HHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh--H
Confidence 999998877653 24899999999888887777778899999999888888888777776654221 1
Q ss_pred HHHHHHHHHcccccccccchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHH
Q psy4871 256 QSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILL 334 (494)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 334 (494)
....++.++..+. ++...+.+.. .........+....+.+..+.+...+|.|.+.++.|.+. .........++..+
T Consensus 244 ~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~ 320 (479)
T PRK10077 244 TQALQEIKHSLDH--GRKTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINL 320 (479)
T ss_pred HHHHHHHHHHHHH--hhhhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 1111111111100 0000011000 011112222233344445555667778898888877664 35566667888899
Q ss_pred HhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhccc
Q psy4871 335 VSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEY 414 (494)
Q Consensus 335 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (494)
++.++++++.||+|||+++..+.++.+++.+++....... .........+++++.+++..+.|..+.+++|.
T Consensus 321 i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 392 (479)
T PRK10077 321 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEI 392 (479)
T ss_pred HHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHHhccccchhHHHhHhh
Confidence 9999999999999999999999998888877765432111 12223344455555566555667777999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 415 FSSNMKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 415 ~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
+|++.|+++.|+.+..++++.++++.+++.+.
T Consensus 393 ~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 393 FPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999988777554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=293.25 Aligned_cols=398 Identities=25% Similarity=0.363 Sum_probs=294.8
Q ss_pred hhhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCC--------CCchhHHHHHHHHhHhhhhhchHhhhhhhCc
Q psy4871 47 TGRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMS--------PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGR 118 (494)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr 118 (494)
++.+...+++.++.+..+++.....+.++.+.. +++.+ ..+.+++.+++.++..++++++|+++||+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr 100 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAF---EFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGR 100 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHH---HHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence 445666666777778888888888888887774 55555 8999999999999999999999999999999
Q ss_pred hhHHHhhHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHH
Q psy4871 119 KWSLLMTGPITTASWIIAMYSR---SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY 195 (494)
Q Consensus 119 r~~l~~~~~~~~i~~~~~~~a~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~ 195 (494)
|++++++.++++++.+++.++. +++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|.++++
T Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 180 (481)
T TIGR00879 101 KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999986654 4558999999999999999999999999999999999999999999999999999
Q ss_pred Hhh---hh----hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHH--HHHHHHH--H
Q psy4871 196 VLG---SE----LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQ--SELQIIK--Q 264 (494)
Q Consensus 196 ~~~---~~----~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~--~ 264 (494)
.++ .. .+||+.|++.++..++..+..+++||+|+++..+++.+++.+..++..+.++.+.. ++..... .
T Consensus 181 ~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
T TIGR00879 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKR 260 (481)
T ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 998 33 58999999987777777777788999999888777777766665554432221111 1000000 0
Q ss_pred cccccccccchhh-hcCc-chHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhh
Q psy4871 265 NTSKNVERTNFRE-FMGR-SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPST 341 (494)
Q Consensus 265 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g 341 (494)
..+.+..+..+.+ ++.. ...++.++...+..+...........|.|.+.++.|++. .......+..++.+++.++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 340 (481)
T TIGR00879 261 SIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAI 340 (481)
T ss_pred HHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111122333 2211 123445555555555555555667788888888887765 455677778888999999999
Q ss_pred hhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhh
Q psy4871 342 YYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKA 421 (494)
Q Consensus 342 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 421 (494)
++.||++||+.+..+..+.+++.+++....... ....+ ....+..+....++..+++.+..+..+.++.|.+|++.|+
T Consensus 341 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 418 (481)
T TIGR00879 341 FLVDRFGRRPLLLIGAAGMAICLFVLGILGASF-VTGSS-KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP 418 (481)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcc-cCCcc-cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH
Confidence 999999999999888877777766665332111 00000 0013333444555556666667777778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhc
Q psy4871 422 VSCAVINILCTTLGLISYKLFFLMDKHI 449 (494)
Q Consensus 422 ~~~g~~~~~~~~~~~i~~~i~~~l~~~~ 449 (494)
++.|+.+...+++++++|.+.+.+.+..
T Consensus 419 ~~~~~~~~~~~lg~~i~~~~~~~~~~~~ 446 (481)
T TIGR00879 419 KGISIAVAANWLANFIVGFLFPTMLESI 446 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988743
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=296.05 Aligned_cols=350 Identities=16% Similarity=0.181 Sum_probs=266.8
Q ss_pred hHHHhhhcCCCCCCCC---CCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHH
Q psy4871 72 PVLEELLSKESPIPMS---PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVM 148 (494)
Q Consensus 72 ~~~~~~~~~~~~~~~s---~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~ 148 (494)
+..+.+.+ |++++ +.+.+++.+++.+|..+++++.|+++||+|||++++++.++.+++.++++++++++.+++.
T Consensus 110 ~~~~~i~~---e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (505)
T TIGR00898 110 TFSSTIVT---EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186 (505)
T ss_pred cccccEEE---EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 45677775 99998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhhccCcc
Q psy4871 149 RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-SYMNYLTYSLIIPIIFTVTFMFMPES 227 (494)
Q Consensus 149 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-~w~~~f~~~~~~~~~~~~~~~~~~es 227 (494)
|++.|++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+ +||+.|++.+++.++..+..+++||+
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999988664 79999999999888887777889999
Q ss_pred hhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHH--HHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHh
Q psy4871 228 PYFYAIKNQEGKAIESLKWLRNKTADQVQSELQII--KQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQS 304 (494)
Q Consensus 228 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (494)
|+|+..+++.+++.+.+++..+.+......+..+. +++.+++.++.++++ ++++..+...+.....++.. .
T Consensus 267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~ 340 (505)
T TIGR00898 267 PRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT------A 340 (505)
T ss_pred hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHH------H
Confidence 99999999999998888777653322211111111 111111112346667 76666555444433333321 1
Q ss_pred HHHh-HHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCc
Q psy4871 305 IIAY-ANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPY 383 (494)
Q Consensus 305 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (494)
..+| .+......+ .+......+.++..+++.++.+++.||+|||+.+..+.++.+++++++.+.. ..
T Consensus 341 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~----------~~ 408 (505)
T TIGR00898 341 FSYYGLVLDLGNLG--GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP----------VD 408 (505)
T ss_pred HHHHHHhccccccC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC----------CC
Confidence 1122 122222222 2445556677888889999999999999999999988888888776655431 11
Q ss_pred cchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy4871 384 TSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF 443 (494)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~ 443 (494)
..+......++.+++.+. ..+..+.+.+|.+|++.|+++.|+.++...+|++++|.+.+
T Consensus 409 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 409 LYFLRTALAVLGKFGITS-AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 123333333333333333 33456688999999999999999999999999999999988
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=337.67 Aligned_cols=396 Identities=25% Similarity=0.414 Sum_probs=309.6
Q ss_pred HHHHHHHhhhcccchhhHHHhhhcCCCCCCCC---------CCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhH
Q psy4871 56 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMS---------PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG 126 (494)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~ 126 (494)
+.++.+..|++.+..+...+.... ...+..+ ..+.+++.+...+|..+|+++.|+++||+|||++++++.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~ 83 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGF-LQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA 83 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhh-hhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 455668888888887766544441 0012222 224689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh---hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh---
Q psy4871 127 PITTASWIIAMYSR---SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE--- 200 (494)
Q Consensus 127 ~~~~i~~~~~~~a~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--- 200 (494)
++..+++++.++++ +++.++++|++.|++.|...+....++.|..|+++|++..++.+.++.+|.+++..++..
T Consensus 84 ~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~ 163 (451)
T PF00083_consen 84 LLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY 163 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999 999999999999999999999999999999999999999999999999999888877654
Q ss_pred -hh---hHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccc-cccccch
Q psy4871 201 -LS---YMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK-NVERTNF 275 (494)
Q Consensus 201 -~~---w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 275 (494)
.+ ||+.+.+..+++++..+..+++||||+|+..|+|.+||++.++++++. +..+++.++..++.++ ++.+.++
T Consensus 164 ~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 241 (451)
T PF00083_consen 164 YSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGK--EIEDEEIEEIKAEKKESQESKASW 241 (451)
T ss_pred ccccccccccccccccccccccccccccccccceeccccccccccccccccccc--ccccccccccccccccccccceee
Confidence 24 999999999999888888899999999999999999999999997653 2222222222222222 2222556
Q ss_pred hh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHH
Q psy4871 276 RE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL 354 (494)
Q Consensus 276 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 354 (494)
++ ++++..+++....+.+..+.++.+.+....|.+.+++..+.+.+ .....+..+..+++.+++.+++||+|||+++.
T Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i 320 (451)
T PF00083_consen 242 RDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLI 320 (451)
T ss_pred eeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 77 66655566777777777777777777888888888887765544 44555667778888888999999999999999
Q ss_pred HhhHHHHHHHHHHH--HHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHH
Q psy4871 355 VSSAGCSLFSFIAG--LYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCT 432 (494)
Q Consensus 355 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 432 (494)
.+..+++++.+.++ ...... . ........+....++..+++.++.++.+.+.+|.+|++.|+++.|+....++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~ 395 (451)
T PF00083_consen 321 IGLLLMAICSLILGIIFFLGVS-S----SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGR 395 (451)
T ss_pred cccccccccccccccccccccc-c----ccccccccceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 99988888877765 111111 0 0011333444455555666777888888999999999999999999999999
Q ss_pred HHHHHHHHhhhchhh----------------------------hcCCCHHHHHHHH
Q psy4871 433 TLGLISYKLFFLMDK----------------------------HIGKTFNEIQYMF 460 (494)
Q Consensus 433 ~~~~i~~~i~~~l~~----------------------------~~~~~~~~~~~~~ 460 (494)
+++++++.+.+.+.+ |+|++++|+++.|
T Consensus 396 i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 396 IGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 999999988877776 8999999998754
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=284.43 Aligned_cols=359 Identities=16% Similarity=0.133 Sum_probs=252.4
Q ss_pred HHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCc-hhHH-----HHHHHHhHhhhhhchHhhhhhhCchhHHHh
Q psy4871 51 GSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNE-GSWV-----VAIIEIGNYLSPIPAGMLVNRIGRKWSLLM 124 (494)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~~-----~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~ 124 (494)
.+.+.+.++.++++++...++...|.+.+ +++.+.++ .+++ .++.++++.+++++.|+++||+|||+++.+
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 92 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALGK---VFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45667788999999999999999999885 77544433 2332 477889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhHHH--------HHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy4871 125 TGPITTASWIIAMYSRSVLG--------LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYV 196 (494)
Q Consensus 125 ~~~~~~i~~~~~~~a~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~ 196 (494)
+.++++++++++++++|++. ++++|+++|++.|+.++...+++.|++|+++||++.++...+..+|.++++.
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~ 172 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG 172 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 8999999999999999999999999999999999999999888888877764
Q ss_pred hhh------------hhhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHH
Q psy4871 197 LGS------------ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQ 264 (494)
Q Consensus 197 ~~~------------~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 264 (494)
+.. .++||+.|++.+++.++..++...+||+|+|...+++.++.. . +
T Consensus 173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------~-~---------- 231 (490)
T PRK10642 173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------R-E---------- 231 (490)
T ss_pred HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------c-c----------
Confidence 432 258999999988777765556678899998754322211100 0 0
Q ss_pred cccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhh
Q psy4871 265 NTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPST 341 (494)
Q Consensus 265 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g 341 (494)
. ..+.++.++++ +++ .++.........++ .....+.+..|.|.++++ .+.+. ..........++.+++.++.|
T Consensus 232 ~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 307 (490)
T PRK10642 232 G-LQDGPKVSFKEIATK--HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMG 307 (490)
T ss_pred c-ccccccCCHHHHHHH--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00011224455 432 22233322222222 223356677788998854 46553 344455566777889999999
Q ss_pred hhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhh
Q psy4871 342 YYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKA 421 (494)
Q Consensus 342 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 421 (494)
+++||+|||+.+..+.++..++.+.+.... . ..+....++..++.+++.+.... ....+.+|.+|++.|+
T Consensus 308 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg 377 (490)
T PRK10642 308 LLSDRFGRRPFVILGSVALFVLAIPAFILI--N-------SNVIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRY 377 (490)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHH--h-------CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccch
Confidence 999999999988777654443332211111 1 11222233333444444333333 3336778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 422 VSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 422 ~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
++.|+.+....+++.++|.+.+++.+
T Consensus 378 ~~~g~~~~~~~~~g~~~p~i~g~l~~ 403 (490)
T PRK10642 378 SALAAAFNISVLVAGLTPTLAAWLVE 403 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998777788888899999998776
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=280.91 Aligned_cols=375 Identities=13% Similarity=0.074 Sum_probs=263.4
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
.+|.....++++.+++.++....+...|.+++ |+++++++.|++.+++.+++.+++++.|+++||+|||+++..+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 81 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGK---DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV 81 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHh---hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence 36777888888888889999999999999985 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-------
Q psy4871 128 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE------- 200 (494)
Q Consensus 128 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~------- 200 (494)
+++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|.++++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888754
Q ss_pred ---hhhHHHHHHHHHHHHHHHH-HhhccCcchh---HHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHccccccccc
Q psy4871 201 ---LSYMNYLTYSLIIPIIFTV-TFMFMPESPY---FYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERT 273 (494)
Q Consensus 201 ---~~w~~~f~~~~~~~~~~~~-~~~~~~esp~---~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (494)
.+||+.|++.+++.++..+ ..+++||+|+ |+.. ++.+...+..+. +..+.++..... ..++...+.
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~ 234 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDN-DQLTLEQPEGAF--AHAAMPQRS 234 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHh-cccccccccccc--ccccccHHH
Confidence 3899999998888776654 4467899884 2211 111111111110 000000000000 000000011
Q ss_pred chhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc--CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCch
Q psy4871 274 NFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS--ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRR 350 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 350 (494)
.++++.++. ++......++.....+.+..|.|.++++. +.+. ..+.......++.+++.++.++++||+++|
T Consensus 235 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r 309 (412)
T TIGR02332 235 MLREIFTPA-----IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER 309 (412)
T ss_pred HHHHhcChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence 223322222 22333333334444667888999999874 3332 456667788899999999999999999977
Q ss_pred hH-HHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHH
Q psy4871 351 VL-FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINI 429 (494)
Q Consensus 351 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 429 (494)
+. ......+..++. ++... .......+..+.+...+... ..+..+....|.+|++.|+++.|+.+.
T Consensus 310 ~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~a~g~~~~ 376 (412)
T TIGR02332 310 KHHTALPYLFAAAGW-LLASA-----------TDHNLIQLLGIIMASMGSFS-AMAIFWTTPDQSISLQARAIAIAVINA 376 (412)
T ss_pred HHHHHHHHHHHHHHH-HHHHh-----------cCCHHHHHHHHHHHHHHhhh-hhhHHHhhcccccchHHHHHHHHHHHH
Confidence 64 333333333332 22111 11112222222222222211 123333555788999999999999999
Q ss_pred HHHHHHHHHHHhhhchhhhcC
Q psy4871 430 LCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 430 ~~~~~~~i~~~i~~~l~~~~~ 450 (494)
..++|++++|.+.|.+.+..|
T Consensus 377 ~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 377 TGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred hhhhhhhhhhhhcccccccCC
Confidence 999999999999999987544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=276.68 Aligned_cols=377 Identities=14% Similarity=0.163 Sum_probs=269.4
Q ss_pred hhhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhH
Q psy4871 47 TGRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG 126 (494)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~ 126 (494)
+++|.....+.++.+.++++....+++.|.+.+ ++++++.+.+++.+++.++..+++++.|.++||+|||++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAG---EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 457888888999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hh
Q psy4871 127 PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LS 202 (494)
Q Consensus 127 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~ 202 (494)
++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.. .+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888765 24
Q ss_pred --hHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhhhcC
Q psy4871 203 --YMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMG 280 (494)
Q Consensus 203 --w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (494)
||+.|++.+++.++..+....+||++++...+++.++..+..++..+ ++....... +......++ +.
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~~~-~~ 233 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYG-GEHRIANIV---------MTLAAAMVQ-SA 233 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc-cchhhhhhh---------hhhhHHhhh-hh
Confidence 99999988777766666667789987654332222211111111111 000000000 000000111 00
Q ss_pred cchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhH
Q psy4871 281 RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSA 358 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 358 (494)
+..+...........+.... ......+.|.++.+ .|.+. +.+.......++.+++.++.+++.||++||+.+..+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~ 312 (405)
T TIGR00891 234 GKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLL 312 (405)
T ss_pred hhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHH
Confidence 11111111112222221111 23344566766654 45554 45566777888999999999999999999998877766
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHH
Q psy4871 359 GCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLIS 438 (494)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~ 438 (494)
...+....+... ..+.+...+..++.+.+.. +..+....++.|.+|++.|+++.|+.+....++..++
T Consensus 313 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g 380 (405)
T TIGR00891 313 AGQLLIIPVFAI-----------GANVAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALA 380 (405)
T ss_pred HHHHHHHHHHHh-----------CCchHHHHHHHHHHHHHHc-cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHH
Confidence 553332222111 1222333333333333333 3334555788999999999999999999999999999
Q ss_pred HHhhhchhhhcC
Q psy4871 439 YKLFFLMDKHIG 450 (494)
Q Consensus 439 ~~i~~~l~~~~~ 450 (494)
|.+.|.+.+..|
T Consensus 381 ~~~~g~l~~~~g 392 (405)
T TIGR00891 381 PIIGALLAQRLD 392 (405)
T ss_pred HHHHHHHHHhcc
Confidence 999999988655
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=257.10 Aligned_cols=345 Identities=14% Similarity=0.162 Sum_probs=267.5
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
.+..++.+.++.|..+........++|++.+ |+++|..+.|++.|+|.+++.+++++...+.||+.||++++....+
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~---dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l 87 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 6677888888999999999999999999996 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhh----hhhhH
Q psy4871 129 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGS----ELSYM 204 (494)
Q Consensus 129 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~----~~~w~ 204 (494)
+.++++++++++||+.++++|++.|++.|..++...++..+..|+++|++++++...+..++.++|..++. .+|||
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR 167 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWR 167 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999888887777666554 47999
Q ss_pred HHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcc
Q psy4871 205 NYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRS 282 (494)
Q Consensus 205 ~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 282 (494)
+.|++.+.++++..+.. ..+| |+. .++.. ..+..+..+ ++++.
T Consensus 168 ~~F~~ia~l~ll~~~~~~~~lP--~~~--------------------~~~~~-------------~~~~~~~~~~l~~p~ 212 (394)
T COG2814 168 ATFLAIAVLALLALLLLWKLLP--PSE--------------------ISGSL-------------PGPLRTLLRLLRRPG 212 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--Ccc--------------------CCCCC-------------CcchhHHHHHhcCch
Confidence 99999999998887655 6677 210 00000 000001122 44444
Q ss_pred hHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHH
Q psy4871 283 NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGC 360 (494)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 360 (494)
.+. .....+..+.+.+...+|...++++ .|++. ...+....++++.++|..++|++.|| +.|+.+.....+.
T Consensus 213 v~~-----~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~ 286 (394)
T COG2814 213 VLL-----GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLL 286 (394)
T ss_pred HHH-----HHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHH
Confidence 432 2222233334566666677666655 56664 67788889999999999999999999 8888888887777
Q ss_pred HHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4871 361 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYK 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~ 440 (494)
.+..+.+.+. ..+.+......+++++.......... ...++ .-++.++.+.+++....++|..+|..
T Consensus 287 a~~~l~l~~~-----------~~~~~~~~~~~~~wg~a~~~~~~~~~-~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~ 353 (394)
T COG2814 287 ALALLALTFT-----------GASPALALALLFLWGFAFSPALQGLQ-TRLAR-LAPDAADLAGSLNVAAFNLGIALGAA 353 (394)
T ss_pred HHHHHHHHHh-----------cchHHHHHHHHHHHHHHhhhhhhHHH-HHhcc-cCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 7777766554 23344444444454444433222222 34445 33467899999999999999999999
Q ss_pred hhhchhhhcC
Q psy4871 441 LFFLMDKHIG 450 (494)
Q Consensus 441 i~~~l~~~~~ 450 (494)
+.|.+.|..|
T Consensus 354 lGG~v~~~~g 363 (394)
T COG2814 354 LGGLVLDALG 363 (394)
T ss_pred HHHHHHHhhc
Confidence 9999998533
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=274.38 Aligned_cols=352 Identities=14% Similarity=0.135 Sum_probs=268.5
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
++|.+++++++..+.++++....++..|.+.+ +++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQ---EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 58889999999999999999999999999995 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhh
Q psy4871 128 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSY 203 (494)
Q Consensus 128 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w 203 (494)
+.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.++.. .+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 168 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW 168 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888754 589
Q ss_pred HHHHHHHHHHHHHHHH-HhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCc
Q psy4871 204 MNYLTYSLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGR 281 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 281 (494)
|+.|++.+++.++..+ ...++||+|++...+.+.++.+. ..+. ++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~ 217 (406)
T PRK11551 169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP-------------------------------VLRALFGEG 217 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh-------------------------------hHHHHhhhh
Confidence 9999988776655554 34667988754322111000000 0000 1110
Q ss_pred chHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHH
Q psy4871 282 SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGC 360 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 360 (494)
..+ +.. ......+......+....|.|.++++.|.+. ..+.......++.+++.++.|++.||++||+.+..+....
T Consensus 218 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 295 (406)
T PRK11551 218 RAT-ATL-LLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGI 295 (406)
T ss_pred hhh-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 000 111 1111111112224456678888888877664 5667777788899999999999999999999887766655
Q ss_pred HHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4871 361 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYK 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~ 440 (494)
+++.+.+... .+.+...+..++.+++.. +..+..+++..|.+|++.|+++.|+.+....++.+++|.
T Consensus 296 ~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~ 362 (406)
T PRK11551 296 LASLAALAAA------------PSFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPL 362 (406)
T ss_pred HHHHHHHHhc------------CcHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhh
Confidence 5554443321 223333333344444333 234556688899999999999999999999999999999
Q ss_pred hhhchhhh
Q psy4871 441 LFFLMDKH 448 (494)
Q Consensus 441 i~~~l~~~ 448 (494)
+.|.+.+.
T Consensus 363 ~~g~l~~~ 370 (406)
T PRK11551 363 LAGQLLAL 370 (406)
T ss_pred hHhhhhcc
Confidence 99999874
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=249.24 Aligned_cols=378 Identities=15% Similarity=0.153 Sum_probs=291.2
Q ss_pred chhhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhh
Q psy4871 46 YTGRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMT 125 (494)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~ 125 (494)
.+.+|...+....+...+.+..-..+-+.|.+.. .++.+..|..++......|..+++..+|.++|++|||+.+.+.
T Consensus 73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~---~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T 149 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDE---VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLT 149 (528)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhh
Confidence 4558888888888887777666666667787774 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----h
Q psy4871 126 GPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----L 201 (494)
Q Consensus 126 ~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~ 201 (494)
.+..++...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....+... +
T Consensus 150 ~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~ 227 (528)
T KOG0253|consen 150 FLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF 227 (528)
T ss_pred HHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 798999999999999998776666 7888888877766543 6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhH---------HHHHHH----HHHcccc
Q psy4871 202 SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQV---------QSELQI----IKQNTSK 268 (494)
Q Consensus 202 ~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~ 268 (494)
||||.......+..+.+.+.+++||||||+..++++++|...++++.+.|.... .++.++ ..+...+
T Consensus 228 gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~ 307 (528)
T KOG0253|consen 228 GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSS 307 (528)
T ss_pred hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhc
Confidence 999999999988888888889999999999999999999999999876544321 111111 1111111
Q ss_pred --cccccchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcC--------------------CCc-chhHH
Q psy4871 269 --NVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSE--------------------TFL-PSDYI 325 (494)
Q Consensus 269 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~ 325 (494)
++.+....++..+++++..+.....++...+. ++........+++... .+. ....-
T Consensus 308 a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd 386 (528)
T KOG0253|consen 308 AAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD 386 (528)
T ss_pred cccccccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence 23334455555667777777777766654443 2233323333332210 111 12234
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhccccc
Q psy4871 326 SILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGP 405 (494)
Q Consensus 326 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (494)
.++..+..++|.++.++++||+|||+.+..++++++++.+++.... .........+..-++.+.+++
T Consensus 387 llitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~------------~rn~~tvllf~arafisg~fq- 453 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK------------TRNAYTVLLFTARAFISGAFQ- 453 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc------------CcchhHHHHHHHHHHHhchhe-
Confidence 5678889999999999999999999999999999998887765532 222334444555555555554
Q ss_pred chhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4871 406 LFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 442 (494)
Q Consensus 406 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~ 442 (494)
+.|.|.+|++|+..|+++.|.++..+.+|+++.|.+.
T Consensus 454 vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 454 VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 6679999999999999999999999999999999887
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=272.00 Aligned_cols=363 Identities=16% Similarity=0.177 Sum_probs=263.0
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
++...+.+.++.+.++++.....+.+|.+.+ ++|+++.+.+++.+++.+++.+++++.|+++||+|||++++++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~ 92 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKA---DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 5555677788888889999889999999995 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhH
Q psy4871 129 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYM 204 (494)
Q Consensus 129 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~ 204 (494)
.++++++++++++++.++++|+++|++.+..++....++.|++|+++|+++.++...+..+|.++++.+... .+||
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~ 172 (426)
T PRK12307 93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR 172 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998877654 5899
Q ss_pred HHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcch
Q psy4871 205 NYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSN 283 (494)
Q Consensus 205 ~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 283 (494)
+.|++..+..++........||++++...+.+.+ ++.. ....+..+.++++ ++++..
T Consensus 173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------~~~~----------~~~~~~~~~~~~~~~~~~~~ 230 (426)
T PRK12307 173 AAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK------------GKHS----------QSAWSVFSLSMKGLFNRAQF 230 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc------------cccc----------ccchhhhhHHHHHHHhhchH
Confidence 9998865544443333344566654321110000 0000 0000001123444 444433
Q ss_pred HHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHH
Q psy4871 284 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 362 (494)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 362 (494)
+.. ....... +..+.....+..+.|.++++.|.+. ..+....+..++.+++.++.+++.||++||+.+..+.++..+
T Consensus 231 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~ 308 (426)
T PRK12307 231 PLT-LCVFIVL-FSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFL 308 (426)
T ss_pred HHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 322 2211111 2222223345667888888777654 445566677888999999999999999999988877766665
Q ss_pred HHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHh-hcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy4871 363 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFF-NLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 441 (494)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i 441 (494)
..+.+... ..... .....++++.++ ..+..+....++.|.+|++.|+++.|+.+....+++.++|.+
T Consensus 309 ~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~ 376 (426)
T PRK12307 309 FIFPLFRI-----------PQDNY-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMA 376 (426)
T ss_pred HHHHHHHH-----------ccccH-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHH
Confidence 54433322 11111 122223333322 222334444678899999999999999999999999999999
Q ss_pred hhchhhhcC
Q psy4871 442 FFLMDKHIG 450 (494)
Q Consensus 442 ~~~l~~~~~ 450 (494)
.|++.+..+
T Consensus 377 ~g~l~~~~g 385 (426)
T PRK12307 377 ATWLGITMG 385 (426)
T ss_pred HHHHHHccc
Confidence 999988444
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=268.33 Aligned_cols=347 Identities=12% Similarity=0.085 Sum_probs=236.8
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCC---CCCCchhHHH---HHHHHhHhhhhhchHhhhhhhCchhHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIP---MSPNEGSWVV---AIIEIGNYLSPIPAGMLVNRIGRKWSL 122 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~g~~~---s~~~~~~~i~~~~~g~l~dr~Grr~~l 122 (494)
++..+..++++.+++.++...++...|.+.+ +++ .+..+.+.+. +..+++..++++++|+++||+|||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l 96 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAH---IFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM 96 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5666777788889999999999888898885 764 4444444444 444555559999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHhhHH--------HHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHH
Q psy4871 123 LMTGPITTASWIIAMYSRSVL--------GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYT 194 (494)
Q Consensus 123 ~~~~~~~~i~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~ 194 (494)
.++.++++++++++++++++. .++++|+++|++.|..++...+++.|++|+++|+++.++...+...|.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~ 176 (432)
T PRK10406 97 LISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA 176 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999988764 589999999999999999999999999999999999999888888888777
Q ss_pred HHhhh------------hhhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHH
Q psy4871 195 YVLGS------------ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQII 262 (494)
Q Consensus 195 ~~~~~------------~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 262 (494)
+++.. .++||+.|++.++++++.......+||+|++..+ +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~---------------------------~- 228 (432)
T PRK10406 177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR---------------------------A- 228 (432)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh---------------------------h-
Confidence 65432 3589999999888887766655667887642100 0
Q ss_pred HHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhh
Q psy4871 263 KQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFP 339 (494)
Q Consensus 263 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~ 339 (494)
.+++.++++ +++++.+ . ......+......+.+..|.|.++.+ .|.+. +.+....+..+...++.++
T Consensus 229 ------~~~~~~~~~l~~~~~~~---~-~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~ 298 (432)
T PRK10406 229 ------LKEAGSLKGLWRNRRAF---I-MVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPL 298 (432)
T ss_pred ------hcccccHHHHHhhHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 001123444 4433222 1 11111121122345677788988865 46553 3445555666677788888
Q ss_pred hhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcch
Q psy4871 340 STYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM 419 (494)
Q Consensus 340 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 419 (494)
.|+++||++||+.+..+..+.++....+.... .. ..+.+..+....+...+.+. ..+..+.+.+|.+|++.
T Consensus 299 ~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~ 369 (432)
T PRK10406 299 IGALSDKIGRRTSMLCFGSLAALFTVPILSAL-QN-------VSSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQV 369 (432)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-Hc-------CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCc
Confidence 99999999999887666554433332221111 11 11122212222212122221 22344577899999999
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHhhhch
Q psy4871 420 KAVSCAVINILCTT-LGLISYKLFFLM 445 (494)
Q Consensus 420 r~~~~g~~~~~~~~-~~~i~~~i~~~l 445 (494)
|+++.|+.+..+++ ++...|.+.+.+
T Consensus 370 r~t~~g~~~~~g~~~~g~~~p~~~~~l 396 (432)
T PRK10406 370 RALGVGLSYAVANALFGGSAEYVALSL 396 (432)
T ss_pred cchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999988765 344577777754
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=278.03 Aligned_cols=367 Identities=13% Similarity=0.012 Sum_probs=252.8
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
.+.+..++.++.+....+....++..|.+.+ +++++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~ 103 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIS---TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence 5566667777777777788889999999995 9999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHH-----HhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh---
Q psy4871 129 TTASWIIAMY-----SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE--- 200 (494)
Q Consensus 129 ~~i~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--- 200 (494)
++++.++.++ +++++.+++.|+++|++.+...+...+++.||+|+++||++++++..+.++|.++++.+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 104 SAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 8887776665 58999999999999999999999999999999999999999999999999999998887643
Q ss_pred -h---hhHHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccch
Q psy4871 201 -L---SYMNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNF 275 (494)
Q Consensus 201 -~---~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (494)
. +||..|.+.+++.++..+.. ++.+++|+.. +..++ ++. ..+ ....+++ ..+.++......+
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~---~~~--~~~~~~~----~~~~~~~~~~~~~ 250 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEI---FGE--PISEEDK----ETESTDMTKWQIF 250 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhc---ccC--ccchhhh----ccccccCcHHHHH
Confidence 1 58888888887777665544 4556666321 00000 000 000 0000000 0000000000001
Q ss_pred h-h-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchh
Q psy4871 276 R-E-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRV 351 (494)
Q Consensus 276 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 351 (494)
. . ++++..+ ...+..++..........|.|.++++ .|.+. +++.......++.+++.+++|+++||++||+
T Consensus 251 ~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~ 325 (467)
T PRK09556 251 VEYVLKNPVIW-----LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR 325 (467)
T ss_pred HHHHHcChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 1 1 3333322 22222222223345677889988865 56654 5566667788889999999999999999988
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHH
Q psy4871 352 LFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILC 431 (494)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 431 (494)
.+.....+..++..++... . ..+.+...+..++.+.+. .+..........|.+|++.+|++.|+.+..+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g 394 (467)
T PRK09556 326 ALVACIALALIIFTLGVYQ---H-------ATSEYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVANGIKGTFA 394 (467)
T ss_pred hHHHHHHHHHHHHHHHHHH---h-------cCcHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 7665544433332222221 1 122222333333333222 1121122255679999999999999999999
Q ss_pred HH-HHHHHHHhhhchhh
Q psy4871 432 TT-LGLISYKLFFLMDK 447 (494)
Q Consensus 432 ~~-~~~i~~~i~~~l~~ 447 (494)
++ |.+++|.+.|.+.|
T Consensus 395 ~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 395 YLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHhHHHHhhhHHHHhc
Confidence 97 77999999999998
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=273.09 Aligned_cols=376 Identities=13% Similarity=0.065 Sum_probs=274.2
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
++|.++..++++.++...+.+.++..+|.+.+ ++|.+.++.+|+.+.|.+++.++++++|+++||+|||++++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~---~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~ 79 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSM---TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT 79 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 46788889999999999999999999999996 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheeccc-CCCCchhHHHHHHHHHHHHHHHHHHhhhh----hh
Q psy4871 128 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEIS-ETSIRGTIGTLFQISCHLGILYTYVLGSE----LS 202 (494)
Q Consensus 128 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~ 202 (494)
++.++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++. .+
T Consensus 80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999888888887766 67889999999999999999999988876 49
Q ss_pred hHHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHH------------HHHHHhcCChhhHHHHH----------
Q psy4871 203 YMNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIE------------SLKWLRNKTADQVQSEL---------- 259 (494)
Q Consensus 203 w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~---------- 259 (494)
|||.|++...++++..++. +++||+|+.. +++.+.... .++...+ +........
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 236 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALK-GFLSLWVTSLTLLTGALLL 236 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHH
Confidence 9999999888777665444 6677765311 111111100 0000000 000000000
Q ss_pred -HHHHHcccccccccchh--h-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHH
Q psy4871 260 -QIIKQNTSKNVERTNFR--E-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIIL 333 (494)
Q Consensus 260 -~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 333 (494)
.-...+ ...+.++. + ++++.+.. ..+..+...........+.|.+++. .|++. +++.......++.
T Consensus 237 ~~f~~~e---~~~~~p~~~~~lf~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~ 308 (495)
T PRK14995 237 GLFIRTQ---LAASRPMIDMRLFTHRIILS-----GVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVAS 308 (495)
T ss_pred HHHHHHH---hcCCCCCcCHHHhCCcccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 000000 01112222 2 44443322 1111222222244556677888776 36554 6777778888999
Q ss_pred HHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcc
Q psy4871 334 LVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSE 413 (494)
Q Consensus 334 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (494)
.++.++.|++.||+|+|+.+..+..+.+++.+++..... ..+.+......++.+++.+....+.. ....+
T Consensus 309 ~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~ 378 (495)
T PRK14995 309 GFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF---------STQQWQAWGLMALLGFSAASALLAST-SAIMA 378 (495)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC---------CCchHHHHHHHHHHHHhHHHHHHHHH-HHHHh
Confidence 999999999999999999888887777776655543210 12333445556666666665444344 66778
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 414 YFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 414 ~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
..|++.++.+.++.++...+|+.+|+.+.+.+.+
T Consensus 379 ~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 379 AAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred cCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999987
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=253.50 Aligned_cols=371 Identities=12% Similarity=0.090 Sum_probs=273.9
Q ss_pred hhhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhH
Q psy4871 47 TGRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG 126 (494)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~ 126 (494)
+.++.+.+.+.++.....+..-..+...|.+.+ +.++|.+|+|++.+.++++|.++-.+.|.++||.+.|+.+.+++
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e---~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL 101 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIE---DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence 347777888888888888888888889999995 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhh--hh----
Q psy4871 127 PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG--SE---- 200 (494)
Q Consensus 127 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~~---- 200 (494)
++.++.+++++++++.+.+.+.-++.|...|...|++...++.|+|+++||+..++++.+.++|..+.+++. .+
T Consensus 102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999888877 44
Q ss_pred hhhHHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-h
Q psy4871 201 LSYMNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-F 278 (494)
Q Consensus 201 ~~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 278 (494)
.+||..|++.++++++..+.. +..+++|+-. + ...+.+.++ ++. +.. +.++..+..+.++ +
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---G-----LP~ie~~~~-d~~-------e~~-~~~~~~~~ls~~~i~ 244 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---G-----LPPIEEYRG-DPL-------EIY-EEEKENEGLTAWQIF 244 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---C-----CCCHHHhhc-Cch-------hhh-hhhccCCCccHHHHH
Confidence 389999999999998887655 6677777421 0 000111111 000 000 0000111123333 3
Q ss_pred cCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc-CCCc-chhHHHHHHHHHHHHhhhhhhhhhccc--CchhHHH
Q psy4871 279 MGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRA--GRRVLFL 354 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~ 354 (494)
.+..+.++.++.+.+..+.....-+.+..|.|.++.+. +++. ++......+-.++++|++++|+++||+ |||....
T Consensus 245 ~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~ 324 (448)
T COG2271 245 VKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMA 324 (448)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHH
Confidence 33334444444555555544445688999999999774 5554 677888889999999999999999997 4555443
Q ss_pred HhhH-HHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHH
Q psy4871 355 VSSA-GCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTT 433 (494)
Q Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 433 (494)
+.+. +..++.+.+... + ..+.+...+++++.|+. -.+..-+.-....|..|.+..|++.|+...++++
T Consensus 325 ~i~~~~i~~~~~~~w~~---~-------~~~~~l~~~~l~~iGf~-IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl 393 (448)
T COG2271 325 LIFMLLITASLVLYWLA---P-------NGSYLLDAILLFIIGFL-IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYL 393 (448)
T ss_pred HHHHHHHHHHHHHHHcC---C-------CccHHHHHHHHHHHHHH-HhhHHHHHHHHHhccccHhhccchhchhhhHHHH
Confidence 3333 333333322221 1 12223333333333332 2233333435688999999999999999999999
Q ss_pred -HHHHHHHhhhchhhh
Q psy4871 434 -LGLISYKLFFLMDKH 448 (494)
Q Consensus 434 -~~~i~~~i~~~l~~~ 448 (494)
|...+....|++.|+
T Consensus 394 ~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 394 IGAALAGLPLGYIADT 409 (448)
T ss_pred hhHHhcCCcceeeEec
Confidence 999999999999885
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=265.14 Aligned_cols=377 Identities=17% Similarity=0.213 Sum_probs=268.2
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
++|.....+.+..+..+++.....+..|.+.+ ++|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 90 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISA---EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL 90 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 35666666777777888888788888899985 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhh
Q psy4871 128 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSY 203 (494)
Q Consensus 128 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w 203 (494)
+.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++.+++. .+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888755 489
Q ss_pred HHHHHHHHHHHHHHH-HHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHccccc-ccccchhhhcCc
Q psy4871 204 MNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKN-VERTNFREFMGR 281 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 281 (494)
++.|++.+++.++.. +..+++||++++...+ +.++..+..++.......+.+.+ ..+..++. ..+...+.+.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 246 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQSA---LPEQKATQGTKRSVFKALFQG 246 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccccc---ccccccccchhhHHHHHHhcc
Confidence 999998865555444 4457789988776554 33333333332221110000000 00000000 011112222222
Q ss_pred chHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHH
Q psy4871 282 SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGC 360 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 360 (494)
+..+......... +...........|.|.+..+.+.+. ..+....+..++.+++.++.+++.||+++|+... ...+.
T Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 324 (398)
T TIGR00895 247 KTARITVLLWLLY-FMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLG 324 (398)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHH
Confidence 2222222222222 2222334566677887777777664 5666777788899999999999999999984443 33333
Q ss_pred HHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4871 361 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYK 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~ 440 (494)
++...++... . .+.+......++.+++.+.. .+..++++.|.+|++.|+++.|+.+....++.+++|.
T Consensus 325 ~~~~~~~~~~--~---------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~ 392 (398)
T TIGR00895 325 AVFAVLVGST--L---------FSPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPI 392 (398)
T ss_pred HHHHHHHHHH--h---------hCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332221 1 13334445555666665543 3455689999999999999999999999999999999
Q ss_pred hhhch
Q psy4871 441 LFFLM 445 (494)
Q Consensus 441 i~~~l 445 (494)
+.|.+
T Consensus 393 ~~G~l 397 (398)
T TIGR00895 393 LAGYL 397 (398)
T ss_pred hHHhc
Confidence 99876
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=260.11 Aligned_cols=345 Identities=12% Similarity=0.083 Sum_probs=248.6
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
++|..++.+.++.+..........+.+|.+.+ ++|.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 82 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQ---SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV 82 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 35555555556555554554456667899995 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhh
Q psy4871 128 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSY 203 (494)
Q Consensus 128 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w 203 (494)
+.+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.++.. ++|
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw 162 (390)
T PRK03545 83 LFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGW 162 (390)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888754 599
Q ss_pred HHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCc
Q psy4871 204 MNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGR 281 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 281 (494)
|+.|++.++++++..+.. ..+||.|+. + + . ...+.++ ++++
T Consensus 163 ~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~---------------~-~----------------~~~~~~~~~~~~ 205 (390)
T PRK03545 163 RTTFLAIGGGALITLLLLIKLLPLLPSE-----H---------------S-G----------------SLKSLPLLFRRP 205 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCC-----C---------------c-c----------------hHHHHHHHHhCc
Confidence 999999998877665444 445654310 0 0 0 0001223 4444
Q ss_pred chHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHH
Q psy4871 282 SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAG 359 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 359 (494)
..+....... .... .......|.+.++.+ .|.+. ..+......+++.++++++.+++.||+++|... .+..+
T Consensus 206 ~~~~~~~~~~-~~~~----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~ 279 (390)
T PRK03545 206 ALVSLYLLTV-VVVT----AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIAL 279 (390)
T ss_pred HHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHH
Confidence 3332222111 1111 122334556666555 45554 456666778889999999999999999987654 34444
Q ss_pred HHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Q psy4871 360 CSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 439 (494)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~ 439 (494)
..++...+... ..+.+..++...+.+.+.. ...+.....+.+..| +.|+++.|+.+...++|..++|
T Consensus 280 ~~~~~~~l~~~-----------~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~ 346 (390)
T PRK03545 280 LLVCLLLLLPA-----------ANSEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGA 346 (390)
T ss_pred HHHHHHHHHHH-----------hchHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 43433332221 1233344444555555543 233334466677766 5789999999999999999999
Q ss_pred HhhhchhhhcCC
Q psy4871 440 KLFFLMDKHIGK 451 (494)
Q Consensus 440 ~i~~~l~~~~~~ 451 (494)
.+.|.+.+..+.
T Consensus 347 ~~~G~~~~~~g~ 358 (390)
T PRK03545 347 LLGNQVSLHLGL 358 (390)
T ss_pred HHHHHHHhccCh
Confidence 999999985443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=266.46 Aligned_cols=370 Identities=12% Similarity=0.075 Sum_probs=249.6
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
++.+.....++.+...++....+..+|.+.+ ++|+++.+.|++.+.+.+++.+++++.|+++||+|||+++.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~ 97 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLA---DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence 4445555666667777777777888999995 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhH
Q psy4871 129 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYM 204 (494)
Q Consensus 129 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~ 204 (494)
.+++.++++++++++.+++.|++.|++.|..++...+++.|++|+++|++++++.+.+..+|..+++.+.+. ++||
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998877665 5999
Q ss_pred HHHHHHHHHHHHHHH-HhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcc
Q psy4871 205 NYLTYSLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRS 282 (494)
Q Consensus 205 ~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 282 (494)
+.|++.+++.++..+ ..++++|+|++.......+.. + +. .+ ..+ +.+.++.++++ ++...
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----------~--~~-~~---~~~--~~~~~~~~~~~~~~~~~ 239 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR----------H--DA-LE---LAQ--QQEGAGLSRKEILTKYV 239 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc----------c--cc-cc---cch--hccccCCChhhhHHHHH
Confidence 999998887765543 345678887532100000000 0 00 00 000 00000111222 11101
Q ss_pred hHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhccc--CchhHH-HHhh
Q psy4871 283 NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRA--GRRVLF-LVSS 357 (494)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~-~~~~ 357 (494)
.+.+.++.+.+..+........+..|.|.++.+ .|.+. +.+.......++.++++++.|++.||+ ++|+.. ....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~ 319 (434)
T PRK11663 240 LLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFA 319 (434)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHH
Confidence 111112222222222222345566788888854 46654 556677778889999999999999998 333332 2222
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHH
Q psy4871 358 AGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLI 437 (494)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i 437 (494)
....+....+.... ..+........+..+++ ..+..........|.+|++.|+++.|+.++..++|.++
T Consensus 320 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 388 (434)
T PRK11663 320 AGILLSVGSLWLMP----------FASYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAAL 388 (434)
T ss_pred HHHHHHHHHHHHcc----------cccHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHH
Confidence 12222221111110 11111212222222221 11112222356789999999999999999999999999
Q ss_pred HHHhhhchhhhcC
Q psy4871 438 SYKLFFLMDKHIG 450 (494)
Q Consensus 438 ~~~i~~~l~~~~~ 450 (494)
+|.++|++.+..|
T Consensus 389 ~p~~~g~l~~~~g 401 (434)
T PRK11663 389 SGYPLAKVLEIWH 401 (434)
T ss_pred hcccHHHHHHhcc
Confidence 9999999998544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=264.11 Aligned_cols=356 Identities=16% Similarity=0.131 Sum_probs=243.9
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCC--CCCCCchhHHH-----HHHHHhHhhhhhchHhhhhhhCchhH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPI--PMSPNEGSWVV-----AIIEIGNYLSPIPAGMLVNRIGRKWS 121 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~g~~~-----s~~~~~~~i~~~~~g~l~dr~Grr~~ 121 (494)
++.....+.++.+.++++....+.+.|.+..+ ++ +.++. .+++. ++.+++..+++++.|+++||+|||++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNR--EFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 45567777888899999999888777643212 44 56665 46654 34556778999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHhhHH--------HHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHH
Q psy4871 122 LLMTGPITTASWIIAMYSRSVL--------GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILY 193 (494)
Q Consensus 122 l~~~~~~~~i~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~ 193 (494)
++.+.++++++++++++++++. .++++|+++|++.|..++....++.|++|+++|++..+....+..+|.++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 58899999999999999999999999999999999999999999999988
Q ss_pred HHHhhh------------hhhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHH
Q psy4871 194 TYVLGS------------ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQI 261 (494)
Q Consensus 194 ~~~~~~------------~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (494)
+..+.. .++||+.|++.+++.++.......+||+|+|...+++.++.
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~--------------------- 235 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA--------------------- 235 (438)
T ss_pred HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc---------------------
Confidence 865442 35899999998887766555556678988654322111000
Q ss_pred HHHcccccccccchhh--hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCcc-hhHHHHHHHHHHHHhh
Q psy4871 262 IKQNTSKNVERTNFRE--FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFLP-SDYISILFAIILLVSI 337 (494)
Q Consensus 262 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 337 (494)
+++.+..+ +++++.+ .......+ ......+....|.|.++++ .+.+.. ......+.++..+++.
T Consensus 236 --------~~~~~~~~~l~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~ 303 (438)
T PRK09952 236 --------KKRIPVIEALLRHPGAF---LKIIALRL-CELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTI 303 (438)
T ss_pred --------cccCCHHHHHHHchHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 00011111 2222222 11111111 1222345566677877754 344432 2234445667778888
Q ss_pred hhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCc
Q psy4871 338 FPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS 417 (494)
Q Consensus 338 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 417 (494)
++.|+++||+|||+.+..+.++..++...+..... . .+..+..+...++.+++.+.. .+..+++.+|.+|+
T Consensus 304 ~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~ 374 (438)
T PRK09952 304 PCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE-A-------QSIFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGA 374 (438)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-c-------CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCc
Confidence 99999999999999888776655544333222110 1 112222222333333443332 33455889999999
Q ss_pred chhhHHHHHHHHHHH-HHHHHHHHhhhchhhhc
Q psy4871 418 NMKAVSCAVINILCT-TLGLISYKLFFLMDKHI 449 (494)
Q Consensus 418 ~~r~~~~g~~~~~~~-~~~~i~~~i~~~l~~~~ 449 (494)
+.|+++.|+.+.... +++.++|.+.+++.+..
T Consensus 375 ~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~ 407 (438)
T PRK09952 375 SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF 407 (438)
T ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999776654 89999999999998744
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=266.08 Aligned_cols=386 Identities=13% Similarity=0.111 Sum_probs=263.6
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
++|.....+.++.+.++++....++.+|.+.+ ++|+++.+.+++.+.+.+++.+++++.|+++||+|||++++.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 93 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQG---EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 36667777888888889999999999999995 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhh
Q psy4871 128 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSY 203 (494)
Q Consensus 128 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w 203 (494)
+.+++.++++++++++.+++.|++.|++.+..++....++.|++|+++|+++.++...+..+|..+++.+... .+|
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 173 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW 173 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887765 589
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHH-----HHHcccccccccch---
Q psy4871 204 MNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQI-----IKQNTSKNVERTNF--- 275 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--- 275 (494)
|+.|++..+..++..+....+||++++...+++.++.++..+.....+.......... ...... ......+
T Consensus 174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 252 (496)
T PRK03893 174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFA-GNLQNAAIVA 252 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-hhhcchhHHH
Confidence 9999886665555544556678877654332222111111111111000000000000 000000 0000000
Q ss_pred ----------hh--hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHH-hcCCCc-chhHHHHHHHHHHHHhhhhhh
Q psy4871 276 ----------RE--FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPST 341 (494)
Q Consensus 276 ----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g 341 (494)
.. ...+..+++.........+..+........+.|.+++ +.|.+. +.+.......++.+++.++.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g 332 (496)
T PRK03893 253 VLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG 332 (496)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000011111111111112111112235567888885 566664 566777888899999999999
Q ss_pred hhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhh
Q psy4871 342 YYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKA 421 (494)
Q Consensus 342 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 421 (494)
++.||++||+.+..+..+..+..+++... ............+...+.+.+..+....++.|.+|++.|+
T Consensus 333 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 401 (496)
T PRK03893 333 FLGDWLGTRKAYVCSLLISQLLIIPVFAI-----------GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRA 401 (496)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHhhc-----------cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhh
Confidence 99999999998877766555544333221 1111111212222211222333444557888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 422 VSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 422 ~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
+++|+.+....+|+.++|.+.|.+.+.
T Consensus 402 ~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 402 AGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999883
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=258.26 Aligned_cols=323 Identities=11% Similarity=0.105 Sum_probs=221.6
Q ss_pred cchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHH
Q psy4871 68 AWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYV 147 (494)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~ 147 (494)
..+++.+|.+++ |+++|+.+.|++.+.+.+++.+++++.|+++||+|||++++.+.+....+.+....+++++.+++
T Consensus 8 ~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (368)
T TIGR00903 8 VTFSPVLSLVAE---DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLA 84 (368)
T ss_pred HHHHhhHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 446788999996 99999999999999999999999999999999999998876655555444333333379999999
Q ss_pred HHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHH-Hhh
Q psy4871 148 MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTV-TFM 222 (494)
Q Consensus 148 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~-~~~ 222 (494)
+|+++|++.+. .+.....+.|++|+++|++++++...+..+|.+++++++.. ++||+.|++.++++++..+ ..+
T Consensus 85 ~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 85 CQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 45666667999999999999999999999999999888776 4999999998887766654 446
Q ss_pred ccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccc
Q psy4871 223 FMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTG 301 (494)
Q Consensus 223 ~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 301 (494)
++||+|++.. +. . +.. + ...++++ ++++..+ ......++....
T Consensus 164 ~lp~~p~~~~---~~-------------~--~~~-~------------~~~~~~~ll~~~~~~-----~~~~~~~~~~~~ 207 (368)
T TIGR00903 164 ALPALPFQAA---EG-------------F--GFK-D------------AVKEFGALAGRKDLW-----IIGAILGFGVAL 207 (368)
T ss_pred HcCCCCCCCC---CC-------------c--chH-H------------HHHHHHHHHcChhHH-----HHHHHHHHHHHH
Confidence 7899885420 00 0 000 0 0012444 5554433 222223333344
Q ss_pred hHhHHHhHHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhhcccCch---hHHHH-hhHHHHHHHHHHHHHHHhhhcc
Q psy4871 302 VQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRR---VLFLV-SSAGCSLFSFIAGLYYYVTIEL 377 (494)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 377 (494)
.+.+..|+|.++++.+++...+.... +..+.+.+..+++.||..|| +.... ...+.++....+..
T Consensus 208 ~~~~~~wlp~~L~~~g~s~~~~~~~~---l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~-------- 276 (368)
T TIGR00903 208 FDNLAIWLEAALRPAGLEDIAGDAVA---LAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF-------- 276 (368)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHH---HHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH--------
Confidence 66788899999988776543333333 33334444457888887643 33222 23233332222221
Q ss_pred ccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 378 QYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
..+.+..+....+.+++.. ...+..+++.+|.+|++.|+++.|+.+..+++++.++|.+.+.+.
T Consensus 277 ----~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 277 ----ELNRLALFAFIGIAGLLML-PAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred ----ccccHHHHHHHHHHHHhhh-hhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 1122232333333333322 233445688999999999999999999999999999999998776
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=250.69 Aligned_cols=384 Identities=16% Similarity=0.126 Sum_probs=276.8
Q ss_pred cchhhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCC-------CCCCchhHHHHHHHHhHhhhhhchHhhhhhhC
Q psy4871 45 TYTGRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIP-------MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG 117 (494)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G 117 (494)
..|++...+.++.++.|.++|+...++.+.|.+... .++ .++...+.+..+..+|.++||++.|+++||+|
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~l--Y~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G 112 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYL--YYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG 112 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHH--hcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356788899999999999999999998888776642 222 44556788999999999999999999999999
Q ss_pred chhHHHhhHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHH
Q psy4871 118 RKWSLLMTGPITTASWIIAMYSR-------SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLG 190 (494)
Q Consensus 118 rr~~l~~~~~~~~i~~~~~~~a~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 190 (494)
||+++...++++.+++++++++. -.+.+...|++.|+|.|+-+|.+.+..+|...++.||...+..-+..++|
T Consensus 113 RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 113 RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence 99999999999999999888753 24778999999999999999999999999999999999988877666777
Q ss_pred HHHHHHhhhh-------------------hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhC-ChHHHHHHHHHHhcC
Q psy4871 191 ILYTYVLGSE-------------------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN-QEGKAIESLKWLRNK 250 (494)
Q Consensus 191 ~~~~~~~~~~-------------------~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~-~~~~a~~~~~~~~~~ 250 (494)
.+.|.+++.. .-||..|.+..+++++++...+.+|||++|-.... +.+.|.+..++.-
T Consensus 193 ilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~-- 270 (538)
T KOG0252|consen 193 ILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVL-- 270 (538)
T ss_pred HhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccc--
Confidence 6666655432 14999999999999999888899999999874333 2233322111111
Q ss_pred ChhhHHHHHHHHHHcccc-cccccchh---h-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCcc-hhH
Q psy4871 251 TADQVQSELQIIKQNTSK-NVERTNFR---E-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLP-SDY 324 (494)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~-~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 324 (494)
..+...+ +..... ..++.++. . +..+ .-+.++-....++..- ..++....+...+++..|.... ..+
T Consensus 271 -~~~~~~~----~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllD-iafy~~nL~~s~I~~~ig~~~~~~~~ 343 (538)
T KOG0252|consen 271 -SVDIEAE----STAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLD-IAFYGQNLFQSVIFSAIGVIPSANTY 343 (538)
T ss_pred -ccccchh----hccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhh-hhhhccccHHHHHHHhhccCCCcchH
Confidence 1111111 111111 11122222 1 2211 2233333444444333 3456677777788876665431 111
Q ss_pred ---------HHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHH
Q psy4871 325 ---------ISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLL 395 (494)
Q Consensus 325 ---------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (494)
...+..+..++|..+..+++|++|||+..+.+++++.+..+.++..+... .+.....+...+.
T Consensus 344 ~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~--------~~~~Gf~v~y~l~ 415 (538)
T KOG0252|consen 344 HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL--------ENTIGFVVLYSLT 415 (538)
T ss_pred HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc--------cccCceeehHHHH
Confidence 12223344446778888999999999999999999999888877653211 1333345555566
Q ss_pred HHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 396 GVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
.++..++.+...+.+.+|.+|.+.|++..|+....+-.|++++...+.++.+
T Consensus 416 ~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~ 467 (538)
T KOG0252|consen 416 FFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTD 467 (538)
T ss_pred HHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhh
Confidence 6666777777788899999999999999999999999999999999998887
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=256.92 Aligned_cols=356 Identities=16% Similarity=0.160 Sum_probs=238.9
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHH-HHHHH-----HhHhhhhhchHhhhhhhCchhHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWV-VAIIE-----IGNYLSPIPAGMLVNRIGRKWSL 122 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~s~~~-----~~~~i~~~~~g~l~dr~Grr~~l 122 (494)
++.....+.++.+++.++....+...|.+.+ +++.++.+.+.+ .+... ++..+++++.|+++||+|||+++
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAK---TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 4456778888999999999999999999996 999888886544 33322 22347889999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHhhHH--------HHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHH
Q psy4871 123 LMTGPITTASWIIAMYSRSVL--------GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYT 194 (494)
Q Consensus 123 ~~~~~~~~i~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~ 194 (494)
+.+.+++++++++++++++++ .++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g 169 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA 169 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877 468999999999999999999999999999999999999887777666665
Q ss_pred HHhhh------------hhhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHH
Q psy4871 195 YVLGS------------ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQII 262 (494)
Q Consensus 195 ~~~~~------------~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 262 (494)
+.++. .++||+.|++..+..++........||++++...++
T Consensus 170 ~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~--------------------------- 222 (434)
T PRK15075 170 ALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH--------------------------- 222 (434)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh---------------------------
Confidence 55443 258999999865543332222233344321110000
Q ss_pred HHcccccccccchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhh
Q psy4871 263 KQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPS 340 (494)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 340 (494)
+...+..+++.. +.++......... +......+....|.|.++++ .|.+. +......+..++.+++.++.
T Consensus 223 -----~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 294 (434)
T PRK15075 223 -----RPSMREIFRSLA--ANWRIVLAGMLMV-AMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIG 294 (434)
T ss_pred -----ccccccHHHHHH--HhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000111111 1111122222222 22233356778889999876 46654 45566667888889999999
Q ss_pred hhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchh
Q psy4871 341 TYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMK 420 (494)
Q Consensus 341 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 420 (494)
|+++||+|||+.+..+..+..+........ ... ............+.+.+++. ..+..+.+..|.+|++.|
T Consensus 295 g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~r 365 (434)
T PRK15075 295 GALSDRIGRRPVLIAFTVLAILTAYPALSW-LVA-------APSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVR 365 (434)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HHc-------CCchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCcc
Confidence 999999999998776654433222111111 111 11111122222333334332 334444788999999999
Q ss_pred hHHHHHHHHHHHH-HHHHHHHhhhchhhhcCC
Q psy4871 421 AVSCAVINILCTT-LGLISYKLFFLMDKHIGK 451 (494)
Q Consensus 421 ~~~~g~~~~~~~~-~~~i~~~i~~~l~~~~~~ 451 (494)
+++.|+.+..... ++.++|.+.|++.+..+.
T Consensus 366 g~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 366 TAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred chheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 9999997665554 688899999999986553
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=255.53 Aligned_cols=350 Identities=14% Similarity=0.053 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHH
Q psy4871 50 FGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 129 (494)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 129 (494)
|.++....+..+..+.. ...++.+|.+.+ +++++..+.|++.+++.+++.+++++.|+++||+|||+++..+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~ 78 (377)
T TIGR00890 3 WYVLVGTVIMCFTSGYV-YTWTLLAPPLGR---YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILY 78 (377)
T ss_pred EEEeHHHHHHHHHhhHH-hhhhhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHH
Confidence 34444444444555543 346778899995 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHH
Q psy4871 130 TASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMN 205 (494)
Q Consensus 130 ~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~ 205 (494)
+++.++++++++++.++++|++.|++.+..++....++.|++| ++|+++.++...+.++|.++++.+... .+||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 157 (377)
T TIGR00890 79 GLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPA 157 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHH
Confidence 9999999999999999999999999999988888889999987 569999999999999998765544433 47999
Q ss_pred HHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcch
Q psy4871 206 YLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSN 283 (494)
Q Consensus 206 ~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 283 (494)
.|++.++++++..+.. +++++.|+.. .+. +. + ...++.+.++ ++++..
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~-~-------------~~~~~~~~~~~~~~~~~ 207 (377)
T TIGR00890 158 AFIYMGIIFLLVIVLGAFLIGYPPGQL-IKT---------------NI-E-------------VSVKDYTVWEMLRTPQF 207 (377)
T ss_pred HHHHHHHHHHHHHHHHHHheecCchhc-ccc---------------Cc-c-------------cchhhhhHHHHHcCccH
Confidence 9999998887776555 4454433100 000 00 0 0000112233 444333
Q ss_pred HHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHH
Q psy4871 284 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 362 (494)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 362 (494)
+. .........+ .......+.+.+.++.+.+. ..+....+..+..++++++.+++.||++||+.+..+..+.++
T Consensus 208 ~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 282 (377)
T TIGR00890 208 WV-LYLSFFLNAV----SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAV 282 (377)
T ss_pred HH-HHHHHHHHhH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 31 1111111111 12233344555666666554 455667778889999999999999999999998888877777
Q ss_pred HHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4871 363 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 442 (494)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~ 442 (494)
+.+++.... ....+.......+.+.+.+... +....+..|.+|++.|+++.|+.+....+|..++|.+.
T Consensus 283 ~~~~~~~~~----------~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 351 (377)
T TIGR00890 283 GMAAMLFIP----------MLNDVLFLATVALVFFTWGGTI-SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA 351 (377)
T ss_pred HHHHHHHcc----------cchhHHHHHHHHHHHHHhccch-hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 766554421 1111222233334444443322 34447888999999999999999999999999999999
Q ss_pred hchhhhcC
Q psy4871 443 FLMDKHIG 450 (494)
Q Consensus 443 ~~l~~~~~ 450 (494)
|.+.+..|
T Consensus 352 g~l~~~~g 359 (377)
T TIGR00890 352 SHALTEIG 359 (377)
T ss_pred HHHHhhhc
Confidence 99876433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=248.83 Aligned_cols=341 Identities=11% Similarity=0.002 Sum_probs=245.0
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
.|.+....+.+.+.. ......++.+|.+++ ++++|.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 8 ~~~~~~~~~~~~~~~-~~~~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l 83 (393)
T PRK09705 8 NFMLLVLVLIGLNMR-PLLTSVGPLLPQLRQ---ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLL 83 (393)
T ss_pred HHHHHHHHHHHHHcc-hhhhccchhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHH
Confidence 455555545444432 233567789999996 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-----hhh
Q psy4871 129 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSY 203 (494)
Q Consensus 129 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~~w 203 (494)
++++.++++++++++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.++.. .+|
T Consensus 84 ~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w 162 (393)
T PRK09705 84 IAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW 162 (393)
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999997 779999999988777777777766654 379
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCc
Q psy4871 204 MNYLTYSLIIPIIFTVTFMFM-PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGR 281 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 281 (494)
|+.+.+.++..++..+..+.. ++.|+ + + + + ++...++ ++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~-~------------~-~-~~~~~~~~l~~~ 205 (393)
T PRK09705 163 YQTLAWWALPAVVALFAWWWQSAREVA----------------------S-S------------H-K-TTTTPVRVVFTP 205 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc----------------------c-c------------c-C-CCcCCcccccCH
Confidence 998877666554433333222 11110 0 0 0 0 0001122 3333
Q ss_pred chHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHH
Q psy4871 282 SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGC 360 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 360 (494)
..+. .. +..+....+......|.|.++.+.|.+. +.+....+.+++.++++++.+++.||++||+.+..+..+.
T Consensus 206 ~~~~----l~-~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~ 280 (393)
T PRK09705 206 RAWT----LG-VYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ 280 (393)
T ss_pred hHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 2221 11 1111122235567778898888877664 5667788899999999999999999999999888887776
Q ss_pred HHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccC-CcchhhHHHHHHHHHHHHHHHHHH
Q psy4871 361 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYF-SSNMKAVSCAVINILCTTLGLISY 439 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~~~~i~~ 439 (494)
.++..++.... .+... ...++.+.+.+.. .+.......+.. |++.+++..|+.+....++..++|
T Consensus 281 ~~~~~~~~~~~-----------~~~~~--~~~~l~g~g~g~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp 346 (393)
T PRK09705 281 LVGFCGFIWLP-----------LQLPV--LWAMVCGLGLGGA-FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAP 346 (393)
T ss_pred HHHHHHHHHcc-----------chHHH--HHHHHHHHhccch-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655443221 11111 1223334444332 233434555666 467899999999999999999999
Q ss_pred HhhhchhhhcC
Q psy4871 440 KLFFLMDKHIG 450 (494)
Q Consensus 440 ~i~~~l~~~~~ 450 (494)
.+.|++.|..|
T Consensus 347 ~~~G~l~~~~g 357 (393)
T PRK09705 347 WFSGVLRSISG 357 (393)
T ss_pred HHHHHHHHHhC
Confidence 99999999655
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-30 Score=246.34 Aligned_cols=343 Identities=10% Similarity=0.118 Sum_probs=244.5
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
.|..++.+.++.+..........+.+|.+.+ ++|+++++.++..+++.++..+++++.|.++||+|||++++.+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQ---DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 5666555666655555544455567788885 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhH
Q psy4871 129 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYM 204 (494)
Q Consensus 129 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~ 204 (494)
.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+.++|.+++|.++.. ++||
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~ 174 (394)
T PRK10213 95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR 174 (394)
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888888765 5999
Q ss_pred HHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcc
Q psy4871 205 NYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRS 282 (494)
Q Consensus 205 ~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 282 (494)
+.|++.++++++..+.. ..+||+|+. ++ ....+.++ ++++.
T Consensus 175 ~~f~~~~~l~~~~~l~~~~~~p~~~~~---------------------~~----------------~~~~~~~~~l~~~~ 217 (394)
T PRK10213 175 NVFNAAAVMGVLCIFWIIKSLPSLPGE---------------------PS----------------HQKQNTFRLLQRPG 217 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCcc---------------------cc----------------cchhHHHHHhcCHH
Confidence 99999887776655443 345664310 00 00001223 44433
Q ss_pred hHHHHHHHHHHHHHHHccchHhHHHhH-HHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHH
Q psy4871 283 NMKAFVFMAFLAVFRAFTGVQSIIAYA-NTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGC 360 (494)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 360 (494)
.+.... ...... .+......+. |.+.++.|++. ..+......+++.+++.++.+++.||.++ +.+..+..+.
T Consensus 218 ~~~~~~-~~~~~~----~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~ 291 (394)
T PRK10213 218 VMAGMI-AIFMSF----AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVL 291 (394)
T ss_pred HHHHHH-HHHHHH----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHH
Confidence 332211 111111 1123334444 66666667664 45666777888899999999999999644 4333333333
Q ss_pred HHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4871 361 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYK 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~ 440 (494)
.++.+.+... .++.+......++++++++... +...+++.+..|+ .++...++.....++|..+|+.
T Consensus 292 ~~~~~~l~~~-----------~~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~ 358 (394)
T PRK10213 292 AVSALVLTLW-----------GSDKIVATGVAIIWGLTFALVP-VGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAA 358 (394)
T ss_pred HHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222222 1234444555666666665433 3343567777774 4677778888888999999999
Q ss_pred hhhchhhhcC
Q psy4871 441 LFFLMDKHIG 450 (494)
Q Consensus 441 i~~~l~~~~~ 450 (494)
+.|.+.|..|
T Consensus 359 l~G~l~~~~g 368 (394)
T PRK10213 359 IGGYALDNIG 368 (394)
T ss_pred HHHHHHhccC
Confidence 9999998544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=256.44 Aligned_cols=339 Identities=15% Similarity=0.129 Sum_probs=221.5
Q ss_pred HHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHH
Q psy4871 57 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA 136 (494)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 136 (494)
....+...+......+.+|.+.+ ++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~---~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~ 118 (476)
T PLN00028 42 WISFFTCFVSTFAAAPLLPIIRD---NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCM 118 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33344444444556788888885 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHH----Hhhh---------hhhh
Q psy4871 137 MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY----VLGS---------ELSY 203 (494)
Q Consensus 137 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~----~~~~---------~~~w 203 (494)
+++++++.++++|+++|++.+.. +....++.|++|+++|++++++......+|..+++ .+.. ..+|
T Consensus 119 ~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW 197 (476)
T PLN00028 119 SLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW 197 (476)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Confidence 99999999999999999998765 44566889999999999999998766655555543 3322 1489
Q ss_pred HHHHHHHHHHHHHHHHHhhccCc-chhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCc
Q psy4871 204 MNYLTYSLIIPIIFTVTFMFMPE-SPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGR 281 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~~~~~~~~e-sp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 281 (494)
|+.|++.++++++..+..+++++ .|+ ++.++. .+ + ...++......+++ ++++
T Consensus 198 r~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~-------~~-~------------~~~~~~~~~~~~~~~~~~~ 252 (476)
T PLN00028 198 RIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYREL-------KK-S------------GTMPKDSFSKVLRYGVTNY 252 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhH-------Hh-c------------CccccccHHHHHHHHHcCc
Confidence 99999999988877666655543 331 000000 00 0 00000000112333 4443
Q ss_pred chHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchh-------H
Q psy4871 282 SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRV-------L 352 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~ 352 (494)
+.+. ..+ .++........+..+.|.++.+ .|++. +++....+..++.+++++++|+++||++||+ .
T Consensus 253 ~~~~-~~~----~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~ 327 (476)
T PLN00028 253 RTWI-LAL----TYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWA 327 (476)
T ss_pred hhHH-HHH----HHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHH
Confidence 3321 111 1111122223455677777655 46664 5667777888999999999999999998652 2
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHH
Q psy4871 353 FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCT 432 (494)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 432 (494)
......+.+++.+++.. ..+.+..+..+++++++...+. +..+++..+..| +.+|++.|+.+..+.
T Consensus 328 ~~~~~~l~~i~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~g~ 393 (476)
T PLN00028 328 LWIVQTLGGVFCIWLGR------------ANSLGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTGAGGN 393 (476)
T ss_pred HHHHHHHHHHHHHHhcc------------cchHHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhhcccc
Confidence 22222222222221111 1122233333444444433322 234456666654 679999999999888
Q ss_pred HHHHHHHHhhh
Q psy4871 433 TLGLISYKLFF 443 (494)
Q Consensus 433 ~~~~i~~~i~~ 443 (494)
+|+++++.+.+
T Consensus 394 lg~~i~~~l~~ 404 (476)
T PLN00028 394 VGAVLTQLLFF 404 (476)
T ss_pred HHHHHHHHHHH
Confidence 99999888865
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-31 Score=260.71 Aligned_cols=378 Identities=14% Similarity=0.084 Sum_probs=269.2
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHH
Q psy4871 52 SEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTA 131 (494)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i 131 (494)
++..++++.+...++....++.+|.+.+ ++|.++.+.+++.+.+.++..++.++.|+++||+|||++++.+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAG---DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3456667778888888889999999996 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHH
Q psy4871 132 SWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYL 207 (494)
Q Consensus 132 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f 207 (494)
+.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.+++..+..+|..+++.+++. .+||+.|
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 999999999999999999999999999999999999999999999999999999999999998888766 5899999
Q ss_pred HHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHH--------HHH-H-hcCChhh-HHHHHHH------------HH
Q psy4871 208 TYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIES--------LKW-L-RNKTADQ-VQSELQI------------IK 263 (494)
Q Consensus 208 ~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~--------~~~-~-~~~~~~~-~~~~~~~------------~~ 263 (494)
++.++++++..+.. +++||+++. .+++.+..... +.. . .+.+.+. ...+... ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV 237 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99888877665444 556664421 11111111100 000 0 0000000 0000000 00
Q ss_pred HcccccccccchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhh
Q psy4871 264 QNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPST 341 (494)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g 341 (494)
.+.+++++..+.+-++++.++...+ ..++.. ...+....+.|.++++ .|.+. +.+.......++.+++.++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 312 (485)
T TIGR00711 238 WELTDDNPLVDLRLFKYRNFTIGCV-YMSLLG----LGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAG 312 (485)
T ss_pred HHHcCCCCccCHHHHcCCChHHHHH-HHHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011111111155544433222 222111 1234556677888876 45554 566777778889999999999
Q ss_pred hhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhh
Q psy4871 342 YYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKA 421 (494)
Q Consensus 342 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 421 (494)
++.||++||+.+..+..+.+++..++.+... . ..+.+.......+.+++.+....+.. ....+..|++.++
T Consensus 313 ~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g 383 (485)
T TIGR00711 313 RMGDKIDPRKLVTIGLILYAVGFYWRAFTFT-P-------DTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIA 383 (485)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHhccCC-C-------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHh
Confidence 9999999999988888777777665542110 0 12233344445556666555444444 5566778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 422 VSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 422 ~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
++.|+.+....+|+.+++.+.+.+.+.
T Consensus 384 ~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 384 RGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999873
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-30 Score=252.86 Aligned_cols=367 Identities=12% Similarity=0.069 Sum_probs=237.4
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
+|.++..+++.......+....+..+|.+.+ + ++++.+.+++.+++.+++++++++.|+++||+|||++++.+.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~ 102 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 102 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence 4555555555555555555556677788884 7 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHH-HHHHHhhh----
Q psy4871 129 TTASWIIAMYSR----SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGI-LYTYVLGS---- 199 (494)
Q Consensus 129 ~~i~~~~~~~a~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~---- 199 (494)
.+++.+++++++ +++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|. +.+++++.
T Consensus 103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 182 (452)
T PRK11273 103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW 182 (452)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999888764 788899999999999998888888889999999999999999999998886 44554432
Q ss_pred hhhhHHHHHHHHHHHHHHH-HHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccc-cccccchhh
Q psy4871 200 ELSYMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK-NVERTNFRE 277 (494)
Q Consensus 200 ~~~w~~~f~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 277 (494)
..+||+.|++.+++.++.. +..+++||+|+....+. .++.+ . +..+ +.+++.++ ...+..+++
T Consensus 183 ~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~-------~-~~~~------~~~~~~~~~~~~~~~~~~ 247 (452)
T PRK11273 183 FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYK-------N-DYPD------DYNEKHEQELTAKQIFMQ 247 (452)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhh-------h-cccc------ccccccCCCccHHHHHHH
Confidence 2489999999888777654 44467788874311000 00000 0 0000 00000000 000111111
Q ss_pred --hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc-CCCc-chhHHHHHHHHHHHHhhhhhhhhhccc--Cchh
Q psy4871 278 --FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRA--GRRV 351 (494)
Q Consensus 278 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~ 351 (494)
++++..+ ...+..+......+....|.|.++++. +++. ..+....+..++.+++.++.|+++||+ +||.
T Consensus 248 ~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~ 322 (452)
T PRK11273 248 YVLPNKLLW-----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 322 (452)
T ss_pred HHHcChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 2232222 222222222222456677899999764 5553 455666677888889999999999999 4444
Q ss_pred HHH-HhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHH
Q psy4871 352 LFL-VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINIL 430 (494)
Q Consensus 352 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 430 (494)
... ....+..++.+.+... . ..+.+...+.....+.+.. +.......+..|.+|++.||++.|+.+..
T Consensus 323 ~~~~~~~~l~~~~~~~~~~~---~-------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 391 (452)
T PRK11273 323 ATGVFFMTLVTIATIVYWLN---P-------AGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLF 391 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHh---c-------ccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHH
Confidence 322 2222222222222111 0 1122222222223332211 11122234567999999999999999999
Q ss_pred HHHHHHH-HHHhhhchhhhcC
Q psy4871 431 CTTLGLI-SYKLFFLMDKHIG 450 (494)
Q Consensus 431 ~~~~~~i-~~~i~~~l~~~~~ 450 (494)
.++++.+ +|.+.|.+.|..|
T Consensus 392 ~~~g~~~~g~~v~g~l~~~~g 412 (452)
T PRK11273 392 GYLGGSVAASAIVGYTVDFFG 412 (452)
T ss_pred HHHHHHHhhhhhHHHHHHHhc
Confidence 9998765 7999999988444
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=252.32 Aligned_cols=361 Identities=17% Similarity=0.184 Sum_probs=247.2
Q ss_pred hhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhH
Q psy4871 63 TGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSV 142 (494)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~ 142 (494)
..++....+...|.+.+ ++|.++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
T TIGR00893 6 NYLDRANLSFAAPMLQE---DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82 (399)
T ss_pred HHHHHHhhhHhHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence 34455666777788885 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHH
Q psy4871 143 LGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFT 218 (494)
Q Consensus 143 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~ 218 (494)
+.++++|++.|++.+...+....++.|++|+++|++++++......+|.++++.++.. .+||+.|++.+++.++..
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG 162 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888765 489999999888877766
Q ss_pred HHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHH
Q psy4871 219 VTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVF 296 (494)
Q Consensus 219 ~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 296 (494)
+.. ++.||+|+... ..+.++.....+... .+.+...+++......++ ++++..+ ...+..+
T Consensus 163 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 225 (399)
T TIGR00893 163 VLWLKFIPDPPQKAK-WLTEEEKYIVVGGLL-----------AEQQGKGPSTPKKYQIKELLKDRRVW-----GLALGQF 225 (399)
T ss_pred HHhhheecCCCCccc-cCCHHHHhhcchhhc-----------cccccccccCCCccchHHHhcCHHHH-----HHHHHHH
Confidence 554 45666552110 000000000000000 000000011112223444 4444322 2222222
Q ss_pred HHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHH-HHhhHHHHHHHHHHHHHHHh
Q psy4871 297 RAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLF-LVSSAGCSLFSFIAGLYYYV 373 (494)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 373 (494)
...........+.|.++++ .+.+. +.+.......++.+++.++.+++.||++||+.. ........++.+........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (399)
T TIGR00893 226 LVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA 305 (399)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 2223345667778887765 45443 456677778888999999999999999988621 11111111111111111100
Q ss_pred hhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhcC
Q psy4871 374 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~ 450 (494)
. . ..+.....+.....+.+ ..+..+..+++..|.+|++.|+++.|+.+....++..++|.+.|.+.+..+
T Consensus 306 ~-~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 306 T-N-----YVNIPYAALALVALGFF-GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred h-c-----cchhHHHHHHHHHHHHh-chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 0 0 01111222222222222 223566777899999999999999999999999999999999999987554
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=247.98 Aligned_cols=342 Identities=13% Similarity=0.001 Sum_probs=251.5
Q ss_pred HHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH
Q psy4871 58 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM 137 (494)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 137 (494)
.+.+...+..+...+.+|.+.. +++.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVL---AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 4445555666677788888885 8899999999999999999999999999999999999999999999999999888
Q ss_pred HHh-----hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHH
Q psy4871 138 YSR-----SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLT 208 (494)
Q Consensus 138 ~a~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~ 208 (494)
+++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++.. .+||+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 162 (365)
T TIGR00900 83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 (365)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888 999999999999999999999999999999999999999999999999999999888766 58999999
Q ss_pred HHHHHHHHHHHHhhcc--CcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHH
Q psy4871 209 YSLIIPIIFTVTFMFM--PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMK 285 (494)
Q Consensus 209 ~~~~~~~~~~~~~~~~--~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 285 (494)
+.++..++..+..+.+ ||.++. ++ ++..++..+ +.+..++. ++++..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~----~~---------------~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 214 (365)
T TIGR00900 163 VDAVGFAISALLIVSVRIPELAAS----EI---------------QALSNAVLR---------DTREGIKFVLKNPLLRT 214 (365)
T ss_pred HHHHHHHHHHHHHHhcccccCCCc----cc---------------cccchhHHH---------HHHhHHHHHHcCcHHHH
Confidence 8887766655444333 332210 00 000000000 01112333 34433332
Q ss_pred HHHHHHHHHHHHHccchHhHH-HhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHH
Q psy4871 286 AFVFMAFLAVFRAFTGVQSII-AYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 362 (494)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 362 (494)
......+... . ..... .+.|.+.++ .+.+. +.+.......++.+++.++.+++.||.+||+.+..+..+.++
T Consensus 215 -~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 289 (365)
T TIGR00900 215 -LLLLALLFNL---V-FAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGL 289 (365)
T ss_pred -HHHHHHHHHH---H-HHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 2222221111 1 22222 566777765 45543 556677778888899999999999999999988877666666
Q ss_pred HHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4871 363 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 442 (494)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~ 442 (494)
+...+.... ++.+...+..++.+++.+.. .+...++..|..|++.|+++.|+.+....++..++|.+.
T Consensus 290 ~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 290 AILVVGLTP-----------PNFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHHHHHhhc-----------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554421 12344455556666665543 445558899999999999999999999999999999999
Q ss_pred hchhh
Q psy4871 443 FLMDK 447 (494)
Q Consensus 443 ~~l~~ 447 (494)
|.+.|
T Consensus 358 g~l~~ 362 (365)
T TIGR00900 358 GPLAD 362 (365)
T ss_pred HHHHH
Confidence 98875
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-30 Score=242.39 Aligned_cols=342 Identities=13% Similarity=0.031 Sum_probs=239.5
Q ss_pred HHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHH
Q psy4871 55 HACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI 134 (494)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 134 (494)
+..++.+.........+++.+.+.++ ++++|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++.++
T Consensus 38 ~s~~~f~~~F~~w~~~~~l~~~~~~~--~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~ 115 (462)
T PRK15034 38 ISVSCLLLAFCVWMLFSAVTVNLNKI--GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCV 115 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 33333333344555667777776533 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-----hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhh----------
Q psy4871 135 IAMYS-----RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGS---------- 199 (494)
Q Consensus 135 ~~~~a-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~---------- 199 (494)
+.+++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++++.....++|..+++++..
T Consensus 116 ~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~ 194 (462)
T PRK15034 116 WLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAF 194 (462)
T ss_pred HHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99987 8999999999999998 7788999999999999999999999997666666654433331
Q ss_pred ------------hhhhHHHHHHHHHHHHHHHHHhhc-cCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcc
Q psy4871 200 ------------ELSYMNYLTYSLIIPIIFTVTFMF-MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNT 266 (494)
Q Consensus 200 ------------~~~w~~~f~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (494)
..+||...++..++.++..++.++ +++.|. .
T Consensus 195 ~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~----------------------~-------------- 238 (462)
T PRK15034 195 LGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS----------------------S-------------- 238 (462)
T ss_pred hccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----------------------c--------------
Confidence 124788777777777666655543 333220 0
Q ss_pred cccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhh
Q psy4871 267 SKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYI 344 (494)
Q Consensus 267 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~ 344 (494)
+.......+ ++++..| .+.+.+++.++++..+.+|.|++.++. ++. .......+..+...+.++++|+++
T Consensus 239 --~~~~~~~~~vlk~~~~W-----llslly~~tFG~fvg~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LA 310 (462)
T PRK15034 239 --RASIADQLPVLQRLHLW-----LLSLLYLATFGSFIGFSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAIS 310 (462)
T ss_pred --ccCHHHHHHHhCCCchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 000112223 4555444 233333444455667777889888763 332 223334455677889999999999
Q ss_pred cccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCc-------
Q psy4871 345 DRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS------- 417 (494)
Q Consensus 345 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------- 417 (494)
||+|+++++.++++.+.++...+....... ...+.+.....++....+.+++..++. -+++.++|.
T Consensus 311 DRiG~~~vl~~~~i~~~i~~~~~~l~lp~~------~~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~ 383 (462)
T PRK15034 311 DKFGGVRVTLINFIFMAIFSALLFLTLPGT------GSGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVK 383 (462)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHhccc------cccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhccc
Confidence 999999999988887777664433322100 011223333333333344455544443 677777774
Q ss_pred --------------chhhHHHHHHHHHHHHHHHHHHHhhhchhhhcC
Q psy4871 418 --------------NMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 418 --------------~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~ 450 (494)
++.|.+.|+....+.+|+++.|.++|...+..|
T Consensus 384 ~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g 430 (462)
T PRK15034 384 MKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG 430 (462)
T ss_pred ccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC
Confidence 157899999999999999999999999987444
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=244.56 Aligned_cols=330 Identities=16% Similarity=0.104 Sum_probs=233.5
Q ss_pred HHHHhhhcccchhhHHHh-hhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH
Q psy4871 59 AAFTTGMSFAWSAPVLEE-LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM 137 (494)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 137 (494)
+.+......+...|.+|. +.+ ++|.|+.+.|++.+++.+++.++++++|+++||+|||++++.+.++..++.+...
T Consensus 23 ~~~~~~~~~~~~~p~l~~~l~~---~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 99 (392)
T PRK12382 23 AVFLTYMTVGLPLPVIPLFVHH---DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYL 99 (392)
T ss_pred HHHHHHHHHHHHhhhhhHHHHH---hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 334444456667788875 454 8999999999999999999999999999999999999999999888777654332
Q ss_pred H--------HhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHH
Q psy4871 138 Y--------SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMN 205 (494)
Q Consensus 138 ~--------a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~ 205 (494)
. .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++.. ++||+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 179 (392)
T PRK12382 100 LAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAA 179 (392)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence 2 35889999999999999999989899999999999999999999999888888888887755 58998
Q ss_pred HHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchH
Q psy4871 206 YLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNM 284 (494)
Q Consensus 206 ~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 284 (494)
.+.+..+..++........||.+. +++ ++.+.++ ++ ..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~----------------~~~~~~~~~~--~~~ 219 (392)
T PRK12382 180 LALTTMVLPLLAWAFNGTVRKVPA----------------------HAG----------------ERPSLWSVVG--LIW 219 (392)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCC----------------------Ccc----------------cCchHHHHHH--HHH
Confidence 777665554443332223333210 000 0001111 11 111
Q ss_pred HHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHH
Q psy4871 285 KAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFS 364 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 364 (494)
......... . .+......+.+.++++.+.+ ..+......+++.+++.++.+++.||+++|+.+..+..+.+++.
T Consensus 220 ~~~~~~~l~-~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~ 293 (392)
T PRK12382 220 KPGLGLALQ-G----VGFAVIGTFVSLYFASKGWA-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGL 293 (392)
T ss_pred HhHHHHHHH-H----HHHhHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHH
Confidence 111111111 1 11334556667777766544 34455556777788999999999999999998888877777766
Q ss_pred HHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhc
Q psy4871 365 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 444 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~ 444 (494)
+++... ++.+...+..++.+.+.+... +.......+.+|++.||++.|+.++...++..++|.+.|.
T Consensus 294 ~~~~~~------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~ 360 (392)
T PRK12382 294 LLLWLA------------PTAWVALAGAALTGAGCSLIF-PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGM 360 (392)
T ss_pred HHHHHc------------ccHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654432 233334444555555554333 3444667888999999999999999999999999999999
Q ss_pred hhhhcC
Q psy4871 445 MDKHIG 450 (494)
Q Consensus 445 l~~~~~ 450 (494)
+.+..|
T Consensus 361 l~~~~g 366 (392)
T PRK12382 361 LATSFG 366 (392)
T ss_pred HHHHhC
Confidence 987544
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=254.34 Aligned_cols=372 Identities=16% Similarity=0.146 Sum_probs=273.4
Q ss_pred HHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHH
Q psy4871 53 EAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTAS 132 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 132 (494)
....+.............++..+ . + .+..+.....+..+++++|..+|++++|+++||+|||++++++.++..++
T Consensus 87 ~~~~~~~~~~~~~~~~~~s~~~~--~-~--~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~ 161 (521)
T KOG0255|consen 87 VIVICLDGWVYDYGSSVYSIVSE--W-N--LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIF 161 (521)
T ss_pred ccccccceeEecCCCCcccccch--h-c--eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHH
Confidence 33333333333334444444433 2 2 66778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-h-hhHHHHHHH
Q psy4871 133 WIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-L-SYMNYLTYS 210 (494)
Q Consensus 133 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-~-~w~~~f~~~ 210 (494)
.+++++++|++.+++.|++.|++.++.......++.|++++++|+.+..+ ......|..+++..+.+ . +||+.+++.
T Consensus 162 ~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~ 240 (521)
T KOG0255|consen 162 GILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWII 240 (521)
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 55555555555555544 3 799999999
Q ss_pred HHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCC--hhhHHHHHHH---HHHcccc-cccccchhh-hcCcch
Q psy4871 211 LIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKT--ADQVQSELQI---IKQNTSK-NVERTNFRE-FMGRSN 283 (494)
Q Consensus 211 ~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~-~~~~~~~~~-~~~~~~ 283 (494)
.++.++..+..++.||||+|+..+++.+++.+.+++..+.+ .....+..+. .+..... .+++..+.+ ++.+..
T Consensus 241 ~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 320 (521)
T KOG0255|consen 241 SIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRL 320 (521)
T ss_pred HHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHH
Confidence 99999888887777899999999999999999999886432 1111111111 1111111 223345667 776656
Q ss_pred HHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHH
Q psy4871 284 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLF 363 (494)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 363 (494)
++..+...+.++. ....+| ...+...+.+.+......+.+.....+....+...|++|||.....+..+..++
T Consensus 321 ~~~~~~~~~~~~~------~~~~y~-gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~ 393 (521)
T KOG0255|consen 321 RYRTLYLLFIWFV------FSLVYY-GLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIG 393 (521)
T ss_pred HHHHHHHHHHHHH------HhHHHH-hhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 6666655555532 122222 222223334446666666677788888888899999999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy4871 364 SFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF 443 (494)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~ 443 (494)
+++.++..... ..+...+...+..++.+.++... +.+..|++|+..|..+.+..++...++++++|.+..
T Consensus 394 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~ 463 (521)
T KOG0255|consen 394 LLLFGWLPDDL---------GGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPL 463 (521)
T ss_pred HHHHHHhhccc---------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888764222 11233444444444445555544 689999999999999999999999999999998875
Q ss_pred chhh
Q psy4871 444 LMDK 447 (494)
Q Consensus 444 ~l~~ 447 (494)
....
T Consensus 464 ~~~~ 467 (521)
T KOG0255|consen 464 LLRQ 467 (521)
T ss_pred HHhh
Confidence 4433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=244.45 Aligned_cols=338 Identities=14% Similarity=0.078 Sum_probs=240.7
Q ss_pred HHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHH
Q psy4871 54 AHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW 133 (494)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 133 (494)
...++..+..+.......+.+|.+.+ ++|.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAH---DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHH---HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 34455666667777778888999995 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHH
Q psy4871 134 IIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTY 209 (494)
Q Consensus 134 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~ 209 (494)
++++++++++.+++.|++.|++.+...+....++.|++++++|++++++...+..+|..+++.++.. .+||+.|++
T Consensus 83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 9999999999999999999999999888889999999999999999999999999988888777655 589999999
Q ss_pred HHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhhhcCcchHHHHH
Q psy4871 210 SLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFV 288 (494)
Q Consensus 210 ~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (494)
.+++.++..+.. +++||.++ +. +.+.. ..++.++++..+. ..
T Consensus 163 ~~~~~~~~~~~~~~~lp~~~~----~~----------------~~~~~----------------~~~~~~~~~~~~~-~~ 205 (382)
T PRK10091 163 IAVFNIAVLASIYFWVPDIRD----EA----------------KGGLR----------------EQFHFLRSPAPWL-IF 205 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCCc----cc----------------ccCHH----------------HHHHHhcChHHHH-HH
Confidence 988776665443 55777531 00 00000 0011122222221 11
Q ss_pred HHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHH
Q psy4871 289 FMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 366 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 366 (494)
. . .+....+......|.+.++.+ .|.+. ..+......+++.+++.++.+++.||+++|+.+..+..+.+++.++
T Consensus 206 ~---~-~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~ 281 (382)
T PRK10091 206 A---A-TMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLM 281 (382)
T ss_pred H---H-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHH
Confidence 1 1 111111122334455555543 56554 5667777888999999999999999999999888887777766655
Q ss_pred HHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 367 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
+.... +..+...+..++.+.+......+.......+..|++.++.+ ..+....+|.+++|.+.|.+.
T Consensus 282 ~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~ 348 (382)
T PRK10091 282 LFFFG-----------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMML 348 (382)
T ss_pred HHHHH-----------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHH
Confidence 43321 12233333333344433222223332344455555555544 346778999999999999999
Q ss_pred hh
Q psy4871 447 KH 448 (494)
Q Consensus 447 ~~ 448 (494)
|.
T Consensus 349 ~~ 350 (382)
T PRK10091 349 TL 350 (382)
T ss_pred Hc
Confidence 84
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=244.27 Aligned_cols=346 Identities=12% Similarity=0.074 Sum_probs=251.4
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
++.+.+.++++.+..+......++.+|.+.+ ++++|+++.+++.+.+.+++.+++++.|++.||+|||++++.+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~ 81 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAE---YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL 81 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5666777788888888888888899999995 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-----hhh
Q psy4871 129 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSY 203 (494)
Q Consensus 129 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~~w 203 (494)
.+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++.+..+....+|..++|.+... .+|
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw 161 (394)
T PRK03699 82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW 161 (394)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 999999999999999999999999999999999999999999999999999998888888888777766543 589
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhhhcCcch
Q psy4871 204 MNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSN 283 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (494)
|+.|.+.+++.++..+..++ .+.|+. ++++. + +++ ...++..+
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~--------------------~~~~~-------~---~~~---~~~~~~~~--- 204 (394)
T PRK03699 162 YWVYACIGLVYVAIFILTLF-SEFPAL--------------------GKHAP-------K---ADK---PVAKEKWG--- 204 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCccc--------------------cccCc-------c---ccC---ccccccCC---
Confidence 99999888877666544433 222210 00000 0 000 00011001
Q ss_pred HHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHH
Q psy4871 284 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCS 361 (494)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 361 (494)
+.+....+..+......+.+..|.|.++++ .+.+. +.+.......++.++++++.+++.||+++|+.+.....+..
T Consensus 205 --~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~ 282 (394)
T PRK03699 205 --IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLAL 282 (394)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 111122222222222345677889999865 46654 56666777788899999999999999999988877666555
Q ss_pred HHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy4871 362 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 441 (494)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i 441 (494)
+...++... ++.+...+..+..+++.+. ..+...++..+..|.+ ++...+.......+|..++|.+
T Consensus 283 ~~~~~~~~~------------~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~ 348 (394)
T PRK03699 283 VLMYLFVNT------------DDPSHLLYAILGLGFFSSA-IYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVV 348 (394)
T ss_pred HHHHHHHHc------------CCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHH
Confidence 544433221 2233333344444544332 3334435666666644 6778889999999999999999
Q ss_pred hhchhhhcC
Q psy4871 442 FFLMDKHIG 450 (494)
Q Consensus 442 ~~~l~~~~~ 450 (494)
.|++.+..|
T Consensus 349 ~G~l~~~~g 357 (394)
T PRK03699 349 TSPIVAHFG 357 (394)
T ss_pred HHHHHHHhC
Confidence 999998444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=245.36 Aligned_cols=340 Identities=18% Similarity=0.236 Sum_probs=246.5
Q ss_pred HHHHHHhhhcccchhhHHH-hhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHH
Q psy4871 57 CIAAFTTGMSFAWSAPVLE-ELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWII 135 (494)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 135 (494)
+++.+...+......+.+| .+.+ ++|.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 78 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAE---ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL 78 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHC---CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence 3455666667777888888 7874 99999999999999999999999999999999999999999999999999777
Q ss_pred HHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHH
Q psy4871 136 AMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSL 211 (494)
Q Consensus 136 ~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~ 211 (494)
..++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.++.. .+||+.|++.+
T Consensus 79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 77778888999999999999999999999999999999999999999999999999999998876 48999999999
Q ss_pred HHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHccccccccc-chhh-hcCcchHHHHH
Q psy4871 212 IIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERT-NFRE-FMGRSNMKAFV 288 (494)
Q Consensus 212 ~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~ 288 (494)
++.++..++. ++++++|+....+.+.+ ++ .+++.+.. .++. .+++..+ ..+
T Consensus 159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~--------------~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~ 212 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPPPRERESPKE--------------SE-----------SKKPKPLKPGFKSLFKNPVLW-ILL 212 (352)
T ss_dssp HHHHHHHHHHHCCC---STTTT--SSTT--------------TT-------------HHHCCCH-CTHHHHHHCCH-HHH
T ss_pred chhhhhhhhHhhhhhhcccccccccccc--------------cc-----------cccccccccccccccccchhh-hhh
Confidence 9998887643 45554432110000000 00 00001111 2344 3333332 122
Q ss_pred HHHHHHHHHHccchHhHHHhHHHH-HHhcCCC-c-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHH
Q psy4871 289 FMAFLAVFRAFTGVQSIIAYANTI-FASSETF-L-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSF 365 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 365 (494)
....... ........+.|.+ .+..+.+ . +.+....+..+..+++.++.+++.||+++|+..........+..+
T Consensus 213 ~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 288 (352)
T PF07690_consen 213 IAFFLFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGAL 288 (352)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 2222221 1234577777876 3445555 2 455567778888888899999999999998777776666666655
Q ss_pred HHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Q psy4871 366 IAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 439 (494)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~ 439 (494)
.+...... .+....+...++.+++.+.. .+....+..+..|++.+|++.|+.+...++++.++|
T Consensus 289 ~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 289 GLLLLPFS---------SSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHCCSHHH---------CHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 54443221 12334444555566655543 456668999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=250.56 Aligned_cols=364 Identities=15% Similarity=0.112 Sum_probs=241.1
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
+|.++..+.+............+..+|.+.+ ++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 93 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQ---IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLL 93 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHH---HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHH
Confidence 5666655555544333333445667888885 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHH-HHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhh
Q psy4871 129 TTASWIIAMYSRSVLGLYV-MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSY 203 (494)
Q Consensus 129 ~~i~~~~~~~a~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w 203 (494)
.++++++++++++++.+++ .|++.|++.+...+....++.++++ ++|+++.++...+..+|..+++.++.. .+|
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw 172 (455)
T TIGR00892 94 ASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGW 172 (455)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999998865 5799999998877777888899996 679999999999999998888777654 589
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccch--hh-hc
Q psy4871 204 MNYLTYSLIIPIIFTVTFMFM-PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNF--RE-FM 279 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~ 279 (494)
|+.|++.+++.++..+..+++ ++.+.. .+.+.++ .+ ... ++... ++. +. .....+..++ .+ ++
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~~---~~~--~~~~~-~~~---~~-~~~~~~~~~~~~~~~~~ 239 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-KE---GLP--PDGST-KKL---SK-KSTAEKINRFLDFSLFT 239 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc-cc---cCC--CCCcc-ccc---cc-cchhhhhhhhcchHHhc
Confidence 999999998877665544333 322110 0000000 00 000 00000 000 00 0000000111 12 43
Q ss_pred CcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhccc--CchhHHHHh
Q psy4871 280 GRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRA--GRRVLFLVS 356 (494)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~ 356 (494)
++.++ ......+....+......|.+.+.++.+.+. ..+....+.+++.++++++.+++.||. ++|+....+
T Consensus 240 ~~~~~-----~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 314 (455)
T TIGR00892 240 HRGFL-----VYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFS 314 (455)
T ss_pred CchHH-----HHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHH
Confidence 43332 1111111111223445567777777777664 566677778888889999999999974 333333322
Q ss_pred h--HHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHH
Q psy4871 357 S--AGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTL 434 (494)
Q Consensus 357 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 434 (494)
. ++.+++.+++.. ..+.+..++..++.+++++. ..+...+++.|.+|++.++++.|+.++...+|
T Consensus 315 ~~~~~~~l~~ll~~~------------~~~~~~~~i~~~~~G~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg 381 (455)
T TIGR00892 315 FALLFNGLTHLLCAL------------AGDYTGLVIYCIFFGLSFGS-VGALLFEVLMDLVGAQRFSSAVGLVTIVECCA 381 (455)
T ss_pred HHHHHHHHHHHHHHH------------hchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHH
Confidence 2 222222222221 12334445555666665543 33455578889999999999999999999999
Q ss_pred HHHHHHhhhchhh
Q psy4871 435 GLISYKLFFLMDK 447 (494)
Q Consensus 435 ~~i~~~i~~~l~~ 447 (494)
.+++|.+.|.+.+
T Consensus 382 ~~igp~i~G~l~~ 394 (455)
T TIGR00892 382 VLIGPPLAGRLVD 394 (455)
T ss_pred HHccccceeeeeh
Confidence 9999999999987
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=241.66 Aligned_cols=334 Identities=16% Similarity=0.108 Sum_probs=240.3
Q ss_pred HHHHHHHHhhhcccchhhHHHh-hhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHH
Q psy4871 55 HACIAAFTTGMSFAWSAPVLEE-LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW 133 (494)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 133 (494)
...+..+...++.+...+.+|. +.+ ++|.++.+.|++.+++.+++.+++++.|+++||+|||++++.+.++.+++.
T Consensus 19 ~l~~~~~~~~~~~~~~~~~l~~~i~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (399)
T PRK05122 19 SIVMFTFISYLTIGLPLAVLPGYVHD---QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSG 95 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHH
Confidence 3455556666677778888886 454 899999999999999999999999999999999999999999999988887
Q ss_pred HHHHHH--------hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----h
Q psy4871 134 IIAMYS--------RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----L 201 (494)
Q Consensus 134 ~~~~~a--------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~ 201 (494)
+.++++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.++.. +
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 175 (399)
T PRK05122 96 LLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG 175 (399)
T ss_pred HHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc
Confidence 766553 2577899999999999999999999999999999999999999988888888777777654 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcC
Q psy4871 202 SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMG 280 (494)
Q Consensus 202 ~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 280 (494)
+|++.+++..+..++..+.....|+++. ++ + ++.++++ ++
T Consensus 176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~----------------~~~~~~~~~~- 216 (399)
T PRK05122 176 GLAGLGLLIMLLALLGLLLARPRPAVPP---------------------VK-G----------------ERLPFRRVLG- 216 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCC---------------------CC-c----------------cchhHHHHHH-
Confidence 8999888877666554443333333220 00 0 0001111 11
Q ss_pred cchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHH
Q psy4871 281 RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGC 360 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 360 (494)
..+... ....+.. .+......|.+.++.+.+.+ +.+.......++.+++.++.+++.||+++|+.+..+..+.
T Consensus 217 -~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 289 (399)
T PRK05122 217 -RVWPYG-MGLALAS----IGFGTIATFITLYYAARGWD-GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVE 289 (399)
T ss_pred -HHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111111 1111111 11234555667777665543 4445556677888899999999999999999888887777
Q ss_pred HHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4871 361 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYK 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~ 440 (494)
+++.+++... ++.+..++..++.+++++... +.......|..|++.|+++.|+.+....+|..+++.
T Consensus 290 ~~~~~~~~~~------------~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 356 (399)
T PRK05122 290 ILGLLLLWLA------------PSPWMALIGAALTGFGFSLVF-PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP 356 (399)
T ss_pred HHHHHHHHHh------------ccHHHHHHHHHHHHHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766555442 233444445556666655433 333356678899999999999999999999999999
Q ss_pred hhhchhhhcC
Q psy4871 441 LFFLMDKHIG 450 (494)
Q Consensus 441 i~~~l~~~~~ 450 (494)
+.|.+.+..+
T Consensus 357 ~~g~l~~~~g 366 (399)
T PRK05122 357 LAGLVASWFG 366 (399)
T ss_pred HHHHHHHHcC
Confidence 9999987544
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=239.69 Aligned_cols=354 Identities=14% Similarity=0.063 Sum_probs=255.6
Q ss_pred hhhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhH
Q psy4871 47 TGRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG 126 (494)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~ 126 (494)
++.++..+++.+..+...+......|.+|.+.+ +++.++.+.++..+.+.+++.+++++.|+++||+|||++++.+.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 85 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVE---DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV 85 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 457788888888888888888888899999885 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hh
Q psy4871 127 PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LS 202 (494)
Q Consensus 127 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~ 202 (494)
++.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.+..++......+|..++|.++.. .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~ 165 (406)
T PRK15402 86 AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP 165 (406)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999998888999999999999999999998887777788888777654 58
Q ss_pred hHHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcC
Q psy4871 203 YMNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMG 280 (494)
Q Consensus 203 w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 280 (494)
||+.|++.+++.++..+.. +..||+++.. ++ +.. .++ ...++++ +++
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------~~~----~~~---------~~~~~~~~~~~ 214 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMPETAGRV---GE---------------KLS----LKE---------LGRDYKLVLKN 214 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc---------------ccc----HHH---------HHHHHHHHHcC
Confidence 9999999888877666544 4567654210 00 000 000 0112233 444
Q ss_pred cchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhH
Q psy4871 281 RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSA 358 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 358 (494)
+..+... +...+... .......+.|.++.+ .+.+. +.+.......++.+++.++.+++.||+++|+.+..+..
T Consensus 215 ~~~~~~~-~~~~~~~~----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~ 289 (406)
T PRK15402 215 RRFVAGA-LALGLVSL----PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLW 289 (406)
T ss_pred cHHHHHH-HHHHHHHH----HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4333211 11111111 122334455666543 45443 34444455666788899999999999999999888877
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHH
Q psy4871 359 GCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLIS 438 (494)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~ 438 (494)
+.+++..++....... ..+.+..++..++++.+.+.... ........ .+++.+|+..++.+....++..++
T Consensus 290 ~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g 360 (406)
T PRK15402 290 PMVAGLLLAALATVIS-------SHAYLWLTAGLSLYAFGIGLANA-GLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVG 360 (406)
T ss_pred HHHHHHHHHHHHHHcc-------cccHHHHHHHHHHHHHHHHHHhh-hHHHHHhh-hccccccHHHHHHHHHHHHHHHHH
Confidence 7777766665542111 12333344555556665554332 22233333 344789999999999999999999
Q ss_pred HHhhhchhhh
Q psy4871 439 YKLFFLMDKH 448 (494)
Q Consensus 439 ~~i~~~l~~~ 448 (494)
+.+.+.+.+.
T Consensus 361 ~~~~~~l~~~ 370 (406)
T PRK15402 361 IELSKHAYLG 370 (406)
T ss_pred HHHHHhcccC
Confidence 9999999873
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=242.63 Aligned_cols=356 Identities=13% Similarity=0.070 Sum_probs=245.4
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
.++.++++++.++++..+...+..+++.+++ .+|++++..|++.+.+.+.+.+++|+.|+++|||.||+++.+|..+
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~---~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQT---YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhHHHHH---hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 5667778888899999999998899999995 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-----hh
Q psy4871 129 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SY 203 (494)
Q Consensus 129 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w 203 (494)
+.++.++++++..||+++++|.+.|+|.+...|+++++++|.+|..+|++.+++++.+..+|..+|.+.+... .|
T Consensus 108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887663 59
Q ss_pred HHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHccc-ccccccchhh----
Q psy4871 204 MNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTS-KNVERTNFRE---- 277 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---- 277 (494)
||.|.+.+++.+++.++. ++.+|.++ +..++. +.+.+ ..+....++|
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~----------------------~~~~~~~~~~ts~~kDl~~l 240 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEV----------------------DGENKMVKPFTSVWKDLKVL 240 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCccc-----cccccc----------------------ccCCcCCCCccchHHHHHHH
Confidence 999999999999888776 55565431 100000 00000 0111112222
Q ss_pred hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHH----HhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCch--
Q psy4871 278 FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIF----ASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRR-- 350 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-- 350 (494)
.+.+.+....+-.....+. ...+..|.|.+. .-.+++. ...++..+...++.+|.+++|.++||+.|+
T Consensus 241 ~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~ 315 (493)
T KOG1330|consen 241 AKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFP 315 (493)
T ss_pred HccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcc
Confidence 1222222222222222221 223333444333 3334343 556777888899999999999999995321
Q ss_pred --hHHHHhhHHHHH----HHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHH
Q psy4871 351 --VLFLVSSAGCSL----FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSC 424 (494)
Q Consensus 351 --~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~ 424 (494)
......-+.++. +..++...... ........+.+++++........+....+..|++|++.|.++.
T Consensus 316 ~~~~~~~~q~~~~~g~~~s~~~L~~~~~~--------~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~ 387 (493)
T KOG1330|consen 316 NSGTLRASQLSAALGAPLSIPFLFLFPAF--------TSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAY 387 (493)
T ss_pred cccchhHHHHHHhhhhhHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHH
Confidence 111111111111 11111111111 1122222223333333322222223336788999999999999
Q ss_pred HHHHHHHHHHHHHH-HHhhhchhh
Q psy4871 425 AVINILCTTLGLIS-YKLFFLMDK 447 (494)
Q Consensus 425 g~~~~~~~~~~~i~-~~i~~~l~~ 447 (494)
++...+..+.+-.+ |++.|.+.|
T Consensus 388 a~~~~~~h~fgd~~~p~ivGilsd 411 (493)
T KOG1330|consen 388 ALDTVFEHIFGDAASPYIVGILSD 411 (493)
T ss_pred HHHHHHHHHhccCCCcceehhHHH
Confidence 99988877755554 559999988
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=248.72 Aligned_cols=359 Identities=13% Similarity=0.093 Sum_probs=240.4
Q ss_pred HHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh
Q psy4871 61 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR 140 (494)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~ 140 (494)
+...++....+...|.+.+ ++++++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.+++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred hHHHHhHHhhhhhhHHHHH---HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 4445566667778888885 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHH-Hhhhh----hhhHHHHHHHHHHHH
Q psy4871 141 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY-VLGSE----LSYMNYLTYSLIIPI 215 (494)
Q Consensus 141 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~-~~~~~----~~w~~~f~~~~~~~~ 215 (494)
+++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++ +++.. .+||+.|++.+++.+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI 161 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888 34432 589999998888776
Q ss_pred HHHHH-hhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHH
Q psy4871 216 IFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFL 293 (494)
Q Consensus 216 ~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 293 (494)
+..+. .++.||+|+....+...++ ..++.+. .+.+++.+....+...++ ++++..+. ..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 223 (379)
T TIGR00881 162 IVSLICFLLLRDSPQSCGLPPAEEM-----------PNEEPDG--DAEKKEEELTKKQIFLQYVLLNKVLWY-----ISL 223 (379)
T ss_pred HHHHHHheeeCCCccccccCccccC-----------ccccccc--ccccccccccchHHHHHHHHhcchHHH-----HHH
Confidence 65544 4566776532110000000 0000000 000000000111112233 34433321 111
Q ss_pred HHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCc-hhHHHHhhHHHHHHHHHHHHH
Q psy4871 294 AVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGR-RVLFLVSSAGCSLFSFIAGLY 370 (494)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~ 370 (494)
..+...........|.|.++.+ .+.+. +.+.......++.+++.++.+++.||..+ |+... ...........+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~-~~~~~~~~~~~~~~~ 302 (379)
T TIGR00881 224 GYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL-AVFFMALIIVSLLVY 302 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH-HHHHHHHHHHHHHHH
Confidence 1222222244566677887765 46553 56677777888899999999999998643 33222 211111111111111
Q ss_pred HHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhc
Q psy4871 371 YYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI 449 (494)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~ 449 (494)
.... ..+.+...+..++.+.+ ..+..+....+..|.+|++.|+++.|+.+....+++.++|.+.|.+.+..
T Consensus 303 ~~~~-------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 373 (379)
T TIGR00881 303 WLNP-------AANPLMDLICLFALGFL-VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF 373 (379)
T ss_pred hcCc-------chhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence 1100 11222222333333332 22333344567899999999999999999999999999999999998743
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=248.44 Aligned_cols=368 Identities=11% Similarity=0.042 Sum_probs=245.5
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhc-------------------CCCCCCCCCCchhHHHHHHHHhHhhhhhc
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLS-------------------KESPIPMSPNEGSWVVAIIEIGNYLSPIP 108 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~s~~~~g~~~s~~~~~~~i~~~~ 108 (494)
.+|.+..++.++......+....+...+.+.+ .+.+++++..+.|++.+.+.+++.+++++
T Consensus 16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~ 95 (465)
T TIGR00894 16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIP 95 (465)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcc
Confidence 36666666666666655555555554444431 01167899999999999999999999999
Q ss_pred hHhhhhhhCchhHHHhhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHH
Q psy4871 109 AGMLVNRIGRKWSLLMTGPITTASWIIAMYS--RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQIS 186 (494)
Q Consensus 109 ~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 186 (494)
.|+++||+|||+++..+.++.+++.+++.++ .+++.+++.|+++|++.+...+....++.||+|+++|++++++...+
T Consensus 96 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 175 (465)
T TIGR00894 96 VGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG 175 (465)
T ss_pred hHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887654 56888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh----h-hhHHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHH
Q psy4871 187 CHLGILYTYVLGSE----L-SYMNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQ 260 (494)
Q Consensus 187 ~~~G~~~~~~~~~~----~-~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (494)
..+|.++++.++.. . +||+.|++.++++++..+.+ .+.+|+|+.. .+.++.+ .+..+
T Consensus 176 ~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~--------------~~~i~ 238 (465)
T TIGR00894 176 FQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCISKFE--------------KKYIN 238 (465)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCCCHHH--------------HHHHH
Confidence 99999998888755 2 89999999999887776655 4456666321 0000000 00000
Q ss_pred HH-HHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHh
Q psy4871 261 II-KQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVS 336 (494)
Q Consensus 261 ~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 336 (494)
+. +++.++.+.+.++++ ++++..+ ...+..+....+.+.+..|+|.++++ .+.+. ..+....+..++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~ 313 (465)
T TIGR00894 239 SSLQGQKGSTRQSLPIKAIPKSLPVW-----AIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLC 313 (465)
T ss_pred hhcccccCCCCCCCCHHHHhcCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHH
Confidence 00 000001112334666 5544332 23333333334466778899998866 45554 5667777788899999
Q ss_pred hhhhhhhhcccCchhHH--------HHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchh
Q psy4871 337 IFPSTYYIDRAGRRVLF--------LVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFT 408 (494)
Q Consensus 337 ~~~~g~l~d~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (494)
.+++|++.||+++|+.. ..+......+..++... .. ..+.+..++.+.+.+.+.+. ..+..+
T Consensus 314 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~l~~~~~~~-~~~~~~ 383 (465)
T TIGR00894 314 SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP--YL-------SAAFYLTIIILTLANAVSSG-PLAGVL 383 (465)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--Hc-------CCchHHHHHHHHHHHHHhhh-hhhhhh
Confidence 99999999987644211 11111111111111111 10 11222233333333333222 223333
Q ss_pred hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 409 PLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 409 ~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
....|..|. .+|.+.|+.+..+.++++++|.+.|.+.+.
T Consensus 384 ~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 384 INSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQ 422 (465)
T ss_pred hchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence 455566665 799999999999999999999999998763
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=235.87 Aligned_cols=336 Identities=16% Similarity=0.136 Sum_probs=242.2
Q ss_pred HHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh
Q psy4871 61 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR 140 (494)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~ 140 (494)
+..........|.+|.+.+ ++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 91 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAA---DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN 91 (385)
T ss_pred HHHHHHHHHhcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 4445666777888999985 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHH
Q psy4871 141 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPII 216 (494)
Q Consensus 141 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~ 216 (494)
+++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.++.. .+||+.|++.+++.++
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 171 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGIL 171 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888887765 4899999988887776
Q ss_pred HHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHH
Q psy4871 217 FTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLA 294 (494)
Q Consensus 217 ~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 294 (494)
..+.. ++.||+++.. + +.+.. .....+++ ++++..+...+ ...+.
T Consensus 172 ~~~~~~~~~~~~~~~~----~---------------~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~~~~ 218 (385)
T TIGR00710 172 LSALIFFILPETLPYE----A---------------RIQIS-------------TYFETFLLLLKSKMFWGYAL-IYGAS 218 (385)
T ss_pred HHHHHHHhCCCCCCCc----c---------------cCCHH-------------HHHHHHHHHHcCchhHHHHH-HHHHH
Confidence 65544 5567654210 0 00000 00112233 33443332211 11111
Q ss_pred HHHHccchHhHHHhHHHHHH-hcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHH
Q psy4871 295 VFRAFTGVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYY 372 (494)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (494)
.........+.|.++. ..+.+. +.+.......++.+++.++.+++.||+++|+.+..+..+..++.+++.....
T Consensus 219 ----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (385)
T TIGR00710 219 ----FGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI 294 (385)
T ss_pred ----HHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123445556676665 455553 4556667788888999999999999999999888887777766655544321
Q ss_pred hhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhch
Q psy4871 373 VTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLM 445 (494)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 445 (494)
.. ............+.+.+.+... +.......|..| +.++++.++.+...+.++.+.+.+.+.+
T Consensus 295 ~~-------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 295 LG-------LGSWAMIIGPMMFVGIGNSMIS-SIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred hc-------cchHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 0112222333444444444433 344466778777 4689999999999888777777777644
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=245.16 Aligned_cols=371 Identities=13% Similarity=0.097 Sum_probs=240.1
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
++..+....+................|.++ +.|+++++.+++.+++.++..+++++.|+++||+|||++++.+.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~ 100 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLV----EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHH----HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHH
Confidence 455555555566666666666666778777 4599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----
Q psy4871 129 TTASWIIAMYS----RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE---- 200 (494)
Q Consensus 129 ~~i~~~~~~~a----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~---- 200 (494)
.+++.+++++. ++++.+.+.|++.|++.+..++....++.|++|+++|++++++.+.+..+|..+++.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~ 180 (438)
T TIGR00712 101 SAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW 180 (438)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99998887764 4677888999999999999989889999999999999999999999999988887755432
Q ss_pred -hhhHHHHHHHHHHHHHHH-HHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchh-h
Q psy4871 201 -LSYMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFR-E 277 (494)
Q Consensus 201 -~~w~~~f~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 277 (494)
.+||+.|++.++++++.. +..+++||+|+....+. .++. ++....+.. ++...+...+..+. .
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~------~~~~~~~~~~~~~~~~ 246 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP-IEEY-------RNDYPDDYN------EKAEQELTAKEIFMQY 246 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC-chhc-------ccccccccc------cccccccchHHHHHHH
Confidence 489999999888877765 44466788774321000 0000 000000000 00000000011111 2
Q ss_pred -hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc-CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHH
Q psy4871 278 -FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL 354 (494)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 354 (494)
++++..+. ..+..+......+....|.|.++++. |.+. ..+....+..+.++++.++++++.||+++++...
T Consensus 247 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 321 (438)
T TIGR00712 247 VLPNKLLWY-----IAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA 321 (438)
T ss_pred HccCchHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH
Confidence 33333332 11111122222456677889998764 5554 4566677788889999999999999996443222
Q ss_pred HhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHH
Q psy4871 355 VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTL 434 (494)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 434 (494)
.+.....+..+......... ..+.+......+..+.+. .+..........|.+|++.|+++.|+.+...+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 393 (438)
T TIGR00712 322 TGVFFMTLVTIAVIVYWMNP-------AGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 393 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhh
Confidence 23222222211111111100 112222222222222221 1111121245679999999999999999998887
Q ss_pred H-HHHHHhhhchhhhcC
Q psy4871 435 G-LISYKLFFLMDKHIG 450 (494)
Q Consensus 435 ~-~i~~~i~~~l~~~~~ 450 (494)
+ +++|.+.|.+.+..|
T Consensus 394 g~~~gp~l~G~l~~~~g 410 (438)
T TIGR00712 394 GSVAASAIVGYTVDFFG 410 (438)
T ss_pred hhhhcchhHHHHHHhcc
Confidence 5 689999999988555
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=242.15 Aligned_cols=376 Identities=14% Similarity=0.087 Sum_probs=258.8
Q ss_pred HHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHH
Q psy4871 53 EAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTAS 132 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 132 (494)
+++++++.++..++.....+.+|.+.+ ++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQ---SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 344556677778888888889999995 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHH
Q psy4871 133 WIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLT 208 (494)
Q Consensus 133 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~ 208 (494)
.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|..++|.+++. .+||+.|+
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~ 168 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL 168 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999889999888888765 58999999
Q ss_pred HHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHH--------H-HhcCChh-hHHHHHH------------HHHHc
Q psy4871 209 YSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLK--------W-LRNKTAD-QVQSELQ------------IIKQN 265 (494)
Q Consensus 209 ~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~--------~-~~~~~~~-~~~~~~~------------~~~~~ 265 (494)
+......+..+.. ...|+.+. .+.+.+....... . ..+.+.. ....... ...++
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (471)
T PRK10504 169 INIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHA 245 (471)
T ss_pred HHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9887776665544 44454331 1111111110000 0 0000000 0000000 00000
Q ss_pred ccccccccchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhh
Q psy4871 266 TSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYY 343 (494)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l 343 (494)
.+..++..+.+-++++.++. .+...++ ...+......+.|++++. .|.+. ..+.......++.+++.++.+++
T Consensus 246 ~~~~~~~~~~~l~~~~~~~~-~l~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 320 (471)
T PRK10504 246 RNNNRALFSLKLFRTRTFSL-GLAGSFA----GRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQV 320 (471)
T ss_pred hcCCCCccCHHHhcccchHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111221144443332 2211111 112234455667777764 45543 45566666777777888999999
Q ss_pred hcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHH
Q psy4871 344 IDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVS 423 (494)
Q Consensus 344 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~ 423 (494)
.||+|+|+++..+..+.++...++.+.. . ....+......++.+.+.+....+ ...+..+..|++.++.+
T Consensus 321 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~g~~ 390 (471)
T PRK10504 321 VNRFGYRRVLVATTLGLALVSLLFMLVA--L-------LGWYYLLPFVLFLQGMVNSTRFSS-MNTLTLKDLPDNLASSG 390 (471)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHhcc--c-------cccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCHHhccch
Confidence 9999999999888887777666554421 0 111222223334444554444433 33777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhc
Q psy4871 424 CAVINILCTTLGLISYKLFFLMDKHI 449 (494)
Q Consensus 424 ~g~~~~~~~~~~~i~~~i~~~l~~~~ 449 (494)
.|+.++...+|..+++.+.|.+.+..
T Consensus 391 ~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 391 NSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998833
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=229.89 Aligned_cols=337 Identities=14% Similarity=0.054 Sum_probs=241.5
Q ss_pred HHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHH
Q psy4871 53 EAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTAS 132 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 132 (494)
++.+.++.++.+...+...+.+|.+.+ ++|.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~---~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~ 84 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLA---QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG 84 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677788888999999999995 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhhh---hHHHHHH
Q psy4871 133 WIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELS---YMNYLTY 209 (494)
Q Consensus 133 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~---w~~~f~~ 209 (494)
+++++++++++.++++|+++|++.+...+.....+.+..++++|++++++...+..+|..+++.++..+. ++...+.
T Consensus 85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 164 (381)
T PRK03633 85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV 164 (381)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 9999999999999999999999999998888888888899999999999999999999999999987642 1222222
Q ss_pred HHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHH
Q psy4871 210 SLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAF 287 (494)
Q Consensus 210 ~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 287 (494)
.+.......... ...++++ .+ +++..++++ ++++..+. .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~----------------------~~----------------~~~~~~~~~~~~~~~~~~-~ 205 (381)
T PRK03633 165 TGLVLAAILPLLFTRILNQQ----------------------AE----------------NHDSTSIWPMLKLRQARL-G 205 (381)
T ss_pred HHHHHHHHHHHHHhcccCCC----------------------CC----------------CCCCCCHHHHHHhcchHH-H
Confidence 222222111111 1122110 00 000112233 44443331 1
Q ss_pred HHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHH
Q psy4871 288 VFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 366 (494)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 366 (494)
......... .......+.|.++++.|.+. ..+.......++.+++.+..+++.||+++|+.+..+..+..++.+.
T Consensus 206 ~~~~~~~~~----~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 281 (381)
T PRK03633 206 VNGCIISGI----VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIA 281 (381)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 111111111 12344567788888777654 4556666777888999999999999999999888777776665543
Q ss_pred HHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 367 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
+.. . ........+++.+.. ...|...+...|..|++.++...+..+...++|.+++|.+.|++.
T Consensus 282 ~~~----~-----------~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~ 345 (381)
T PRK03633 282 MLS----Q-----------AAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM 345 (381)
T ss_pred Hhh----h-----------HHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 0 011222333333322 334566677888898888888888888889999999999999999
Q ss_pred hhcCC
Q psy4871 447 KHIGK 451 (494)
Q Consensus 447 ~~~~~ 451 (494)
|..+.
T Consensus 346 ~~~g~ 350 (381)
T PRK03633 346 QNYSD 350 (381)
T ss_pred HHhCc
Confidence 85553
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-28 Score=233.13 Aligned_cols=335 Identities=13% Similarity=0.079 Sum_probs=239.5
Q ss_pred HHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh
Q psy4871 61 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR 140 (494)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~ 140 (494)
.+..+......|.+|.+.+ +++.++++.+++.+++.+++.++++++|+++||+|||++++.+.++.+++.+++.+++
T Consensus 16 ~~~~~~~~~~~p~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 16 MLGFLATDMYLPAFKAIQA---DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHHHHHhhHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3334556677788888885 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHH
Q psy4871 141 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPII 216 (494)
Q Consensus 141 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~ 216 (494)
+++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.++.. .+||+.|++.+++.++
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL 172 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 999999999999999888888888999999999989888888877777777777777655 5999999998888877
Q ss_pred HHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHH
Q psy4871 217 FTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAV 295 (494)
Q Consensus 217 ~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 295 (494)
..+..++++|+++. +++ ++++.++++ ++++..+...+..... .
T Consensus 173 ~~~~~~~~~~~~~~---------------------~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 216 (401)
T PRK11043 173 LILPTLRLKPSKKA---------------------RKQ--------------SQDALTFKQLLKSKTYLGNVLIFAAC-S 216 (401)
T ss_pred HHHHHHHcCCCCCc---------------------ccc--------------chHHHHHHHHHcChhHHHHHHHHHHH-H
Confidence 76666556654310 000 000112333 4444333222211111 1
Q ss_pred HHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhh
Q psy4871 296 FRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVT 374 (494)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (494)
........+.|.++++.|.+. ..+.......++.+++.++.+++.||+++|+.........+++.+.+.......
T Consensus 217 ----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (401)
T PRK11043 217 ----AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS 292 (401)
T ss_pred ----HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 113345566788877777654 345555566778888999999999999998877666555555444333222111
Q ss_pred hccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 375 IELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
....+...+...+.+.+.+.. .+.......+..| +.++++.|+.++.+..++.+++.+.|.+.+
T Consensus 293 -------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 293 -------HPSLVPLLIPFCVMAAANGAI-YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred -------cCcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 122333333344445554443 3444455566666 469999999999999999999999998876
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-28 Score=234.66 Aligned_cols=347 Identities=12% Similarity=0.119 Sum_probs=241.9
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
.+..++...+..+..++......+..|.+++ ++++++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~---~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~ 100 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3444556666777778888888899999985 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-----
Q psy4871 129 TTASWIIA---MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----- 200 (494)
Q Consensus 129 ~~i~~~~~---~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----- 200 (494)
++++++++ .++++++.++++|+++|+|.|...+....++.|+.++++|.+.+++.+..+.+|..+++.++..
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~ 180 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999886 4678999999999999999999999999999998777777777888888888888888876531
Q ss_pred -------------------------hhhHHHHHHHH-HHHHHHHHH-hhccCcchhHHHhhCChHHHHHHHHHHhcCChh
Q psy4871 201 -------------------------LSYMNYLTYSL-IIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTAD 253 (494)
Q Consensus 201 -------------------------~~w~~~f~~~~-~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~ 253 (494)
.+||++|+... +..++..+. ...+||.+. ++
T Consensus 181 ~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----------------------~~ 238 (438)
T PRK10133 181 VPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----------------------DN 238 (438)
T ss_pred CcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----------------------cc
Confidence 24566665433 333232222 233444220 00
Q ss_pred hHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHH-Hh-cCCCc-chhHHHHHH
Q psy4871 254 QVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIF-AS-SETFL-PSDYISILF 329 (494)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~ 329 (494)
.. +.+......+.++ ++++.++... +..+... ........|.+.++ ++ .|.+. ..+......
T Consensus 239 ~~---------~~~~~~~~~~~~~ll~~~~~~~~~-l~~~~~~----~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~ 304 (438)
T PRK10133 239 HS---------DAKQGSFSASLSRLARIRHWRWAV-LAQFCYV----GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGT 304 (438)
T ss_pred cc---------cccccchhhhHHHHHhCchHHHHH-HHHHHHH----HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Confidence 00 0000000112233 4454443222 1111111 22334455666664 33 35554 566777888
Q ss_pred HHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhh
Q psy4871 330 AIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 409 (494)
Q Consensus 330 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (494)
.++.++++++++++.||+++|+++..+..+.++.+++..+. ... ..+..+.+++++.+..+ |..++
T Consensus 305 ~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~l~glg~~~i~-P~~~s 370 (438)
T PRK10133 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------GGH-VGLIALTLCSAFMSIQY-PTIFS 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------------CCh-HHHHHHHHHHHHHHHHH-HHHHH
Confidence 89999999999999999999998887766665554443321 111 22445556666666544 55668
Q ss_pred hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhcC
Q psy4871 410 LLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 410 ~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~ 450 (494)
...+..|++ .+++.++.. ...+++.++|.+.|.+.+..|
T Consensus 371 ~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 371 LGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred HHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence 888887764 677888776 466789999999999987554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=219.78 Aligned_cols=339 Identities=17% Similarity=0.168 Sum_probs=257.8
Q ss_pred HHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh
Q psy4871 61 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR 140 (494)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~ 140 (494)
....+.....+++.+.+.+ ++++|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..+-++..+++.
T Consensus 24 ~v~F~VW~l~s~l~~~i~~---~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~ 100 (417)
T COG2223 24 DVGFMVWTLFSPLGVFIKS---DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV 100 (417)
T ss_pred HHHHHHHHHHHHHHhhhcc---ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc
Confidence 3333445556777777775 9999999999999999999999999999999999999999999999999999999986
Q ss_pred hH---HHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHh----hhhhh---hHHHHHHH
Q psy4871 141 SV---LGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVL----GSELS---YMNYLTYS 210 (494)
Q Consensus 141 ~~---~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~----~~~~~---w~~~f~~~ 210 (494)
+. +++++++++.|++ |..+.+...++++|+||+++|.++++.. ..++|..+..++ ....+ |+....+.
T Consensus 101 ~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~ 178 (417)
T COG2223 101 TYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIY 178 (417)
T ss_pred cCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55 4999999999998 6777999999999999999999999998 777777665444 44457 99988888
Q ss_pred HHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccc-cchhh-hcCcchHHHH
Q psy4871 211 LIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVER-TNFRE-FMGRSNMKAF 287 (494)
Q Consensus 211 ~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ 287 (494)
.+..++..+.. +.+.+.|...... ++.. ..++. .+++..|
T Consensus 179 ~~~l~v~~v~~~~~~~d~p~~r~~~----------------------------------~~~~~~~~~~v~~~~~~W--- 221 (417)
T COG2223 179 VVALAIAAVLAWLGMNDVPEHRASV----------------------------------KPQLPAQLKAVFSNKDTW--- 221 (417)
T ss_pred HHHHHHHHHHHHHHhCCChhhhccc----------------------------------cccchhHHHHHhcCcchH---
Confidence 88877766544 5565554210000 0000 12333 3343333
Q ss_pred HHHHHHHHHHHccchHhHHHhHHHHHHhc-CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHH
Q psy4871 288 VFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSF 365 (494)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 365 (494)
.+.+.++.++.++..+..++|.++++. +.+. +++.......+.+.+.++.+|+++||+|.++.+...+..++++..
T Consensus 222 --~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~ 299 (417)
T COG2223 222 --LLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA 299 (417)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence 444555556667888999999998764 4443 566778888888999999999999999999999999999888888
Q ss_pred HHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhch
Q psy4871 366 IAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLM 445 (494)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 445 (494)
++....... +...+.+..+..++....+.+.+-..+ +.+++.++|.+ .|...|+..+.+.+|++.-|..++..
T Consensus 300 ~l~~~~~~~-----~~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~ 372 (417)
T COG2223 300 LLSLFLTGF-----GHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVS 372 (417)
T ss_pred HHHcccccc-----ccCcchHHHHHHHHHHHHHhccCcchh-eeechHHHHhh-hhHHHHHHHHhccccccchhHHHHHH
Confidence 776642111 111334444444555556666665544 48888888874 79999999999999999999999999
Q ss_pred hhhcC
Q psy4871 446 DKHIG 450 (494)
Q Consensus 446 ~~~~~ 450 (494)
.+..|
T Consensus 373 ~~~tg 377 (417)
T COG2223 373 LDLTG 377 (417)
T ss_pred HHhcc
Confidence 99666
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=236.86 Aligned_cols=344 Identities=18% Similarity=0.180 Sum_probs=231.8
Q ss_pred hhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHH-----HHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH
Q psy4871 63 TGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAI-----IEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM 137 (494)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 137 (494)
+.++....+...+.+.++ ...+.++.+.+.+.+. ..++..+++++.|+++||+|||++++.+.++..++.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 5 EWFDFYLYGFAAVLVFHT-FFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 344454455555555531 1233556667665543 3334457899999999999999999999999999999999
Q ss_pred HHhhHH--------HHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhh----------
Q psy4871 138 YSRSVL--------GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGS---------- 199 (494)
Q Consensus 138 ~a~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~---------- 199 (494)
++++++ .+++.|+++|++.+...+....++.|++|+++|++..++...+..+|.++++.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~ 163 (394)
T TIGR00883 84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA 163 (394)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 998875 48899999999999999999999999999999999999999999999998887653
Q ss_pred --hhhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh
Q psy4871 200 --ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE 277 (494)
Q Consensus 200 --~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (494)
..+||+.|.+.+++.++..+....+||+|++...+++ ++..+.++++
T Consensus 164 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~ 212 (394)
T TIGR00883 164 LLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-------------------------------HKKKRGPIRE 212 (394)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-------------------------------cccccCCHHH
Confidence 2489999998887776665555666776532111000 0111223333
Q ss_pred -hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHH
Q psy4871 278 -FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL 354 (494)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 354 (494)
++++. ++........ +...........+.|.++++ .+.+. ..+....+..+..+++.++.+++.||+|||+.+.
T Consensus 213 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (394)
T TIGR00883 213 TLTKHR--KPFLLGLGLV-IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI 289 (394)
T ss_pred HHHhch--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 33322 1122222222 22222345566778888744 45543 4556667778888999999999999999998776
Q ss_pred HhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHH-HHHHHH
Q psy4871 355 VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVI-NILCTT 433 (494)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~ 433 (494)
....+..+....+.... .. ..+.+......++.+.+.+... +...+++.|.+|++.|+++.++. +....+
T Consensus 290 ~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 360 (394)
T TIGR00883 290 IFTVLAALLAVPLLMAL-LD-------SGSFTLFFFLVLGLALIGGMYT-GPMGSFLPELFPTEVRYTGASLAYNLAGAI 360 (394)
T ss_pred HHHHHHHHHHHHHHHHH-hc-------CCchHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCCccceeeEeeehhHhHHHH
Confidence 55544443332111111 11 1233333444455555544433 44558899999999999999985 455667
Q ss_pred HHHHHHHhhhchhhhcC
Q psy4871 434 LGLISYKLFFLMDKHIG 450 (494)
Q Consensus 434 ~~~i~~~i~~~l~~~~~ 450 (494)
+..++|.+.|.+.+..+
T Consensus 361 g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 361 FGGFAPYIAAALVAMTG 377 (394)
T ss_pred HhhHHHHHHHHHHHHcC
Confidence 88899999999987544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=230.30 Aligned_cols=339 Identities=16% Similarity=0.236 Sum_probs=251.3
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhHhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SVLGLYVMRTLQGFSMAAIY 160 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~ 160 (494)
++++++.+.+++.+.++.|+++++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|+++|++.|..+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence 7889999999999999999999999999999999999999999999999999999875 45678999999999999999
Q ss_pred hhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHh-hccCcchhHHHhh
Q psy4871 161 VISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSYMNYLTYSLIIPIIFTVTF-MFMPESPYFYAIK 234 (494)
Q Consensus 161 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~ 234 (494)
|+...+...|.|++||++..++...+..+|.+++..+++. +||+.+|++.++++++..+++ ++..|+|..
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---- 222 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---- 222 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc----
Confidence 9999999999999999999999999999998887766654 699999999999999998887 555667631
Q ss_pred CChHHHHHHHHHHhcCChhhHHHHHHHHHHcccc----cccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhH
Q psy4871 235 NQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK----NVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYA 309 (494)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (494)
++.-.++|.+.+++...+ ++.+.|+++ ++++..| ...+..+....+.+.+..|.
T Consensus 223 ----------------h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vw-----ai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 223 ----------------HPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVW-----AIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred ----------------CCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 111122333333333222 114668888 7765443 55555556666688999999
Q ss_pred HHHHHhc-CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCch---------hHHHHhhHHHHHHHHHHHHHHHhhhccc
Q psy4871 310 NTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRR---------VLFLVSSAGCSLFSFIAGLYYYVTIELQ 378 (494)
Q Consensus 310 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (494)
|.|+++. +++. +.++..++..+...+..+++|.++||+.+| ..-.++....+++++.+++..
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~------- 354 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS------- 354 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC-------
Confidence 9999874 5664 788899999999999999999999988552 223334444444444444431
Q ss_pred cCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhcCCCHHHHHH
Q psy4871 379 YEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGKTFNEIQY 458 (494)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~ 458 (494)
..+.+..++++.+.....+. ..+-.+....+. .+++.+..+|+.+....+.++++|.+.+.+.. .+ +.+|.+.
T Consensus 355 ---~~~~~~a~~~l~~~~~~~g~-~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~-t~~eW~~ 427 (466)
T KOG2532|consen 355 ---DEHRLLAVILLTIAIGLSGF-NISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN-TREEWRI 427 (466)
T ss_pred ---CCcchHHHHHHHHHHHHccc-chhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC-CHHHHHH
Confidence 12222333333332222222 222221222232 55678999999999999999999999999985 32 7777665
Q ss_pred HH
Q psy4871 459 MF 460 (494)
Q Consensus 459 ~~ 460 (494)
.|
T Consensus 428 VF 429 (466)
T KOG2532|consen 428 VF 429 (466)
T ss_pred HH
Confidence 54
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=231.87 Aligned_cols=339 Identities=13% Similarity=0.066 Sum_probs=247.5
Q ss_pred HHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHH
Q psy4871 53 EAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTAS 132 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 132 (494)
.++++...+..|+..+...+.+|.+++ ++++++.+.|++.+.+.+++.+++++.|++.||+|||++++.+.++++++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~---~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQ---AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 445667778888888999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh--------
Q psy4871 133 WIIAMY---SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-------- 201 (494)
Q Consensus 133 ~~~~~~---a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-------- 201 (494)
.+++.. .++++.+++.|++.|+|.|...+....++.++.|+++|++..++.+...++|..+++.++..+
T Consensus 82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~ 161 (410)
T TIGR00885 82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQ 161 (410)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 988654 358999999999999999999999999999999999999999999999999999888876532
Q ss_pred ----------------------hhHHHHHHHHHHHHHHHHHhhc--cCcchhHHHhhCChHHHHHHHHHHhcCChhhHHH
Q psy4871 202 ----------------------SYMNYLTYSLIIPIIFTVTFMF--MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQS 257 (494)
Q Consensus 202 ----------------------~w~~~f~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (494)
+||++|.+.+++.++..+...+ .||.++ +++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~----------------------~~~--- 216 (410)
T TIGR00885 162 SQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH----------------------SDA--- 216 (410)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----------------------ccc---
Confidence 4999999888877665544432 343110 000
Q ss_pred HHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCcc---hhHHHHHHHHHH
Q psy4871 258 ELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLP---SDYISILFAIIL 333 (494)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 333 (494)
++...+.+.++ ++++..+. ..+..++... .......|.+.+..+.+.+.+ +...........
T Consensus 217 ---------~~~~~~~~~~~~~~~~~~~~-~~l~~f~yvg----~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~ 282 (410)
T TIGR00885 217 ---------KQISFSASLSRLARIRHYRE-GVIAQFFYVG----VQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIF 282 (410)
T ss_pred ---------ccccchhhHHHHHhChhHHH-HHHHHHHHHH----HHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Confidence 00000112223 33443332 2222222222 233455677777765432222 223344455677
Q ss_pred HHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcc
Q psy4871 334 LVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSE 413 (494)
Q Consensus 334 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (494)
.+|+++++++.||+++|+.+.++..+.+++.++.... +.......+.+.+++.+..+ |..++...+
T Consensus 283 ~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-------------~~~~~~~~l~~~glf~s~~f-p~i~sl~~~ 348 (410)
T TIGR00885 283 FISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-------------GGHVGLYCLTLCSAFMSLMF-PTIYGIALK 348 (410)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-------------CChHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 8999999999999999998888877777766665542 12233455566666666655 677789999
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhc
Q psy4871 414 YFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI 449 (494)
Q Consensus 414 ~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~ 449 (494)
..+++.+..+.++.... +|+++.|++.|.+.|..
T Consensus 349 ~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 349 GLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred hhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 99887655555555544 99999999999999843
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=228.69 Aligned_cols=347 Identities=13% Similarity=0.083 Sum_probs=233.7
Q ss_pred HHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHH
Q psy4871 53 EAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTAS 132 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 132 (494)
...+.+..+...+......|.+|.+.+ +++.+.++.++..+++.+++.++++++|+++||+|||++++.+.++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 94 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQPGIINVVR---DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA 94 (413)
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence 334455556666778888999999986 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHH
Q psy4871 133 WIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLT 208 (494)
Q Consensus 133 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~ 208 (494)
+++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++|+++.. .+||+.|+
T Consensus 95 ~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~ 174 (413)
T PRK15403 95 CAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA 174 (413)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999887777788899999999999999999999999999888888765 48999999
Q ss_pred HHHHHHHHHHHH-hhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHH
Q psy4871 209 YSLIIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKA 286 (494)
Q Consensus 209 ~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 286 (494)
+.+++.++..+. .+.+||+++. +++ +.+.. .....+++ ++++..+..
T Consensus 175 ~~~~~~~i~~~~~~~~lp~~~~~---~~~---------------~~~~~-------------~~~~~~~~ll~~~~~~~~ 223 (413)
T PRK15403 175 IIAVMGLIAFVGLLLAMPETVKR---GAV---------------PFSAK-------------SVLRDFRNVFRNRLFLTG 223 (413)
T ss_pred HHHHHHHHHHHHHHHhCCCCccc---cCC---------------CCChH-------------HHHHHHHHHHcCHHHHHH
Confidence 998887776654 3567886420 000 00000 00112334 445433321
Q ss_pred HHHHHHHHHHHHccchHhHHHhHHHHHHhc-CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHH
Q psy4871 287 FVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFS 364 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 364 (494)
.+. .+........+..+.|.++++. |.+. +.++.......+.+++..+.+.+.++..+++.......+..++.
T Consensus 224 -~l~----~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~ 298 (413)
T PRK15403 224 -AAT----LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGL 298 (413)
T ss_pred -HHH----HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 111 1112222345555678777765 5543 34455555666777777777776654444343333333333333
Q ss_pred HHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhc
Q psy4871 365 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 444 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~ 444 (494)
+++....... .+..+..++..++++.+.+.... ......- .-....+|++.++.+.....+..+++...++
T Consensus 299 ~l~~~~~~~~-------~~~~~~~~~~~~l~~~G~~~~~p-~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~ 369 (413)
T PRK15403 299 ALLIVGNLLW-------PHVWLWSVLGTSLYAFGIGLIFP-TLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRW 369 (413)
T ss_pred HHHHHHHHHc-------cccHHHHHHHHHHHHHHHHHHhH-HHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211111 11222234455555555554332 2222221 1122247999999999999999999988888
Q ss_pred hhh
Q psy4871 445 MDK 447 (494)
Q Consensus 445 l~~ 447 (494)
+.+
T Consensus 370 ~~~ 372 (413)
T PRK15403 370 LWF 372 (413)
T ss_pred HHH
Confidence 765
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=235.31 Aligned_cols=336 Identities=13% Similarity=0.078 Sum_probs=242.4
Q ss_pred hhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHH----
Q psy4871 63 TGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY---- 138 (494)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---- 138 (494)
..+..+...+.+|.+.+ +++.++.+.|++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.+..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~ 105 (417)
T PRK10489 29 SIFGLGLLGVAVPVQIQ---MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL 105 (417)
T ss_pred HHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence 33344556677788775 77889999999999999999999999999999999999999998888877766543
Q ss_pred -HhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHH
Q psy4871 139 -SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLII 213 (494)
Q Consensus 139 -a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~ 213 (494)
.++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+|+.+++. .+|++.|++.++.
T Consensus 106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~ 185 (417)
T PRK10489 106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAG 185 (417)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 46788999999999999988889899999999999999999999999999999998888765 4899999988888
Q ss_pred HHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHH
Q psy4871 214 PIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAF 292 (494)
Q Consensus 214 ~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 292 (494)
.++..+..+.+|++++.. .+ +++..+ + .+..++. ++++..+. .++...
T Consensus 186 ~~~~~~~~~~l~~~~~~~---~~---------------~~~~~~---~---------~~~~~~~~~~~~~~~~-~~~~~~ 234 (417)
T PRK10489 186 TFITLLPLLRLPALPPPP---QP---------------REHPLR---S---------LLAGFRFLLASPVVGG-IALLGG 234 (417)
T ss_pred HHHHHHHHHhCCCCCCCC---cc---------------cccchH---H---------HHHHHHHHHcChHHHH-HHHHHH
Confidence 777766667777754210 00 000000 0 0011222 33332222 111111
Q ss_pred HHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHH
Q psy4871 293 LAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLY 370 (494)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (494)
...+ ......+.|.+.++ .+.+. ..+......+++.+++.++.+++.||.++++.+..+..+.+++.+++...
T Consensus 235 ~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 309 (417)
T PRK10489 235 LLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM 309 (417)
T ss_pred HHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc
Confidence 1111 23455567888777 56554 45666777888899999999999999777777777776666665544331
Q ss_pred HHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhcC
Q psy4871 371 YYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~ 450 (494)
++.+...+..++++.+.+. ..+...+++.|..|++.||+++|+.+...++|..++|.+.|.+.+..+
T Consensus 310 ------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g 376 (417)
T PRK10489 310 ------------PMWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT 376 (417)
T ss_pred ------------chHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence 2233334444455544433 234445788899999999999999999999999999999999998544
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=225.92 Aligned_cols=317 Identities=21% Similarity=0.267 Sum_probs=260.1
Q ss_pred HHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHH
Q psy4871 56 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWII 135 (494)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 135 (494)
+.+..+..+++.....+..|.+.+ +++.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAE---DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 445566677778888888888885 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHH
Q psy4871 136 AMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSL 211 (494)
Q Consensus 136 ~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~ 211 (494)
..+.++++.+++.|++.|++.+...+...+++.|++|+++|++..++...+..+|..+++.++.. .+||+.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988876 37999999988
Q ss_pred HHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhhhcCcchHHHHHHHH
Q psy4871 212 IIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMA 291 (494)
Q Consensus 212 ~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (494)
++.++..+...+++ | ..+ ..
T Consensus 161 ~~~~~~~~~~~~~~--~-----------------------------------------------------~~~-----~~ 180 (352)
T cd06174 161 ILGLLLALLLLFLL--R-----------------------------------------------------LLL-----LL 180 (352)
T ss_pred HHHHHHHHHHHHHH--H-----------------------------------------------------HHH-----HH
Confidence 88777766554442 0 111 11
Q ss_pred HHHHHHHccchHhHHHhHHHHHHhc-CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchh-HHHHhhHHHHHHHHHHH
Q psy4871 292 FLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRV-LFLVSSAGCSLFSFIAG 368 (494)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~ 368 (494)
.+..+...........+.+.+..+. +.+. +.+.......++.+++.++.+++.||++||+ .+..+..+..++.+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 1122222233556677788887765 5443 5667788888999999999999999999999 88888888888877665
Q ss_pred HHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 369 LYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
.. ++.+...+...+.+.+.+. ..+....+..|..|++.|++..|+.+....++..+++.+.+.+.+.
T Consensus 261 ~~------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~ 327 (352)
T cd06174 261 LA------------PSLALLLVALLLLGFGLGF-AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327 (352)
T ss_pred Hh------------ccHHHHHHHHHHHHHHHhc-cchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 53 2344455566666666554 3456668999999999999999999999999999999999999863
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=229.20 Aligned_cols=334 Identities=13% Similarity=0.083 Sum_probs=221.4
Q ss_pred hhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH---H-HhhHHHH
Q psy4871 70 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM---Y-SRSVLGL 145 (494)
Q Consensus 70 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~-a~~~~~l 145 (494)
..+.++.+.+ +++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++. + .++++.+
T Consensus 32 ~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (402)
T TIGR00897 32 EQGWLSPFLK---ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLI 108 (402)
T ss_pred HHHhHHHHHH---HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHH
Confidence 3344455554 8899999999999999999999999999999999999999999999999877653 2 2578889
Q ss_pred HHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHH-HHHHHhhhh----hhhHHHHHHHHHHHHHHHHH
Q psy4871 146 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGI-LYTYVLGSE----LSYMNYLTYSLIIPIIFTVT 220 (494)
Q Consensus 146 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~ 220 (494)
++.|++.|++.+...+....++.+++|+++|++++++...+.++|. ++++.++.. ++|+..++......++..+.
T Consensus 109 ~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 188 (402)
T TIGR00897 109 LLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVI 188 (402)
T ss_pred HHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888888999999999999999999999986 577777654 47655544443333332222
Q ss_pred h-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHH
Q psy4871 221 F-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRA 298 (494)
Q Consensus 221 ~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 298 (494)
. ++.++.++- .+.+ ++.+ .+ +.+..+++ ++++..+. ..+..+..
T Consensus 189 ~~~~~~~~~~~--~~~~--------------~~~~----~~---------~~~~~~~~~~~~~~~~~-----~~~~~~~~ 234 (402)
T TIGR00897 189 ALFSNKDIFTP--QHMQ--------------TREK----FS---------ELGKAATILFTNPNVLL-----GGMVRIIN 234 (402)
T ss_pred HHhccCCCCCc--cccc--------------CCcc----hh---------hHHHHHHHHHcChhHHH-----HHHHHHHH
Confidence 2 334432110 0000 0000 00 00011233 44443321 11112222
Q ss_pred ccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHH-HhhHHHHHHHHHHHHHHHhhhc
Q psy4871 299 FTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL-VSSAGCSLFSFIAGLYYYVTIE 376 (494)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 376 (494)
..+.+.+..|.|.+.++.|.+. +.+.......++.+++.+..|++.||++||+.+. .+.+..+++.+.+.......
T Consensus 235 ~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-- 312 (402)
T TIGR00897 235 TIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF-- 312 (402)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 2335567778898888877664 4455566778889999999999999999887653 23333333333322221111
Q ss_pred cccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhcC
Q psy4871 377 LQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~ 450 (494)
..+.+...+..++.+.+.+. ..+.. ....|..| +.|+++.|+.+....+++.++|.+.+.+.+..|
T Consensus 313 -----~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g 378 (402)
T TIGR00897 313 -----GHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG 378 (402)
T ss_pred -----CCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11233334444555554443 33433 45566655 579999999999999999999999999987544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=230.54 Aligned_cols=334 Identities=14% Similarity=0.075 Sum_probs=220.5
Q ss_pred HHHhhhcccchhhHHHh-hhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHH
Q psy4871 60 AFTTGMSFAWSAPVLEE-LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY 138 (494)
Q Consensus 60 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~ 138 (494)
.+..........+.+|. +++ ++|+++.+.+++.+++.+++++++++.|+++||+|||++++++.++.+++.+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~ 86 (366)
T TIGR00886 10 FFLSFSVWFAFSPLAVQMIKD---DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86 (366)
T ss_pred HHHHHHHHHHhHHhhhHHHHH---HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 33334444556788885 774 99999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh--------------hhh
Q psy4871 139 SR-SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE--------------LSY 203 (494)
Q Consensus 139 a~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--------------~~w 203 (494)
++ +++.+++.|+++|++.+ ..+....++.|++|+++|+++.++......+|..+++.++.. .+|
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w 165 (366)
T TIGR00886 87 AVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW 165 (366)
T ss_pred HhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 99 99999999999999865 456678999999999999999999886666666555444322 279
Q ss_pred HHHH-HHHHHHHHHHH-HHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcC
Q psy4871 204 MNYL-TYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMG 280 (494)
Q Consensus 204 ~~~f-~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 280 (494)
|+.| ...+++.++.. +...+.+|+|+.. + ++.+... .+ .... .++.......+ +++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~---~~-~~~~------------~~~~~~~~~~~~~~~ 224 (366)
T TIGR00886 166 GWAFVIVPAGILLLPALLIFFVGADTPPGK----P-ATGKLSF---KG-ARWS------------VGTGALGDQLKVFRD 224 (366)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccCCccc----c-cchhccc---cc-cccc------------ccchhHHHHHHHHhc
Confidence 9999 44344444333 3335566665210 0 0000000 00 0000 00000012233 444
Q ss_pred cchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc-CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhH
Q psy4871 281 RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSA 358 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 358 (494)
+..+... +..+...........+.|.++++. +.+. +.+....+..+..++++++.+++.||+|+|+.+..+..
T Consensus 225 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~ 299 (366)
T TIGR00886 225 RHTWILA-----LLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFL 299 (366)
T ss_pred cchhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHH
Confidence 4333211 111222222345666777777653 5554 45566777888889999999999999999887777766
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCc-cchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHH
Q psy4871 359 GCSLFSFIAGLYYYVTIELQYEIPY-TSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTL 434 (494)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 434 (494)
....+..++.+... .. +.+.......+...+.+.+.. ..+++.++..| +.+|++.|+.+..+++|
T Consensus 300 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 300 GVAMGAFLVVLGLV---------SPLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHhcCC---------CcchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 66555554443210 11 223333344444445454443 44577888887 57999999999888765
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=225.53 Aligned_cols=335 Identities=12% Similarity=0.070 Sum_probs=229.3
Q ss_pred HHHHhhhcccchhhHHHhh-hcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHH-hhHHHHHHHHHHH
Q psy4871 59 AAFTTGMSFAWSAPVLEEL-LSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLL-MTGPITTASWIIA 136 (494)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~ 136 (494)
..+..++..+...|.+|.+ ++ ++|.++.+.|++.+.+.++..+.+++.|.++||+|||+.++ .+.++..++.+++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSE---EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 4566677777778888764 53 89999999999999999999999999999999999888765 4566667778888
Q ss_pred HHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhH--HHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHH
Q psy4871 137 MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTI--GTLFQISCHLGILYTYVLGSE----LSYMNYLTYS 210 (494)
Q Consensus 137 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~ 210 (494)
+++++++.+++.|++.|.+.+...|...+++.|+.|+++|++. .+....+.++|.++++.++.. ++||+.|++.
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 9999999999999999988888888888899999887777654 566667777777777777654 5899999999
Q ss_pred HHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHH
Q psy4871 211 LIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFV 288 (494)
Q Consensus 211 ~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 288 (494)
+++.++..+.. +++||.|+....+ + ++.+.++ ++++..+. ..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~----------------~~~~~~~~~~~~~~~~-~~ 205 (375)
T TIGR00899 162 ALAFVLCGVLVWLFLPSYPRGAPGA-------------------L----------------TRLEVRGLLASRDTRL-LF 205 (375)
T ss_pred HHHHHHHHHHHHHhCCCcccCcccc-------------------c----------------CcchhhhhhcCcchHH-HH
Confidence 88877666554 5578876321000 0 0001122 22332222 12
Q ss_pred HHHHHHHHHHccchHhHHHhHHHHHH-hcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHH
Q psy4871 289 FMAFLAVFRAFTGVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 366 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 366 (494)
....+... .......+.|.++. +.+.+. ..+.......+..+++.++.+++.||++||+.+..+.+...+....
T Consensus 206 ~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 281 (375)
T TIGR00899 206 VACTLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTG 281 (375)
T ss_pred HHHHHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 21111111 12233445566654 345543 3444444555666778889999999999999887766654444333
Q ss_pred HHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 367 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
+... ++.+.......+.+++.+.. .+....+..|..|++ ++++.++.+...++|..++|.+.|.+.
T Consensus 282 ~~~~------------~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 282 LAAD------------NSLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 12333334444445444433 344557778888765 679999999999999999999999988
Q ss_pred hhcC
Q psy4871 447 KHIG 450 (494)
Q Consensus 447 ~~~~ 450 (494)
+..+
T Consensus 348 ~~~g 351 (375)
T TIGR00899 348 ERWS 351 (375)
T ss_pred Hhcc
Confidence 7443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=225.51 Aligned_cols=340 Identities=13% Similarity=0.071 Sum_probs=238.7
Q ss_pred HHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCc-----hhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHH
Q psy4871 57 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNE-----GSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTA 131 (494)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i 131 (494)
.++.++.++..+...+.+|.+.+ ++|.+..+ .|++.+++.++..+++++.|+++||+|||++++.+.++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 96 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVE---QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI 96 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH---HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence 34455566667777888898885 88888665 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHH
Q psy4871 132 SWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYL 207 (494)
Q Consensus 132 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f 207 (494)
+.+++.++++++.+++.|++.|++.+ ..+....++.+++|+++|+++.++...+..+|.++++.+++. .+||+.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 175 (408)
T PRK09874 97 VMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVF 175 (408)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999999999999999855 557778889999999999999999999999998888888765 5899999
Q ss_pred HHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHH
Q psy4871 208 TYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMK 285 (494)
Q Consensus 208 ~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 285 (494)
++.+++.++..+.. +++||.++.. + +++ ..+. .+..+ +++++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~-~~~~-------------~~~~~~~~~~~~~~ 222 (408)
T PRK09874 176 FITASVLFLCFLVTLFCIRENFQPV----S---------------KKE-MLHM-------------REVVTSLKNPKLVL 222 (408)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccc----c---------------chh-hhHH-------------HHHHHhCcCCchHH
Confidence 99888877665544 4556543100 0 000 0000 00111 33333332
Q ss_pred HHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-c----hhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHH
Q psy4871 286 AFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-P----SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGC 360 (494)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 360 (494)
........... .......+.+.+..+.+... + .+....+.+++.+++.+..+++.||++||+.+..+..+.
T Consensus 223 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 298 (408)
T PRK09874 223 SLFVTTLIIQV----ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFS 298 (408)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 22221111111 12233344555555432221 1 223344556777788889999999999999888877766
Q ss_pred HHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4871 361 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYK 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~ 440 (494)
.++.+.+... ++.+...+..++.+.+.+. ..+...++..+..|++.+|+..++.+....+|..++|.
T Consensus 299 ~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~ 365 (408)
T PRK09874 299 VLLLIPMSFV------------QTPLQLGILRFLLGAADGA-LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPL 365 (408)
T ss_pred HHHHHHHHHh------------ccHHHHHHHHHHHHhhhHh-hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHH
Confidence 6655544332 2334444444555555543 33444466778889899999999999999999999999
Q ss_pred hhhchhhhcC
Q psy4871 441 LFFLMDKHIG 450 (494)
Q Consensus 441 i~~~l~~~~~ 450 (494)
+.|.+.+..+
T Consensus 366 ~~G~l~~~~g 375 (408)
T PRK09874 366 MGAAISANYG 375 (408)
T ss_pred HHHHHHhhcc
Confidence 9999987444
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=225.12 Aligned_cols=333 Identities=15% Similarity=0.143 Sum_probs=229.3
Q ss_pred HhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhh
Q psy4871 62 TTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRS 141 (494)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~ 141 (494)
...+......|.+|.+.+ +++.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.+++.++++
T Consensus 19 ~~~~~~~~~~p~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~ 95 (394)
T PRK11652 19 VGQMAQTIYVPAIADMAR---DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS 95 (394)
T ss_pred HHHHHHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 444555666788888885 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHH
Q psy4871 142 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIF 217 (494)
Q Consensus 142 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~ 217 (494)
++.+++.|++.|++.+...+....+..|++++++++++.++...+..+|..++|.++.. .+||+.|++.++..++.
T Consensus 96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~ 175 (394)
T PRK11652 96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV 175 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 99999999999999988888888899999999999999999999999888888877755 58999999988776655
Q ss_pred HHH-hhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHH
Q psy4871 218 TVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAV 295 (494)
Q Consensus 218 ~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 295 (494)
.+. .+++||+++.. ++ +.+ .+..+++ ++++..+... +......
T Consensus 176 ~~~~~~~~~~~~~~~---------------------~~-~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~~ 220 (394)
T PRK11652 176 TFSMARWMPETRPAD---------------------AR-RTR------------VLASYRTLLSNRRFNCYL-LMLIGTL 220 (394)
T ss_pred HHHHHHhCCccCccc---------------------cc-hhH------------HHHHHHHHHcChHHHHHH-HHHHHHH
Confidence 443 45677764210 00 000 0112333 3343333222 1111111
Q ss_pred HHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHh
Q psy4871 296 FRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYV 373 (494)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (494)
.+...+..+.+.++++ .+.+. ..+.......++.+++.++.+++.||.+++... ......++.+.+......
T Consensus 221 ----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 294 (394)
T PRK11652 221 ----AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWF 294 (394)
T ss_pred ----HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 1123334445556655 45443 344555556677777888888888888733222 222222222221111111
Q ss_pred hhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 374 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
. ..+.+.......+.+.+.+.. .|...++..|.+| +.++++.++.+....+|..+++.+.+.+..
T Consensus 295 ~-------~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 295 G-------VMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred c-------cccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 0 112344444455555555543 3455577778887 468999999999999999999999888765
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=221.93 Aligned_cols=343 Identities=14% Similarity=0.064 Sum_probs=226.9
Q ss_pred HHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH
Q psy4871 58 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM 137 (494)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 137 (494)
++.++..+.........+.+.. +++.++.+.+++.+.+.+++.++++++|+++||+|||++++++.++.++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~ 86 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLK---ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML 86 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 3344444433333344444454 8888999999999999999999999999999999999999999999999998888
Q ss_pred HHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHH
Q psy4871 138 YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTYSLIIP 214 (494)
Q Consensus 138 ~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~ 214 (494)
++.+. ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.+++.+ .|+..+.+.+...
T Consensus 87 ~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~ 163 (393)
T PRK11195 87 FGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIY 163 (393)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87664 78899999999999999999999999999999999999999999999999998773 4555666555554
Q ss_pred HHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHH
Q psy4871 215 IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFL 293 (494)
Q Consensus 215 ~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 293 (494)
++..+..+.+||+|.... .++++.... .++.. ..++. ++++..+.........
T Consensus 164 ~~~~~~~~~l~~~~~~~~--~~~~~~~~~---------------~~~~~---------~~~~~l~~~~~~~~~~~~~~~~ 217 (393)
T PRK11195 164 LLAALFNLFIPRLGARRP--GQSWNPIAL---------------LRDFF---------HACRVLWRDKLGRFSLAGTTLF 217 (393)
T ss_pred HHHHHHHhcCCCCccccc--ccCCCHHHH---------------HHHHH---------HHHHHHHhCchhHHHHHHHHHH
Confidence 444455567787653210 000000000 00000 01223 3333333222211111
Q ss_pred HHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHH
Q psy4871 294 AVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYY 371 (494)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 371 (494)
... .....+..+.++++ .+.+. +.+......+++.+++.++.+++.||.++++.+..+. +.++....+...
T Consensus 218 ~~~-----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~- 290 (393)
T PRK11195 218 WGA-----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ- 290 (393)
T ss_pred HHH-----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-
Confidence 111 12222333334433 34443 5667777888899999999999999999887776664 333332222221
Q ss_pred HhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcch-hhHHHHHHHHHHHHHHHHHHHhhhchhhhcC
Q psy4871 372 YVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM-KAVSCAVINILCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~ 450 (494)
++.+......++.+.+.+....+.. +...+..|++. +|++.++.+...+++..++..+++.+. ..|
T Consensus 291 -----------~~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~-~~~ 357 (393)
T PRK11195 291 -----------HSLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV-KLG 357 (393)
T ss_pred -----------hHHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH-HcC
Confidence 1333334445455555554444443 66677666654 799999999999999999999998664 344
Q ss_pred CC
Q psy4871 451 KT 452 (494)
Q Consensus 451 ~~ 452 (494)
..
T Consensus 358 ~~ 359 (393)
T PRK11195 358 VP 359 (393)
T ss_pred CC
Confidence 33
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=224.28 Aligned_cols=327 Identities=11% Similarity=0.054 Sum_probs=229.3
Q ss_pred cccchhhHHHh-hhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHH
Q psy4871 66 SFAWSAPVLEE-LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLG 144 (494)
Q Consensus 66 ~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~ 144 (494)
......|.++. +.+ ++++++.+.|++.+.+.++..+.+++.|+++||+|||++++.+.++.+++.+++.++++++.
T Consensus 25 ~~~~~~~~~~~~~~~---~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (400)
T PRK11646 25 GFFVVFPLISIRFVD---QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWL 101 (400)
T ss_pred HHHHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 33444555553 453 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHh
Q psy4871 145 LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE---LSYMNYLTYSLIIPIIFTVTF 221 (494)
Q Consensus 145 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~---~~w~~~f~~~~~~~~~~~~~~ 221 (494)
+++.|+++|++.+...+...+++.|++|+++|+++.++......+|..+||.+++. .+||+.|++.++..++..+..
T Consensus 102 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~ 181 (400)
T PRK11646 102 LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFN 181 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988889999999999999999999999999999999999888876 489999999887776655433
Q ss_pred -hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHc
Q psy4871 222 -MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAF 299 (494)
Q Consensus 222 -~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 299 (494)
+++||.+. .+ ..+ +.+.++++ ++++..+... ........
T Consensus 182 ~~~~~~~~~-----~~--------------~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~--- 222 (400)
T PRK11646 182 AWLLPAYKL-----ST--------------VRT----------------PVREGMTRVLRDKRFVTYV-LTLTGYYM--- 222 (400)
T ss_pred HHhCCcccc-----cc--------------cch----------------hhHHHHHHHHcCchHHHHH-HHHHHHHH---
Confidence 44554210 00 000 00112333 4444333211 11111111
Q ss_pred cchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhh-cccCchhHHHHhhHHHHHHHHHHHHHHHhhhcc
Q psy4871 300 TGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYI-DRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIEL 377 (494)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (494)
.......+.|.+.++.+.+. ..+....+.++..+.+....+++. ||++.++.+..+..+.+++..++...
T Consensus 223 -~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------- 294 (400)
T PRK11646 223 -LAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------- 294 (400)
T ss_pred -HHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------
Confidence 11223456788777765432 344444555555554444444444 55666666666666666665554432
Q ss_pred ccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 378 QYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
++.+.......+++.+... ..|...+++.+..|++.||++.|+.+....+|..++|.+.|.+.|.
T Consensus 295 -----~~~~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 295 -----SNLQQLFTLICLFYIGSII-AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred -----hhHHHHHHHHHHHHHHHHH-HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 1223333334444444443 3344458888999999999999999999999999999999999984
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=219.28 Aligned_cols=326 Identities=14% Similarity=0.073 Sum_probs=230.1
Q ss_pred cccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHH
Q psy4871 66 SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGL 145 (494)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l 145 (494)
......|.+|.+.+ ++|+++++.|++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+
T Consensus 15 ~~~~~~~~lp~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l 90 (355)
T TIGR00896 15 ALTSVGPLLPQIRS---ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL 90 (355)
T ss_pred ccccCcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence 34566889999996 999999999999999999999999999999999999999999999988888877 77899999
Q ss_pred HHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHH
Q psy4871 146 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL------SYMNYLTYSLIIPIIFTV 219 (494)
Q Consensus 146 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~------~w~~~f~~~~~~~~~~~~ 219 (494)
++.|++.|++.+...+....++.|++| ++|+++.++.+.+..+|..+++.++..+ +||+.|.+.+++.++..+
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888999886 5799999999999999888887776542 399888776665443322
Q ss_pred HhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHH
Q psy4871 220 TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRA 298 (494)
Q Consensus 220 ~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 298 (494)
.++|+.++ +++ .++...+...++ ++++..+. ..+. .+..
T Consensus 170 --~~~~~~~~----------------------~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~ 209 (355)
T TIGR00896 170 --AWIPQVRR----------------------RVA-----------ANQTTTRLTPVRIWRSPLAWQ-VTVF----FGLQ 209 (355)
T ss_pred --HHhhhhcc----------------------ccC-----------CCCCCCCCCCchhhcCHhHHH-HHHH----HHHH
Confidence 23343320 000 000001112333 44433322 1111 1112
Q ss_pred ccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccC-chhHHHHhhHHHHHHHHHHHHHHHhhhc
Q psy4871 299 FTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAG-RRVLFLVSSAGCSLFSFIAGLYYYVTIE 376 (494)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (494)
.........|.|.++++.+.+. ..+.......++.++++++.|++.||++ ||+.+..+..+.+++.+.+.+..
T Consensus 210 ~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~----- 284 (355)
T TIGR00896 210 SGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP----- 284 (355)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-----
Confidence 2224456678898888777664 5667777888999999999999999994 66666666666666665554321
Q ss_pred cccCCCccchHhHHHHHHHHHHhhcccccchhhhhccc-CCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhcC
Q psy4871 377 LQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEY-FSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~ 450 (494)
.... .....+++++.+.. .+...+...+. .+++.++...++.+....++.+++|.+.|.+.|..+
T Consensus 285 -------~~~~-~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 285 -------MHGL-WAWALVLGLGQGGA-FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred -------hhHH-HHHHHHHHHhhhhH-hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 11334455554332 23333444433 445677899999999999999999999999987443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=223.27 Aligned_cols=269 Identities=13% Similarity=0.119 Sum_probs=199.1
Q ss_pred HHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh
Q psy4871 61 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR 140 (494)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~ 140 (494)
+..........+.+|.+.+ +++.++.+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+++.+++
T Consensus 13 ~~~~~~~~~~~~~lp~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~ 89 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAA---DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE 89 (392)
T ss_pred HHHHHHHHHHhhhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444455578899985 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHH
Q psy4871 141 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPII 216 (494)
Q Consensus 141 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~ 216 (494)
+++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.++.. .+||+.|++.+++.++
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i 169 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGIL 169 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888888888888755 4899999998887776
Q ss_pred HHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHH
Q psy4871 217 FTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLA 294 (494)
Q Consensus 217 ~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 294 (494)
..+.. +++||+++. +.+ ++.. .....++ ++++..+..........
T Consensus 170 ~~~~~~~~~~~~~~~---~~~--------------~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (392)
T PRK10473 170 VLLLSLFILKETRPA---RAP--------------AASS----------------KPRENSESLLNRFFLSRLVITTLSV 216 (392)
T ss_pred HHHHHHHHcCCCCCc---ccC--------------Cccc----------------hHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 65543 566775311 000 0000 0001122 33433332222221111
Q ss_pred HHHHccchHhHHHhHHHHHH-hcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHH
Q psy4871 295 VFRAFTGVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLY 370 (494)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (494)
.. ......+.|.++. +.|.+. ..+......+++.+++.++.+++.||+|||+.+..+..+..++.+++...
T Consensus 217 ~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 217 TV-----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HH-----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2233344455554 346554 44556667888889999999999999999999888888777776665543
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=221.95 Aligned_cols=359 Identities=16% Similarity=0.180 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHHhhhcccc-hhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 50 FGSEAHACIAAFTTGMSFAW-SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
+.++..++...+....+... ..+.+..+. + |.+....+.+++.++++++++++.+++|.+.||++..+.+....++
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~-e--dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~ 120 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSGLK-E--DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGIL 120 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcCCc-c--ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHH
Confidence 33444444444444444332 233334444 3 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh--------
Q psy4871 129 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-------- 200 (494)
Q Consensus 129 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-------- 200 (494)
+++..++.....|++.+++.|++.|+..+..+|....+++.|+.+++|++.++++.+...+|.++|++++..
T Consensus 121 w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~ 200 (495)
T KOG2533|consen 121 WGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG 200 (495)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence 999998888899999999999999999999999999999999999999999999999999999999888765
Q ss_pred --hhhHHHHHHHHHHHHHHHHHh-hccCcchh--HHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccc----ccc
Q psy4871 201 --LSYMNYLTYSLIIPIIFTVTF-MFMPESPY--FYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK----NVE 271 (494)
Q Consensus 201 --~~w~~~f~~~~~~~~~~~~~~-~~~~esp~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 271 (494)
.||||.|.+.++++++..+.. +++|+.|. |...+. +.....++.++.... +.+
T Consensus 201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~------------------ek~~~~~~~~~~~~~~~~~~~~ 262 (495)
T KOG2533|consen 201 GLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDE------------------EKELVVERLRESPSGGIENKFK 262 (495)
T ss_pred CcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchH------------------HHHHHHHHHHhccCCCcccccC
Confidence 389999999999998887655 78899885 211111 100001111111111 123
Q ss_pred ccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhccc-
Q psy4871 272 RTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRA- 347 (494)
Q Consensus 272 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~- 347 (494)
...+++ ++++..| .+.+..++.....+.+.+|+|.++++ .+++. ++..+.....++++++.+++|+++||+
T Consensus 263 ~~~~~~a~~dp~vw-----~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~ 337 (495)
T KOG2533|consen 263 WKGFKEALKDPGVW-----PFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK 337 (495)
T ss_pred HHHHHHHHhchhHH-----HHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence 344555 5555443 34444444444567899999999998 34654 778888999999999999999999994
Q ss_pred ---CchhHHHHhhHHHHHHH-HHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhh-H
Q psy4871 348 ---GRRVLFLVSSAGCSLFS-FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKA-V 422 (494)
Q Consensus 348 ---g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~-~ 422 (494)
.+|........+..+.. +.+... ....... ..++.+........+......++....+.|. +
T Consensus 338 ~~~~~~~~~~~~~~~~~~~g~~~l~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~ 404 (495)
T KOG2533|consen 338 TIFARRLLFIVFLCLYAIIGAISLLAA------------AVLPGAY-GAFLIGPYGLIATAIIALSWTSANLAGNTKALT 404 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh------------ccchHHh-HHHHhcchhhHHHHHHHHhhccccccchHHhHH
Confidence 44544444444333333 222221 1111111 1111111111222334445666666555444 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 423 SCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 423 ~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
..+........+++++|.+......
T Consensus 405 ~~~~~i~~~~s~~~~~~~~~~~~~a 429 (495)
T KOG2533|consen 405 TVSAIIDGTGSAGAISGQLFRSLDA 429 (495)
T ss_pred HHhhhhcchhHHHHhhhhhcccccC
Confidence 4444455566666666666555444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=222.47 Aligned_cols=340 Identities=11% Similarity=0.010 Sum_probs=234.7
Q ss_pred HHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHH
Q psy4871 59 AAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY 138 (494)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~ 138 (494)
..++.....+...|.+|.+.++ ++|+++.+.|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.++
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~--~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~ 92 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSR--QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL 92 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH
Confidence 3344455555566666543323 89999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHH
Q psy4871 139 SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTYSLIIPI 215 (494)
Q Consensus 139 a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~~ 215 (494)
+++++.++++|++.|.+.+...+...++..|..|+++|+++.++.....++|.+++|.++..+ +|+..|++.++..+
T Consensus 93 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~ 172 (395)
T PRK10054 93 VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSA 172 (395)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 999999999999999888888888999999999999999999999999999999999888773 89999998888777
Q ss_pred HHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHH
Q psy4871 216 IFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFL 293 (494)
Q Consensus 216 ~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 293 (494)
+..+.. +++||+++ ++++.++ +..+.++ ++++..+......+..
T Consensus 173 i~~i~~~~~~~~~~~---------------------~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~ 218 (395)
T PRK10054 173 FPLVFIQIWVQRSEK---------------------AIATETG-------------SVWSPSVLLQDKALLWFTCSGFLA 218 (395)
T ss_pred HHHHHHHHHHhcccc---------------------ccccchh-------------hhhhhhhhccCceehHHHHHHHHH
Confidence 665444 44554321 0000000 0001123 4444444333222222
Q ss_pred HHHHHccchHhHHHhHHHHHHh---cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHH
Q psy4871 294 AVFRAFTGVQSIIAYANTIFAS---SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGL 369 (494)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 369 (494)
... ......+.+.+... .+.+. ..+.......+..+......+++.||.++|+.+..+..+..++...+..
T Consensus 219 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 293 (395)
T PRK10054 219 SFV-----SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIF 293 (395)
T ss_pred HHH-----HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 211 11222233333322 22221 1223334444444555677789999999999888887777776655543
Q ss_pred HHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhc
Q psy4871 370 YYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI 449 (494)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~ 449 (494)
. .++.+...+...+++.+... ..|.....+.+..|++.++++.+..+ ..++|..++|.+.|.+.|..
T Consensus 294 ~-----------~~~~~~~~~~~~~~~~g~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~ 360 (395)
T PRK10054 294 S-----------GNSLLLWGMSAAVFTVGEII-YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL 360 (395)
T ss_pred c-----------chHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 2 11223334445555555432 33455578889999999999988655 67799999999999999966
Q ss_pred CCC
Q psy4871 450 GKT 452 (494)
Q Consensus 450 ~~~ 452 (494)
+..
T Consensus 361 g~~ 363 (395)
T PRK10054 361 PPW 363 (395)
T ss_pred Chh
Confidence 543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=219.67 Aligned_cols=329 Identities=13% Similarity=0.166 Sum_probs=228.4
Q ss_pred ccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHH
Q psy4871 67 FAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLY 146 (494)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~ 146 (494)
.....|.+|.+.+ ++|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.++
T Consensus 7 ~~~~~p~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (377)
T PRK11102 7 IDMYLPALPVIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI 83 (377)
T ss_pred HHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 4456788899985 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh-
Q psy4871 147 VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF- 221 (494)
Q Consensus 147 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~- 221 (494)
+.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.++.. .+||+.|++.+++.++..+..
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888765 489999998888877665444
Q ss_pred hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHcc
Q psy4871 222 MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFT 300 (494)
Q Consensus 222 ~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 300 (494)
+++||+++. .++ ++.+.+ ....++++ ++++..+. ..+ ..+..+.
T Consensus 164 ~~~~~~~~~----~~~-------------~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~----~~~~~~~ 208 (377)
T PRK11102 164 FFIPETLPK----ERR-------------QPFHLR-------------TTIRNFASLFRHKRVLG-YML----ASGFSFA 208 (377)
T ss_pred HhCCccCcc----ccc-------------CCCChH-------------HHHHHHHHHHcChHHHH-HHH----HHHHHHH
Confidence 567775420 000 000000 00112233 33333221 111 1111222
Q ss_pred chHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccc
Q psy4871 301 GVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQ 378 (494)
Q Consensus 301 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (494)
+......+.|.++.+ .+.+. +.+.......+..+++.++.+++.||+|+|+.+..+..+..+..+.+.......
T Consensus 209 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~---- 284 (377)
T PRK11102 209 GMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD---- 284 (377)
T ss_pred HHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 233444455555544 45553 566677778888999999999999999999988887766544433332221111
Q ss_pred cCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHH-HHHHHHHHhhh
Q psy4871 379 YEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCT-TLGLISYKLFF 443 (494)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~~~~i~~~i~~ 443 (494)
...+...+...++..+.+.. .+.......|..| +.++++.++.+.... ++..+++.+.+
T Consensus 285 ----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 285 ----LGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred ----hhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222233333333333322 2233355677766 678999999877654 55666665543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=215.73 Aligned_cols=338 Identities=11% Similarity=0.032 Sum_probs=240.6
Q ss_pred HHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHH----HhhHHHHHH
Q psy4871 56 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSL----LMTGPITTA 131 (494)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~i 131 (494)
+.+..+...+..+...|.+|.+.+ ++|.|..++|++.+++.++..++++++|+++||+||+... ..+..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~---~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~ 85 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLK---GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 344455556667888899999995 9999999999999999999999999999999999985433 222222222
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHH
Q psy4871 132 SWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYL 207 (494)
Q Consensus 132 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f 207 (494)
..+..+++++.+++.|+++|.+.+...|...++..++ +++|++..+....+.++|.+++|.+++. +|||..|
T Consensus 86 --~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f 161 (382)
T TIGR00902 86 --AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNIL 161 (382)
T ss_pred --HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHH
Confidence 2444678999999999999999888888888887665 4668899999988888999888887765 5999999
Q ss_pred HHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHH
Q psy4871 208 TYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKA 286 (494)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 286 (494)
++.....++..+ .+.++|+++ ++++.+ + ++.....++++ +++++++..
T Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~---------------------~~~~~~-~--------~~~~~~~~~~~~l~~~~~~~~ 210 (382)
T TIGR00902 162 AILTAGLAFMLI-GFLIKPTIP---------------------PKDAIP-E--------DESQGDSAFIALLKNPMNLRF 210 (382)
T ss_pred HHHHHHHHHHHH-HHHcCCCCC---------------------CCcccc-c--------cccccchhHHHHHcChHHHHH
Confidence 887655333333 333333320 000000 0 00011122445 555544322
Q ss_pred HHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHH
Q psy4871 287 FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSF 365 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 365 (494)
... . +...........+.|.++++.|.+. ..+....+..+..+++.++.+++.||+|+|+++..+.+...+...
T Consensus 211 l~~-~----~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~ 285 (382)
T TIGR00902 211 LAA-V----CLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWA 285 (382)
T ss_pred HHH-H----HHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 221 1 1112234556667888888877765 466666678888889999999999999999999999999888887
Q ss_pred HHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHH-HHHHHHHHHHHhhhc
Q psy4871 366 IAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINI-LCTTLGLISYKLFFL 444 (494)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~~~~i~~~i~~~ 444 (494)
++.+. ++.+..+....+.++.++....+ ...++.+. |++.+++++++.+. ...+|..+++.+.|.
T Consensus 286 ~~~~~------------~~~~~~~~~q~l~g~~~~~~~~~-~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~ 351 (382)
T TIGR00902 286 IIGAI------------EAFPLIFLLQILHCGTFAVCHLA-AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF 351 (382)
T ss_pred HHHhH------------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76653 34556666777888777765544 44778887 88899999999874 567999999999999
Q ss_pred hhhhcC
Q psy4871 445 MDKHIG 450 (494)
Q Consensus 445 l~~~~~ 450 (494)
+.|..+
T Consensus 352 l~~~~g 357 (382)
T TIGR00902 352 IYPTLG 357 (382)
T ss_pred HHHhcc
Confidence 998544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=211.34 Aligned_cols=332 Identities=13% Similarity=0.095 Sum_probs=209.4
Q ss_pred HHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHH-hHhhhhhchHhhhhhhCchhHH-HhhHHHHHHHHHHHH
Q psy4871 60 AFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEI-GNYLSPIPAGMLVNRIGRKWSL-LMTGPITTASWIIAM 137 (494)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~i~~~~~~ 137 (494)
.++.+.......|.+|.+..+ +++.+++++|++.+...+ ++.++.++.|+ +||+|||+.+ +.+.++.+++..+.+
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~--~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~ 100 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTD--EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA 100 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH
Confidence 444455555566766654324 899999999999876655 55666655555 9999998875 456666678888888
Q ss_pred HHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCc--hhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHH
Q psy4871 138 YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR--GTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSL 211 (494)
Q Consensus 138 ~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~ 211 (494)
++++++.+++.+.+.|...+...|....++.++.++++| +...++.+.+.++|.+++|.++.. +|||..|++.+
T Consensus 101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~ 180 (393)
T PRK15011 101 WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA 180 (393)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence 999999887666555545567778888888888876655 344577788888888888888765 59999999998
Q ss_pred HHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhhhcCcchHHHHHHH
Q psy4871 212 IIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFM 290 (494)
Q Consensus 212 ~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (494)
+.+++..+.. +++||.++- ++.... +. + .. .++++........
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~-------~~--~----~~--~~~~~~~~~~~~~ 224 (393)
T PRK15011 181 VAFIVCGVMVWLFLPSMRKE---------------------LPLATG-------TL--E----AP--RRNRRDTLLLFVI 224 (393)
T ss_pred HHHHHHHHHHHhhcCccCCC---------------------Cccccc-------cc--c----cc--ccccccHHHHHHH
Confidence 8877666554 567776410 000000 00 0 00 0011111111111
Q ss_pred HHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHH
Q psy4871 291 AFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAG 368 (494)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 368 (494)
.... +........+.|.++++ .+.+. ..+.......++.+++.++.|+++||++||+.+..+.....+....+.
T Consensus 225 ~~~~----~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~ 300 (393)
T PRK15011 225 CTLM----WGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML 300 (393)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 1111 11233445567777754 45443 344444555666778899999999999999877766555444433222
Q ss_pred HHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 369 LYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
.. ++.+..+...++.+++.+.... ....+..|..|++ ++++.++.+...++|..++|.+.|.+.+.
T Consensus 301 ~~------------~~~~~~l~~~~l~~~~~g~~~~-~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~ 366 (393)
T PRK15011 301 MA------------HSPAILLGLQLLNAIYIGILGG-IGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEI 366 (393)
T ss_pred HH------------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223223333333333332222 2235677888865 99999999999999999999999999874
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-25 Score=216.33 Aligned_cols=346 Identities=12% Similarity=0.103 Sum_probs=232.5
Q ss_pred HHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhh-----CchhH-HHhhHHHH
Q psy4871 56 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-----GRKWS-LLMTGPIT 129 (494)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~ 129 (494)
..+..+..|......++.+|.+.+ +.|.+..++|.+ +.....+ ++.+++|+++||+ |||+. ++.+.++.
T Consensus 17 ~~~l~~~~gl~~~~~~~~l~~~l~---~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 17 LLILGFASGLPLALTSGTLQAWMT---VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 334445566777778888888885 788998899886 3344444 5889999999999 99885 66777777
Q ss_pred HHHHHHHHHH---hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-----h
Q psy4871 130 TASWIIAMYS---RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-----L 201 (494)
Q Consensus 130 ~i~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~ 201 (494)
+++...+++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.. .
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7887777775 4788899999999999999999999999999999999999999999999999888865543 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcC
Q psy4871 202 SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMG 280 (494)
Q Consensus 202 ~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 280 (494)
|||..|++.+++.++..+..+++||+++.. .+. + ... +....++++ +++
T Consensus 172 GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~-~--------------~~~------------~~~~~~l~~~~~~ 221 (491)
T PRK11010 172 GWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVP-K--------------TLE------------QAVVAPLRDFFGR 221 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccc-c--------------chh------------hhHHHHHHHHHcC
Confidence 899999999988777766666678865210 000 0 000 000112444 444
Q ss_pred cchHHHHHHHHHHHHHHHccchHhHHHhHHHHH-HhcCCCc-chhHHH-HHHHHHHHHhhhhhhhhhcccCchhHHHHhh
Q psy4871 281 RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIF-ASSETFL-PSDYIS-ILFAIILLVSIFPSTYYIDRAGRRVLFLVSS 357 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 357 (494)
+..+..... ..+... +......+.+.++ +..|++. +.+... ....++.+++.+++|++.||+++|+.+..+.
T Consensus 222 ~~~~~~ll~-~~l~~~----~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~ 296 (491)
T PRK11010 222 NNAWLILLL-IVLYKL----GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFG 296 (491)
T ss_pred cCHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333322221 111111 1223344555554 4456654 444444 3445788899999999999999988777665
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHH
Q psy4871 358 AGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLI 437 (494)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i 437 (494)
++.++..+.+..... . ..+.+......++..+..+.+.. ..+++..+..+++.+++..|+.+....+|..+
T Consensus 297 ~l~~l~~l~~~~l~~-~-------~~~~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~ 367 (491)
T PRK11010 297 ILQGVSNAGYWLLSI-T-------DKNLYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVY 367 (491)
T ss_pred HHHHHHHHHHHHHHh-c-------cccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 554544433322111 1 11222222223332222233232 33477888899999999999999999999999
Q ss_pred HHHhhhchhhhcC
Q psy4871 438 SYKLFFLMDKHIG 450 (494)
Q Consensus 438 ~~~i~~~l~~~~~ 450 (494)
++.+.|.+.+..|
T Consensus 368 ~~~~~G~l~~~~G 380 (491)
T PRK11010 368 VGPVAGWFVEAHG 380 (491)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998444
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=208.66 Aligned_cols=333 Identities=10% Similarity=0.004 Sum_probs=224.4
Q ss_pred HHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCch----hHHHhhHHHHHHHHHHH
Q psy4871 61 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK----WSLLMTGPITTASWIIA 136 (494)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~i~~~~~ 136 (494)
+......+...|.+|.+.+ +++.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .....
T Consensus 14 ~~~~~~~g~~~p~l~~~l~---~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLK---GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHhhhHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence 3334456778888888885 8999999999999999999999999999999999984 3333222222 22233
Q ss_pred HHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHH
Q psy4871 137 MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLI 212 (494)
Q Consensus 137 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~ 212 (494)
..+++++.+++.|++.|++.+...+...+++.++ +++|+++.+....+..+|..++|.+++. ++||..|++.++
T Consensus 89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~ 166 (382)
T PRK11128 89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA 166 (382)
T ss_pred HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 4458899999999999999888888888887776 3457777777777777888888777765 599999988776
Q ss_pred HHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHH
Q psy4871 213 IPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMA 291 (494)
Q Consensus 213 ~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 291 (494)
..++..+..++.||.++ +++. + .+.++...++++ ++++..+......+
T Consensus 167 ~~~~~~~~~~~~~~~~~----------------------~~~~--~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~ 215 (382)
T PRK11128 167 GVASMLLGQLLRPTIMP----------------------QGES--R-------QQESAGWPAWKALLKEPTVWRFLLCVS 215 (382)
T ss_pred HHHHHHHHHHccCCCCC----------------------cccc--c-------cccccccchHHHHHcChhHHHHHHHHH
Confidence 55544444444454321 0000 0 000011234555 55554443222222
Q ss_pred HHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHH
Q psy4871 292 FLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLY 370 (494)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (494)
.... .......+.+.+..+.|.+. ..+....+..+..++..++.+++.||+++|+.+..+....+++.+++...
T Consensus 216 l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T PRK11128 216 LLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST 290 (382)
T ss_pred HHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 2211 13345556677777777664 45566666777888888999999999999999888888877776655432
Q ss_pred HHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHH-HHHHHHHHHHHHhhhchhhhc
Q psy4871 371 YYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVIN-ILCTTLGLISYKLFFLMDKHI 449 (494)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~~~~i~~~i~~~l~~~~ 449 (494)
++.+..++..++.+++++... +....+..+. +++.+++..++.+ ....+|..++|.+.|.+.|.-
T Consensus 291 ------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 291 ------------TALPWLIVIQILHCGTFTVCH-LAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 244555666666676666543 3343666666 5555788888886 445667799999999998854
Q ss_pred C
Q psy4871 450 G 450 (494)
Q Consensus 450 ~ 450 (494)
+
T Consensus 357 g 357 (382)
T PRK11128 357 G 357 (382)
T ss_pred c
Confidence 4
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-24 Score=206.52 Aligned_cols=371 Identities=11% Similarity=0.103 Sum_probs=230.7
Q ss_pred HHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHH
Q psy4871 55 HACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI 134 (494)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 134 (494)
.+++......+.....+.+++.+.. |+| +.....|+.+...++.+++.++.|.++|.||||.+++.+.++..+|++
T Consensus 48 ~~~~~~~~~~~~~~~~a~~l~~I~~---diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~I 123 (599)
T PF06609_consen 48 AFSLAVIAAYFVLVLPASILPYINA---DIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSI 123 (599)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH---hcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHH
Confidence 3444444344455556677788885 888 457889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHH
Q psy4871 135 IAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYS 210 (494)
Q Consensus 135 ~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~ 210 (494)
+++-++|...++++..+.|+|.|.... ....++|..|.|+|+...++...........++.++.. -+|||.|++.
T Consensus 124 v~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~ 202 (599)
T PF06609_consen 124 VCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF 202 (599)
T ss_pred HhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence 999999999999999999999877764 45668999999999888777665555544455555543 4899999999
Q ss_pred HHHHHHHHHHh--hccCcchhHHHhhCC---hHHHHHHHHHHhcC-----------------C--hh-hHHHHHHHHH--
Q psy4871 211 LIIPIIFTVTF--MFMPESPYFYAIKNQ---EGKAIESLKWLRNK-----------------T--AD-QVQSELQIIK-- 263 (494)
Q Consensus 211 ~~~~~~~~~~~--~~~~esp~~l~~~~~---~~~a~~~~~~~~~~-----------------~--~~-~~~~~~~~~~-- 263 (494)
++...+.+++. ++.| |++...+++ ..+..+.++++... . .+ ....-...+-
T Consensus 203 ~i~~~i~~vl~~~fY~P--P~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG 280 (599)
T PF06609_consen 203 IIWSGIALVLIFFFYFP--PPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIG 280 (599)
T ss_pred HHHHHHHHHHHHHHhCC--CchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHH
Confidence 98877665444 3334 322222221 22222333333210 0 00 0000000000
Q ss_pred -------Hcccc-cccccchhh---hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc-CCCc----chhHHHH
Q psy4871 264 -------QNTSK-NVERTNFRE---FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL----PSDYISI 327 (494)
Q Consensus 264 -------~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~ 327 (494)
---+. ...+.++.. +++++.....++..++... . ++....+.|...... +.+. ..++...
T Consensus 281 ~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~---~-~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~ 356 (599)
T PF06609_consen 281 FVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGM---N-FFSVNILWPQQVVNVFGSDPISITEIGWISS 356 (599)
T ss_pred HHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHH---H-HHHHHHHHHHHHhhhccCCCcccceeehhhh
Confidence 00000 111222222 4432222111111111111 1 233333444443332 2111 3456667
Q ss_pred HHHHHHHHhhhhhhhhhcccCchh-HHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccc
Q psy4871 328 LFAIILLVSIFPSTYYIDRAGRRV-LFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPL 406 (494)
Q Consensus 328 ~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (494)
..+++..++.++.+.+..+++|-| .++++..++.+++.+++... .++....+...++.+++.+....+.
T Consensus 357 ~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~----------~~n~~~~i~~~~l~g~giG~~~~~~ 426 (599)
T PF06609_consen 357 PVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR----------PDNKNAAIAFLVLAGFGIGGILVPA 426 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc----------CCCcchHHHHHHHHHHhHHHHHHHH
Confidence 788888889899999998888644 44566555555444444321 1222233444555555554433333
Q ss_pred hhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 407 FTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 407 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
. ..+.-..|++..|++.|+..+++.+|+.++..++..+..
T Consensus 427 ~-~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 427 I-VIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred H-HeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 566667899999999999999999999999999988776
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=218.85 Aligned_cols=296 Identities=11% Similarity=0.119 Sum_probs=204.4
Q ss_pred HHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHH
Q psy4871 54 AHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW 133 (494)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 133 (494)
+..++..+......++.+++++.+++ +++++..+.|++.+.+.++++++.++.|+++||+|||+++.++.+++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek---~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ 112 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIER---RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS 112 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhh---hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence 34445666666777888999999996 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh---------------------------------------------------hHHHHHHHHHHHHhHhhhhhhh
Q psy4871 134 IIAMYSR---------------------------------------------------SVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 134 ~~~~~a~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
+++++.+ .+..++++|+++|+|.+..++.
T Consensus 113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~ 192 (633)
T TIGR00805 113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL 192 (633)
T ss_pred HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence 9998763 2456789999999999999999
Q ss_pred hhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHHHHHHHHH
Q psy4871 163 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL--------------------------SYMNYLTYSLIIPII 216 (494)
Q Consensus 163 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~--------------------------~w~~~f~~~~~~~~~ 216 (494)
..+++.|++|+++|+++.+++..+..+|.++|+++++.+ +||..|++.+++.++
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l 272 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL 272 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887541 277788888888887
Q ss_pred HHHHhhccCcc-hhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHH
Q psy4871 217 FTVTFMFMPES-PYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLA 294 (494)
Q Consensus 217 ~~~~~~~~~es-p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 294 (494)
..+.++++|+. |+.. .+.+.++.++.. ... ...+...+. ....+.....++. ++++.++ ...+.
T Consensus 273 ~~v~l~~~p~~lp~~~-~~~~~~~~~~~~--~~~-~~~~~~~~~-----~~~~~~~~~~~~~Ll~n~~f~-----~~~l~ 338 (633)
T TIGR00805 273 TSIPFFFFPKALPKEG-KRVNVDVHETEK--LEK-SEDKSRKKN-----SDITKDFPKIIKRLLCNPIYM-----LVILA 338 (633)
T ss_pred HHHHHHhCccccCCcc-cccchhhhhhhc--ccc-cccccchhh-----hhhHHHHHHHHHHHHcCcHHH-----HHHHH
Confidence 77666666654 2110 000000000000 000 000000000 0000001122344 5554333 23333
Q ss_pred HHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHH-HHHHhhhhhhhhhcccCc--hhHHHHhhHHHHHHHHH
Q psy4871 295 VFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAI-ILLVSIFPSTYYIDRAGR--RVLFLVSSAGCSLFSFI 366 (494)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~ 366 (494)
.+......+.+..|+|.++++ .+.+. .++.......+ +.+++.+++|+++||++. |+.+.++.++..++.++
T Consensus 339 ~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 339 QVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 333333466788899999875 45443 34444444443 567899999999999984 56666666666555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=204.02 Aligned_cols=328 Identities=14% Similarity=0.071 Sum_probs=217.5
Q ss_pred cccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhh-----CchhH-HHhhHHHHHHHHHHHHHH
Q psy4871 66 SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-----GRKWS-LLMTGPITTASWIIAMYS 139 (494)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~a 139 (494)
..+..++.+|.+.+ ++|+|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++..+.++.
T Consensus 3 ~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~ 77 (356)
T TIGR00901 3 PLGLVGNTLPYWLR---SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL 77 (356)
T ss_pred CchhHHhHHHHHHH---HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 34567788898886 999999999999765 455554 89999999998 89886 567777787777777776
Q ss_pred ---hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hh--------hH
Q psy4871 140 ---RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LS--------YM 204 (494)
Q Consensus 140 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~--------w~ 204 (494)
.+.+.+.+..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.. ++ ||
T Consensus 78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr 157 (356)
T TIGR00901 78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG 157 (356)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence 4667778888888998888899999999999999999999999999999999999888754 46 99
Q ss_pred HHHHHHHHHHHHHHHHhh-ccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcc
Q psy4871 205 NYLTYSLIIPIIFTVTFM-FMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRS 282 (494)
Q Consensus 205 ~~f~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 282 (494)
..|++.++..++..+..+ ..||+++. +. .+ +++.. +.+.++++ ++++.
T Consensus 158 ~~f~i~ai~~l~~~~~~~~~~~e~~~~-----~~---------------~~-~~~~~---------~~~~~~~~~~~~~~ 207 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLFLAKEPQED-----AS---------------VP-KPLTQ---------AVLKPIREFFQRKN 207 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcc-----cc---------------cc-hhHHH---------HHHHHHHHHHHhcC
Confidence 999999988777665544 35664210 00 00 00000 00112333 33322
Q ss_pred hHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHH-HHHHHhhhhhhhhhcccCchhHHHHhhHHH
Q psy4871 283 NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFA-IILLVSIFPSTYYIDRAGRRVLFLVSSAGC 360 (494)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 360 (494)
.+ +.........+. .........+.|.++.+.|++. +.+......+ +..+++.++++++.||+|+|+.+..+.++.
T Consensus 208 ~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~ 285 (356)
T TIGR00901 208 MI-QALLLLLLIVLY-KLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQ 285 (356)
T ss_pred ch-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11 112222222221 1224456667788877766553 3333444434 567799999999999999999888888777
Q ss_pred HHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHH
Q psy4871 361 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCT 432 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 432 (494)
++...++.+........+. .....+......++.+++.+... +...++..|.+|++.||+..|+.++..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 286 ALTNAGFVWLASNGHHDGI-TFPHLLMLFLTITLEAVTGGLGT-VAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHhcCccccc-ccchHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 7665544433110000000 00122333444444455544433 4555899999999999999999887654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-24 Score=204.43 Aligned_cols=345 Identities=13% Similarity=0.093 Sum_probs=219.4
Q ss_pred HHHHHHhhhcccchhh-HHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCc-hhHHHhhHHHHHHHHH
Q psy4871 57 CIAAFTTGMSFAWSAP-VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGR-KWSLLMTGPITTASWI 134 (494)
Q Consensus 57 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~ 134 (494)
++..+.+....+...| ..+.+. + ++|++..++|++.+++.++..++++++|.++||+|| |+++.++.++.+++..
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~-~--~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMS-K--TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3344444555555544 445555 3 789999999999999999999999999999999965 7888888988888888
Q ss_pred HHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhee--------cccCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy4871 135 IAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLG--------EISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNY 206 (494)
Q Consensus 135 ~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~--------e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~w~~~ 206 (494)
+..+.++++.+++.|++.|++.+...+...++.. |......|.+..+. .++.+|..+++.++....|+ +
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~--lG~~ig~~l~g~l~~~~~~~-~ 161 (418)
T TIGR00889 85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT--IGFIAAMWAVSLLDIELSNI-Q 161 (418)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh--HHHHHHHHHHHHhcccchhH-H
Confidence 8889999999999999999987766665554421 22222334455542 34444444444442222343 4
Q ss_pred HHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHH
Q psy4871 207 LTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMK 285 (494)
Q Consensus 207 f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 285 (494)
|++.++..++..+..+++||+|+- +++.+ .+.. +..+.+.++ ++++.++.
T Consensus 162 f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~--------------~~~~------------~~~~~~~~~~~k~~~~~~ 212 (418)
T TIGR00889 162 LYITAGSSALLGVFALTLPDIPVA---KSTAK--------------MSIK------------VMLGLDAFILFKNKRMAI 212 (418)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCC---ccccc--------------cCHH------------HHhhhhHHHHhcCCCeee
Confidence 556666666555556778887521 00000 0000 000011223 44444432
Q ss_pred HHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc---------chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHh
Q psy4871 286 AFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL---------PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVS 356 (494)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 356 (494)
..+..+.... .......+.+.++++.+.+. ..+....+..+..+++.++.+++.||+|+|+++..+
T Consensus 213 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~ 287 (418)
T TIGR00889 213 FFFFSMLLGA-----PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLS 287 (418)
T ss_pred HHHHHHHHHh-----HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 2222222111 12234455566666655331 235666667778889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHH-HHHHHHH
Q psy4871 357 SAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVIN-ILCTTLG 435 (494)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~~~ 435 (494)
.++.+++..++..... . ....+..++..++.+.+.+.. .+....++.|.+|++.|++++|+.+ ....+|.
T Consensus 288 ~~~~~v~~~l~~~~~~-~-------~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~ 358 (418)
T TIGR00889 288 LVAWALRFGFFAYGDP-E-------YFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGS 358 (418)
T ss_pred HHHHHHHHHHHHHcCc-c-------hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHH
Confidence 8888777665544210 0 001122334455555555433 3444477899999999999999997 5678999
Q ss_pred HHHHHhhhchhhhcC
Q psy4871 436 LISYKLFFLMDKHIG 450 (494)
Q Consensus 436 ~i~~~i~~~l~~~~~ 450 (494)
+++|.+.|.+.+..+
T Consensus 359 ~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 359 LLGYILSGVMVEKMF 373 (418)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=191.87 Aligned_cols=332 Identities=14% Similarity=0.088 Sum_probs=202.4
Q ss_pred CCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhh
Q psy4871 85 PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISP 164 (494)
Q Consensus 85 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~ 164 (494)
+.+....|.+.|.|.+++.+.++.+|.++||+|||+++++|++..++..++.+++.|+..++++|++.|+..|.. .+..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHH
Confidence 345667799999999999999999999999999999999999999999999999999977888899999998766 6789
Q ss_pred hheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhh------HHHHHH----HHHHHHH-HHHHhhccCcchhHHHh
Q psy4871 165 MYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSY------MNYLTY----SLIIPII-FTVTFMFMPESPYFYAI 233 (494)
Q Consensus 165 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~w------~~~f~~----~~~~~~~-~~~~~~~~~esp~~l~~ 233 (494)
++++|.+++++|+++++..+.++++|.++||.+|+++.- +++|.. ..++... .....+++||+-..
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~--- 219 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPL--- 219 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccc---
Confidence 999999999999999999999999999999999988532 122222 2222222 23445788998321
Q ss_pred hCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhhhcCcchHH--HHHHHHHHHHHHHccchHhHHHhHHH
Q psy4871 234 KNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMK--AFVFMAFLAVFRAFTGVQSIIAYANT 311 (494)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (494)
+++.++. .+..+..++. .+..+-........+++++... .....+.+..+.... .+....+...
T Consensus 220 rk~~~~~------------~~~~~~~~~~-~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~-l~s~~~~t~~ 285 (451)
T KOG2615|consen 220 RKRNDEH------------STLQEAADDR-LALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLE-LFSGLENTVL 285 (451)
T ss_pred hhhcccc------------cchhhhhhhh-hhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH-HHHHHHhhHH
Confidence 1111110 0000000000 0000000000000022222221 111111111111111 1222223344
Q ss_pred HH--HhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccC--chhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccch
Q psy4871 312 IF--ASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAG--RRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSW 386 (494)
Q Consensus 312 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (494)
.+ +..|++. +.+.+....++.+.+.........+|.. .+-.+..+..++.-..+++.. ...+.
T Consensus 286 ~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~------------~~~~~ 353 (451)
T KOG2615|consen 286 FLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL------------ARTPV 353 (451)
T ss_pred HhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc------------cccch
Confidence 44 2334443 4555555555544444444444444443 223333333333333333322 12333
Q ss_pred HhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 387 VPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
.......+..+...... +....++....|+++||+.+|+..+.+.++.++||.+.|.+..
T Consensus 354 ~l~~~s~l~sf~~A~~v-t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 354 VLYLGSTLKSFSTASVV-TCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hhhHHHHHHHHHHHHhh-HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 44444455554444433 4455889999999999999999999999999999999998887
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-24 Score=231.51 Aligned_cols=326 Identities=12% Similarity=0.054 Sum_probs=219.4
Q ss_pred CchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHh---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhh
Q psy4871 89 NEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLM---TGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPM 165 (494)
Q Consensus 89 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~ 165 (494)
...++..+++.++++++++++|+++||+|||+++.. +.++..+..+.+...++++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 346888999999999999999999999999997643 23333333333444589999999999999999999999999
Q ss_pred heecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHH
Q psy4871 166 YLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAI 241 (494)
Q Consensus 166 ~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~ 241 (494)
++.+++|+++|++++++.+++..+|.++||.++++ .+|++.|+..++..++.++..+++|+++.- ..+..
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---- 205 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLK---- 205 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCe----
Confidence 99999999999999999999999999999999887 489999866666666656666677765310 00000
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc-CCC
Q psy4871 242 ESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETF 319 (494)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 319 (494)
.+..... .....++. .+++.++. ..+...+..+ ....+..+.|.++.+. +.+
T Consensus 206 ---------~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~~ 259 (1140)
T PRK06814 206 ---------IDRNIIR------------STITLLKYAKADKRIWL-AILGISWFWL----VGAVVLSQLPLLAKETLGGD 259 (1140)
T ss_pred ---------eccchHH------------HHHHHHHHHhcCchHHH-HHHHHHHHHH----HHHHHHHHhHHHHHHHcCCc
Confidence 0000000 00112333 33433332 2222222111 1345556778887663 544
Q ss_pred c-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhh-hccc-------cCCCccchHhHH
Q psy4871 320 L-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVT-IELQ-------YEIPYTSWVPFL 390 (494)
Q Consensus 320 ~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~ 390 (494)
. ..+......+++.+++.++.+++.++..+++.+..+.++.+++.+.+.+..... .... .-...+.+...+
T Consensus 260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1140)
T PRK06814 260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILI 339 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHH
Confidence 3 466777788899999999999999888776665555555555444333310000 0000 000123444555
Q ss_pred HHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 391 SISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
..++++++.+....+ ..+++.+..|++.+|+++|+.+++..++..+++.+.+.+.+
T Consensus 340 ~~~~~g~~~~~~~~~-~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 340 DLFGLAAAGGLYIVP-LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHHHHHhHHH-HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665544434 45889999999999999999999999999999999998874
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=199.23 Aligned_cols=353 Identities=14% Similarity=0.145 Sum_probs=233.7
Q ss_pred cchhhHHHhhhcCCCCCCCCCCc-hhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHH
Q psy4871 68 AWSAPVLEELLSKESPIPMSPNE-GSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLY 146 (494)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~ 146 (494)
...+.+.|.+.+ ++|+|+.| .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.
T Consensus 43 ~n~s~a~p~L~~---elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~ 119 (511)
T TIGR00806 43 PGESFITPYLLT---VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQ 119 (511)
T ss_pred chHHHHHHHHHH---HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556678885 99999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHH---HHHHHHHHHHHH
Q psy4871 147 VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE---LSYMNYLT---YSLIIPIIFTVT 220 (494)
Q Consensus 147 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~---~~w~~~f~---~~~~~~~~~~~~ 220 (494)
+.|++.|++.|..+ +...++..|+|+++|+++.++...+..+|.+++++++.. ++||+.+. +......+.++.
T Consensus 120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~ 198 (511)
T TIGR00806 120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFL 198 (511)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999988876 48887544 444444555566
Q ss_pred hhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccc--cccccchhh-hcCcchHHHHHHHHHHHHHH
Q psy4871 221 FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK--NVERTNFRE-FMGRSNMKAFVFMAFLAVFR 297 (494)
Q Consensus 221 ~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (494)
.+++|..++.+.-|++.+.............+++.....+..+..... ..-...+++ .++ +.++...++...
T Consensus 199 a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n-----~~vl~WSlWwa~ 273 (511)
T TIGR00806 199 ALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRN-----PQLLLWSLWWVF 273 (511)
T ss_pred HHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcC-----cchhhhhHHHHH
Confidence 688996666554443221100000000000000000000000000000 000111222 233 333444555555
Q ss_pred HccchHhHHHhHHHHHHhcCCCc--chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhH--HHHHHHHHHHHHHHh
Q psy4871 298 AFTGVQSIIAYANTIFASSETFL--PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSA--GCSLFSFIAGLYYYV 373 (494)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~--~~~~~~~~~~~~~~~ 373 (494)
..++++.+..|...+.+....+. -.+..-.+..+.+.+.++..|++-.+..+...+.++.+ +.+..++++..
T Consensus 274 a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~---- 349 (511)
T TIGR00806 274 NSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQ---- 349 (511)
T ss_pred HhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhc----
Confidence 66667888888888887664321 23344455666677788888888655543222322222 22222222222
Q ss_pred hhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4871 374 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 442 (494)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~ 442 (494)
.++.|...+..+++...+.+... +...-+++....+.-|...|+.+++.-+-..+...++
T Consensus 350 --------t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 350 --------SHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred --------ccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 35778888888888888876553 4435555556666668888888777766665555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-24 Score=231.57 Aligned_cols=321 Identities=14% Similarity=-0.003 Sum_probs=217.2
Q ss_pred CCCCCC--CchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhHhh
Q psy4871 83 PIPMSP--NEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM---YSRSVLGLYVMRTLQGFSMA 157 (494)
Q Consensus 83 ~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~a~~~~~l~~~r~l~G~~~g 157 (494)
+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++..++.++.. ++++++.++++|+++|++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 118 (1146)
T PRK08633 39 AYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSA 118 (1146)
T ss_pred HcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 444443 4469999999999999999999999999999999999877666655443 45789999999999999999
Q ss_pred hhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-------------hhHHHHHHHHHH-HHHHHHHhhc
Q psy4871 158 AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-------------SYMNYLTYSLII-PIIFTVTFMF 223 (494)
Q Consensus 158 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-------------~w~~~f~~~~~~-~~~~~~~~~~ 223 (494)
...++..+++.|++|+++|++++++...+..+|.++++++++++ +|++.+.+..+. .++.+++.+.
T Consensus 119 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1146)
T PRK08633 119 IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYR 198 (1146)
T ss_pred hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998887663 233444333333 3333344466
Q ss_pred cCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccch
Q psy4871 224 MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGV 302 (494)
Q Consensus 224 ~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (494)
+||+|.....+.+.+ ..... ......++. ++++..+. .++...+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~-------------~~~~~------------~~~~~~~~~l~~~~~~~~-~~~~~~~~~~----~~ 248 (1146)
T PRK08633 199 LPKVPAAAPEVFDKK-------------KYLFP------------KLLWRNLKLLRSDRVLWL-AIIGLSYFWF----IS 248 (1146)
T ss_pred CcCCCCCCccccccc-------------ccccH------------HHHHHHHHHHhcCcHHHH-HHHHHHHHHH----HH
Confidence 787763211100000 00000 000112333 33333322 2222222111 12
Q ss_pred HhHHHhHHHHHHh-cCCCc--chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhcccc
Q psy4871 303 QSIIAYANTIFAS-SETFL--PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQY 379 (494)
Q Consensus 303 ~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (494)
.....+.|.++.+ .+.+. ..++.....+++.+++.++.+++.||+++++.+.++.++.+++.+++.+.
T Consensus 249 ~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--------- 319 (1146)
T PRK08633 249 QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--------- 319 (1146)
T ss_pred HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh---------
Confidence 3444556666654 45442 34566677888888999999999999999888877777777666655443
Q ss_pred CCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 380 EIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
.+.+..++..++++++.+.... ...+++.+..|++.||+++|+.+++..++.++++.+.+.+.
T Consensus 320 ---~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 320 ---PSLASVLVLFFLFGFSAGLFIV-PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred ---hhHHHHHHHHHHHHHHHHHhhH-HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444555566665554443 34488889999999999999999999998877776665543
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=210.23 Aligned_cols=378 Identities=15% Similarity=0.141 Sum_probs=262.7
Q ss_pred hHHHHHHHHHHHH-HhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 49 RFGSEAHACIAAF-TTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
-|.+++...+..+ .+|+... .+...+.+++ +++.+.++.+|+.++....+.+..++.+.+.||+|.|.+.++|.+
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~-~Gv~~~~~~~---~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINS-FGLLFEELMD---YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred eeeeeHhHHHHHHhhhcchhe-ehhhHHHHHH---HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 5666665555543 3444333 3366788885 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHH-HHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hh
Q psy4871 128 ITTASWIIAMYSRSVLGLYVM-RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LS 202 (494)
Q Consensus 128 ~~~i~~~~~~~a~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~ 202 (494)
+.+++.++.+|++++|++++. -++.|+|.|..+..+...+..|+.+ +|+.+.|+...+.++|.++-|.+..+ +|
T Consensus 120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G 198 (509)
T KOG2504|consen 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-KRALATGIAVSGTGVGTVVFPPLLKYLLSKYG 198 (509)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-HHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence 999999999999999998776 5888999999999999999988865 59999999999999999988887766 59
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc-CcchhHHHhhCChHHHHHHHHH-----------Hhc-CChhhHH---HHHHHHHHcc
Q psy4871 203 YMNYLTYSLIIPIIFTVTFMFM-PESPYFYAIKNQEGKAIESLKW-----------LRN-KTADQVQ---SELQIIKQNT 266 (494)
Q Consensus 203 w~~~f~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~-----------~~~-~~~~~~~---~~~~~~~~~~ 266 (494)
||+.+++.+.+.+-..+....+ |.+++-... .++..+.... ... .+..... .+....++..
T Consensus 199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (509)
T KOG2504|consen 199 WRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGP 275 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCC
Confidence 9999999888887666555444 323211000 0000000000 000 0000000 0000111111
Q ss_pred cc-c--ccccchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhh
Q psy4871 267 SK-N--VERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTY 342 (494)
Q Consensus 267 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~ 342 (494)
++ . ..+.....+..+.++.+.++.+.+.......++.....++|.+..+.+++. +.+....+.++..++++++.|+
T Consensus 276 ~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~ 355 (509)
T KOG2504|consen 276 DKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGL 355 (509)
T ss_pred ccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhh
Confidence 10 0 111111100012223344555555556566667788888899988888775 7888899999999999999999
Q ss_pred hhcccCc--hhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchh
Q psy4871 343 YIDRAGR--RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMK 420 (494)
Q Consensus 343 l~d~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 420 (494)
+.|+... +.+..++.++.+++.+.+... .+.+......+++++..+. +.......+.|+.+.+.-
T Consensus 356 laD~~~~~~~~~~~~~ll~~gl~~~~~p~~------------~~~~~l~~~~~~fG~~~g~-~~~l~~~i~~~~~g~~~l 422 (509)
T KOG2504|consen 356 LADKPGIRALVLFLLTLLIAGLARLFLPFA------------TTYVGLIVFSILFGFCVGS-FSSLTPVILVDLVGLEKL 422 (509)
T ss_pred hcCccccchHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcChhhc
Confidence 9999884 445555555555555444332 2344555555556555443 444554688999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 421 AVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 421 ~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
..+.|+...+..++..++|++.|++.|
T Consensus 423 ~~a~Gl~l~~~gi~~l~gpPiag~~~d 449 (509)
T KOG2504|consen 423 SNAYGLLLLFQGIGALVGPPIAGLLYD 449 (509)
T ss_pred chHHHHHHHHhHHHHHcCcccceeeee
Confidence 999999999999999999999999998
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=204.70 Aligned_cols=342 Identities=13% Similarity=0.069 Sum_probs=215.5
Q ss_pred HHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH---
Q psy4871 61 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM--- 137 (494)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--- 137 (494)
++.....+...|.+|.+.++ ++|.++.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~--~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 89 (396)
T TIGR00882 12 FLYFFIMSAYFPFFPIWLHD--VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYV 89 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455567777765433 6899999999999999999999999999999999999999987776665444322
Q ss_pred HH-----hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHH
Q psy4871 138 YS-----RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE---LSYMNYLTY 209 (494)
Q Consensus 138 ~a-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~---~~w~~~f~~ 209 (494)
+. +.+..+++.|++.|++.+...+....+..+..+ +++...+......++|.++++.+++. .+||+.|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~ 167 (396)
T TIGR00882 90 FGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWL 167 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHH
Confidence 11 123445677888999888888888777766533 23445566666667777777777654 499999999
Q ss_pred HHHHHHHHHHHhhc-cCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHH
Q psy4871 210 SLIIPIIFTVTFMF-MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAF 287 (494)
Q Consensus 210 ~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 287 (494)
.+++.++..+..+. .||+|+. ++. . +..+..+++.+..++++ ++++..+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~-------~~~---------------~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (396)
T TIGR00882 168 GSGFALILMLLLMFAKPKAPSS-------ATV---------------A----NALGANASAFSLKLALELFRQRKFWMFV 221 (396)
T ss_pred HHHHHHHHHHHHHHhCCCCchh-------hhh---------------h----cccccccCCCCHHHHHHHHcCCcHHHHH
Confidence 98888777655544 3443310 000 0 00000000111223455 5555443222
Q ss_pred HHHHHHHHHHHccchHhHHHhHHHHHHhc----CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHH
Q psy4871 288 VFMAFLAVFRAFTGVQSIIAYANTIFASS----ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 362 (494)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 362 (494)
...+.... .......+.+.++.+. +.+. ..+....+..+...++.+..+++.||+|+|+.+.++..+.++
T Consensus 222 l~~~~~~~-----~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l 296 (396)
T TIGR00882 222 LYVVGVAC-----VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSV 296 (396)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 21111111 1222333445554432 2222 234555566677788889999999999999998888877777
Q ss_pred HHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHH-HHHHHHHHHHHHHHh
Q psy4871 363 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAV-INILCTTLGLISYKL 441 (494)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~~~~i~~~i 441 (494)
...+.... .+.+..++..++.+.+..... .....+..+..|++.++++.+. .+....+|+.+++.+
T Consensus 297 ~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l 363 (396)
T TIGR00882 297 RIIGSSFA------------TTALEVVILKMLHAFEVPFLL-VGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL 363 (396)
T ss_pred HHHHHHhc------------CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 66554431 244444444455554433221 2233456777788888887776 578899999999999
Q ss_pred hhchhhhcC
Q psy4871 442 FFLMDKHIG 450 (494)
Q Consensus 442 ~~~l~~~~~ 450 (494)
.|++.|..|
T Consensus 364 ~G~l~~~~G 372 (396)
T TIGR00882 364 AGNMYDSIG 372 (396)
T ss_pred HHHHHHhcc
Confidence 999988444
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-23 Score=200.56 Aligned_cols=375 Identities=11% Similarity=0.097 Sum_probs=246.1
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
++|..++.........+..+++ +...+.+++ ++|+|..+.+++.++. ....+++++.|++.||+|||++++++.+
T Consensus 25 ~Rw~~lva~~~~~~~~g~~y~f-sv~s~~L~~---~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l 99 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFMYAF-NLISGAMQA---RYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT 99 (591)
T ss_pred chHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4777777666666666655433 345567775 9999999999998874 4455678889999999999999999999
Q ss_pred HHHHHHHHHHHH------hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHH-HHHhhhh
Q psy4871 128 ITTASWIIAMYS------RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILY-TYVLGSE 200 (494)
Q Consensus 128 ~~~i~~~~~~~a------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~ 200 (494)
++++++++++++ ++++.+++.|++.|+|.+...+.+...+.+|+| ++||++.++...+.++|.++ +++....
T Consensus 100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 689999999999999999999999999999997 67999999999999999975 5555444
Q ss_pred h--hhHHHHHHHHHHHHHHHHHh-hcc--CcchhHHHhhCChHHHHHHHHHHhcC-------------------------
Q psy4871 201 L--SYMNYLTYSLIIPIIFTVTF-MFM--PESPYFYAIKNQEGKAIESLKWLRNK------------------------- 250 (494)
Q Consensus 201 ~--~w~~~f~~~~~~~~~~~~~~-~~~--~esp~~l~~~~~~~~a~~~~~~~~~~------------------------- 250 (494)
+ +|+..|++.+++.++..++. .++ |+.|+|..++++.+++++..++.++.
T Consensus 179 ~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~y 258 (591)
T PTZ00207 179 FSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVF 258 (591)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHH
Confidence 4 78888888888777666544 333 55555543443333322221111100
Q ss_pred -------------Chh---------------------------------hHHHHHHHH-HHcc--cc-c--------c--
Q psy4871 251 -------------TAD---------------------------------QVQSELQII-KQNT--SK-N--------V-- 270 (494)
Q Consensus 251 -------------~~~---------------------------------~~~~~~~~~-~~~~--~~-~--------~-- 270 (494)
.+. +.+.+..+. +... .+ + +
T Consensus 259 l~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (591)
T PTZ00207 259 LPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYI 338 (591)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCC
Confidence 000 000000000 0000 00 0 0
Q ss_pred ---cccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc-CCCcch--h-HHHHHHHHHHHHhhhhhhh
Q psy4871 271 ---ERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFLPS--D-YISILFAIILLVSIFPSTY 342 (494)
Q Consensus 271 ---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~~~~~~~~~~~g~ 342 (494)
...++.+ +++ .-++++++..++..+.-......+.++.+.. |.+.+. . .+..+.++.+.+|++.+|+
T Consensus 339 ~P~~~~t~~q~l~~-----~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~ 413 (591)
T PTZ00207 339 APQFQETFIEGLKT-----ARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSY 413 (591)
T ss_pred CCCCcchHHHHHhc-----hhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHH
Confidence 0012333 332 3344566666666665666677778888777 653222 2 2678889999999999998
Q ss_pred hhcccCch--------hHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhccc
Q psy4871 343 YIDRAGRR--------VLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEY 414 (494)
Q Consensus 343 l~d~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (494)
+.....+| .+.+....++.++.+++.... +.....+..++.+++++..+. +....++|+
T Consensus 414 ~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~------------p~~~L~~~~~lvg~~~G~~~~-~~~~i~sel 480 (591)
T PTZ00207 414 FEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL------------PKAALPLPYFIAAFANGFMAA-TIALVTRTI 480 (591)
T ss_pred HHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC------------CccHhHHHHHHHHHHhhHhHH-HHHHHHHHH
Confidence 87222211 222222222444444444321 213456677777777777664 444889999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHH-HHhhhchhh
Q psy4871 415 FSSNMKAVSCAVINILCTTLGLIS-YKLFFLMDK 447 (494)
Q Consensus 415 ~p~~~r~~~~g~~~~~~~~~~~i~-~~i~~~l~~ 447 (494)
|. ++-|+-.-+.....-+|..+. -.++|.++|
T Consensus 481 Fg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd 513 (591)
T PTZ00207 481 FA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYT 513 (591)
T ss_pred hc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99 778888888888888888777 568888887
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-24 Score=205.67 Aligned_cols=338 Identities=12% Similarity=0.045 Sum_probs=202.7
Q ss_pred ccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHH---HhhHH
Q psy4871 67 FAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY---SRSVL 143 (494)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---a~~~~ 143 (494)
.+...|.+|.+.++ ++|+++.+.|++.+++.++..++++++|+++||+|||++++++..+.+++...... ++...
T Consensus 26 ~~~~~~~~~~~l~~--~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (420)
T PRK09528 26 WSSWFSFFPIWLHD--INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQ 103 (420)
T ss_pred HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666655443 68999999999999999999999999999999999999998877666555432211 11111
Q ss_pred -HHHHHHHHHHhHhhhhhhhhhhheecccC--CCCchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHH
Q psy4871 144 -GLYVMRTLQGFSMAAIYVISPMYLGEISE--TSIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTYSLIIPIIF 217 (494)
Q Consensus 144 -~l~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~~~~ 217 (494)
......++.++..+.........+.++.+ .+++++..+......++|..+++.+++.+ +|++.|++.++++++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~ 183 (420)
T PRK09528 104 YNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALIL 183 (420)
T ss_pred HHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHH
Confidence 01122222333333333333333333332 24567777777777788888888777663 8999999988887776
Q ss_pred HHHhhccC-cchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHH
Q psy4871 218 TVTFMFMP-ESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAV 295 (494)
Q Consensus 218 ~~~~~~~~-esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 295 (494)
.+..++++ |.++....++ + + + ..++.......++ ++++..+...+.......
T Consensus 184 ~~~~~~~~~~~~~~~~~~~----------------------~--~-~-~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~ 237 (420)
T PRK09528 184 LVLLFFAKPDAPSTAKVAN----------------------A--L-G-ANASAVSLKDALALLKLPKFWFLVLYVIGVAC 237 (420)
T ss_pred HHHHhcccccccchhhhcc----------------------c--h-h-cccccccHHHHHHHccCCCeEeehHHHHHHHH
Confidence 66665543 3221000000 0 0 0 0000001112333 445444322221111111
Q ss_pred HHHccchHhHHHhHHHHHHh----cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHH
Q psy4871 296 FRAFTGVQSIIAYANTIFAS----SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLY 370 (494)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (494)
. ......+.|.++.+ .+.+. ..+....+..+...++.++.+++.||+|+|+.+..+..+.++..+++.+.
T Consensus 238 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~ 312 (420)
T PRK09528 238 F-----YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA 312 (420)
T ss_pred H-----HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc
Confidence 1 11222233443332 23222 33455666777788999999999999999999888888777776665542
Q ss_pred HHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHH-HHHHHHHHHHHHHHhhhchhhhc
Q psy4871 371 YYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAV-INILCTTLGLISYKLFFLMDKHI 449 (494)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~~~~i~~~i~~~l~~~~ 449 (494)
++.+..+....+.+.+..... +....++.+.+|++.+++..+. .++...+|.++++.+.|++.|..
T Consensus 313 ------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~ 379 (420)
T PRK09528 313 ------------TGPLEVSILKLLHAFEVPFLL-VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI 379 (420)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 234444444444444443322 2334677888999999888766 57788999999999999999854
Q ss_pred C
Q psy4871 450 G 450 (494)
Q Consensus 450 ~ 450 (494)
|
T Consensus 380 G 380 (420)
T PRK09528 380 G 380 (420)
T ss_pred C
Confidence 4
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=203.47 Aligned_cols=378 Identities=10% Similarity=0.008 Sum_probs=230.6
Q ss_pred HHHHHHHHHHhhhcccchhhHH-HhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh-hCchhHHHhhHHHHH
Q psy4871 53 EAHACIAAFTTGMSFAWSAPVL-EELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITT 130 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~ 130 (494)
+..+++..+...+......+.+ ..+. + ++|++..+.+++.+.+.....+..+++|+++|| +|||++++++.++++
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~-~--~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFV-K--QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 3334444455555554444444 4445 3 899999999999999998998999999999999 999999999999999
Q ss_pred HHHHHHHHHhhHHH-HHHHHHHHHhHhhhhhhhhhhheecccCCCC--chhHHHHHHHHHHHHHHHHHHhhhh----hhh
Q psy4871 131 ASWIIAMYSRSVLG-LYVMRTLQGFSMAAIYVISPMYLGEISETSI--RGTIGTLFQISCHLGILYTYVLGSE----LSY 203 (494)
Q Consensus 131 i~~~~~~~a~~~~~-l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~----~~w 203 (494)
+++++++++++... ++++|+++|+|.|...+...+++.|++|+++ |+++.+++..+.++|.+++|.++++ +||
T Consensus 93 ~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw 172 (489)
T PRK10207 93 IGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY 172 (489)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 99999999876544 5589999999999999999999999998774 5778999999999999888877765 599
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcchhHHH--hhCChHHHHHHH-------------HHHhcCChhhHHHHH-HHH---H-
Q psy4871 204 MNYLTYSLIIPIIFTVTFMFMPESPYFYA--IKNQEGKAIESL-------------KWLRNKTADQVQSEL-QII---K- 263 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~~~~~~~~esp~~l~--~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~-~~~---~- 263 (494)
|+.|++.++..++..+...+.++..+... .++++.+....+ .+..+ .. ...... ... .
T Consensus 173 ~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~i~~ 250 (489)
T PRK10207 173 SVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMH-NV-EVANLVLIVLSIVVT 250 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHh-hh-hHHHHHHHHHHHHHH
Confidence 99999876544333333333332111000 000001100000 00000 00 000000 000 0
Q ss_pred -HcccccccccchhhhcCcchHHHHHHHHHHH--HHHHccchHhHHHhHHHHHHh-c-----CCCcchhHHHHHHHHHHH
Q psy4871 264 -QNTSKNVERTNFREFMGRSNMKAFVFMAFLA--VFRAFTGVQSIIAYANTIFAS-S-----ETFLPSDYISILFAIILL 334 (494)
Q Consensus 264 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~ 334 (494)
.-..+. .+.+ +.+++ +.+..+.+. ....+..+.......+.+.++ . |+...+.....+..+..+
T Consensus 251 ~~f~~~~-~~~~-~~~r~-----r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~ii 323 (489)
T PRK10207 251 IIFFREA-FKLD-KTGRN-----KMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVV 323 (489)
T ss_pred HHHHHHH-hcCC-HHHHH-----HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHH
Confidence 000000 0000 01222 221111111 111111122222333333332 1 222345556666777777
Q ss_pred HhhhhhhhhhcccCchh-------HHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccch
Q psy4871 335 VSIFPSTYYIDRAGRRV-------LFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLF 407 (494)
Q Consensus 335 ~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (494)
+.+++.+++.||+++|+ .+.+++++.+++.+.+.......... +...+.|+.+...++.+.+.... .|..
T Consensus 324 i~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~i~~~~l~g~Ge~~~-~~~g 400 (489)
T PRK10207 324 VASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADA--QGLTSPWFIVLVYLFQSLGELFI-SALG 400 (489)
T ss_pred HHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCccCHHHHHHHHHHHHHHHHHH-hHHH
Confidence 88888899999999886 36667777776665443211100000 01223455566666777776654 4555
Q ss_pred hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhch
Q psy4871 408 TPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLM 445 (494)
Q Consensus 408 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 445 (494)
..++.+..|++.++.++|+.+....+|+.++..+....
T Consensus 401 ~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 401 LAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58888999999999999999999999999998887655
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=194.02 Aligned_cols=341 Identities=14% Similarity=0.130 Sum_probs=220.3
Q ss_pred HHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhh-----Cchh-HHHhhHHHHHH
Q psy4871 58 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-----GRKW-SLLMTGPITTA 131 (494)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~i 131 (494)
...+..|+..++....+|.+.+ +.|++.+++|++..+... .+..+++|+++||+ |||| +++++.++.++
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~---~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMT---VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 4456678888888899998886 889999999999777776 58999999999999 8765 78888888888
Q ss_pred HHHHHHHH---hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-----hhh
Q psy4871 132 SWIIAMYS---RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSY 203 (494)
Q Consensus 132 ~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~~w 203 (494)
+..+.++. .+++.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.++.. .+|
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw 160 (402)
T PRK11902 81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW 160 (402)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence 88887776 3578888888888888888999999999999999999999999999999999988875543 489
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcc
Q psy4871 204 MNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRS 282 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 282 (494)
|..|++.++..++..+..+++||+++.. ++.++ .. +..+.++++ ++++.
T Consensus 161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~---------------~~------------~~~~~~~~~l~~~~~ 210 (402)
T PRK11902 161 GNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRS---------------LG------------EAVVGPLRDFFSRRG 210 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccc---cccch---------------hH------------HHHHHHHHHHHhCcC
Confidence 9999998888776666556677764210 00000 00 001112444 44444
Q ss_pred hHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHH-HHHHHHhhhhhhhhhcccCchhHHHHhhHHH
Q psy4871 283 NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILF-AIILLVSIFPSTYYIDRAGRRVLFLVSSAGC 360 (494)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 360 (494)
.+. .+....+..... ........+.+.++.|.+. +.+...... .++.+++.++++++.||+++|+.+..+..+.
T Consensus 211 ~~~-~l~~~~l~~~~~---~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~ 286 (402)
T PRK11902 211 AWA-LLLLIVLYKLGD---AFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQ 286 (402)
T ss_pred HHH-HHHHHHHHHhHH---HHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 332 222222211111 1111122233334456553 233333333 3457899999999999999998877666665
Q ss_pred HHHHHHHHHHHHhhhccccCCCccchHhHHHHHH----HHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHH
Q psy4871 361 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISL----LGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGL 436 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~ 436 (494)
.+..+.+...... .++.+.......+ .+..++. ..+....++.+.+|.+. .++.+....++..
T Consensus 287 ~l~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~ 353 (402)
T PRK11902 287 AVSNLGYWVLAVT--------PKHLWTMALAIGIENLCGGMGTAA-FVALLMALCNRSFSATQ----YALLSALASVGRV 353 (402)
T ss_pred HHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCcHHH----HHHHHHHHHHHHH
Confidence 5544333221111 1122333333222 2222222 22334456666666554 4555666677777
Q ss_pred HHHHhhhchhhhcC
Q psy4871 437 ISYKLFFLMDKHIG 450 (494)
Q Consensus 437 i~~~i~~~l~~~~~ 450 (494)
+++.+.|.+.|.-|
T Consensus 354 ~~~~~~G~l~~~~G 367 (402)
T PRK11902 354 YVGPTSGYLVEAYG 367 (402)
T ss_pred HHHHHHHHHHHHhC
Confidence 67778888888443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=182.24 Aligned_cols=342 Identities=15% Similarity=0.125 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHH
Q psy4871 52 SEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTA 131 (494)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i 131 (494)
....+....++.|+......+.+|++++ .++++..+.+++...++.|+.+++++.|++.+|+|+|+.++.|+.++++
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~---~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~av 90 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAV 90 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHH---HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445566677888988899999999995 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-------
Q psy4871 132 SWIIAM---YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL------- 201 (494)
Q Consensus 132 ~~~~~~---~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~------- 201 (494)
++.+.. -..++..++++-++.|.|.+...+.+..+++...++++..+.+.+.+..+++|.+++|++++.+
T Consensus 91 g~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~ 170 (422)
T COG0738 91 GAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVAL 170 (422)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Confidence 999884 4568999999999999999999999999999999998889999999999999999999998662
Q ss_pred ----------------hhHHHHHHHHHHHHHHHHHhhcc--CcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHH
Q psy4871 202 ----------------SYMNYLTYSLIIPIIFTVTFMFM--PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIK 263 (494)
Q Consensus 202 ----------------~w~~~f~~~~~~~~~~~~~~~~~--~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 263 (494)
.|+++|...+...+++.+..... |+.+. .+ ++
T Consensus 171 ~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----------------------~~-~~------ 220 (422)
T COG0738 171 TMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----------------------AA-PS------ 220 (422)
T ss_pred ccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----------------------cc-cc------
Confidence 36777777777666665554333 33210 00 00
Q ss_pred Hcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhh
Q psy4871 264 QNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPS 340 (494)
Q Consensus 264 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 340 (494)
+.+..+....+ ++++..+ ... +..++..........|++.++.+ .|.+. ++.........+.++|++++
T Consensus 221 ---~~~~~~~~~~~l~~~~~~~-~gv----l~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig 292 (422)
T COG0738 221 ---LGASGSAGLSSLFQNKHLR-LGV----LAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIG 292 (422)
T ss_pred ---ccccccchHHHHHhChHHH-HHH----HHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111112344 5554333 222 22333333456778888888887 55554 67788888999999999999
Q ss_pred hhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchh
Q psy4871 341 TYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMK 420 (494)
Q Consensus 341 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 420 (494)
.++..|+...+.+.+..++..+.++...+. +....+....+.+.+.+.. .|..++...+..| +.
T Consensus 293 ~~lm~~~~~~k~Laf~a~~~ill~~~~~l~-------------~g~v~~~~l~~ig~F~sim-fPTIfslal~~l~-~~- 356 (422)
T COG0738 293 SALMSRIKPEKYLAFYALIAILLLLAVALI-------------GGVVALYALFLIGLFNSIM-FPTIFSLALKNLG-EH- 356 (422)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-------------cChHHHHHHHHHHHHhHHH-HHHHHHHHHhccC-cc-
Confidence 999999998888877766555555544443 2234455566666666654 4666788888888 33
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhchhhhcC
Q psy4871 421 AVSCAVINILCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 421 ~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~ 450 (494)
....|..-.+.-+|+++.|++.|++.|+.|
T Consensus 357 ts~~s~~l~maivGGAiiP~l~G~i~d~~g 386 (422)
T COG0738 357 TSVGSGLLVMAIVGGAIIPPLQGVIADMFG 386 (422)
T ss_pred ccccceeeeeheecchHHHHHHHHHHHhhh
Confidence 444455566678899999999999999444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=173.76 Aligned_cols=344 Identities=15% Similarity=0.092 Sum_probs=259.9
Q ss_pred HHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHH
Q psy4871 50 FGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 129 (494)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 129 (494)
|+.+..+.+..+...-..+...|+++++.+ |+++|.+..|+++++..+...+.+++..+++.|+|.++.+..++++.
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~---~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli 87 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQ---DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLI 87 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH
Confidence 555555566666667788889999999996 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----h-hhH
Q psy4871 130 TASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----L-SYM 204 (494)
Q Consensus 130 ~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~-~w~ 204 (494)
.++.++-... +.+.++.+-.+.|.|.+......+.++-+.+|++ -+..++++....++|..+++.+... . +||
T Consensus 88 ~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~ 165 (395)
T COG2807 88 AAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR 165 (395)
T ss_pred HHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence 9999998887 7888999999999999999999999999999875 8999999999998888777665543 3 799
Q ss_pred HHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcch
Q psy4871 205 NYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSN 283 (494)
Q Consensus 205 ~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 283 (494)
....+-+.++++.++.++.-. .|. + ..+.+.+..+-.. ++++.-
T Consensus 166 ~aL~~WAl~allAl~~WlPq~--~r~--------------------~-------------~~~~~~~~~~~~~vw~~~~a 210 (395)
T COG2807 166 GALGFWALLALLALLIWLPQA--LRE--------------------Q-------------AASIATKLVSVRKVWRSPLA 210 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhhc--ccc--------------------c-------------ccccccccccccccccCchh
Confidence 999999999888877654321 100 0 0000111111222 444433
Q ss_pred HHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhccc-CchhHHHHhhHHHH
Q psy4871 284 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCS 361 (494)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~ 361 (494)
| ...+++..+...++....|+|.++.+.|.+. +++....+..+..++.+++...+.+|. ++|+........+.
T Consensus 211 W-----~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l 285 (395)
T COG2807 211 W-----QVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLML 285 (395)
T ss_pred H-----HHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3 3444444444557889999999999999986 788888899999999999999999975 46777777777777
Q ss_pred HHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhccc-CCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4871 362 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEY-FSSNMKAVSCAVINILCTTLGLISYK 440 (494)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~r~~~~g~~~~~~~~~~~i~~~ 440 (494)
++.+.+.+... ... +..+++++.+.+..+ |+....+... -.++..+.-.|+.+.++++-..++|+
T Consensus 286 ~G~~G~~~~P~-----------~~~--~lw~~llG~G~G~~F-~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~ 351 (395)
T COG2807 286 VGLVGLLLAPG-----------QLP--ILWALLLGLGQGGAF-PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW 351 (395)
T ss_pred HHHHHHHHhhh-----------hHH--HHHHHHHhCccchHH-HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence 77776665421 111 222455555544433 3433444444 34566788889999999999999999
Q ss_pred hhhchhhhcCCC
Q psy4871 441 LFFLMDKHIGKT 452 (494)
Q Consensus 441 i~~~l~~~~~~~ 452 (494)
++|++.|..|..
T Consensus 352 l~G~lhDa~gsw 363 (395)
T COG2807 352 LFGFLHDATGSW 363 (395)
T ss_pred hHhHHHHhcCCh
Confidence 999999954443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-22 Score=195.36 Aligned_cols=380 Identities=12% Similarity=0.041 Sum_probs=236.0
Q ss_pred HHHHHHhhhcccchhhHHHhhhcCCCC--CCCCCCchhHHHHHHHHhHhhhhhchHhhhhh-hCchhHHHhhHHHHHHHH
Q psy4871 57 CIAAFTTGMSFAWSAPVLEELLSKESP--IPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASW 133 (494)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~ 133 (494)
.+..++..+......+.+|.+.++ + +|++..+.+++.+.+.+++.++++++|+++|| +|||++++++.++.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~L~~yl~~--~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~ 93 (475)
T TIGR00924 16 FFVELWERFSYYGMQGILAVYLVQ--QAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGH 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 344555555555566667666433 4 89999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCC---chhHHHHHHHHHHHHHHHHHHhhhh----hhhHHH
Q psy4871 134 IIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI---RGTIGTLFQISCHLGILYTYVLGSE----LSYMNY 206 (494)
Q Consensus 134 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~ 206 (494)
++.+++++++.++++|++.|+|.|...+...++++|++|+++ |+.+.+++..+.++|.++|+.++++ .+|++.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~ 173 (475)
T TIGR00924 94 FMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVG 173 (475)
T ss_pred HHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 999999999999999999999999999999999999998764 8889999999999999999988876 489999
Q ss_pred HHHHHHHHHHHHHHhhccC----cchhHHHhhCChHHHHHHHH---------------HHhcCChhhHHHHHH-----HH
Q psy4871 207 LTYSLIIPIIFTVTFMFMP----ESPYFYAIKNQEGKAIESLK---------------WLRNKTADQVQSELQ-----II 262 (494)
Q Consensus 207 f~~~~~~~~~~~~~~~~~~----esp~~l~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~~~-----~~ 262 (494)
|.+.++..++..+..++.+ +.|+. ..+.+.++...... +... +......-.. ..
T Consensus 174 f~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (475)
T TIGR00924 174 FNLAAVGMVIGLLTFFAGRHMLRDIGSV-PDPLSGQGKTYGKLLLALLAALALVFFCAWLMH-HVVIANILLMTVTLAVI 251 (475)
T ss_pred HHHHHHHHHHHHHHHHHcccccccCCCC-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHH
Confidence 9998865555444333332 22210 00000010000000 0000 0000000000 00
Q ss_pred HHcccccccccchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-c-----CCCcchhHHHHHHHHHHHHh
Q psy4871 263 KQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-S-----ETFLPSDYISILFAIILLVS 336 (494)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~ 336 (494)
-...+.. .+....+..+++.. . ++.+++.....+..+.......+.+.++ . ++....++...+.++..++.
T Consensus 252 ~~~~~~~-~~~~~~~~~~~~~~-~-~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~ 328 (475)
T TIGR00924 252 IFFFRLA-FKPRLDAVARNKMY-A-YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVG 328 (475)
T ss_pred HHHHHHH-HhccCCHHHHhHHH-H-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHH
Confidence 0000000 00000000000111 1 1112221111111122333333433332 1 12224667777777777777
Q ss_pred hhhhhhhhcccCc-----hhH--HHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhh
Q psy4871 337 IFPSTYYIDRAGR-----RVL--FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 409 (494)
Q Consensus 337 ~~~~g~l~d~~g~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (494)
.++..++..|++| +.. +.++.++.+++.+.+.+..... +. ....+.++.+...++.+.+... ..|...+
T Consensus 329 ~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~-~~--~~~~s~~~~i~~~~~~~~ge~~-~~p~~~~ 404 (475)
T TIGR00924 329 SPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFA-DA--GGLTSPWFMVLIYLFQTLGELM-ISPLGLS 404 (475)
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc-CC--CCccCHHHHHHHHHHHHHHHHH-HhHHHHH
Confidence 7665544333333 233 3667777777776665432211 10 0123556666777777777654 5567779
Q ss_pred hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 410 LLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 410 ~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
+..+..|++.||+.+|+......+|..+++.+.....+
T Consensus 405 ~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~ 442 (475)
T TIGR00924 405 WWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV 442 (475)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999888776644
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=198.26 Aligned_cols=327 Identities=13% Similarity=0.078 Sum_probs=218.5
Q ss_pred HHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh----hCc-hhHHHhhHHHHHHHHHHHHHHhh------H
Q psy4871 74 LEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR----IGR-KWSLLMTGPITTASWIIAMYSRS------V 142 (494)
Q Consensus 74 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~~~~i~~~~~~~a~~------~ 142 (494)
.+.+. + ++|+++.+.|++.++..+..++..|+.|+++|| +|| |+.++.+....+++.+++.+.++ .
T Consensus 23 ~~~~~-~--~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 23 LFFYT-D--VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHH-H--ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 34555 4 889999999999999999999999999999997 687 45677888888888888877653 4
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhheeccc-CCCCchhHHHHHHHHHHHHHHHHHHhhh-----------hhhhHHHHHHH
Q psy4871 143 LGLYVMRTLQGFSMAAIYVISPMYLGEIS-ETSIRGTIGTLFQISCHLGILYTYVLGS-----------ELSYMNYLTYS 210 (494)
Q Consensus 143 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~-----------~~~w~~~f~~~ 210 (494)
..+++.+++.+++.+...+...++..|.. ++++|++..++...+..+|.++++.+.. ..+||+.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~ 179 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL 179 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 56778889999998888788888999987 4678999999988887777665543321 24799999998
Q ss_pred HHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHH
Q psy4871 211 LIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFV 288 (494)
Q Consensus 211 ~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 288 (494)
+++.++..+.. +..+|.++. + ++. +.++.+.+..+++ ++++.++. ..
T Consensus 180 ~~l~~~~~~~~~~~~~e~~~~-----~----------------~~~---------~~~~~~~~~~~~~l~~~~~~~~-~~ 228 (437)
T TIGR00792 180 ALIGVVSLIICFFGTKERYSE-----I----------------PKN---------IEKKLSLKQIFKALFKNDQLLI-LC 228 (437)
T ss_pred HHHHHHHHHHHHcCCEecCCC-----C----------------Ccc---------cccCCCHHHHHHHHhCCHHHHH-HH
Confidence 88877776554 566765310 0 000 0000001112334 44443332 22
Q ss_pred HHHHHHHHHHccchHhHHHhHHHHHHhc-CCCcchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHH
Q psy4871 289 FMAFLAVFRAFTGVQSIIAYANTIFASS-ETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIA 367 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 367 (494)
...++..+ +......+.+.+.+.. +.....+....+..++.+++.++.+++.||+|+|+.+..+..+.+++.+.+
T Consensus 229 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 229 LAYLFYNL----AFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF 304 (437)
T ss_pred HHHHHHHH----HHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 22111111 1222222333333322 211234455566778888999999999999999999988887777766655
Q ss_pred HHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCC-------cchhhHHHHHHHHHHHHHHHHHHH
Q psy4871 368 GLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS-------SNMKAVSCAVINILCTTLGLISYK 440 (494)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~i~~~ 440 (494)
.+. ..+.+...+..++.+++.+.. .+..+++.+|..+ ++.+|.+.|+.+....++..+++.
T Consensus 305 ~~~-----------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~ 372 (437)
T TIGR00792 305 FFA-----------GSNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGF 372 (437)
T ss_pred HHc-----------chhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 432 112233344444555554443 3455677777754 556899999999999999999999
Q ss_pred hhhchhhhcC
Q psy4871 441 LFFLMDKHIG 450 (494)
Q Consensus 441 i~~~l~~~~~ 450 (494)
+.|.+.+..|
T Consensus 373 i~g~ll~~~G 382 (437)
T TIGR00792 373 LVGLILGIIG 382 (437)
T ss_pred HHHHHHHHcC
Confidence 9999988433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-24 Score=190.52 Aligned_cols=321 Identities=15% Similarity=0.061 Sum_probs=221.7
Q ss_pred CCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhh
Q psy4871 84 IPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVIS 163 (494)
Q Consensus 84 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~ 163 (494)
.+-+++++|++.+.+.+.+.+..++.|.+.||+|+|..+++|.+++..++++.++.++++.++++|.+||+|.+...+++
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheecccCCCC-chhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChH
Q psy4871 164 PMYLGEISETSI-RGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEG 238 (494)
Q Consensus 164 ~~~i~e~~~~~~-r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~ 238 (494)
.+++++.+|+++ |++++|+.-.+.++|.++||.+|+. .|.+.+|.+.++++++-..+.+++-|..+
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~--------- 251 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE--------- 251 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc---------
Confidence 999999999765 7999999999999999999999987 48999999999999988877765533210
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHH-HHHhc
Q psy4871 239 KAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANT-IFASS 316 (494)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 316 (494)
.+++ ...+..++++ ++++..+. ..+...+.+.+ ....---++. ..++.
T Consensus 252 ------------~~~~-------------~~~~~~~~~~Ll~dP~I~~----~agai~~~n~~-lafLePtlslwm~e~m 301 (464)
T KOG3764|consen 252 ------------MDPD-------------STEQGTPMWSLLMDPYILL----IAGAITFSNSS-LAFLEPTLSLWMLETM 301 (464)
T ss_pred ------------cCcc-------------ccccCccHHHHHhCchHhh----hhcchhhccch-HHHhCcccHHHHHHhc
Confidence 0000 0112233444 44443221 11111111111 1111111122 23333
Q ss_pred CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccC--chhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHH
Q psy4871 317 ETFL-PSDYISILFAIILLVSIFPSTYYIDRAG--RRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSIS 393 (494)
Q Consensus 317 ~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (494)
..+. ..+...+...+...++..+.|.+.||++ |......+++..+.++..+.+..... ..|.......
T Consensus 302 ~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~---------~L~vp~~~l~ 372 (464)
T KOG3764|consen 302 FTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA---------QLWVPNFGLG 372 (464)
T ss_pred cCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH---------HHhhhhHHHH
Confidence 3222 4556667788888999999999999999 54344444444444444333332111 2233333333
Q ss_pred HHHHHhhcccccchhhhhcccCCcc---hhhHHHHHHHHHHHHHHHHHHHhhhchhhhcCCCH
Q psy4871 394 LLGVFFNLGFGPLFTPLLSEYFSSN---MKAVSCAVINILCTTLGLISYKLFFLMDKHIGKTF 453 (494)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 453 (494)
+.+........|.. .+..+.-..+ ..|...++......+|.++||.+.|.+.+..|.+.
T Consensus 373 ~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~w 434 (464)
T KOG3764|consen 373 FGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEW 434 (464)
T ss_pred HHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHH
Confidence 33333333344544 3344433333 67899999999999999999999999998555443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=191.17 Aligned_cols=319 Identities=13% Similarity=0.107 Sum_probs=228.2
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHhHhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS-----RSVLGLYVMRTLQGFSMA 157 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a-----~~~~~l~~~r~l~G~~~g 157 (494)
+..-|+...+++..+..+...+.++++|.++||+.||++++.+.++.++..++.++. .+.+.+++.-++.|++.+
T Consensus 39 ~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a 118 (524)
T PF05977_consen 39 QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSA 118 (524)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHH
Confidence 445588899999999999999999999999999999999999998877766554432 378899999999999999
Q ss_pred hhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHh
Q psy4871 158 AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAI 233 (494)
Q Consensus 158 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~ 233 (494)
...|+..+++.|..|+++...++++.+...++..++||.+++. +|-.+.|.+.++..++..+....++..+.
T Consensus 119 ~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---- 194 (524)
T PF05977_consen 119 FFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---- 194 (524)
T ss_pred HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----
Confidence 9999999999999999999999999999988888888877766 47778888887766655444444332110
Q ss_pred hCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHH
Q psy4871 234 KNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTI 312 (494)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (494)
+++...+.. . +.-+..++- ..++..+ ..++...+..+. ...+...+|.+
T Consensus 195 -----------------~~~~~~e~~---~-----~~l~~G~ryv~~~~~l~-~~l~~~~~~~l~----~~a~~aLlPl~ 244 (524)
T PF05977_consen 195 -----------------PSSLPRERF---F-----SALREGLRYVRSSPPLR-SVLLRSFLFNLF----ASAVWALLPLF 244 (524)
T ss_pred -----------------ccccchhhh---h-----hhHHHHHHHHhcchHHH-HHHHHHHHHHHh----hhHHHHhhhHH
Confidence 000000000 0 001112222 1222222 222222221111 12334456776
Q ss_pred HHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHH
Q psy4871 313 FAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFL 390 (494)
Q Consensus 313 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (494)
.++ .+.+. .-+++....+++.++|.++.+++.+|+++++++..+.++.+++++.+++. .+.+...+
T Consensus 245 a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~------------~~~~~~~~ 312 (524)
T PF05977_consen 245 ARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS------------PSFWLALI 312 (524)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc------------hHHHHHHH
Confidence 654 33332 44567778899999999999999999999888888888888877776663 34555566
Q ss_pred HHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 391 SISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
.+++.|.+...... ...+...+..|++.||+++++..+....+..+|..+.|.+.+.
T Consensus 313 ~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 313 ALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH 369 (524)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666554333 3447888999999999999999999999999999999999983
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=181.24 Aligned_cols=350 Identities=9% Similarity=0.036 Sum_probs=220.6
Q ss_pred HHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHH--HHHHHHhHhhhhhch-HhhhhhhCchhHHHhhHHHH
Q psy4871 53 EAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWV--VAIIEIGNYLSPIPA-GMLVNRIGRKWSLLMTGPIT 129 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~~~~~i~~~~~-g~l~dr~Grr~~l~~~~~~~ 129 (494)
.+.+...++..|...+...|.+|.+.+ +.|.+.+++|++ .+++.+...+.++++ ++..||+||||..++...+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~---~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~ 79 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR---EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCL 79 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHH
Confidence 344556678889999999999999996 889999999997 467788888888888 55799999998876555332
Q ss_pred -HHHHHHHH-H--Hhh-HHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhh----hh
Q psy4871 130 -TASWIIAM-Y--SRS-VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG----SE 200 (494)
Q Consensus 130 -~i~~~~~~-~--a~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~----~~ 200 (494)
+++....+ + ..+ ...++..-++.++..+...+....+..|..++++++...+....+..+|.++++... ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~ 159 (390)
T TIGR02718 80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK 159 (390)
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 1 222 334445555666777777788888888999888888888888888888888888544 34
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hc
Q psy4871 201 LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FM 279 (494)
Q Consensus 201 ~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 279 (494)
++||..|++.+++.++..+..++++|+++ ++++.+ +.+..++++ ++
T Consensus 160 ~gw~~~f~~~a~l~~~~~~~~~~~~~~~~---------------------~~~~~~------------~~~~~~~~~~l~ 206 (390)
T TIGR02718 160 FGQRPAFLLVACVPLASLVCVLWLKDRAV---------------------ASPEAP------------LARRASLFRFFR 206 (390)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHcCCCCc---------------------Cccccc------------hhhHHHHHHHHc
Confidence 69999999999888776665555544321 000000 000112344 55
Q ss_pred CcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHH-HHHHHhhhhhhhhhcccCchhHHHHhh
Q psy4871 280 GRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFA-IILLVSIFPSTYYIDRAGRRVLFLVSS 357 (494)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~ 357 (494)
++..+.... ..++... .......+.+.++.+.|++. +.+......+ ...+++.++.|++.||+|+|+.+..+.
T Consensus 207 ~~~~~~~~~-~~~l~~~----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~ 281 (390)
T TIGR02718 207 RPLAWSLLA-LALLSAM----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV 281 (390)
T ss_pred CcCHHHHHH-HHHHHHH----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 544332222 2222211 13344456677777777764 3444444444 456677889999999999999888776
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCc-chhhHHHHHHHHHHHHHHH
Q psy4871 358 AGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS-NMKAVSCAVINILCTTLGL 436 (494)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~~~~~ 436 (494)
.+.++..+......... .....+.......+.++..+.... ..++...+..++ +.+++.+++.+...++|..
T Consensus 282 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~ 354 (390)
T TIGR02718 282 GLAGSLALLWFAQAAFW------LAPGIAVAWSCSAFGSLITGITSV-AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGEL 354 (390)
T ss_pred HHHHHHHHHHHHHHHcc------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcccchHHHHHHHHHHHHHHHH
Confidence 65533322222111000 001111112222222223333322 333455555555 7899999999999999999
Q ss_pred HHHHhhhchhhhcC
Q psy4871 437 ISYKLFFLMDKHIG 450 (494)
Q Consensus 437 i~~~i~~~l~~~~~ 450 (494)
++|.+.|.+.+..|
T Consensus 355 ~g~~~~G~l~~~~G 368 (390)
T TIGR02718 355 IASSIAGYLTDRFG 368 (390)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999987544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=178.59 Aligned_cols=354 Identities=14% Similarity=0.134 Sum_probs=225.4
Q ss_pred ccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhh----hhCchhHHHhh-HHHHHHHHHHHHHHhh
Q psy4871 67 FAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN----RIGRKWSLLMT-GPITTASWIIAMYSRS 141 (494)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~~-~~~~~i~~~~~~~a~~ 141 (494)
.+...+.++.+.+ ++|.++...+++..+..+...+.+++.|+++| |+|||+.++++ .....++.++.+++++
T Consensus 20 ~~l~~~~l~~yl~---~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~ 96 (477)
T TIGR01301 20 WALQLSLLTPYVQ---ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD 96 (477)
T ss_pred HHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence 3334454544553 88999999999999999999999999999999 59999988875 6666666677777665
Q ss_pred HH-----------------HHHHHHHHHHhHhhhhhhhhhhheecccCCCCc--hhHHHHHHHHHHHHHHHHHHhhhhh-
Q psy4871 142 VL-----------------GLYVMRTLQGFSMAAIYVISPMYLGEISETSIR--GTIGTLFQISCHLGILYTYVLGSEL- 201 (494)
Q Consensus 142 ~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~~- 201 (494)
.+ .++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++++.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~ 176 (477)
T TIGR01301 97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSG 176 (477)
T ss_pred hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 233333444557788888899999999998865 6899999999999999999887642
Q ss_pred ------------------hhHHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHH
Q psy4871 202 ------------------SYMNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQII 262 (494)
Q Consensus 202 ------------------~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 262 (494)
+.|..|++.++..++..+.. +..+|.|... .++.++ + ..++ .
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~---~~~~--~---------- 237 (477)
T TIGR01301 177 LYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--S---EAAP--P---------- 237 (477)
T ss_pred HHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--h---hccc--c----------
Confidence 45778888888777766555 6778865210 000000 0 0000 0
Q ss_pred HHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCC--c-------c----hhHHHHH
Q psy4871 263 KQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETF--L-------P----SDYISIL 328 (494)
Q Consensus 263 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~----~~~~~~~ 328 (494)
++......+++ ++.-+...+.+.......++.+.+...+..|.+.+..+.-+. . + ..+....
T Consensus 238 ----~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~ 313 (477)
T TIGR01301 238 ----SKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLML 313 (477)
T ss_pred ----cccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHH
Confidence 00000111222 111111112222222223333334556666666655432111 0 1 2234455
Q ss_pred HHHHHHHhhhhhhhhhcccCc-hhHHHHhhHHHHHHHHHHHHHHHhhhcc-ccC-----CCcc---chHhHHHHHHHHHH
Q psy4871 329 FAIILLVSIFPSTYYIDRAGR-RVLFLVSSAGCSLFSFIAGLYYYVTIEL-QYE-----IPYT---SWVPFLSISLLGVF 398 (494)
Q Consensus 329 ~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~---~~~~~~~~~~~~~~ 398 (494)
+++...+.+++..++.+|+|+ |++...+.++.++++....+......+. ..+ ...+ .+..++.+...|+.
T Consensus 314 ~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~ 393 (477)
T TIGR01301 314 NSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIP 393 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHH
Confidence 666666777788889999985 6777888888888877776553211000 000 0000 25556666677777
Q ss_pred hhcccccchhhhhcccCCc--chhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 399 FNLGFGPLFTPLLSEYFSS--NMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~--~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
+.. ...++++++++..++ +..|..+|+.|.+..+.+++.....|.+.+
T Consensus 394 ~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~ 443 (477)
T TIGR01301 394 LAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQ 443 (477)
T ss_pred HHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 346888999999995 455999999999999999999998888655
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-20 Score=181.19 Aligned_cols=371 Identities=11% Similarity=0.038 Sum_probs=216.1
Q ss_pred HHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh-hCchhHHHhhHHHHHHHHHHHH
Q psy4871 59 AAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAM 137 (494)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~ 137 (494)
..++..+......+.++.+.++ ++|+++.+.+++.+.+........+++|+++|| +|||++++.+.++.+++.++++
T Consensus 29 ~~~~~~~~~y~~~~~l~~yl~~--~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~ 106 (500)
T PRK09584 29 IELWERFGYYGLQGIMAVYLVK--QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVA 106 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3333444433344444444323 899999999999888877766777899999999 5999999999999999999998
Q ss_pred HHh-hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCC--chhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHH
Q psy4871 138 YSR-SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI--RGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYS 210 (494)
Q Consensus 138 ~a~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~ 210 (494)
+++ +.+.++++|+++|++.|...+...+++.|++|+++ |..+.++++.+.++|.+++|.++++ +|||+.|.+.
T Consensus 107 ~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~ 186 (500)
T PRK09584 107 WSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALS 186 (500)
T ss_pred HhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 874 56677889999999999998999999999998654 4557888889999999999888876 4899999998
Q ss_pred HHHHHHHHHHhh----ccCcchhHHHhhCChHHHHHH------------HHHHhcCChhhHHHHHHHHHHcccccccccc
Q psy4871 211 LIIPIIFTVTFM----FMPESPYFYAIKNQEGKAIES------------LKWLRNKTADQVQSELQIIKQNTSKNVERTN 274 (494)
Q Consensus 211 ~~~~~~~~~~~~----~~~esp~~l~~~~~~~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (494)
++..++..+..+ .++|.++- ..+.+.+..... ...... +.+.......-.... . ....
T Consensus 187 ~i~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~--~~~~ 260 (500)
T PRK09584 187 VVGMLITVVNFAFCQRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLH-NQEIARMALGVVALG--I--VVIF 260 (500)
T ss_pred HHHHHHHHHHHHHhHHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH--H--HHHH
Confidence 765544433222 22332100 000001100000 000000 000000000000000 0 0000
Q ss_pred hhh-h-cCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHH----h-c-----CCCcchhHHHHHHHHHHHHhhhhh--
Q psy4871 275 FRE-F-MGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFA----S-S-----ETFLPSDYISILFAIILLVSIFPS-- 340 (494)
Q Consensus 275 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-----~~~~~~~~~~~~~~~~~~~~~~~~-- 340 (494)
.++ . .++..+++....+.+.... ..++......+..+. + . |......+...+..+..++..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~--i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~ 338 (500)
T PRK09584 261 GKEAFAMKGAARRKMIVAFILMLEA--IIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAA 338 (500)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHH--HHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHH
Confidence 000 0 0001111222111111110 001222222222221 1 1 222245666677776666666666
Q ss_pred --hhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcc
Q psy4871 341 --TYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSN 418 (494)
Q Consensus 341 --g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 418 (494)
+++.+|++..+.+.+++++.+++.+.+....... +. +..-+.++.+...++.+.+-.. ..|....++.+..|++
T Consensus 339 ~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~-~~--~~~vs~~~~~~~~~l~~~ge~~-~~p~g~s~~~~~aP~~ 414 (500)
T PRK09584 339 IYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFA-ND--AGIVSVNWLIASYGLQSIGELM-ISGLGLAMVAQLVPQR 414 (500)
T ss_pred HHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCccCHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCcHH
Confidence 4445555555778888888888888776653321 00 0012234555556666666443 5567778999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh
Q psy4871 419 MKAVSCAVINILCTTLGLISYKLFF 443 (494)
Q Consensus 419 ~r~~~~g~~~~~~~~~~~i~~~i~~ 443 (494)
.||..+|+......+|+.++..+.+
T Consensus 415 ~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 415 LMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887777777777666654
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-20 Score=157.43 Aligned_cols=364 Identities=13% Similarity=0.040 Sum_probs=232.8
Q ss_pred chhhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh-hCchhHHHh
Q psy4871 46 YTGRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLM 124 (494)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~ 124 (494)
.-++.++++..|+..|-+.+.+........++.. +.+++.++..++.++|+....+-++++|++.|| +|-|..-++
T Consensus 39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~---d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii 115 (459)
T KOG4686|consen 39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKL---DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTII 115 (459)
T ss_pred hhhHHHHHHHHHHhcccceeecCCchhhhhhhhc---ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHH
Confidence 3447777888888888777777777777777775 889999999999999999999999999999996 787776666
Q ss_pred hHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy4871 125 TGPITTASWIIAM---YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 201 (494)
Q Consensus 125 ~~~~~~i~~~~~~---~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 201 (494)
-+.+..++.++.+ ..+.+|.++++||+.|+|.-....+...|+.-|+..|+.+.++|+.....-+|..+-..+.+++
T Consensus 116 ~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 116 LCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence 6666666766655 4689999999999999998888899999999999999999999999888888875543333221
Q ss_pred ----hhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCC-hHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchh
Q psy4871 202 ----SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQ-EGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFR 276 (494)
Q Consensus 202 ----~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (494)
+--..-.....+.+...+-...+..|-......+- ++.|++.+++-.+. ..+...+.
T Consensus 196 y~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~------------------~Ge~pkLt 257 (459)
T KOG4686|consen 196 YDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGF------------------LGEEPKLT 257 (459)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCc------------------ccCCcccc
Confidence 10000000000000000000000000000001111 12222222221110 00111111
Q ss_pred h---hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchh
Q psy4871 277 E---FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRV 351 (494)
Q Consensus 277 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 351 (494)
+ ++ +.+|... +.+.... .....+....|.++++ .|++. .++...........+.+++.|.++||+|++.
T Consensus 258 dv~~f~-ppfw~~~-iicv~yy----va~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~ 331 (459)
T KOG4686|consen 258 DVNTFY-PPFWVLV-IICVLYY----VAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL 331 (459)
T ss_pred cccccC-ccHHHHH-HHHHHHH----HHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee
Confidence 2 22 2233222 2222111 1234455556667655 46664 4555555566667788889999999999987
Q ss_pred HHHHhhHHHHH-HHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHH
Q psy4871 352 LFLVSSAGCSL-FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINIL 430 (494)
Q Consensus 352 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 430 (494)
..+.+..+..+ +-..+.+ +.+.+...+.+.+..+++.. ...|.+++.+.|.++.|++.|+++.+
T Consensus 332 ~wv~~a~~~tl~~H~~l~F--------------t~lsPy~~m~~lGLsysllA-cslWP~va~~vpE~qLGTaygf~qsI 396 (459)
T KOG4686|consen 332 WWVASACILTLLGHSGLFF--------------TFLSPYTSMTFLGLSYSLLA-CSLWPCVASLVPEEQLGTAYGFIQSI 396 (459)
T ss_pred hhHHHHHHHHHHHhhhHHh--------------hhccHHHHHHHHhhhHHHHH-HHHhhhhhhhCCHHHhcchHHHHHHH
Confidence 66555444333 3333333 23334666777777766532 34568888999999999999999999
Q ss_pred HHHHHHHHHHhhhchhhhcCC
Q psy4871 431 CTTLGLISYKLFFLMDKHIGK 451 (494)
Q Consensus 431 ~~~~~~i~~~i~~~l~~~~~~ 451 (494)
.++|-++.|.+.|.+.|..|.
T Consensus 397 qNLgla~i~Iiag~i~d~~g~ 417 (459)
T KOG4686|consen 397 QNLGLAFIPIIAGFIADGDGS 417 (459)
T ss_pred HhhhhhHHhhhhheeecCCCc
Confidence 999999999999999996663
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-19 Score=168.62 Aligned_cols=340 Identities=14% Similarity=0.103 Sum_probs=230.6
Q ss_pred HHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhC-chhHHHhhHHHHHHHHHHHHHH
Q psy4871 61 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG-RKWSLLMTGPITTASWIIAMYS 139 (494)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~i~~~~~~~a 139 (494)
|+..+..+...|.++.+.+ +.|+|..|+|.+.++..+...++++++|.++||++ +|+++.+..++.++........
T Consensus 12 f~~f~~~G~~~p~~~~~L~---~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~ 88 (400)
T PF03825_consen 12 FLYFFAYGAFLPYLPLYLE---SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS 88 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666788887774 88999999999999999999999999999999987 6788878888888877777788
Q ss_pred hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCC--CchhHHHHHHHHHHHHHHH-HHHhhhhhh---hHHHHHHHHHH
Q psy4871 140 RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETS--IRGTIGTLFQISCHLGILY-TYVLGSELS---YMNYLTYSLII 213 (494)
Q Consensus 140 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~-~~~~~~~~~---w~~~f~~~~~~ 213 (494)
++++.+++.-++..+......|...++..+...++ +-|+.-.+-+.++.++... +..+....+ ..+.+++.+..
T Consensus 89 ~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 168 (400)
T PF03825_consen 89 SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAIL 168 (400)
T ss_pred ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 89999988888888888888888888887777532 2244444444444444322 222333322 23456666666
Q ss_pred HHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHH
Q psy4871 214 PIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAF 292 (494)
Q Consensus 214 ~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 292 (494)
.++.....+.+|+.|.- ++.++ . .++....+..+ +++|+...-.+..+
T Consensus 169 ~~ll~~~~l~lp~~~~~----------------------~~~~~-------~-~~~~~~~~~~~llk~~~~~~Fll~~~- 217 (400)
T PF03825_consen 169 SLLLAGFALFLPKTPPK----------------------RSAKE-------S-VKKLLGLDALKLLKNPRFLVFLLAAF- 217 (400)
T ss_pred HHHHHHHHHhCCCCccc----------------------cccCC-------C-cccccchHHHHHhcCccHHHHHHHHH-
Confidence 66555556677876510 00000 0 00001111223 55554432222221
Q ss_pred HHHHHHccchHhHHHhHHHHHHhcC-CCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHH
Q psy4871 293 LAVFRAFTGVQSIIAYANTIFASSE-TFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLY 370 (494)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (494)
...........|.+.++++.| .+. ..+....+..++.++.-...+++..|+|.|+++.++.+..++-..++...
T Consensus 218 ----l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~ 293 (400)
T PF03825_consen 218 ----LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF 293 (400)
T ss_pred ----HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 112224566778888888887 443 34555567778888999999999999999999999999999988887764
Q ss_pred HHhhhccccCCCccchHhHHH----HHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHH-HHHHHHHHHHhhhch
Q psy4871 371 YYVTIELQYEIPYTSWVPFLS----ISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINIL-CTTLGLISYKLFFLM 445 (494)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~~~~i~~~i~~~l 445 (494)
. ++.+..... ..+.+..++....+ ...++.+..|++.|++++++.+.. ..+|..++..+.|++
T Consensus 294 ~-----------~~~~~~~~~~~l~q~lhG~tf~~~~~a-~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l 361 (400)
T PF03825_consen 294 S-----------DPWPFIVALQLLGQLLHGLTFGLFHAA-SVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL 361 (400)
T ss_pred c-----------CCcHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 233332222 23467776665443 348899999999999999998875 579999999999999
Q ss_pred hhhcC
Q psy4871 446 DKHIG 450 (494)
Q Consensus 446 ~~~~~ 450 (494)
.|..+
T Consensus 362 ~~~~g 366 (400)
T PF03825_consen 362 YDAFG 366 (400)
T ss_pred HHHhc
Confidence 98544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-18 Score=164.28 Aligned_cols=379 Identities=13% Similarity=0.068 Sum_probs=212.8
Q ss_pred HHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhh-CchhHHHhhHHHHHHHHHHHHHH
Q psy4871 61 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-GRKWSLLMTGPITTASWIIAMYS 139 (494)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~a 139 (494)
+...+........+|.+..+ ++|+++.+.+.+.+.+.....++.+++|+++||+ |||++++++.++.+++.++++..
T Consensus 19 ~~e~fs~Yg~~~~L~~yL~~--~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~ 96 (493)
T PRK15462 19 IWEYFSFYGMRALLILYLTN--QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444344555555433 7899999999999999999999999999999999 99999999999999998877654
Q ss_pred h-hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCC--CchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHH
Q psy4871 140 R-SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETS--IRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLI 212 (494)
Q Consensus 140 ~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~ 212 (494)
+ +...+.++..+.++|.|...+...++++|.+|++ +|..+.++...+.++|..++|.+.++ .||++.|.+.++
T Consensus 97 ~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 97 EIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 3 2233444444555666777777788999999875 68889999999999999999998877 489999998766
Q ss_pred HHHHHHHHhhccCcchhHH-HhhCChHHHHHHHHHHh----c-------CChhhHHHHHHH-HHHcccccccc---cchh
Q psy4871 213 IPIIFTVTFMFMPESPYFY-AIKNQEGKAIESLKWLR----N-------KTADQVQSELQI-IKQNTSKNVER---TNFR 276 (494)
Q Consensus 213 ~~~~~~~~~~~~~esp~~l-~~~~~~~~a~~~~~~~~----~-------~~~~~~~~~~~~-~~~~~~~~~~~---~~~~ 276 (494)
..++..+..++..+..... ..+.++.+.++...... - .......++... .-....-.... .-.+
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYR 256 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333332211110000 00000000000000000 0 000000000000 00000000000 0000
Q ss_pred hhcCcchHHHHHHHHHHHHH--HHcc----chHhHHHhHHHHHHh--cCCCcchhHHHHHHHHHHHHhhhhhhhhhcccC
Q psy4871 277 EFMGRSNMKAFVFMAFLAVF--RAFT----GVQSIIAYANTIFAS--SETFLPSDYISILFAIILLVSIFPSTYYIDRAG 348 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 348 (494)
.-.++.-+++....+.+..+ ..+. ....+..|.....+. .|+..++.+...++.+..++.+++.+++-.|..
T Consensus 257 ~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~ 336 (493)
T PRK15462 257 KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESV 336 (493)
T ss_pred hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHh
Confidence 00001112222111111111 0011 111222222221111 133346778888888888888888777766653
Q ss_pred c--h-----hHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhh
Q psy4871 349 R--R-----VLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKA 421 (494)
Q Consensus 349 ~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 421 (494)
| | .-+..++++++++.+.+.+..... +. +...+.++.+...+++..+ .+...|+..++++++.|++.+|
T Consensus 337 ~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~-~~--~~~~s~~wl~~~~~~~t~g-El~~sPvgls~~~~laP~~~~g 412 (493)
T PRK15462 337 AGNRTVRIWGKFALGLGLMSAGFCILTLSARWS-AM--YGHSSLPLMVLGLAVMGFA-ELFIDPVAMSQITRIEIPGVTG 412 (493)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc-CC--CCCcCHHHHHHHHHHHHHH-HHHHChHHHHHHHHhChHHHHH
Confidence 2 2 126677788888877765543322 10 1113445555555555555 4567788889999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhhch
Q psy4871 422 VSCAVINILC-TTLGLISYKLFFLM 445 (494)
Q Consensus 422 ~~~g~~~~~~-~~~~~i~~~i~~~l 445 (494)
..+|+..... .+++.++..+.+..
T Consensus 413 ~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 413 VLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999985533 46666655554433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=174.64 Aligned_cols=342 Identities=12% Similarity=0.032 Sum_probs=206.1
Q ss_pred hhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhh----hhCc-hhHHHhhHHHHHHHHHHHH
Q psy4871 63 TGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN----RIGR-KWSLLMTGPITTASWIIAM 137 (494)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~i~~~~~~ 137 (494)
.++......+.++.+.++ .+|+++.++|.+..+.-+.-++..|+.|.++| |+|| |+.++++.+..+++..++.
T Consensus 18 ~~~~~~~~~~~l~~yyt~--v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf 95 (473)
T PRK10429 18 KDFAIGIVYMYLMYYYTD--VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF 95 (473)
T ss_pred HhHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH
Confidence 333344444544444334 67999999999999999999999999999999 6697 6677778888888766664
Q ss_pred HHh------hHHHHHHHHHHHHhHhhhhhhhhhhheeccc-CCCCchhHHHHHHHHHHHHHHHHHHhhh----h------
Q psy4871 138 YSR------SVLGLYVMRTLQGFSMAAIYVISPMYLGEIS-ETSIRGTIGTLFQISCHLGILYTYVLGS----E------ 200 (494)
Q Consensus 138 ~a~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~----~------ 200 (494)
..+ .+..+++.-++.+++.....+...++..|+. ++++|.+..++...+.++|..+.+.+.. .
T Consensus 96 ~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~ 175 (473)
T PRK10429 96 SAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDR 175 (473)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 432 1345566667778888888888889999998 5888999988866666665444333221 1
Q ss_pred -hhhHHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-
Q psy4871 201 -LSYMNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE- 277 (494)
Q Consensus 201 -~~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 277 (494)
.+|+....+.+++.++..+.. +..+|.+.. ++.+. ++.++...+..++.
T Consensus 176 ~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----------------------~~~~~------~~~~~~~~~~~~~~~ 227 (473)
T PRK10429 176 GFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS----------------------DNQVS------AEGSHLTLKDIVALI 227 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCceecCCc----------------------ccccc------ccccCCCHHHHHHHH
Confidence 256666666666655544333 445654210 00000 00000001111222
Q ss_pred hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHh
Q psy4871 278 FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVS 356 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 356 (494)
++++.++ ..+...++.. ........+.+++.+...... .......+..++.+++.++.+++.||+|+|+.+..+
T Consensus 228 ~~n~~~~-~ll~~~~~~~----~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~ 302 (473)
T PRK10429 228 YKNDQLS-CLLGMALAYN----IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGA 302 (473)
T ss_pred hcCHHHH-HHHHHHHHHH----HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 2343322 2222111111 112333333344433332111 233444555678889999999999999999998877
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCC-------cchhhHHHHHHHH
Q psy4871 357 SAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS-------SNMKAVSCAVINI 429 (494)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~ 429 (494)
..+..++.+.+....... ..+.+..++...+.+.+.+... +..+++.+|..+ .+..|...|..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~ 374 (473)
T PRK10429 303 SIFPVLSCGVLLLMGLAA-------PHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTM 374 (473)
T ss_pred HHHHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHH
Confidence 776665554443321111 1233344444445555554433 455678888855 3445778899999
Q ss_pred HHHHHHHHHHHhhhchhh
Q psy4871 430 LCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 430 ~~~~~~~i~~~i~~~l~~ 447 (494)
...++..+++.+.|.+.+
T Consensus 375 ~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 375 VVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999887
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=167.78 Aligned_cols=325 Identities=12% Similarity=0.052 Sum_probs=204.3
Q ss_pred HHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh----hCc-hhHHHhhHHHHHHHHHHHHHHhh------H
Q psy4871 74 LEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR----IGR-KWSLLMTGPITTASWIIAMYSRS------V 142 (494)
Q Consensus 74 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~~~~i~~~~~~~a~~------~ 142 (494)
...+. + .+|+++.++|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.++....++ +
T Consensus 33 ~~~~t-~--~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 33 AYFYT-D--VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHH-H--hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 34455 4 889999999999999999999999999999998 786 56666787888777766655542 4
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhheecccC-CCCchhHHHHHHHHHHHHHHHHHHhh----hh-------hhhHHHHHHH
Q psy4871 143 LGLYVMRTLQGFSMAAIYVISPMYLGEISE-TSIRGTIGTLFQISCHLGILYTYVLG----SE-------LSYMNYLTYS 210 (494)
Q Consensus 143 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~----~~-------~~w~~~f~~~ 210 (494)
+.+++..++.+.+.........++.+|+.+ +++|++..++...+..+|..+++.+. .. .+|+..+.+.
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~ 189 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM 189 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 556666777777777777777889999984 57799888888777777766665432 11 3688788777
Q ss_pred HHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHH
Q psy4871 211 LIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFV 288 (494)
Q Consensus 211 ~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 288 (494)
++++++..+.. +..+|.++ +++ .++.+.+..+++ ++++.++.. +
T Consensus 190 ~ii~~v~~~~~~~~~~e~~~----------------------~~~-----------~~~~~~~~~~~~~~~n~~~~~l-~ 235 (444)
T PRK09669 190 GLLGVVLFFCCFFMTKERYT----------------------PEV-----------DNSSSVWKDLKLLLGNSQWRIM-F 235 (444)
T ss_pred HHHHHHHHHHHhCCeEEecC----------------------CCC-----------cCCCCHHHHHHHHhCCchHHHH-H
Confidence 77776665444 34444310 000 000111223444 555544332 2
Q ss_pred HHHHHHHHHHccchHhHHHhHHHHHHhc-CCCcchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHH
Q psy4871 289 FMAFLAVFRAFTGVQSIIAYANTIFASS-ETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIA 367 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 367 (494)
...++.... .........++.+.. +.............+..+++.++.+++.||+|+|+.+..+..+.+++.+.+
T Consensus 236 ~~~~~~~~~----~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~ 311 (444)
T PRK09669 236 IFNVVLLTA----VVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALI 311 (444)
T ss_pred HHHHHHHHH----HHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 222211111 111111222222221 111122233444556777888899999999999998887766555443322
Q ss_pred HHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCC-------cchhhHHHHHHHHHHHHHHHHHHH
Q psy4871 368 GLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS-------SNMKAVSCAVINILCTTLGLISYK 440 (494)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~i~~~ 440 (494)
.+.. .++.+..++..++.+++.+. ..+..+++++|..+ .+..|...|+.+....+|..+++.
T Consensus 312 ~~~~----------~~~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~ 380 (444)
T PRK09669 312 FFIP----------PSNVWLIFALNILFNFIQNL-TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGA 380 (444)
T ss_pred HHhC----------cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHH
Confidence 2211 12334445555566666554 44667788888874 334577889999999999999999
Q ss_pred hhhchhhhcC
Q psy4871 441 LFFLMDKHIG 450 (494)
Q Consensus 441 i~~~l~~~~~ 450 (494)
+.|.+.+..|
T Consensus 381 i~g~ll~~~G 390 (444)
T PRK09669 381 VVGWILAWVD 390 (444)
T ss_pred HHHHHHHHcC
Confidence 9999988333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-18 Score=165.45 Aligned_cols=327 Identities=14% Similarity=0.169 Sum_probs=228.2
Q ss_pred HHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhh----hhCch-hHHHhhHHHHHHHHHHHHHH-h------
Q psy4871 73 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN----RIGRK-WSLLMTGPITTASWIIAMYS-R------ 140 (494)
Q Consensus 73 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr-~~l~~~~~~~~i~~~~~~~a-~------ 140 (494)
..+.+. + .+++++...|.+..+.-+-.++..|+.|.++| |+||| +.++++..+.+++.+++... +
T Consensus 24 ~~~f~~-~--~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 24 LLYFYT-D--VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHH-H--HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 344555 3 77999999999999999999999999999999 89965 55557888888887777655 4
Q ss_pred -hHHHHHHHHHHHHhHhhhhhhhhhhheecccC-CCCchhHHHHHHHHHHHHHHHHHHhhhh----h-------hhHHHH
Q psy4871 141 -SVLGLYVMRTLQGFSMAAIYVISPMYLGEISE-TSIRGTIGTLFQISCHLGILYTYVLGSE----L-------SYMNYL 207 (494)
Q Consensus 141 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~-------~w~~~f 207 (494)
....+.+.-++..++.........++..|+.+ +++|.+..++-..+..+|.++...+... + +|++..
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 23445777777789999998999999999998 4689999999888888888654444322 1 689888
Q ss_pred HHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHH
Q psy4871 208 TYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMK 285 (494)
Q Consensus 208 ~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 285 (494)
.+.+++.++..+.. +..+|.++ +. +++.++.+-+..+++ ++++.++
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke~~~----------------------~~---------~~~~~~~~~~~~~~~~~~nr~~~- 228 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKERSV----------------------EV---------TEQEKKISLRDSLRSLFRNRPFR- 228 (428)
T ss_pred HHHHHHHHHHhhhhhheeeeccc----------------------cc---------cccccccccccchhhhcccchHH-
Confidence 88888877776555 55565110 00 000011122334555 5554433
Q ss_pred HHHHHHHHHHHHHccchHhHHHhHHHHHHhc-CCCcchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHH
Q psy4871 286 AFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFS 364 (494)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 364 (494)
..+...++..+. ......+.+++.+.. +.+...+....+..+..+++.++.+++.||+|+|+.+..+..+.+++.
T Consensus 229 ~l~~~~~~~~~~----~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~ 304 (428)
T PF13347_consen 229 ILLLAFFLQWLA----FALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF 304 (428)
T ss_pred HHHHHHHHHHhh----hhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence 233332222222 222333334444332 222244556667788889999999999999999999999999999888
Q ss_pred HHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCc-------chhhHHHHHHHHHHHHHHHH
Q psy4871 365 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS-------NMKAVSCAVINILCTTLGLI 437 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~~~~~i 437 (494)
+++.+.. ..+.+..++...+.+.+.+... ...+++.+|+.+. +..|...|+.+....++..+
T Consensus 305 ~~~~~~~----------~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~l 373 (428)
T PF13347_consen 305 LLLFFLG----------PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGL 373 (428)
T ss_pred HHHHHHH----------hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHH
Confidence 8776652 1355666777777777776544 5667888988763 34689999999999999999
Q ss_pred HHHhhhchhhhc
Q psy4871 438 SYKLFFLMDKHI 449 (494)
Q Consensus 438 ~~~i~~~l~~~~ 449 (494)
++.+.+.+.+..
T Consensus 374 a~~i~g~~l~~~ 385 (428)
T PF13347_consen 374 AGAIVGLLLALV 385 (428)
T ss_pred HHHHHHHHHHHh
Confidence 999999998743
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=169.06 Aligned_cols=371 Identities=15% Similarity=0.108 Sum_probs=227.4
Q ss_pred HHHHHHHHHHhhhcccch-hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhC-----chhHHHhhH
Q psy4871 53 EAHACIAAFTTGMSFAWS-APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG-----RKWSLLMTG 126 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~ 126 (494)
..++....+..|.. +.. ..+.+.+.+ ++|+++++++...+...+...+-.+ +|+++||++ ||+.++++.
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~---~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~ 102 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTD---DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSG 102 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHH
Confidence 33444455677777 443 445566664 8999999999999999999999666 999999998 788888887
Q ss_pred HHHH-HHHHHHHHHhhHHHH-HHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHH---HHHHHHHHHHHHhhh--
Q psy4871 127 PITT-ASWIIAMYSRSVLGL-YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQ---ISCHLGILYTYVLGS-- 199 (494)
Q Consensus 127 ~~~~-i~~~~~~~a~~~~~l-~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~---~~~~~G~~~~~~~~~-- 199 (494)
++.+ ++....+..++.... .+.+++.+++.+...+++-++..|..+ +++....+... ....+|.++++.+++
T Consensus 103 ~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l 181 (468)
T TIGR00788 103 LLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL 181 (468)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence 7763 443333333454444 448899999999999999999999998 54444333332 222355655555554
Q ss_pred --hhhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh
Q psy4871 200 --ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE 277 (494)
Q Consensus 200 --~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (494)
.++|+..|++.+++.++..+..++++|++.....+.+ ++........ .... .+.. .......+.
T Consensus 182 ~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~-~~~~~~~~~~----~~~~---~~~~------~~~~~~l~~ 247 (468)
T TIGR00788 182 LDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIG-TYLEMNMALL----TLGV---LANV------KVQILGLRG 247 (468)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhccccccccccccc-ccchhhhhhh----hhhH---HHHH------HHHHHHHHH
Confidence 4689999999988888776666778885310000000 0000000000 0000 0000 000112222
Q ss_pred -hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHH
Q psy4871 278 -FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLV 355 (494)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 355 (494)
++++..++.....++.+. ........+..+.+ ...|++. ..+......+++.+++..+.+++.+|++.|+++.+
T Consensus 248 ~l~~~~i~~~l~fifl~~~-~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~ 323 (468)
T TIGR00788 248 AIQLLEIAKPLIFIFLSYA-NLPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGV 323 (468)
T ss_pred HHhcHHHHHHHHHHHHHHh-hcCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 444444432222222111 11111111111112 2345554 56777777889999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHH
Q psy4871 356 SSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLG 435 (494)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~ 435 (494)
+.++.+++.+......... +.... ....+......++..++.++.+.|.. .++.+..|++.+|+..++.+++.++|.
T Consensus 324 ~~~l~~~~~~~~~~l~~~~-~~~~g-i~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~ 400 (468)
T TIGR00788 324 TTLLYTLSSLFDLILVKRW-NLAFG-ISDEVFVLGDSIIAEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGS 400 (468)
T ss_pred HHHHHHHHHhCceeeeecc-ccccC-CCCeeeeeehhHHHHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHH
Confidence 8888877765432211000 00000 01223334445556666666666665 889999999999999999999999999
Q ss_pred HHHHHhhhchhhhcC
Q psy4871 436 LISYKLFFLMDKHIG 450 (494)
Q Consensus 436 ~i~~~i~~~l~~~~~ 450 (494)
.+++.+.+.+.+.-|
T Consensus 401 ~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 401 SVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999888444
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-17 Score=148.49 Aligned_cols=360 Identities=14% Similarity=0.119 Sum_probs=246.9
Q ss_pred ccchhhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHH
Q psy4871 44 GTYTGRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLL 123 (494)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~ 123 (494)
+-.++||++++++++..+.+++..--++++...... .++ +....-|..-+|++.+....+++-|+.||+|-|..++
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~---~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l 113 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNS---FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL 113 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHH---Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence 456779999999999999999888778888777774 778 7778899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHh------hHH--HHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHH
Q psy4871 124 MTGPITTASWIIAMYSR------SVL--GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY 195 (494)
Q Consensus 124 ~~~~~~~i~~~~~~~a~------~~~--~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~ 195 (494)
++..+.++|..+-..+. .++ ....+..+.+.+.-........+..-|+++++|..+..+-.++..+|.+++.
T Consensus 114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ 193 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF 193 (480)
T ss_pred HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence 99999999999887753 344 6678888888888777777778888999999999999998888888888777
Q ss_pred Hhhhh----------hhhHH--HHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHH
Q psy4871 196 VLGSE----------LSYMN--YLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQII 262 (494)
Q Consensus 196 ~~~~~----------~~w~~--~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 262 (494)
++... ..|.. .|+...+++.+.+++. +..++.|+. ++.......+
T Consensus 194 llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t---------------------Pps~s~~~~~- 251 (480)
T KOG2563|consen 194 LLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT---------------------PPSASQAALQ- 251 (480)
T ss_pred hccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---------------------CCchhHhhhh-
Confidence 76654 24654 3444444433333333 334443321 1111100000
Q ss_pred HHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhh
Q psy4871 263 KQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPS 340 (494)
Q Consensus 263 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 340 (494)
+..-..+.++ ++++.+ +...+.+....+.++.....+...+...|++. .+++......+++++++.++
T Consensus 252 -----~~~f~~si~~~~~n~~F-----~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~ 321 (480)
T KOG2563|consen 252 -----DASFPKSIKSCFKNRQF-----IILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALAS 321 (480)
T ss_pred -----cCcHHHHHHHHHcCccH-----HHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHH
Confidence 0112223444 554433 23333333333334455555544444555553 78888999999999999999
Q ss_pred hhhhcccCc-hhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcch
Q psy4871 341 TYYIDRAGR-RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM 419 (494)
Q Consensus 341 g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 419 (494)
|.+.||.+. |...++.+....++...+... ... ....++......+++.+ +.+..|+.+-+..|..-|..
T Consensus 322 gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~-t~~-------~~~~viv~~t~~~~g~~-~~~~~Pig~ElgvE~TyPv~ 392 (480)
T KOG2563|consen 322 GIIADKTKKFKLTTLVLYLFALVGTLMLLTC-TLF-------LGDSVIVFTTCGLLGFF-GTGYLPIGFELGVETTYPVA 392 (480)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hcc-------CCceEehhhhHHHHHHh-hcCCCCcceeeeeeeccccC
Confidence 999999875 444444444444442222111 111 22344444445555544 45667887788888876667
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 420 KAVSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 420 r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
-++..|+.+..+++.+.+-..+.+...+.
T Consensus 393 E~tSsGll~~~gq~f~~~~~~~~~~~~~~ 421 (480)
T KOG2563|consen 393 EGTSSGLLNLSGQIFGVILVFIMGILAED 421 (480)
T ss_pred CcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence 79999999999999999999999988873
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-17 Score=159.86 Aligned_cols=320 Identities=8% Similarity=0.046 Sum_probs=187.9
Q ss_pred HhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhh----CchhHH-HhhHHHHHHHHHHHHHHh-------hH
Q psy4871 75 EELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI----GRKWSL-LMTGPITTASWIIAMYSR-------SV 142 (494)
Q Consensus 75 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~i~~~~~~~a~-------~~ 142 (494)
+.+. + .+|+++.++|.+.+...+..++..++.|+++||. |||+.. +++.+...+..++....+ ..
T Consensus 33 ~y~~-~--~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (448)
T PRK09848 33 SYYT-D--VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKV 109 (448)
T ss_pred HHHH-H--HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHH
Confidence 4455 3 7799999999999999999999999999999996 766644 566555555444432111 22
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhheecccCC-CCchhHHHHHHHH-----HHHHHHHHHHhhhhh------hhHHHHHHH
Q psy4871 143 LGLYVMRTLQGFSMAAIYVISPMYLGEISET-SIRGTIGTLFQIS-----CHLGILYTYVLGSEL------SYMNYLTYS 210 (494)
Q Consensus 143 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~-----~~~G~~~~~~~~~~~------~w~~~f~~~ 210 (494)
+.+++.-++.+++.+...+...++..+..++ ++|.+..++-..+ ..+|..++|++.... +|.....+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~ 189 (448)
T PRK09848 110 VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVL 189 (448)
T ss_pred HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 3345556777888888887777777777654 5688776665443 234555566555432 121111222
Q ss_pred HHHHHHHHH-HhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHH
Q psy4871 211 LIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFV 288 (494)
Q Consensus 211 ~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 288 (494)
++++++..+ .....||++. .+. ++...+..+++ ++++.+.....
T Consensus 190 ~v~~~~~~~~~~~~~~e~~~----------------------~~~------------~~~~~~~~~~~l~~n~~f~~~~~ 235 (448)
T PRK09848 190 AIAGMVLYFICFKSTRENVV----------------------RIV------------AQPSLKISLQTLKRNRPLFMLCI 235 (448)
T ss_pred HHHHHHHHHHHHcCcEeccC----------------------CCc------------cCCCHHHHHHHHhCCchHHHHHH
Confidence 222222222 2233455421 000 00001112444 55554432222
Q ss_pred HHHHHHHHHHccchHhHHHhHHHHHHhc-CCCcchh-HHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHH
Q psy4871 289 FMAFLAVFRAFTGVQSIIAYANTIFASS-ETFLPSD-YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 366 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 366 (494)
..+. .. .+......+.+.++++. +.+.... .......++.+++.++.+++.||+|+|+.+..+.++..++.+.
T Consensus 236 ~~~~-~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~ 310 (448)
T PRK09848 236 GALC-VL----ISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLL 310 (448)
T ss_pred HHHH-HH----HHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 1111 11 11233334445554432 2222222 2222234566788899999999999999999988887777665
Q ss_pred HHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcc-------hhhHHHHHHHHHHHHHHHHHH
Q psy4871 367 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSN-------MKAVSCAVINILCTTLGLISY 439 (494)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~~~~~i~~ 439 (494)
+.+.. ..+.+.......+.+.+.+... +..+++.+|..+.+ .+|...|+.+....+|..+++
T Consensus 311 ~~~~~----------~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~ 379 (448)
T PRK09848 311 FFWVS----------VWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGG 379 (448)
T ss_pred HHHcC----------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHH
Confidence 54321 1233444444555555555433 44557777777643 459999999999999999999
Q ss_pred Hhhhchhh
Q psy4871 440 KLFFLMDK 447 (494)
Q Consensus 440 ~i~~~l~~ 447 (494)
.+.+.+.+
T Consensus 380 ~i~g~~l~ 387 (448)
T PRK09848 380 SIPAFILG 387 (448)
T ss_pred HHHHHHHH
Confidence 99999877
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=157.04 Aligned_cols=316 Identities=12% Similarity=0.059 Sum_probs=191.7
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh----hCch-hHHHhhHHHHHHHHHHHHHHhh------HHHHHHHHHH
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR----IGRK-WSLLMTGPITTASWIIAMYSRS------VLGLYVMRTL 151 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~a~~------~~~l~~~r~l 151 (494)
..|+++..+|.+..+.-+--++..|+.|.++|| +||| +.++++.+..+++.+++...++ ...+++.-++
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~ 118 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTL 118 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 789999999999999999999999999999995 7965 5566677888888776655442 3455666677
Q ss_pred HHhHhhhhhhhhhhheecccC-CCCchhHHHHHHHHHHHHHHHHHHhhhh-----------hhhHHHHHHHHHHHHHHHH
Q psy4871 152 QGFSMAAIYVISPMYLGEISE-TSIRGTIGTLFQISCHLGILYTYVLGSE-----------LSYMNYLTYSLIIPIIFTV 219 (494)
Q Consensus 152 ~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----------~~w~~~f~~~~~~~~~~~~ 219 (494)
..++.......-.++..|+.+ +++|++..++...+..+|.++++.+... .+|+....+.+++.+++.+
T Consensus 119 ~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 119 LTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 788888888888899999987 6789999999998888887766555322 2577666666666555544
Q ss_pred Hh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHH
Q psy4871 220 TF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFR 297 (494)
Q Consensus 220 ~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (494)
.. ...+|.++ .+. ++...+..++. ++++.++ ......++....
T Consensus 199 i~~~~~kE~~~----------------------~~~------------~~~~~~~~l~~~~~Nk~~~-~l~~~~~~~~~~ 243 (460)
T PRK11462 199 FCFFTTKERVE----------------------APP------------TTTSMREDLRDIWQNDQWR-IVGLLTIFNILA 243 (460)
T ss_pred HHHhcceeccC----------------------CCc------------cCCCHHHHHHHHhCChHHH-HHHHHHHHHHHH
Confidence 33 33444321 000 00001112333 4444332 222222222221
Q ss_pred HccchHhHHHhHHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhcc
Q psy4871 298 AFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIEL 377 (494)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (494)
... ......|...+.. +.............+..+++.++++++.||+++|+....+..+..+..+++.+. +
T Consensus 244 ~~~-~~~~~~y~~~y~~--g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~---~--- 314 (460)
T PRK11462 244 VCV-RGGAMMYYVTWIL--GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV---P--- 314 (460)
T ss_pred HHH-HHhHhhhhhhhhc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---c---
Confidence 111 1222222222221 111122344556778888999999999999999988765554443333332221 1
Q ss_pred ccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCC-------cchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 378 QYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS-------SNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
..+.+..++..++.+++.+ ...++.+++.+|... .+..|...+..+....+|..+++.+.|.+.+
T Consensus 315 ----~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 315 ----MQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred ----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222333344444432 234455567776655 3334555677778899999999998888876
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=145.83 Aligned_cols=261 Identities=14% Similarity=0.108 Sum_probs=178.4
Q ss_pred HHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----------------
Q psy4871 137 MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE---------------- 200 (494)
Q Consensus 137 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~---------------- 200 (494)
+...+++.++++-++.|.|.+...+..+.++++..+++++.+.+++.+..+++|.+++|+++..
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 4567999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHhhcc--CcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccc
Q psy4871 201 ----LSYMNYLTYSLIIPIIFTVTFMFM--PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTN 274 (494)
Q Consensus 201 ----~~w~~~f~~~~~~~~~~~~~~~~~--~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (494)
..|++++++.+.+.++..+.+.+. ||... ++++ + . .++ +...
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~---------------------~~~~---~---~---~~~--~~~~ 132 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE---------------------ADVA---R---V---SSG--DTTQ 132 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc---------------------cccc---c---c---ccc--cccc
Confidence 258889886666655555444333 44210 0000 0 0 000 0000
Q ss_pred hhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc---CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCc
Q psy4871 275 FRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS---ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGR 349 (494)
Q Consensus 275 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 349 (494)
.+. +++ +.+....+..+...........|.+.++.+. +.+. +.+........+.++|+++.+++.||+++
T Consensus 133 ~~~~~~~-----~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~ 207 (310)
T TIGR01272 133 KTSAFQF-----THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQ 207 (310)
T ss_pred hhhHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 011 221 2222233444444444667788899998753 5443 56677778888999999999999999999
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHH
Q psy4871 350 RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINI 429 (494)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 429 (494)
|+.+..+..+..++.+++... +.........+.+++.+..+ |..++...+..|++ .+++.++. .
T Consensus 208 ~~~l~~~~~l~~~~~~l~~~~-------------~~~~~~~~~~l~g~~~s~i~-P~~~s~a~~~~~~~-~~~asai~-~ 271 (310)
T TIGR01272 208 GRYLAFNAFLAVLLSIGAALT-------------HGYVAMWFVLALGLFNSIMF-PTIFSLALNALGRH-TSQGSGIL-C 271 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhh-hhhhHHHH-H
Confidence 988887777666665433321 11222334445666655544 55557777777764 56677775 6
Q ss_pred HHHHHHHHHHHhhhchhhhcC
Q psy4871 430 LCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 430 ~~~~~~~i~~~i~~~l~~~~~ 450 (494)
.+.+|+++.|.+.|.+.|..+
T Consensus 272 ~~~~Gg~i~P~l~G~lad~~g 292 (310)
T TIGR01272 272 LAIVGGAIVPLLQGSLADCLG 292 (310)
T ss_pred HHHhcchHHHHHHHHHHHhcc
Confidence 788999999999999988554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-15 Score=145.14 Aligned_cols=325 Identities=16% Similarity=0.180 Sum_probs=211.0
Q ss_pred hhHHHHHHHHhHhhhhhchHhhhhhhCchhHHH-hhHHHHHHHHHHHHHH-h-hHHHHHHHHHHHHhHhhhhhhhhhhhe
Q psy4871 91 GSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLL-MTGPITTASWIIAMYS-R-SVLGLYVMRTLQGFSMAAIYVISPMYL 167 (494)
Q Consensus 91 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~~a-~-~~~~l~~~r~l~G~~~g~~~~~~~~~i 167 (494)
.++..++..+-.++..|+.|.++|+-|+||.++ +..++..+++.+..+. + +++...+.-++.-++.+.......+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788999999999999999999999655554 5555555666666664 3 444445555666678888888899999
Q ss_pred ecccCCCCc--------------------------hhHHHHHHHHHHHHHHHHHHhhhh------------hhhHHHHHH
Q psy4871 168 GEISETSIR--------------------------GTIGTLFQISCHLGILYTYVLGSE------------LSYMNYLTY 209 (494)
Q Consensus 168 ~e~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~------------~~w~~~f~~ 209 (494)
.|..+++++ ++..+.-.....+|.++.-++.-. .+-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999999888 888888777777777766555433 134777888
Q ss_pred HHHHHHHHHH-HhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhhhcCcchHHHHH
Q psy4871 210 SLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFV 288 (494)
Q Consensus 210 ~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (494)
.++.-++..+ ..+++||.|+....+....-.....+++ ...+++.++ + +-.
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l------------------------~~t~k~~~~--~--~~~ 283 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL------------------------WRTFKEIRK--L--RQL 283 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH------------------------HHHHHHHHh--C--hHH
Confidence 7777665554 4467787663100000000000111111 112222111 1 112
Q ss_pred HHHHHHHHHHccchHhHHHhHHHHHH-hcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCch--hHHHHhhHHHHHHH
Q psy4871 289 FMAFLAVFRAFTGVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRR--VLFLVSSAGCSLFS 364 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~ 364 (494)
..+++..+...-+...+......+.. ..|++. +.....++..+.+++|+++.+++.||+|.| +++..+.++..+..
T Consensus 284 ~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~ 363 (477)
T PF11700_consen 284 FLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIP 363 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 22333333333445666666666665 456664 555677778899999999999999999988 66666655553322
Q ss_pred HHHHH--HHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4871 365 FIAGL--YYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 442 (494)
Q Consensus 365 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~ 442 (494)
+.-.+ ..... ...+.+...+..++.+.+.+ +..+...++.+++.|++..+...|+....+...+++||.++
T Consensus 364 ~~g~~G~~~~~~------g~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~ 436 (477)
T PF11700_consen 364 LYGLFGFWPSFF------GLKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF 436 (477)
T ss_pred HHHHHHhhhccc------CcccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 11000 02345556666666666655 35667779999999999999999999999999999999999
Q ss_pred hchhhhcC
Q psy4871 443 FLMDKHIG 450 (494)
Q Consensus 443 ~~l~~~~~ 450 (494)
|.+.+..+
T Consensus 437 g~i~~~tg 444 (477)
T PF11700_consen 437 GLITDATG 444 (477)
T ss_pred HHHHHHhC
Confidence 99999444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=143.16 Aligned_cols=331 Identities=13% Similarity=0.074 Sum_probs=224.3
Q ss_pred cccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh----hCc-hhHHHhhHHHHHHHHHHHHHHh
Q psy4871 66 SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR----IGR-KWSLLMTGPITTASWIIAMYSR 140 (494)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~~~~i~~~~~~~a~ 140 (494)
........+..+.++ ..|+++..+|.+..+.-+--++..|+.|.+.|| +|| |+.++++.+..++.+.++-.++
T Consensus 27 ~~~~~~~yLl~fYTd--v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p 104 (467)
T COG2211 27 AFGIVVLYLLFFYTD--VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP 104 (467)
T ss_pred HHHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC
Confidence 333344444444445 789999999999999999999999999999995 885 5677788899999999888876
Q ss_pred h------HHHHHHHHHHHHhHhhhhhhhhhhheecccC-CCCchhHHHHHHHHHHHHHHHHHHhhhh-----------hh
Q psy4871 141 S------VLGLYVMRTLQGFSMAAIYVISPMYLGEISE-TSIRGTIGTLFQISCHLGILYTYVLGSE-----------LS 202 (494)
Q Consensus 141 ~------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----------~~ 202 (494)
+ ....++.-.+.+++......+-.++.+|+.+ ++||.+..++-..+..+|.++...+... .|
T Consensus 105 ~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g 184 (467)
T COG2211 105 DFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG 184 (467)
T ss_pred CcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Confidence 3 4556777888999999998899999999986 6789999999999998887665443322 36
Q ss_pred hHHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchh----h
Q psy4871 203 YMNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFR----E 277 (494)
Q Consensus 203 w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 277 (494)
|+..-.+.+++.++..+.. +-.+|.+. +.. ..+...+.+++ .
T Consensus 185 ~~~~~~~~~vi~~i~~l~~~~~v~ER~~----------------------~~~-----------~~~~~~~~~~~~~~~~ 231 (467)
T COG2211 185 YQGTALVLGVIGVILLLFCFFNVKERVV----------------------ETQ-----------PTKTGVKLKLKDSFLL 231 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccC----------------------ccc-----------cCcccccccHHHHHHH
Confidence 7777777777766665544 33444321 000 00001122233 3
Q ss_pred -hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc-CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHH
Q psy4871 278 -FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL 354 (494)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 354 (494)
++++.++.... ..++.+.+.+.......++.+.. |... .+...........+++.++...+.+|+|+|+++.
T Consensus 232 ~~~Nrp~~~~l~-----~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~ 306 (467)
T COG2211 232 IFKNRPLLLLLL-----MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL 306 (467)
T ss_pred HHccchHHHHHH-----HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH
Confidence 44544332222 11112222233333333333221 2222 3445556666777777999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCC-------cchhhHHHHHH
Q psy4871 355 VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS-------SNMKAVSCAVI 427 (494)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~ 427 (494)
.+.++..++.+++.+.. .++.+..++..++.+.+.+. ..+++|++++|... .+..|...|..
T Consensus 307 ~~~~~~~i~~~~~~f~~----------~~~~~l~~~~~~i~~~g~~~-~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~ 375 (467)
T COG2211 307 IGLLLLAVGYLLLYFTP----------AGSVVLIVVALIIAGVGTGI-ANPLPWAMVADTVDYGEWKTGVRREGIVYSGM 375 (467)
T ss_pred HHHHHHHHHHHHHHhhc----------CcchHHHHHHHHHHHHHhhc-cccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence 99999888888877652 12344444444565666554 45788899998863 34458889999
Q ss_pred HHHHHHHHHHHHHhhhchhh
Q psy4871 428 NILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 428 ~~~~~~~~~i~~~i~~~l~~ 447 (494)
..+.-+|.+++..+.|++.+
T Consensus 376 tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 376 TFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=157.95 Aligned_cols=175 Identities=19% Similarity=0.136 Sum_probs=133.0
Q ss_pred hHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHH-H--HHHhhHHHHHHH
Q psy4871 72 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWII-A--MYSRSVLGLYVM 148 (494)
Q Consensus 72 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~-~--~~a~~~~~l~~~ 148 (494)
..+|.+.++ .++.+..+.++..+...++..++.++.|+++||+|||++++++.++..++.+. . ..+++...++++
T Consensus 271 ~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (490)
T PRK10642 271 TYMPSYLSH--NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG 348 (490)
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 344554422 67888888888888899999999999999999999999988887654444332 2 223457778889
Q ss_pred HHHHHhHhhhhhhhhhhheecccCCCCchhHHHH-HHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHhh
Q psy4871 149 RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTL-FQISCHLGILYTYVLGSEL-----SYMNYLTYSLIIPIIFTVTFM 222 (494)
Q Consensus 149 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~ 222 (494)
|++.|++.+........++.|.+|++.|+.+.++ ++.+. ++..++|.+.+++ +|+.++++..+++++..+..+
T Consensus 349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~-~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 427 (490)
T PRK10642 349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV-LVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV 427 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 9999988777777778888999999999999987 45544 4445555555442 477777777777777777777
Q ss_pred ccCcchhHHHhh-----CChHHHHHHHHHHhc
Q psy4871 223 FMPESPYFYAIK-----NQEGKAIESLKWLRN 249 (494)
Q Consensus 223 ~~~esp~~l~~~-----~~~~~a~~~~~~~~~ 249 (494)
++||+|+|+.++ +|.+||++.+.++++
T Consensus 428 ~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 428 TMKETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred HhccccCCCCCCccccccchhhHHHHhhcccc
Confidence 889999998865 889999999998874
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-17 Score=151.78 Aligned_cols=336 Identities=17% Similarity=0.141 Sum_probs=198.2
Q ss_pred hcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHH--HHH-HHHHHHh-
Q psy4871 65 MSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITT--ASW-IIAMYSR- 140 (494)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~--i~~-~~~~~a~- 140 (494)
+..+...|..+...++ ..|++.+++|.+.++..+...+.+++.|.++||+|.||-++....+.. .+. +...+.+
T Consensus 21 f~~gi~~pF~~iWL~~--~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pl 98 (412)
T PF01306_consen 21 FIWGIFLPFFPIWLTQ--VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPL 98 (412)
T ss_dssp HHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHcc--ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666655532 369999999999999999999999999999999996665544332221 122 2222222
Q ss_pred ---hHH-HHHHHHHHHHhHhhhhhhhhhhheecccCCC--CchhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy4871 141 ---SVL-GLYVMRTLQGFSMAAIYVISPMYLGEISETS--IRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIP 214 (494)
Q Consensus 141 ---~~~-~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~~~w~~~f~~~~~~~ 214 (494)
|.+ ..+++-+..|+......|+.-+++.++...+ +-|++-.+-+.++.++..+++.+.. .+-+..|++....+
T Consensus 99 l~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~ 177 (412)
T PF01306_consen 99 LQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAA 177 (412)
T ss_dssp HHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHH
Confidence 222 2233333344444455566666665554322 2355555555555555555554443 35567788777666
Q ss_pred HHHHHHhhcc-CcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccc---hhh-hcCcchHHHHHH
Q psy4871 215 IIFTVTFMFM-PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTN---FRE-FMGRSNMKAFVF 289 (494)
Q Consensus 215 ~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~ 289 (494)
++..++.++. |+.++.....+. . ..++++.+ ..+ ++.+++|.-.+.
T Consensus 178 ~il~lll~~~~~~~~~~~~~~~~----------------~-------------~~~~~~~~~~~~~~l~k~~~fw~~~l~ 228 (412)
T PF01306_consen 178 IILLLLLLLLKPDVPPQAEVADA----------------L-------------GAKKDKVSLKDVLSLFKMRNFWFFVLF 228 (412)
T ss_dssp HHHHHHHHSS---SSSSS-SSTT----------------S-------------SS------HHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCchhhhhhcc----------------c-------------ccCCCCCcHHHHHHHhcchhHHHHHHH
Confidence 6555544333 333211000000 0 00111112 223 555555533222
Q ss_pred HHHHHHHHHccchHhHHHhHHHHHHhcCCC----c-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHH
Q psy4871 290 MAFLAVFRAFTGVQSIIAYANTIFASSETF----L-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFS 364 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 364 (494)
....... +..+-...+.++....-+ . .-++...+..+..++.-.+..++.+|+|.|+.++++..++.+-.
T Consensus 229 v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi 303 (412)
T PF01306_consen 229 VIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRI 303 (412)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 2222222 344444455555543211 1 23455666777788888999999999999999999999999998
Q ss_pred HHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHH-HHHHHHHHHHHHHhhh
Q psy4871 365 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVI-NILCTTLGLISYKLFF 443 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~i~~~i~~ 443 (494)
...++. ++++...+.-.+.+.-+.+...+.. -++++.+|++..++...+. +...+++.++.+.+.|
T Consensus 304 ~~~~~~------------~~~~~i~~~klLH~~e~~l~lva~f-kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G 370 (412)
T PF01306_consen 304 IGSGFA------------TNPWVISLIKLLHALEFPLLLVAAF-KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG 370 (412)
T ss_dssp HHHHT--------------SHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHhhh------------cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 887764 4666677777777777766555444 7899999999999999886 6888999999999999
Q ss_pred chhhhcC
Q psy4871 444 LMDKHIG 450 (494)
Q Consensus 444 ~l~~~~~ 450 (494)
.+.|.-|
T Consensus 371 ~lyd~~G 377 (412)
T PF01306_consen 371 YLYDRIG 377 (412)
T ss_dssp HHHHHHH
T ss_pred hhHhhcC
Confidence 9999544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-18 Score=168.75 Aligned_cols=382 Identities=10% Similarity=0.058 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHH
Q psy4871 51 GSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITT 130 (494)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~ 130 (494)
++++++. ..+..+...++....+..+++ .|+++.++.|++.+.+-++..+..++..++.+|..|-+.+-+|.++++
T Consensus 4 fl~~~~~-~~~~q~~~~g~~~~~lttiEr---RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~ 79 (539)
T PF03137_consen 4 FLVFLCL-LGLFQMMVSGYVNSSLTTIER---RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMG 79 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHH
Confidence 3343333 344447788888888999996 999999999999999999999999999999999888899999999999
Q ss_pred HHHHHHHHHh--------------------------------------------------hHHHHHHHHHHHHhHhhhhh
Q psy4871 131 ASWIIAMYSR--------------------------------------------------SVLGLYVMRTLQGFSMAAIY 160 (494)
Q Consensus 131 i~~~~~~~a~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~ 160 (494)
++++++++-+ -+..++++.++.|+|....+
T Consensus 80 ~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~ 159 (539)
T PF03137_consen 80 LGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLY 159 (539)
T ss_dssp ------------------------------------------------------------------------SSS-----
T ss_pred HHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCc
Confidence 9999887510 03567889999999999999
Q ss_pred hhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHHHHHHH
Q psy4871 161 VISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL--------------------------SYMNYLTYSLIIP 214 (494)
Q Consensus 161 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~--------------------------~w~~~f~~~~~~~ 214 (494)
+.+.+|+-|..++++-+.+.|+......+|.++|.++++.. .|+.-|.+.+.+.
T Consensus 160 tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 160 TLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887541 2777788888888
Q ss_pred HHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-h--cCcchHHHHHHHH
Q psy4871 215 IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-F--MGRSNMKAFVFMA 291 (494)
Q Consensus 215 ~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ 291 (494)
++..+.++++|+..+-. ++..++.+...++.. + ...++..+.+ ........+++ . ..+...++.++..
T Consensus 240 ~l~aipl~~FPk~lp~~--~~~~~~~~~~~~~~~---~-~~~~~~~~~~---~~~~~~~~~~df~~~l~~Ll~Np~f~~~ 310 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLPGT--SERQEEKESSERKEE---D-SDKDSFKDPK---SKKSFGKSIKDFPKALKRLLTNPVFMCL 310 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCccCCCc--ccccchhhhhhcchh---h-hhhhcccccc---cccchhhhhhhHHHHHHHHhcChHHHHH
Confidence 87777777776542111 000000000000000 0 0000000000 00001112222 1 1123344555566
Q ss_pred HHHHHHHccchHhHHHhHHHHHHhcCCCcchhHHH----HHHHHHHHHhhhhhhhhhcccC--chhHHHHhhHHHHHHHH
Q psy4871 292 FLAVFRAFTGVQSIIAYANTIFASSETFLPSDYIS----ILFAIILLVSIFPSTYYIDRAG--RRVLFLVSSAGCSLFSF 365 (494)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~ 365 (494)
.+...........+..|.|-|++.. ++.++.... .+...+..+|.+++|++.+|++ .|..+....+...++.+
T Consensus 311 ~la~~~~~~~~~G~~tF~pKylE~Q-F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~ 389 (539)
T PF03137_consen 311 ILAGVFESFIVSGFATFLPKYLESQ-FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVI 389 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence 6666666666778888999998764 333333333 3333455689999999999985 34444444444444333
Q ss_pred HHHHHHHh--h------hcccc------C--------------------------CC-ccc-hHhHHHHHHHHHHhhccc
Q psy4871 366 IAGLYYYV--T------IELQY------E--------------------------IP-YTS-WVPFLSISLLGVFFNLGF 403 (494)
Q Consensus 366 ~~~~~~~~--~------~~~~~------~--------------------------~~-~~~-~~~~~~~~~~~~~~~~~~ 403 (494)
++...... + -+..+ . .+ ... ...++..++..+......
T Consensus 390 ~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~ 469 (539)
T PF03137_consen 390 LYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQ 469 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcc
Confidence 31111000 0 00011 0 00 011 122222233333333444
Q ss_pred ccchhhhhcccCCcchhhHHHHHHHHHHH-HHHHHHHHhhhchhh
Q psy4871 404 GPLFTPLLSEYFSSNMKAVSCAVINILCT-TLGLISYKLFFLMDK 447 (494)
Q Consensus 404 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~~~~i~~~i~~~l~~ 447 (494)
.|.. ...-..+|+++|+.+.|+...+.. +|.+-+|.++|.+.|
T Consensus 470 ~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD 513 (539)
T PF03137_consen 470 VPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID 513 (539)
T ss_dssp ---------------------------------------------
T ss_pred cchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence 4554 556688999999999999986654 588999999999999
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-13 Score=129.25 Aligned_cols=386 Identities=14% Similarity=0.058 Sum_probs=233.6
Q ss_pred HHHHHHHHHHhhhcccchhhHH-Hhhhc---CCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh-hCchhHHHhhHH
Q psy4871 53 EAHACIAAFTTGMSFAWSAPVL-EELLS---KESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGP 127 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~ 127 (494)
+..+...-+...+++.-+..++ -.+.. + .+++|+++..-+.+.|..-.-+..+++|+++|| +|+|+++++|.+
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~--gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGD--GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc--cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 3334445566665444433333 23332 2 355999999888999888888899999999999 699999999999
Q ss_pred HHHHHHHHHHHHh--hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCC--chhHHHHHHHHHHHHHHHHHHhhhh---
Q psy4871 128 ITTASWIIAMYSR--SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI--RGTIGTLFQISCHLGILYTYVLGSE--- 200 (494)
Q Consensus 128 ~~~i~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~--- 200 (494)
+..+|.++.+.+. +...++++-++.++|.|..=+...++++|.+|+++ |-..++++.++.++|.+++|++.++
T Consensus 101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~ 180 (498)
T COG3104 101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI 180 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence 9999999999884 78899999999999999999999999999998654 6777888888999999999888776
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhC-----ChHHHHHHHHHHh----c------CChhhHHHHHHHHHH
Q psy4871 201 -LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN-----QEGKAIESLKWLR----N------KTADQVQSELQIIKQ 264 (494)
Q Consensus 201 -~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~-----~~~~a~~~~~~~~----~------~~~~~~~~~~~~~~~ 264 (494)
.+|...|.+.++-..+.++..+..+..-.....+. +..+......++- . .+............-
T Consensus 181 ~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 260 (498)
T COG3104 181 NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISI 260 (498)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999888877666655544432110000000 0001110000000 0 000000000000000
Q ss_pred c------ccc-cccccchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc--CCCcchhHHHHHHHHHHHH
Q psy4871 265 N------TSK-NVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS--ETFLPSDYISILFAIILLV 335 (494)
Q Consensus 265 ~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 335 (494)
. .+. +.++.. .+.++-...-++++...+.....--+...+..|.....+.. |++.++.+..++..+.-++
T Consensus 261 ~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii 339 (498)
T COG3104 261 LIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIIL 339 (498)
T ss_pred HHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHH
Confidence 0 000 000000 00000000001111111111111122344555554444332 3445788888888888888
Q ss_pred hhhhhhhhhcccCch-------hHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchh
Q psy4871 336 SIFPSTYYIDRAGRR-------VLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFT 408 (494)
Q Consensus 336 ~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (494)
.+++..++..|++++ .-+.++..+++.+.+++.......+.. ....+.++.+...++..++ .+...|+..
T Consensus 340 ~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~--~~~~s~~~lil~y~l~s~g-EL~iSpvGL 416 (498)
T COG3104 340 FSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGP--SGLVSVWWLVLSYVLQSFG-ELFISPVGL 416 (498)
T ss_pred HHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcCHHHHHHHHHHHHHH-HHHhCHHHH
Confidence 888888877775433 235566666777766666553222110 1123445555555555554 566778888
Q ss_pred hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhc
Q psy4871 409 PLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 444 (494)
Q Consensus 409 ~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~ 444 (494)
+++..+.|+...+..++........+..++..+.+.
T Consensus 417 s~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~ 452 (498)
T COG3104 417 SMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL 452 (498)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 999999999998888888887777777777777663
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-15 Score=140.03 Aligned_cols=177 Identities=18% Similarity=0.182 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHH-HhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCc-hhHHHhhH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVL-EELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGR-KWSLLMTG 126 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~ 126 (494)
.|..+.++.+..++.+...+.+.+.. |.+++- |.+.+.+..|++.++..+|.+++++..|+...|.|. |+.++.+.
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l--D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL--DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhc--CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 66777778888888888887776654 555532 577888899999999999999999999999999996 88899999
Q ss_pred HHHHHHHHHH-HHH---h-hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy4871 127 PITTASWIIA-MYS---R-SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 201 (494)
Q Consensus 127 ~~~~i~~~~~-~~a---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 201 (494)
++..+++++. +++ + ..+.++++|++.|+|.|.. ....+|+++....++|.++++....+..+|.++||.++..+
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 9999999988 432 3 6788999999999997655 67899999998889999999999998888888888887553
Q ss_pred ------h-----------hHHHHHHHHHHHHHHHHHh-hccCcch
Q psy4871 202 ------S-----------YMNYLTYSLIIPIIFTVTF-MFMPESP 228 (494)
Q Consensus 202 ------~-----------w~~~f~~~~~~~~~~~~~~-~~~~esp 228 (494)
| +..+-|+.+++.++..+.. +++.|.+
T Consensus 189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 1 2345667777777666554 5666654
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-14 Score=140.11 Aligned_cols=299 Identities=13% Similarity=0.132 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHH
Q psy4871 50 FGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 129 (494)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 129 (494)
...+++.++..+..++..+++...+..+++ .++++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|.+++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiEr---RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m 172 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIER---RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLM 172 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhh---hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHH
Confidence 345556677777788877888889999996 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-------------------h--------------------------------H-HHHHHHHHHHHhHhh
Q psy4871 130 TASWIIAMYSR-------------------S--------------------------------V-LGLYVMRTLQGFSMA 157 (494)
Q Consensus 130 ~i~~~~~~~a~-------------------~--------------------------------~-~~l~~~r~l~G~~~g 157 (494)
+++++++++-+ + + ..++++.++.|+|..
T Consensus 173 ~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T 252 (735)
T KOG3626|consen 173 GLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT 252 (735)
T ss_pred HHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence 99999988621 0 1 256788999999999
Q ss_pred hhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-----------------------hhHHHHHHHHHHH
Q psy4871 158 AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----------------------SYMNYLTYSLIIP 214 (494)
Q Consensus 158 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----------------------~w~~~f~~~~~~~ 214 (494)
..++.+.+|+-|...+++-+..+++......+|.++|.++++.. .|+.-|++.+.+.
T Consensus 253 pi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~ 332 (735)
T KOG3626|consen 253 PIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALL 332 (735)
T ss_pred CCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888661 3888899999999
Q ss_pred HHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-h--cCcchHHHHHHHH
Q psy4871 215 IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-F--MGRSNMKAFVFMA 291 (494)
Q Consensus 215 ~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ 291 (494)
++..+.++++|....- ..++.++ +..+..+. +.. ...........+++ . ..+...+++++..
T Consensus 333 ~~~a~p~f~fPk~lp~---~~~~~~~-~~~~~~k~-~~~----------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~ 397 (735)
T KOG3626|consen 333 LFSAVPLFFFPKELPK---SQKRKRA-RDLHVLKT-ESG----------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLV 397 (735)
T ss_pred HHHHHHHHhCcccCcc---ccccchh-hhhccccc-ccc----------cccCCcchhhhHHHHHHHHHHHhcCchHHHH
Confidence 9998888888765310 0000000 00000000 000 00000111112222 0 0112333445556
Q ss_pred HHHHHHHccchHhHHHhHHHHHHhc-CCCc-chhHHH-HHHHHHHHHhhhhhhhhhcccC--chhHHHHhhHHHHHHHHH
Q psy4871 292 FLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYIS-ILFAIILLVSIFPSTYYIDRAG--RRVLFLVSSAGCSLFSFI 366 (494)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~ 366 (494)
.+........+..+..|+|-|++.. |.+. .+..+. .+...+..+|.+++|+++.|+. .|....+.++...+.++.
T Consensus 398 ~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 398 VLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 6666666666788999999999764 3332 222222 3333444588899999999886 344444444444444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=126.73 Aligned_cols=320 Identities=13% Similarity=0.117 Sum_probs=211.3
Q ss_pred CchhHHHHHHHHhHhhhhhchHhhhhhhCc-hhHHHhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhHhhhhhhhhh
Q psy4871 89 NEGSWVVAIIEIGNYLSPIPAGMLVNRIGR-KWSLLMTGPITTASWIIAMYSRS---VLGLYVMRTLQGFSMAAIYVISP 164 (494)
Q Consensus 89 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~a~~---~~~l~~~r~l~G~~~g~~~~~~~ 164 (494)
+..+...++..+..++.+|+.|.++|+.|+ |+.+-....+..++.++..++++ ++..++.-.+..++.......-.
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 345778888899999999999999999995 55555666666667777777654 44455667788888888889999
Q ss_pred hheecccCCCCchhHHHHHHHHHHHHHHHHHHhh------h----------------hhhhHHHHHHHHHHHHHHHHHh-
Q psy4871 165 MYLGEISETSIRGTIGTLFQISCHLGILYTYVLG------S----------------ELSYMNYLTYSLIIPIIFTVTF- 221 (494)
Q Consensus 165 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~------~----------------~~~w~~~f~~~~~~~~~~~~~~- 221 (494)
+++.+..++++-++..+.-.....+|..+.-++. . ...=|..+.+.++..++..+-.
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 9999999998877776665444444444433322 1 0145777777777766665444
Q ss_pred hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhhhcCcchHHHHHHHHHHHHHHHccc
Q psy4871 222 MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTG 301 (494)
Q Consensus 222 ~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (494)
+..++.++- +.+ .........++ -+.++++.+.++. +..+.+..+...-+
T Consensus 218 ~~v~~~~~~---~~~--------------~~~~l~~g~k~---------L~~t~k~i~~~~~----i~~FLiA~~~~~DG 267 (438)
T COG2270 218 LNVHDAEKI---SSP--------------PPTALRNGFKE---------LKSTFKEIRGRKN----LVLFLIARFFYIDG 267 (438)
T ss_pred hcccccccc---ccc--------------chHHHHHHHHH---------HHHHHHHHhcccc----hHHHHHHHHHHHhh
Confidence 555554320 000 00011111111 1223334222222 22233333333345
Q ss_pred hHhHHHhHHHHHH-hcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhcccc
Q psy4871 302 VQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQY 379 (494)
Q Consensus 302 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (494)
.+.+......+-. ..|.+. +.........+..++|+++.|++.||+|.|+++..+.++..+.++...+.
T Consensus 268 v~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--------- 338 (438)
T COG2270 268 VNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--------- 338 (438)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc---------
Confidence 6667777666665 556654 55567777889999999999999999999998888887777666554442
Q ss_pred CCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhcCC
Q psy4871 380 EIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGK 451 (494)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~~ 451 (494)
.......++..+.+.+.+ +.++..-++..+.+|++..++..|+++..+...++++|++++.+.+-.+.
T Consensus 339 ---~~~~~f~i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 339 ---EGELDFWILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred ---cccHHHHHHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 123333444455555544 34556678999999999999999999999999999999999999884443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-14 Score=116.45 Aligned_cols=133 Identities=26% Similarity=0.324 Sum_probs=116.8
Q ss_pred HHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCC
Q psy4871 94 VVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISET 173 (494)
Q Consensus 94 ~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~ 173 (494)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34556788899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh-hccCc
Q psy4871 174 SIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF-MFMPE 226 (494)
Q Consensus 174 ~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~-~~~~e 226 (494)
++|++..++......+|..+++.+... .+|++.+++.++..++..+.. ++.||
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999998888766 489999998888777766555 34444
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-12 Score=116.32 Aligned_cols=316 Identities=10% Similarity=0.060 Sum_probs=204.6
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhC-----chhHHHh-hHHHHHHHHHHHHHH-----h--------h-H
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG-----RKWSLLM-TGPITTASWIIAMYS-----R--------S-V 142 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~-~~~~~~i~~~~~~~a-----~--------~-~ 142 (494)
|++++..-.+.+.++..+... ..+.+|+.+|+.+ ||..+++ |.++...+..+..++ . . .
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 788888888888888887766 4899999999999 8866654 555555555555442 2 1 1
Q ss_pred --HHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHH--HHHH
Q psy4871 143 --LGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTY--SLII 213 (494)
Q Consensus 143 --~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~--~~~~ 213 (494)
....+...+.|+|.+...+...+++.|..|+++|+++.++......+|.+++.++.+.+ .-|..-.+ .+++
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i 167 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI 167 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence 23455678889999999999999999999999999999999999999999988887653 22322222 2222
Q ss_pred HHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHH
Q psy4871 214 PIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAF 292 (494)
Q Consensus 214 ~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 292 (494)
.++..++..+=.|.+.. ... ...+.++...+..+++ ..++..++. +...+
T Consensus 168 ~~~l~~ia~wg~E~r~~----------------------~~~------~~~~~~~~~f~~a~~~~~~~~~a~~f-~~fl~ 218 (403)
T PF03209_consen 168 ALLLNLIALWGQEPRRS----------------------RRA------AAAERPRPPFREAWRQVWASPQARRF-FVFLF 218 (403)
T ss_pred HHHHHHHHHHhcccCCc----------------------ccc------cCCCCCCccHHHHHHHHHhCCChhHH-HHHHH
Confidence 22222333332332210 000 0000000111223344 334433322 22222
Q ss_pred HHHHHHccchHhHHHhHHHH-HH-----hcCCCc-chhHHHHHHHHHHHHhhhhhhhhhc-ccCchhHHHHhhHHHHHHH
Q psy4871 293 LAVFRAFTGVQSIIAYANTI-FA-----SSETFL-PSDYISILFAIILLVSIFPSTYYID-RAGRRVLFLVSSAGCSLFS 364 (494)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~ 364 (494)
+.. +.+++... ++ -.|.+. +...+....+.+.+++..+.+++.. |.++++....++..+.+++
T Consensus 219 l~t---------~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f 289 (403)
T PF03209_consen 219 LGT---------LAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAF 289 (403)
T ss_pred HHH---------HHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 111 11222222 12 124444 5667777888888888888887765 6788888888888888888
Q ss_pred HHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhc
Q psy4871 365 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 444 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~ 444 (494)
.++...... .+.+......++++++.+....... +.+.+..+++..|..+|.-...+.++..++..+.|.
T Consensus 290 ~lii~a~~~---------~~~~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~ 359 (403)
T PF03209_consen 290 ALIILAGPL---------GSPWLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGA 359 (403)
T ss_pred HHHHHHHhc---------ccchHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665433 3566667777777777665443333 566778888889999999999999999999999999
Q ss_pred hhh
Q psy4871 445 MDK 447 (494)
Q Consensus 445 l~~ 447 (494)
+.|
T Consensus 360 ~~D 362 (403)
T PF03209_consen 360 LRD 362 (403)
T ss_pred HHH
Confidence 988
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.9e-13 Score=126.66 Aligned_cols=352 Identities=17% Similarity=0.157 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCC-CchhHHHHH----HHHhHhhhhhchHhhhhhhCchhHHHhh
Q psy4871 51 GSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSP-NEGSWVVAI----IEIGNYLSPIPAGMLVNRIGRKWSLLMT 125 (494)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~g~~~s~----~~~~~~i~~~~~g~l~dr~Grr~~l~~~ 125 (494)
.+.....+-.|..++......+..+.... .++.+. ...+..... ..+...+.++..|.++||+|||..+.+.
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~c---t~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~ 98 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLAC---TFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLP 98 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhc---ccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHH
Confidence 33444445555555555555555444331 222221 122333333 3677788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhH--hhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh---
Q psy4871 126 GPITTASWIIAMYSRSVLGLYVMRTLQGFS--MAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE--- 200 (494)
Q Consensus 126 ~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--- 200 (494)
.+...+..+...+.. +|.++ +.|+. .+.......++++|....++|....++....+..+..++|.+++.
T Consensus 99 ~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~ 173 (463)
T KOG2816|consen 99 LFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK 173 (463)
T ss_pred HHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 998888887777655 44444 33332 345667888999999999999999999999888888888888876
Q ss_pred -hhhHHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhhh
Q psy4871 201 -LSYMNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREF 278 (494)
Q Consensus 201 -~~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (494)
.+.-..|.+..+..++..+.. +++||+-.- +.+.+ + ...... .+.... ......++..
T Consensus 174 ~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~-~--~~~~~~--~~~~~~------------~~~~~~~~~~ 233 (463)
T KOG2816|consen 174 FLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD-A--TLRELT--PGSLDS------------SHVADAFQSL 233 (463)
T ss_pred hcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc-c--cccccC--CCcccc------------hhhhhhhhhh
Confidence 366678888888877776555 778887410 00000 0 000000 000000 0000011111
Q ss_pred cCcchHHHHHHHHHHHHH---HHccchH-hHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhh-hhhcccCchhH
Q psy4871 279 MGRSNMKAFVFMAFLAVF---RAFTGVQ-SIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPST-YYIDRAGRRVL 352 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~ 352 (494)
.+....+..+......++ ....+.. ....|+. ...+++. .-+......+....++.++.. .+...++.|++
T Consensus 234 ~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~---~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~ 310 (463)
T KOG2816|consen 234 TKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLK---AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRL 310 (463)
T ss_pred cccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEe---eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 111111111111221111 1111100 1111111 1224443 444556666677777777665 77788898888
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHH
Q psy4871 353 FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCT 432 (494)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 432 (494)
...++..-.+....+++. ...|..+....+..+. ....|...+..+...+++.+|++.++...+..
T Consensus 311 i~lGl~~~~~~~~~~af~------------~~~w~~~~~~v~~~~~--~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~ 376 (463)
T KOG2816|consen 311 ISLGLLSEFLQLLLFAFA------------TETWMMFAAGVVVALA--GIVFPAIRAFASILVSPEEQGKVFGIISGIEG 376 (463)
T ss_pred hhHHHHHHHHHHHHHHHh------------ccchhhhHHHHHHHhh--cchhHHHHhHHHhhcccccccchhhHHHHHHH
Confidence 888888888888888775 3555544444444333 23445666888889999999999999999999
Q ss_pred HHHHHHHHhhhchhh
Q psy4871 433 TLGLISYKLFFLMDK 447 (494)
Q Consensus 433 ~~~~i~~~i~~~l~~ 447 (494)
+.+.++|.+++.+..
T Consensus 377 l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 377 LSGVVSPALYGNIFA 391 (463)
T ss_pred HhhhhhHHHHHHHHH
Confidence 999999999999977
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=137.32 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=120.8
Q ss_pred hHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheeccc
Q psy4871 92 SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEIS 171 (494)
Q Consensus 92 g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 171 (494)
.+...+..++.+++.++.|+++||+|||++++++.++.++++++.+++++...+++.+++.|++.+..++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566777899999999999999999999999999999999999999988888889999999988888999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHhhccCcch
Q psy4871 172 ETSIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTYSLIIPIIFTVTFMFMPESP 228 (494)
Q Consensus 172 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~esp 228 (494)
|.++|++++++......+|.+++|++++.+ +...+|++.+++.++..++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999998753 445677777777777777777789874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=124.44 Aligned_cols=143 Identities=12% Similarity=0.196 Sum_probs=119.3
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
+++.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+......++++.+.+++.+++.+++.|...+.
T Consensus 246 ~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~ 325 (393)
T PRK15011 246 ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGI 325 (393)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999988888888889999999999999999888777666665555556778888888999999888887777
Q ss_pred hhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhccCc
Q psy4871 163 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMPE 226 (494)
Q Consensus 163 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~~e 226 (494)
...+..|.+|+ +|+++.++++....+|..+++.+++. ++|+..|++.+++.++..+..+++||
T Consensus 326 ~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 326 GMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 78888999885 59999999888888888888877766 58999999988888887777777664
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-13 Score=129.97 Aligned_cols=144 Identities=19% Similarity=0.237 Sum_probs=120.7
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
+.+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778899999999999999999999999999999999999999999889889999999999999999998888888
Q ss_pred hhhheecccCCCCchhHHHH-HHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh-hccCc
Q psy4871 163 SPMYLGEISETSIRGTIGTL-FQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF-MFMPE 226 (494)
Q Consensus 163 ~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~-~~~~e 226 (494)
...++.|.+|++.|+...+. ++....+|.++++.+.+. .||+..|.+.+++.++..++. +.+++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999988877655 566677788777777665 489999998888776655444 44443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-11 Score=110.85 Aligned_cols=246 Identities=12% Similarity=0.068 Sum_probs=151.6
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
++++++.|++.+....+....+..++.|.++||+|||+..++.+++.+++++. -..++++.++++|++.|++....+.+
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~ 141 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSA 141 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999864 45689999999999999999998887
Q ss_pred hhhhe-eccc----CCCCchhHHHHHH-HHHHHHHHHHHHhhhh----h--hhHHHHHHHHHHHHHHHHHh-hccCcchh
Q psy4871 163 SPMYL-GEIS----ETSIRGTIGTLFQ-ISCHLGILYTYVLGSE----L--SYMNYLTYSLIIPIIFTVTF-MFMPESPY 229 (494)
Q Consensus 163 ~~~~i-~e~~----~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~----~--~w~~~f~~~~~~~~~~~~~~-~~~~esp~ 229 (494)
--++. .|+- |++..+...+... ...++-.+.+++++.. . |-..+|....++.++..+++ ...+|.+.
T Consensus 142 FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 142 FESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 76554 4442 2222222222222 2223333444445444 2 33678888888877776655 34455321
Q ss_pred HHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHh
Q psy4871 230 FYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAY 308 (494)
Q Consensus 230 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (494)
+..+..+..+. .+..++. .+++ +.+.+.........+.+.....|
T Consensus 222 ---------------------~~~~~~~~~~~---------~~~a~~~i~~d~----ril~LG~~qslFE~smy~FVflW 267 (354)
T PF05631_consen 222 ---------------------DTSSSSSLSGS---------FREAWRAILSDP----RILLLGLIQSLFEGSMYLFVFLW 267 (354)
T ss_pred ---------------------CcccccchHHH---------HHHHHHHHHcCc----hhHHHHHHHHHHHHHHHHheeee
Confidence 00000000000 0011222 2222 33444444445554445556667
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhh-cccCchhHHHHhhHHHHHHH
Q psy4871 309 ANTIFASSETFLPSDYISILFAIILLVSIFPSTYYI-DRAGRRVLFLVSSAGCSLFS 364 (494)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~ 364 (494)
.|.+- ..+...+-+.+...+.++.++|+.+..++. ++......+...+.+.++++
T Consensus 268 tPaL~-~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l 323 (354)
T PF05631_consen 268 TPALD-PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSL 323 (354)
T ss_pred eceec-CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 78765 222223667777778888888888886554 44333344444443333333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=114.68 Aligned_cols=341 Identities=11% Similarity=0.152 Sum_probs=214.5
Q ss_pred CCCCCCCchh-HHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4871 83 PIPMSPNEGS-WVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 83 ~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
+.|++..|+. -+.-+..-.+....++...+.|..|.|++++++.+...+..++..+.++...+-+..++.|++.+. ..
T Consensus 34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-ev 112 (412)
T PF01770_consen 34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EV 112 (412)
T ss_pred ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HH
Confidence 4788888873 566666777788889999999999999999999999999999999999999999999999999766 57
Q ss_pred hhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhC
Q psy4871 162 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL------SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 235 (494)
Q Consensus 162 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~------~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~ 235 (494)
+-.+|+--..++++-.++.+....+..+|..++.++|..+ +++..+++......+.++..+++|..++...-|+
T Consensus 113 ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r 192 (412)
T PF01770_consen 113 AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR 192 (412)
T ss_pred HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence 7889999999999888999888888888888888887662 5677777777777777777788887665443333
Q ss_pred ChHHHHHHHHHHhcCChhhHHHHHHHHHHcccc--ccccc----chhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhH
Q psy4871 236 QEGKAIESLKWLRNKTADQVQSELQIIKQNTSK--NVERT----NFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYA 309 (494)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (494)
+.++... .......+..+..++..+.++..+. ...+. -+++++. .+..+.++...++.....++...+..|.
T Consensus 193 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~y~~~~ll~WSlWWa~atcgy~qv~nYv 270 (412)
T PF01770_consen 193 KPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKS-CYSNPRLLLWSLWWAFATCGYYQVINYV 270 (412)
T ss_pred cCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 2211110 0000000000000000000000000 00001 1111111 1223344555666666667778888888
Q ss_pred HHHHHhcCCC----cchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHH--HHHHHHHHHHHHHhhhccccCCCc
Q psy4871 310 NTIFASSETF----LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAG--CSLFSFIAGLYYYVTIELQYEIPY 383 (494)
Q Consensus 310 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 383 (494)
..+.++...+ .-.+.+-....+.+.++++..|++-.++.+...+..+... .+.+++++.. ..
T Consensus 271 Q~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~------------t~ 338 (412)
T PF01770_consen 271 QSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF------------TG 338 (412)
T ss_pred HHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH------------hh
Confidence 8888776211 1244555556666777888888886565554433333332 2333333322 24
Q ss_pred cchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Q psy4871 384 TSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 439 (494)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~ 439 (494)
+.|...+..+++...+.+... +...-++.....+.-|...|+.+.+..+-..+..
T Consensus 339 ~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT 393 (412)
T PF01770_consen 339 NIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQTILT 393 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHHheE
Confidence 667777888888877776443 3334455555566667888877766655554433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=125.79 Aligned_cols=140 Identities=15% Similarity=0.237 Sum_probs=118.8
Q ss_pred CCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh----hHHHHHHHHHHHHhHhhhhhhhh
Q psy4871 88 PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR----SVLGLYVMRTLQGFSMAAIYVIS 163 (494)
Q Consensus 88 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~----~~~~l~~~r~l~G~~~g~~~~~~ 163 (494)
....+.+.++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+..
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999999999999999999999998877776632 34667888999999999988999
Q ss_pred hhheecccCCCCchhHHHHHH-HHHHHHHHHHHHhhhh----------hhhHHHHHHHHHHHHHHHHHh-hccCcc
Q psy4871 164 PMYLGEISETSIRGTIGTLFQ-ISCHLGILYTYVLGSE----------LSYMNYLTYSLIIPIIFTVTF-MFMPES 227 (494)
Q Consensus 164 ~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~----------~~w~~~f~~~~~~~~~~~~~~-~~~~es 227 (494)
..++.|++|+++|+++.++.+ ....+|.++||.+++. +||+..|.+.+++.++..++. ++++|+
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999997 6678888888888765 259999998888877776555 666765
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-12 Score=120.45 Aligned_cols=156 Identities=19% Similarity=0.279 Sum_probs=137.5
Q ss_pred ccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchh-HHHhhHHHHHHHHHHHHHHhhHHHH
Q psy4871 67 FAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKW-SLLMTGPITTASWIIAMYSRSVLGL 145 (494)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~i~~~~~~~a~~~~~l 145 (494)
........|.+.++ .++.++.+.+++.+...++..++.++.|++.||+|||+ .+..+..+..++.++..+.++.+.+
T Consensus 191 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 268 (352)
T cd06174 191 YYGLLTYLPLYLQE--VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALL 268 (352)
T ss_pred HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33344455655542 44889999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh
Q psy4871 146 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF 221 (494)
Q Consensus 146 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~ 221 (494)
.+..++.|++.+...+....++.|..|+++|++..++......+|..+++.+.+. .+|++.+.+.+++.++..+..
T Consensus 269 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988876 489999999999988877665
Q ss_pred hcc
Q psy4871 222 MFM 224 (494)
Q Consensus 222 ~~~ 224 (494)
+++
T Consensus 349 ~~~ 351 (352)
T cd06174 349 LLL 351 (352)
T ss_pred eec
Confidence 543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=122.77 Aligned_cols=136 Identities=12% Similarity=0.085 Sum_probs=117.6
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHhHhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSV--LGLYVMRTLQGFSMAAIY 160 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~--~~l~~~r~l~G~~~g~~~ 160 (494)
+++.++.+.+++.+.+.++..++.++.|+++||+|||+.+.++.++.+++.++..+.++. ..+++..++.|++.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 313 (377)
T TIGR00890 234 SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTI 313 (377)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccch
Confidence 778888889999999999999999999999999999999999999999888887776643 335566788898888888
Q ss_pred hhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHH
Q psy4871 161 VISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFT 218 (494)
Q Consensus 161 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~ 218 (494)
+....++.|.+|+++|+++.++......+|..++|.+.+. .||++.|.+.+++.++..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 8888899999999999999999999999999999887765 589999988887766543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.3e-12 Score=121.46 Aligned_cols=150 Identities=18% Similarity=0.164 Sum_probs=124.7
Q ss_pred HHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy4871 73 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQ 152 (494)
Q Consensus 73 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~ 152 (494)
.+|.+.+ +.|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.
T Consensus 242 ~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (406)
T PRK11551 242 WLPSLLV---GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318 (406)
T ss_pred HHHHHHH---hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3566664 7789999999999999999999999999999999999999888777777777777777888888888899
Q ss_pred HhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHhhccC
Q psy4871 153 GFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLIIPIIFTVTFMFMP 225 (494)
Q Consensus 153 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~ 225 (494)
|++.+...+...+++.|.+|+++|++..++.+....+|..++|.+.+.+ +|...++......++..+..+.+.
T Consensus 319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988888888899999999999999999999999999999999988774 456666666666555555544443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=119.04 Aligned_cols=142 Identities=11% Similarity=0.104 Sum_probs=120.0
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
+.+. .+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+..++.
T Consensus 245 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~ 322 (399)
T PRK05122 245 ARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPA 322 (399)
T ss_pred Hccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHH
Confidence 4444 34577778889999999999999999999999999999988888888888888888889999999999988888
Q ss_pred hhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhccCc
Q psy4871 163 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMPE 226 (494)
Q Consensus 163 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~~e 226 (494)
....+.|.+|+++|+++.++++....+|..+++.+.+. .+|++.|++.+++.++..+..+++++
T Consensus 323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 323 LGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888899999999999999999888888777766555 48999999988888777766655544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-11 Score=115.89 Aligned_cols=142 Identities=14% Similarity=0.238 Sum_probs=120.1
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
+++.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..++.+...+.++.+.+++.+++.|++.+...+.
T Consensus 229 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 308 (375)
T TIGR00899 229 ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGI 308 (375)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999988888888888999999999999999998888777766666667788888888999999999988888
Q ss_pred hhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhccC
Q psy4871 163 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMP 225 (494)
Q Consensus 163 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~~ 225 (494)
...++.|..|+ +++.+.++......+|..+++.+++. .+|+..|++.+++.++..+...+++
T Consensus 309 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 309 GMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence 88999998876 46799999988888898888887765 4899999998888887777666554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=116.23 Aligned_cols=138 Identities=10% Similarity=0.066 Sum_probs=118.4
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
+.+.+ +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.
T Consensus 245 ~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 322 (392)
T PRK12382 245 SKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPA 322 (392)
T ss_pred hcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHH
Confidence 44443 3566777788888999999999999999999999999999999888888888888889999999999988888
Q ss_pred hhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhh
Q psy4871 163 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFM 222 (494)
Q Consensus 163 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~ 222 (494)
....+.|.+|+++|+++.++.+....+|..+++.+.+. .+|+..|.+.+++.++..+..+
T Consensus 323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 323 LGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999998888887766 4899999998888777665543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.7e-11 Score=112.75 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=122.4
Q ss_pred hHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4871 72 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 151 (494)
Q Consensus 72 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l 151 (494)
...|.+.+ +.|.++.+.|++.+...++..++.++.+++.||+|+|+.+.++.++.++..++.+++++.+.+++.+++
T Consensus 226 ~~~~~~l~---~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l 302 (382)
T TIGR00902 226 GFSAIYWQ---AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQIL 302 (382)
T ss_pred HHHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence 34455553 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhhhhhhhhhheecccCCCCchhHHHHHH-HHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHH
Q psy4871 152 QGFSMAAIYVISPMYLGEISETSIRGTIGTLFQ-ISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVT 220 (494)
Q Consensus 152 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~ 220 (494)
.|++.+...+....++.+. |+++|+.+.++++ ...++|..+++.+++. +++ ..|.+.++++++..++
T Consensus 303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9888999999875 4667788888777766 354 4566666666655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-11 Score=118.99 Aligned_cols=133 Identities=18% Similarity=0.150 Sum_probs=115.7
Q ss_pred hhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecc
Q psy4871 91 GSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEI 170 (494)
Q Consensus 91 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~ 170 (494)
.+.+.+++.++..++.+..|+++||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 45666777888889999999999999999999999988888888777788888899999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhc
Q psy4871 171 SETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMF 223 (494)
Q Consensus 171 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~ 223 (494)
.|+++||+.+++......+|..++|.+++. .+|++.|++.+++.++..+..++
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888888888775 48999999998888777665543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=119.85 Aligned_cols=146 Identities=13% Similarity=0.106 Sum_probs=119.4
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhh--CchhHHHh--hHHHHHHHHHHHHHHhhHHHHH
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI--GRKWSLLM--TGPITTASWIIAMYSRSVLGLY 146 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~--~~~~~~i~~~~~~~a~~~~~l~ 146 (494)
...+|.+.+ +.+.+..+.+++.++..++..+++++.|+++||. ++|+..++ +.++.+++.+++.+.++++.++
T Consensus 261 ~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 337 (455)
T TIGR00892 261 IIFLVPYAK---DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLV 337 (455)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 344555554 7789999999999999999999999999999983 34433333 3444455556667788999999
Q ss_pred HHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy4871 147 VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLIIPIIFTV 219 (494)
Q Consensus 147 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~ 219 (494)
+.+++.|++.+...+...+++.|.+|++++++..++++....+|.+++|.+++.+ +|++.|++.+++.++..+
T Consensus 338 i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 338 IYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988763 599999998887766554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.8e-11 Score=114.22 Aligned_cols=352 Identities=15% Similarity=0.183 Sum_probs=200.7
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhh---C--chhHHHhhHHHHHHHHHHHHHH----hh
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI---G--RKWSLLMTGPITTASWIIAMYS----RS 141 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~---G--rr~~l~~~~~~~~i~~~~~~~a----~~ 141 (494)
.+..+.+++ ++++++++.....+...+...+ -+++|.++|.+ | ||+-++++.++..++.+..+.. .+
T Consensus 10 ~~~~~~l~~---~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s 85 (433)
T PF03092_consen 10 LAIYPFLKD---DLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS 85 (433)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch
Confidence 345577774 8999999999988888888776 67789999975 3 5666666777776666655553 35
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhheecccCC--CCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHH
Q psy4871 142 VLGLYVMRTLQGFSMAAIYVISPMYLGEISET--SIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPI 215 (494)
Q Consensus 142 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~ 215 (494)
.....+.-++..+|......++-+++.|.... +.||...+.......+|.+++..+++. .+++..|.+.+++.+
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~ 165 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPL 165 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHH
Confidence 66667777888899999999999999998843 336777778777788888888777665 478888988888777
Q ss_pred HHHHHhhcc-CcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHH
Q psy4871 216 IFTVTFMFM-PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFL 293 (494)
Q Consensus 216 ~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 293 (494)
+..+..+++ +|.++ +..+. ..... ++......... ++....+++ ++.+..+++.....++
T Consensus 166 l~~~~~~~~~~e~~~------~~~~~---~~~~~---~~~~~~~~~~~------~~~~~~l~~~~~~~~i~~~~~~~~~~ 227 (433)
T PF03092_consen 166 LMLIVALFLLEERKV------RPADE---VFSFG---KEEVPCLFGSF------REQLSELWRALQQRAIWQPILFFIFF 227 (433)
T ss_pred HHHHHHHHhhhhccc------cccch---hhccc---ccccchhhHHH------HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 766555444 43110 00000 00000 00000000000 001112233 4444444444411111
Q ss_pred HHHHHccchHh-HHHhHHHHHHhcCCCcchh---HHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHH
Q psy4871 294 AVFRAFTGVQS-IIAYANTIFASSETFLPSD---YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGL 369 (494)
Q Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 369 (494)
..+.... ... ..+|...... |.+.+.. ....+..++.++|..+......+..-|+++....++..+..+.-..
T Consensus 228 ~~~~~~~-~~a~~fy~~~~~~~--gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~ 304 (433)
T PF03092_consen 228 FNLPPSI-SSASSFYFQTDALG--GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLL 304 (433)
T ss_pred HHhccCC-CCccEEEEEecccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEE
Confidence 1111111 111 1112111111 2222332 3334455555566666655555556666665555544433322111
Q ss_pred HHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhc
Q psy4871 370 YYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI 449 (494)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~ 449 (494)
..... +...+.++. +..+.-.++......+.+.|.. .+++|+.|+...|+..++..++.++|..++..+...+.+.-
T Consensus 305 lv~~~-n~~~Gi~d~-~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 305 LVTRW-NLDLGIPDQ-WFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred EEEEE-eeeeCcCCe-EEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 10000 111111122 3223333444444455566666 78999999999999999999999999999999999988833
Q ss_pred C
Q psy4871 450 G 450 (494)
Q Consensus 450 ~ 450 (494)
+
T Consensus 382 ~ 382 (433)
T PF03092_consen 382 G 382 (433)
T ss_pred C
Confidence 3
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-10 Score=113.74 Aligned_cols=155 Identities=13% Similarity=0.031 Sum_probs=114.7
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh--hH--HHHH
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SV--LGLY 146 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~--~~--~~l~ 146 (494)
....|.+.+ +.+.+....++......++..++.++.|+++||+|||++++.+.++.+++.++.+... +. ....
T Consensus 291 ~~~~p~i~~---~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~ 367 (479)
T PRK10077 291 LYYAPEIFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 367 (479)
T ss_pred HHHHHHHHH---HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 344577764 7788877778887888889999999999999999999999999999998887766432 11 1223
Q ss_pred HHHHHHHhHhhhh-hhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhh----------hhhhHHHHHHHHHHHH
Q psy4871 147 VMRTLQGFSMAAI-YVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGS----------ELSYMNYLTYSLIIPI 215 (494)
Q Consensus 147 ~~r~l~G~~~g~~-~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~----------~~~w~~~f~~~~~~~~ 215 (494)
.+-++.+++.+.. .+....++.|.+|+++|+.++++......+|.++++.+.. ..+|++.|++.+++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 447 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHH
Confidence 3444444444432 3667899999999999999999999888888887754432 3578888888887776
Q ss_pred HHHHHh-hccCcch
Q psy4871 216 IFTVTF-MFMPESP 228 (494)
Q Consensus 216 ~~~~~~-~~~~esp 228 (494)
+..+.. ++.||+.
T Consensus 448 ~~~~~~~~~~~e~~ 461 (479)
T PRK10077 448 LAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHhccccCC
Confidence 666555 4567753
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=115.40 Aligned_cols=169 Identities=14% Similarity=0.081 Sum_probs=123.3
Q ss_pred HHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHH
Q psy4871 57 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA 136 (494)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 136 (494)
.+..+.............|.+.+ +++.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 366 (481)
T TIGR00879 290 VLQWFQQFTGINAIMYYSPTIFE---NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVL 366 (481)
T ss_pred HHHHHHHHhCCeehHHHHHHHHH---HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33333333333344455566664 778888888999999999999999999999999999999999988888887776
Q ss_pred HHH-----h------hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----h
Q psy4871 137 MYS-----R------SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----L 201 (494)
Q Consensus 137 ~~a-----~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~ 201 (494)
++. + +...+....++.+.......+....++.|.+|+++|+++.++......+|.++++.+.+. .
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~ 446 (481)
T TIGR00879 367 GILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI 446 (481)
T ss_pred HHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 631 1 222333333333333233446667788999999999999999999999999998887665 4
Q ss_pred hhHHHHHHHHHHHHHHHHHh-hccCcch
Q psy4871 202 SYMNYLTYSLIIPIIFTVTF-MFMPESP 228 (494)
Q Consensus 202 ~w~~~f~~~~~~~~~~~~~~-~~~~esp 228 (494)
+|++.|++.++++++..+.. ++.||++
T Consensus 447 ~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 447 GVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred CccceehhHHHHHHHHHHHHheecccCC
Confidence 79999998888887776655 4566643
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-11 Score=115.44 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=109.1
Q ss_pred hhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHH--HHHHH--hhHHHH
Q psy4871 70 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI--IAMYS--RSVLGL 145 (494)
Q Consensus 70 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~--~~~~a--~~~~~l 145 (494)
....+|.+.++ +++.++.+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+..+ +..+. ++.+.+
T Consensus 238 ~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (394)
T TIGR00883 238 ITTYLPTYLTQ--TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLF 315 (394)
T ss_pred HHHHHHHHHHH--hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34445555423 6788999999999999999999999999999999999988766555444332 22222 466777
Q ss_pred HHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHH-HHHHHHHHHHHHHHhhhh----hh-hHHHHHHHHHHHH
Q psy4871 146 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTL-FQISCHLGILYTYVLGSE----LS-YMNYLTYSLIIPI 215 (494)
Q Consensus 146 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~----~~-w~~~f~~~~~~~~ 215 (494)
++..++.|++.+...+...+++.|.+|+++|+++.++ ...+..+|..++|.+++. .+ |++.++...+..+
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 7888999999989999999999999999999999887 455666777777777665 35 7777666665544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=111.06 Aligned_cols=146 Identities=15% Similarity=0.138 Sum_probs=117.2
Q ss_pred HHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy4871 73 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQ 152 (494)
Q Consensus 73 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~ 152 (494)
.+|.+.+ +.+.++++.+++.+.+.++..+++++.|++.||+|+|+++..+..+.+++.+... + ........++.
T Consensus 222 ~lp~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~ 295 (381)
T PRK03633 222 LMPLYLN---HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL 295 (381)
T ss_pred HHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence 4566664 6688888999999999999999999999999999999999988888777665443 2 23445677888
Q ss_pred HhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhcc
Q psy4871 153 GFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFM 224 (494)
Q Consensus 153 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~ 224 (494)
|++.....|...+++.|..|+++++...+.....+++|.+++|.+++. .+|++.|.+.+.+.++..+..+..
T Consensus 296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 888778889999999999998888888888878888898888888776 479999998888877665554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=114.41 Aligned_cols=151 Identities=11% Similarity=0.025 Sum_probs=107.5
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH--HHhhHHHHHHH
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM--YSRSVLGLYVM 148 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~a~~~~~l~~~ 148 (494)
...+|.+.++ ++|++..+.++..+.+.++..++.+++|+++||+|||+.++....+..++..+.. ..++.+.+.+.
T Consensus 278 ~~~~p~yl~~--~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T PRK09556 278 DNWSPVYAFQ--ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLAS 355 (467)
T ss_pred HHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3445544323 7899999999999999999999999999999999999887765544444332222 33466667788
Q ss_pred HHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHH-HHHHHHHhhhh----------------hhhHHHHHHHH
Q psy4871 149 RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHL-GILYTYVLGSE----------------LSYMNYLTYSL 211 (494)
Q Consensus 149 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~----------------~~w~~~f~~~~ 211 (494)
+++.|++.............|.+|+++||.+.++.+....+ |..++|.+.+. .+|+..|++..
T Consensus 356 ~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~ 435 (467)
T PRK09556 356 LFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALD 435 (467)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHH
Confidence 88888654333333345666999999999999999877775 65555544322 35999998887
Q ss_pred HHHHHHHHHhhc
Q psy4871 212 IIPIIFTVTFMF 223 (494)
Q Consensus 212 ~~~~~~~~~~~~ 223 (494)
+..++..+..++
T Consensus 436 ~~~~~~~~~~~~ 447 (467)
T PRK09556 436 IAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHHHH
Confidence 777766555543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=111.63 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=121.5
Q ss_pred hHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4871 72 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 151 (494)
Q Consensus 72 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l 151 (494)
..+|.+.++ .++++..+.+++.+.+.++..++.++.|+++||+|||+++.....+..+...+....++.+.+.+..++
T Consensus 226 ~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (394)
T PRK03699 226 SWVPEYAQK--KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILG 303 (394)
T ss_pred HHHHHHHHH--HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 344544433 678999999999999999999999999999999999999998888777777776677777777778889
Q ss_pred HHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhccC
Q psy4871 152 QGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMP 225 (494)
Q Consensus 152 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~~ 225 (494)
.|++.+..++...++..|..|. +++...+.......+|..++|.+.+. .||+..+++.+++.++..+....++
T Consensus 304 ~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 304 LGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 9998888888888888887764 46777888888888888888888765 4899998888888777765555544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-10 Score=111.05 Aligned_cols=145 Identities=15% Similarity=0.106 Sum_probs=107.1
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhHhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS----RSVLGLYVMRTLQGFSMAA 158 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a----~~~~~l~~~r~l~G~~~g~ 158 (494)
+++.+......+..+..+...++.++.|+++||+|||++++.+.++..++.+..... ++.+.+++..++.|++.+.
T Consensus 280 ~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (438)
T PRK09952 280 NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDM 359 (438)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 677777766666666677778888999999999999999988877665554433321 2344445566777888888
Q ss_pred hhhhhhhheecccCCCCchhHHHHH-HHHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHhhccCcc
Q psy4871 159 IYVISPMYLGEISETSIRGTIGTLF-QISCHLGILYTYVLGSEL------SYMNYLTYSLIIPIIFTVTFMFMPES 227 (494)
Q Consensus 159 ~~~~~~~~i~e~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~~------~w~~~f~~~~~~~~~~~~~~~~~~es 227 (494)
..+...+++.|.+|++.|+.+.++. ..+..+|..++|.+...+ +|+..+...++..++..+..+.++|+
T Consensus 360 ~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 360 VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8888899999999999998888884 444557777788776653 47888887777777776666666654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-10 Score=109.24 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=109.2
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI-IAMYSRSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~-~~~~a~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
..|.+..+.+++.+...++..++.++.|+++||+|||++.. +..+..++.. +....++.+.+++..++.|++.+...+
T Consensus 235 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~ 313 (390)
T PRK03545 235 VAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGL 313 (390)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchH
Confidence 67889999999999999999999999999999999887544 4444444433 344567788888899999999877777
Q ss_pred hhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh
Q psy4871 162 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF 221 (494)
Q Consensus 162 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~ 221 (494)
.....+.+..| ++|+++++++.....+|..+|+++++. ++++..|++.+++.++..+..
T Consensus 314 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 314 AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 77788888876 578999998888777777777777665 689999999988887766554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-10 Score=111.07 Aligned_cols=154 Identities=13% Similarity=0.073 Sum_probs=125.5
Q ss_pred hHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4871 72 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 151 (494)
Q Consensus 72 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l 151 (494)
..+|.+.++ .+|.++.+.|++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++
T Consensus 244 ~~~p~~~~~--~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 244 VLYPALADE--VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HhhHHHHHh--ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 344555532 388899999999999999999999999999999888888888888888888888888888888889999
Q ss_pred HHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHH-HHhhccCc
Q psy4871 152 QGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFT-VTFMFMPE 226 (494)
Q Consensus 152 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~-~~~~~~~e 226 (494)
.|++.+...+...+++.|..|++.||++.+++.....+|..+++.+.+. ++++..+.+.+...++.. +....++|
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 9999888878888999999999999999999988888888888877766 467777776666555544 44455665
Q ss_pred c
Q psy4871 227 S 227 (494)
Q Consensus 227 s 227 (494)
.
T Consensus 402 ~ 402 (417)
T PRK10489 402 L 402 (417)
T ss_pred c
Confidence 4
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=112.37 Aligned_cols=150 Identities=14% Similarity=0.168 Sum_probs=106.5
Q ss_pred chhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchh--HHHh------hHHHHHHHHHHHHHHh
Q psy4871 69 WSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKW--SLLM------TGPITTASWIIAMYSR 140 (494)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~--~l~~------~~~~~~i~~~~~~~a~ 140 (494)
......|.+.++ +++.++.+.+++.+...++..++.++.|+++||+|||+ .... +.++..+........+
T Consensus 233 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (399)
T TIGR00893 233 FFLTWFPTYLVQ--ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN 310 (399)
T ss_pred HHHHHHHHHHHH--HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch
Confidence 334445544433 67888899999999999999999999999999999996 1111 1111111111111223
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hh-hHHHHHHHHHHHH
Q psy4871 141 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LS-YMNYLTYSLIIPI 215 (494)
Q Consensus 141 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~-w~~~f~~~~~~~~ 215 (494)
+.+..+...++.+.+.+ ..+...+++.|.+|+++|+++.++.+....+|..+++.+.+. .+ |+..|.+.+++.+
T Consensus 311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~ 389 (399)
T TIGR00893 311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALAL 389 (399)
T ss_pred hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHH
Confidence 44444444444455544 778999999999999999999999999999999999988776 36 9999988888777
Q ss_pred HHHHHh
Q psy4871 216 IFTVTF 221 (494)
Q Consensus 216 ~~~~~~ 221 (494)
+..+..
T Consensus 390 ~~~~~~ 395 (399)
T TIGR00893 390 IGALSY 395 (399)
T ss_pred HHHHHH
Confidence 665544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.5e-10 Score=107.81 Aligned_cols=148 Identities=10% Similarity=0.115 Sum_probs=112.9
Q ss_pred hHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHH-hhHHHHHHHHHHHHH-----HhhHHHH
Q psy4871 72 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLL-MTGPITTASWIIAMY-----SRSVLGL 145 (494)
Q Consensus 72 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~~-----a~~~~~l 145 (494)
...|.+.+ +++.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++.+.+
T Consensus 243 ~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 319 (402)
T TIGR00897 243 VFLPMFVA---ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA 319 (402)
T ss_pred HHHHHHHH---HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence 34566664 78899999999999999999999999999999999888764 333444444333332 2356677
Q ss_pred HHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh
Q psy4871 146 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF 221 (494)
Q Consensus 146 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~ 221 (494)
++..++.|++.+...+. ...+.|..| ++|+++.++.+....+|..++|.+++. .||+..+++.+++.++..++.
T Consensus 320 ~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 320 LIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 78888999888776553 455677655 579999999999999999999988766 489999999888887776666
Q ss_pred hcc
Q psy4871 222 MFM 224 (494)
Q Consensus 222 ~~~ 224 (494)
+++
T Consensus 398 ~~~ 400 (402)
T TIGR00897 398 AFI 400 (402)
T ss_pred HHh
Confidence 554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=114.29 Aligned_cols=143 Identities=17% Similarity=0.097 Sum_probs=108.4
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH--hhHHHHHHH
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS--RSVLGLYVM 148 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a--~~~~~l~~~ 148 (494)
...+|.+.++ +++.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++.... .+.+.+.+.
T Consensus 295 ~~~lp~~l~~--~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (496)
T PRK03893 295 QALLPTYLKT--DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL 372 (496)
T ss_pred HHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3455655533 788999999999999999999999999999999999999988877776665544333 344444455
Q ss_pred HHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHH
Q psy4871 149 RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPI 215 (494)
Q Consensus 149 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~ 215 (494)
.++.+.......+..+.++.|.+|+++|++.+++......+|..++|++++. ++|+..+...+....
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~ 443 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLT 443 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 5555544444456677889999999999999999988888888888887765 478877765554433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-10 Score=111.81 Aligned_cols=150 Identities=11% Similarity=0.067 Sum_probs=127.2
Q ss_pred hhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHH
Q psy4871 70 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMR 149 (494)
Q Consensus 70 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r 149 (494)
...++|.+.++ .++.++...|++.+.+.+|..+|+++.+.+.+|+++++.+..+.++++++.+..+++++.+..++.-
T Consensus 237 ~~aLlPl~a~~--~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l 314 (524)
T PF05977_consen 237 VWALLPLFARD--VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIAL 314 (524)
T ss_pred HHHhhhHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34456766544 7888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh
Q psy4871 150 TLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF 221 (494)
Q Consensus 150 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~ 221 (494)
++.|++.........+.+.+..|++.|||.++++.+....+..+|.++.+. +|-+..+.+.++..++..++.
T Consensus 315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999988999999999999999999999887777666666665554 577888877776555544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-10 Score=111.23 Aligned_cols=119 Identities=21% Similarity=0.178 Sum_probs=100.2
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI-IAMYSRSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~-~~~~a~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
+++.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++.++..+ +....++.+.+.+..++.|++.+...+
T Consensus 268 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (405)
T TIGR00891 268 DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWG 347 (405)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchh
Confidence 6789999999999999999999999999999999999999888776544333 333345667777777888887777778
Q ss_pred hhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy4871 162 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 201 (494)
Q Consensus 162 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 201 (494)
....++.|.+|+++|++++++.+....+|..++|.+.+.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l 387 (405)
T TIGR00891 348 ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL 387 (405)
T ss_pred hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999888774
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-09 Score=105.61 Aligned_cols=152 Identities=11% Similarity=0.129 Sum_probs=114.9
Q ss_pred hHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh-hHHHHHHHHH
Q psy4871 72 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR-SVLGLYVMRT 150 (494)
Q Consensus 72 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~-~~~~l~~~r~ 150 (494)
..+|.+.. +.+.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-+
T Consensus 226 ~~lp~~l~---~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~ 300 (393)
T PRK09705 226 AWLPAFYI---EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAM 300 (393)
T ss_pred HHHHHHHH---HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHH
Confidence 34455553 6789999999999999999999999999999999999999988888777766554333 22222 234
Q ss_pred HHHhHhhhhhhhhhhheecccC-CCCchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHh-hc
Q psy4871 151 LQGFSMAAIYVISPMYLGEISE-TSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLIIPIIFTVTF-MF 223 (494)
Q Consensus 151 l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~-~~ 223 (494)
+.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++ +|...|++.++.+++..+.. .+
T Consensus 301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK09705 301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF 380 (393)
T ss_pred HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 6688888888877777677775 56789999999888888888888887763 37777888777776665443 56
Q ss_pred cCcch
Q psy4871 224 MPESP 228 (494)
Q Consensus 224 ~~esp 228 (494)
.||++
T Consensus 381 ~~~~~ 385 (393)
T PRK09705 381 APARF 385 (393)
T ss_pred ccccc
Confidence 67754
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-10 Score=109.24 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=104.4
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH-HHhhHHHHHHHH
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM-YSRSVLGLYVMR 149 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~-~a~~~~~l~~~r 149 (494)
...+|.+.+ +++.++.+.+++.+...++..++.++.|+++||+|||+.+... .+.++...+.. ..++.+.+++..
T Consensus 270 ~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 345 (398)
T TIGR00895 270 TNWLPKLMV---ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLGAVFAVLVGSTLFSPTLLLLLG 345 (398)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHHhhCHHHHHHHH
Confidence 344566664 7888999999999999999999999999999999999554444 44444433333 356777788889
Q ss_pred HHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 150 TLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 150 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
++.|++.+...+...+++.|.+|+++|+++.++......+|..++|.+++.
T Consensus 346 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 346 AIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999999988764
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.4e-10 Score=106.90 Aligned_cols=137 Identities=21% Similarity=0.320 Sum_probs=113.3
Q ss_pred CCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhh
Q psy4871 85 PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISP 164 (494)
Q Consensus 85 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~ 164 (494)
+.+....|.+.++..+...++.++.|++.||+|||+.+.++.++.+++..+..++++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999888878888999999999999999877777777
Q ss_pred hheecccCCCCchhHHHH-HHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh
Q psy4871 165 MYLGEISETSIRGTIGTL-FQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF 221 (494)
Q Consensus 165 ~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~ 221 (494)
.+..+..+++.++...+. .+....+|..+++.++++ +||+..|.+.+++.++..+..
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 788888888877776655 566777787777766655 589999999888877766544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=104.65 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=110.8
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
+.|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+.
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 313 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLA 313 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred hhhheecccCCCCchhHHHHHH-HHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHH
Q psy4871 163 SPMYLGEISETSIRGTIGTLFQ-ISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFT 218 (494)
Q Consensus 163 ~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~ 218 (494)
...++.+. +++++++..++.. ....+|..+++.+++. +++ ..++..+++.++.+
T Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 314 AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 99998887 5566788888775 5556676777777666 355 45555555555443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=106.07 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=127.4
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCch--hHHHhhHHHHHHHHHHHHH--------HhhHHHHHHHHHHH
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK--WSLLMTGPITTASWIIAMY--------SRSVLGLYVMRTLQ 152 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~i~~~~~~~--------a~~~~~l~~~r~l~ 152 (494)
+++++..+...+.-+..+..++|++++|++.||+|.| ++++++++++.+..+...+ .++.+.+.+.-++.
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~ 390 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLI 390 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999 8999998888776666555 57888999999999
Q ss_pred HhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHhhccCc
Q psy4871 153 GFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLIIPIIFTVTFMFMPE 226 (494)
Q Consensus 153 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~e 226 (494)
|+..|..++.+.++.+|+.|+++.+..+|++....-....+||++.+.+ +-|+.+....++.++.+++.+.++.
T Consensus 391 G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 391 GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999987764 4778888777777777777776654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=109.76 Aligned_cols=136 Identities=13% Similarity=0.188 Sum_probs=111.6
Q ss_pred HHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHhHhhhhhhhhhhheecc
Q psy4871 93 WVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSV--LGLYVMRTLQGFSMAAIYVISPMYLGEI 170 (494)
Q Consensus 93 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~e~ 170 (494)
+...+..+...++.++.+++.||+|||+++.++.++.+++.++..+.++. +..++.-++.+++.+..++....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445566777888999999999999999999999999988888776644 4555666777777788888899999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHhhccCcch
Q psy4871 171 SETSIRGTIGTLFQISCHLGILYTYVLGSE--LSYMNYLTYSLIIPIIFTVTFMFMPESP 228 (494)
Q Consensus 171 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--~~w~~~f~~~~~~~~~~~~~~~~~~esp 228 (494)
+|++.|+.++++.+....+|.+++|.+... .++...+.+.++..++..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999988773 2456777887877777777778889864
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-10 Score=106.61 Aligned_cols=127 Identities=14% Similarity=0.107 Sum_probs=112.3
Q ss_pred hHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhh-HHHHHHHHH
Q psy4871 72 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRS-VLGLYVMRT 150 (494)
Q Consensus 72 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~-~~~l~~~r~ 150 (494)
...|.+.++ .++.++.+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++..+..+.++ .+.+++..+
T Consensus 232 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (365)
T TIGR00900 232 ALFPYVQSK--YLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF 309 (365)
T ss_pred HHhHHHHHH--HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 344555532 37889999999999999999999999999999999999999988888888888877774 888899999
Q ss_pred HHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 151 LQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 151 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
+.|++.+...+...+++.|.+|+++|+++.++......+|..+++.+++.
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~ 359 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGP 359 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988765
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=104.80 Aligned_cols=151 Identities=11% Similarity=0.093 Sum_probs=100.3
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhh--CchhHH-HhhHHHHHHHHHHHHH--HhhHHHH
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI--GRKWSL-LMTGPITTASWIIAMY--SRSVLGL 145 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l-~~~~~~~~i~~~~~~~--a~~~~~l 145 (494)
...+|.+.++ +.|.+..+.+++.+.+.++..++.++.|+++||+ |||+.. +....+..++.++..+ ..+.+..
T Consensus 273 ~~~~P~~l~~--~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 350 (452)
T PRK11273 273 LDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVD 350 (452)
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHH
Confidence 3445555533 5688888999999999999999999999999999 555432 2222333333332222 2344444
Q ss_pred HHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHH-HHHHhhhh----hhhHHHHHHHHHHHHHHHHH
Q psy4871 146 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGIL-YTYVLGSE----LSYMNYLTYSLIIPIIFTVT 220 (494)
Q Consensus 146 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~~----~~w~~~f~~~~~~~~~~~~~ 220 (494)
.++.++.|.+..........+..|.+|+++||++.++.+....+|.. .+|.+.+. .||+..|++.++.+++..+.
T Consensus 351 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~ 430 (452)
T PRK11273 351 MACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 430 (452)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 55555666543333333345667999999999999999877767654 45665544 58999999888877777655
Q ss_pred hhc
Q psy4871 221 FMF 223 (494)
Q Consensus 221 ~~~ 223 (494)
...
T Consensus 431 ~~~ 433 (452)
T PRK11273 431 LIV 433 (452)
T ss_pred HHH
Confidence 543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-09 Score=93.21 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
||..++...+.....|..+. .+..-|++++ .+|+|.+|...+.+...+|..+ .++.|.+.|++|++.++++|.+.
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~-Fs~yS~~Lk~---~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~ 75 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYT-FSAYSPQLKS---RLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVL 75 (250)
T ss_pred ChhhHHHHHHHHHhcCcccc-hhhhhHHHHH---HhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHH
Confidence 46666666666666664433 3345577785 8999999999999999999987 58899999999999999999999
Q ss_pred HHHHHHHHHHH-------hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy4871 129 TTASWIIAMYS-------RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 201 (494)
Q Consensus 129 ~~i~~~~~~~a-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 201 (494)
..+|..+..++ .++|.+.+..++.|.+.+....++.....+.+|. +||.+.++.-...+++..+-..+...+
T Consensus 76 ~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 76 GFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred HHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHH
Confidence 99999887664 3678888888888888777767776766788875 799999999999999887766555442
Q ss_pred ----hhHHHHHHHHHHHHHHHHHhhccCc
Q psy4871 202 ----SYMNYLTYSLIIPIIFTVTFMFMPE 226 (494)
Q Consensus 202 ----~w~~~f~~~~~~~~~~~~~~~~~~e 226 (494)
.-...+.+...+.++.++..++++.
T Consensus 155 f~~~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 155 FGDDPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHhhheec
Confidence 2334444444445555555555543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=106.71 Aligned_cols=128 Identities=13% Similarity=0.059 Sum_probs=105.0
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH---hhHHHHHH
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS---RSVLGLYV 147 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a---~~~~~l~~ 147 (494)
....|.+.+. .+|.++.+.+++...+.++..++.++.|++.||+|||+++..+.++.+++.++..+. ++.+.+.+
T Consensus 281 ~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (471)
T PRK10504 281 PFMTPVFLQI--GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPF 358 (471)
T ss_pred HHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 3445554432 468888899999999999999999999999999999999999998888887766653 33444556
Q ss_pred HHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 148 MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 148 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
.-++.|++.+...+....++.+..|+++++.+.++.+....+|..+|+.+++.
T Consensus 359 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 411 (471)
T PRK10504 359 VLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGL 411 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899888888889999999999999999999999999998888887765
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=105.20 Aligned_cols=144 Identities=10% Similarity=0.098 Sum_probs=110.4
Q ss_pred CCCCCCCchhHHHH-HHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHH---HHH-hhHHHHHHHHHHHHhHhh
Q psy4871 83 PIPMSPNEGSWVVA-IIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA---MYS-RSVLGLYVMRTLQGFSMA 157 (494)
Q Consensus 83 ~~~~s~~~~g~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~a-~~~~~l~~~r~l~G~~~g 157 (494)
++|.++.+.+++.. ...++.+++.++.|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-++..++.|
T Consensus 252 ~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g 331 (491)
T PRK11010 252 GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGG 331 (491)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 67899999999974 6678999999999999999999988877766655554332 232 355555556666666666
Q ss_pred hhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhccCc
Q psy4871 158 AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMPE 226 (494)
Q Consensus 158 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~~e 226 (494)
...+...++..+..+++.++...++.+...++|..+++.+.+. +||+..|.+.++++++..+...++++
T Consensus 332 ~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 332 MGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666677888889999889999999988888888766655554 58999999999988887776666554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=106.53 Aligned_cols=133 Identities=20% Similarity=0.058 Sum_probs=92.5
Q ss_pred HHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhh----HHHHHHHHHHHHhHhhhhhhhhhhheeccc
Q psy4871 96 AIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRS----VLGLYVMRTLQGFSMAAIYVISPMYLGEIS 171 (494)
Q Consensus 96 s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~----~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 171 (494)
.+..++..++.++.++++||+|||++++++.++.+++.++.++..+ ...+...-+...++..+..+....+..|.+
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 3445566778889999999999999999988888877766654321 111111111112222233456677789999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhhh--------------hhHHHHHHHHHHHHHHHHHhhccCcch
Q psy4871 172 ETSIRGTIGTLFQISCHLGILYTYVLGSEL--------------SYMNYLTYSLIIPIIFTVTFMFMPESP 228 (494)
Q Consensus 172 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~--------------~w~~~f~~~~~~~~~~~~~~~~~~esp 228 (494)
|.+.|+++.++.+....+|.++++.+.+.+ ++...|++.++++++..+..+++||+.
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence 999999999999999999999888776542 234567777777776666667789874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-09 Score=102.29 Aligned_cols=145 Identities=9% Similarity=-0.035 Sum_probs=111.3
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhHhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS-RSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a-~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
+.+.+....+++.+.+.+.....+++.|.+.||+++|+.+..+..+..++.++..++ ++.+.+++..++.|+|.+...|
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p 317 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP 317 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence 556677778888888888888888999999999999999999998888888777764 5777778889999999988888
Q ss_pred hhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh-hccCcch
Q psy4871 162 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF-MFMPESP 228 (494)
Q Consensus 162 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~-~~~~esp 228 (494)
....++.+..|++.|+.+.+..+ ...+|..+||.+++. .+....|++.+....+..++. ...+|.|
T Consensus 318 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 318 GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 88899999999999999988655 444677777777665 456666666555544444333 3344433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8e-09 Score=96.05 Aligned_cols=152 Identities=18% Similarity=0.176 Sum_probs=121.0
Q ss_pred ccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH-hhHHHH
Q psy4871 67 FAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS-RSVLGL 145 (494)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a-~~~~~l 145 (494)
+..++.+-|.+++ ..|++.+.++++.-.|.++..+|.++.|+++|| +.|+.+.....+.++..+...+. ++.+..
T Consensus 228 F~~ftYi~P~L~~---v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~ 303 (394)
T COG2814 228 FALYTYIRPFLES---VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALA 303 (394)
T ss_pred hhhHHhHHHHHHH---ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3444455566663 678999999999999999999999999999999 99999998878777777766554 556666
Q ss_pred HHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh
Q psy4871 146 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF 221 (494)
Q Consensus 146 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~ 221 (494)
++.-++.|++.+.........+.+ .-++.+..+.+++...+++|..+|..+++. +|+....++.+++.++..+..
T Consensus 304 ~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~ 382 (394)
T COG2814 304 LALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA 382 (394)
T ss_pred HHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 777777888877777777777777 335669999999988888888888887766 588999999998888877665
Q ss_pred hc
Q psy4871 222 MF 223 (494)
Q Consensus 222 ~~ 223 (494)
+.
T Consensus 383 ~~ 384 (394)
T COG2814 383 LL 384 (394)
T ss_pred HH
Confidence 44
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=103.23 Aligned_cols=126 Identities=16% Similarity=0.089 Sum_probs=93.4
Q ss_pred HHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy4871 73 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQ 152 (494)
Q Consensus 73 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~ 152 (494)
.+|.+.+ +.+.++.+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++.+++.++....++.....+.-++.
T Consensus 253 ~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (426)
T PRK12307 253 LLPTYLA---GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF 329 (426)
T ss_pred HHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 4555553 6688888999999999999999999999999999999999988877776655544433222222222333
Q ss_pred Hh--HhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy4871 153 GF--SMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 201 (494)
Q Consensus 153 G~--~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 201 (494)
|+ +..+..+..+.++.|.+|+++|+++.++......+|..++|.+.+++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 33 22233345567889999999999999999888888998998887664
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-09 Score=100.73 Aligned_cols=138 Identities=10% Similarity=0.010 Sum_probs=104.7
Q ss_pred CCCCCCCchhHHHHHHH-HhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH------hhHHHHHHHHHHHHhH
Q psy4871 83 PIPMSPNEGSWVVAIIE-IGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS------RSVLGLYVMRTLQGFS 155 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a------~~~~~l~~~r~l~G~~ 155 (494)
|.|++++++|++..... .+..++.++.|++.||+|+|+.+..+.++.++..+..... ++...+.....+.+++
T Consensus 237 ~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (390)
T TIGR02718 237 DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLI 316 (390)
T ss_pred hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHH
Confidence 77999999999988876 4667788999999999999999988777664433332211 2333445555666777
Q ss_pred hhhhhhhhhhheecccCC-CCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHH
Q psy4871 156 MAAIYVISPMYLGEISET-SIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVT 220 (494)
Q Consensus 156 ~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~ 220 (494)
.+...+...+++.+..++ +++++..++.+....+|..++|.+++. .||+..|.+.+++.++..+.
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 777777777777777776 788999999999999999999988876 47888888887776665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=99.14 Aligned_cols=174 Identities=14% Similarity=0.117 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
+-...++.+-..+.+|.+.-...... .-. + ++|++..+..++.-...+..++|++++|+|.||+|.|+++..++++
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~-fg~-~--~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi 327 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGV-FGA-A--DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVI 327 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHH-HHH-H--HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHH
Confidence 34555566666677777554332222 112 3 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-----hh
Q psy4871 129 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SY 203 (494)
Q Consensus 129 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w 203 (494)
..+.++...+...-..+.+.-.+.|...|..+..+.+|..+..|+++-++.+|+++...-.+..+||++.+.+ +-
T Consensus 328 ~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~ 407 (438)
T COG2270 328 LSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS 407 (438)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence 9999988888777777888889999999999999999999999999999999999999999999999887663 45
Q ss_pred HHHHHHHHHHHHHHHHHhhccCc
Q psy4871 204 MNYLTYSLIIPIIFTVTFMFMPE 226 (494)
Q Consensus 204 ~~~f~~~~~~~~~~~~~~~~~~e 226 (494)
|..+....++.++..+..+.+|+
T Consensus 408 r~g~~~i~vll~iGl~~L~~v~~ 430 (438)
T COG2270 408 RAGVLSIIVLLLIGLLLLLRVKV 430 (438)
T ss_pred hhHHHHHHHHHHhhHhhEEeecC
Confidence 66666666666666666666664
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-09 Score=105.34 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=106.0
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCch-------hHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK-------WSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFS 155 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr-------~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~ 155 (494)
++|++..+.+.+.+++.++..++.++.|+++||+||| ..+.+..++.+++.++....++.+..++.-++.+++
T Consensus 282 ~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~ 361 (476)
T PLN00028 282 RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIF 361 (476)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999875 233333333444444445555666666666677777
Q ss_pred hhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHhhccC
Q psy4871 156 MAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE---LSYMNYLTYSLIIPIIFTVTFMFMP 225 (494)
Q Consensus 156 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~---~~w~~~f~~~~~~~~~~~~~~~~~~ 225 (494)
.+...+...+++.+..| ++||...++...+..+|..+++.+... .+|+..|++.+++.++..+..++++
T Consensus 362 ~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 362 VQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 66666666677777654 679999999988888888888877542 3699999998888877776666554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.2e-09 Score=101.13 Aligned_cols=143 Identities=14% Similarity=0.083 Sum_probs=91.3
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH--H--HhhHHHHHHHHHHHHhHhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM--Y--SRSVLGLYVMRTLQGFSMAA 158 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~--a~~~~~l~~~r~l~G~~~g~ 158 (494)
.++.+..+.++..++..++..+++++.|+++||+|||++++++.++.++..+... . .++....+..-.+.+++.+.
T Consensus 273 ~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (432)
T PRK10406 273 TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSF 352 (432)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 6788888889999988888899999999999999999988777665444333221 1 12223222222223333344
Q ss_pred hhhhhhhheecccCCCCchhHHHHHHHHHHH-HHHHHHHhhhhh---h-hHHHHHHHHHHHHHHHHHhhccC
Q psy4871 159 IYVISPMYLGEISETSIRGTIGTLFQISCHL-GILYTYVLGSEL---S-YMNYLTYSLIIPIIFTVTFMFMP 225 (494)
Q Consensus 159 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~~---~-w~~~f~~~~~~~~~~~~~~~~~~ 225 (494)
..+....++.|++|++.|+.+.++.+....+ +....|.+...+ + |...++..++..++..+..++++
T Consensus 353 ~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~ 424 (432)
T PRK10406 353 YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 4455677889999999999999997654433 223355544443 3 55555555555555555545443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-09 Score=116.99 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=114.5
Q ss_pred CCCCCCC-chhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4871 83 PIPMSPN-EGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 83 ~~~~s~~-~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
.++.+.. +.+++.+...++.++++++.|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.+...+
T Consensus 262 ~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 341 (1146)
T PRK08633 262 VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIV 341 (1146)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence 6788888 999999999999999999999999999999999999998888888888888989899999999999999989
Q ss_pred hhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHH
Q psy4871 162 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLIIPI 215 (494)
Q Consensus 162 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~ 215 (494)
...+++.+..|+++||+++++.+....+|.++++.++..+ ++...|++.+.+.+
T Consensus 342 ~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 342 PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999999988888887776666543 34455555544443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.7e-09 Score=101.33 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=96.8
Q ss_pred CCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhHhhhhhhhhhh
Q psy4871 87 SPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS-RSVLGLYVMRTLQGFSMAAIYVISPM 165 (494)
Q Consensus 87 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a-~~~~~l~~~r~l~G~~~g~~~~~~~~ 165 (494)
++.+.+++.++..++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999999999998888887777665 46677778888999999999999999
Q ss_pred heecccC-------CCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 166 YLGEISE-------TSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 166 ~i~e~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
+++|..+ ++++|.+.++.+....+|..+++.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ 376 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGL 376 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988865 4567999999999888888888877655
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=97.12 Aligned_cols=178 Identities=16% Similarity=0.118 Sum_probs=123.3
Q ss_pred cchhhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHh
Q psy4871 45 TYTGRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLM 124 (494)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~ 124 (494)
..|+...+.+.+.++.-+.|.+. +......+.. +-|++..+..++.....+...+..+.+..+.||+|||+.++.
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~a--i~~Yst~i~~---~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~ 340 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINA--IFFYSTSIFK---TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLI 340 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcce--eHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34444445555555555555443 2333334443 678999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHh---hHH------HHHHHHHHHHhHhhh-hhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHH
Q psy4871 125 TGPITTASWIIAMYSR---SVL------GLYVMRTLQGFSMAA-IYVISPMYLGEISETSIRGTIGTLFQISCHLGILYT 194 (494)
Q Consensus 125 ~~~~~~i~~~~~~~a~---~~~------~l~~~r~l~G~~~g~-~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~ 194 (494)
+..+..+..++...+. +.. ..+++.++..++.+. .-|...-+.+|.+|++.|..+.++......++.++-
T Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv 420 (485)
T KOG0569|consen 341 SLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIV 420 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHH
Confidence 9999888888766532 111 123344443333322 247888999999999999999999888777776654
Q ss_pred HHhhh----hhhhHHHHHHHHHHHHHHHHHh-hccCcch
Q psy4871 195 YVLGS----ELSYMNYLTYSLIIPIIFTVTF-MFMPESP 228 (494)
Q Consensus 195 ~~~~~----~~~w~~~f~~~~~~~~~~~~~~-~~~~esp 228 (494)
...-. .+|- +.|.+..+++++..+.. ..+|||.
T Consensus 421 ~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 421 GFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 44333 3444 66777777776666544 7889984
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-09 Score=101.53 Aligned_cols=133 Identities=20% Similarity=0.202 Sum_probs=105.3
Q ss_pred hHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4871 302 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 380 (494)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (494)
......+.|.+.++.|.+. +.+.......++..++.++.|++.||+|||+.+..+.++.+++.+++...
T Consensus 39 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 108 (434)
T PRK11663 39 RKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS---------- 108 (434)
T ss_pred hhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH----------
Confidence 3455677888888888774 56777788889999999999999999999999999998888887766653
Q ss_pred CCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 381 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
++.+...+..++.+++.+... +....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+
T Consensus 109 --~~~~~l~~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 109 --SSLWAFALLWVLNAFFQGWGW-PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred --hHHHHHHHHHHHHHHHHHccc-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344444445555555444 4445888999999999999999999999999999999998877
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.3e-09 Score=101.18 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=89.9
Q ss_pred hhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHH-HH-H--HhhHHHH
Q psy4871 70 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWII-AM-Y--SRSVLGL 145 (494)
Q Consensus 70 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~-~~-~--a~~~~~l 145 (494)
.....|.+.++ .+|++..+.++....+.++..++.++.|+++||+|||++++.+.++..+..+. .. . .+++..+
T Consensus 257 ~~~~~p~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (434)
T PRK15075 257 ITVYTPTFGKT--VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARM 334 (434)
T ss_pred HHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 34445655432 47888889999999999999999999999999999999888765554332221 11 1 2344444
Q ss_pred HHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHH-HHHHHHHHHHHHHhhhh
Q psy4871 146 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLF-QISCHLGILYTYVLGSE 200 (494)
Q Consensus 146 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~ 200 (494)
.+..++.|++.+...+....++.|.+|+++|+...++. +.+..++..++|.+.+.
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~ 390 (434)
T PRK15075 335 LAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW 390 (434)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence 45566667777776676778899999999999999885 33444445556665543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=102.88 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=90.1
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCc-hhHHH-hhHHH-HHHHHHHHHH--HhhHHHHHHHHHHHHhHhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGR-KWSLL-MTGPI-TTASWIIAMY--SRSVLGLYVMRTLQGFSMA 157 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~-~~~~~-~~i~~~~~~~--a~~~~~l~~~r~l~G~~~g 157 (494)
.++.++.+.+++.+.+.++..++.++.|+++||.++ |+..+ ..... ..++...... ..+.+.+++..++.|+...
T Consensus 246 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 325 (379)
T TIGR00881 246 EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVY 325 (379)
T ss_pred HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999998643 33222 22111 1122222222 2355566677777887666
Q ss_pred hhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHH
Q psy4871 158 AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNY 206 (494)
Q Consensus 158 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~ 206 (494)
...+....++.|.+|+++|+++.++.+....+|..+++.+.+. .||++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 326 GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 6666667888999999999999999999999999888877665 466654
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=91.89 Aligned_cols=129 Identities=14% Similarity=0.175 Sum_probs=103.4
Q ss_pred HHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCch
Q psy4871 98 IEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRG 177 (494)
Q Consensus 98 ~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~ 177 (494)
..+.-.-|.++.+.+.||+|||+++..+.++++++.++...+.+.....+.-+..-++..+.+.+.+.|..|.+|..-|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34566788899999999999999999999999999998887765444444444444455667788899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHhhccCc
Q psy4871 178 TIGTLFQISCHLGILYTYVLGSEL--SYMNYLTYSLIIPIIFTVTFMFMPE 226 (494)
Q Consensus 178 ~~~~~~~~~~~~G~~~~~~~~~~~--~w~~~f~~~~~~~~~~~~~~~~~~e 226 (494)
...|.-+...-+|.++.|+++-.. +-..+..+.+.++++..+...++|-
T Consensus 470 tgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeee
Confidence 999999999999999999998332 3345667777777888888888874
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=6e-09 Score=102.29 Aligned_cols=167 Identities=16% Similarity=0.276 Sum_probs=144.7
Q ss_pred HHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhC--chhHHHhhHHHHHHHH
Q psy4871 56 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG--RKWSLLMTGPITTASW 133 (494)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~i~~ 133 (494)
.+++..+...........+|.+.. +.+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.
T Consensus 303 ~~~~~~~~~~g~~~p~~~l~~~~~---~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 303 LALSNLFAYLGFNVPFVYLPSYAK---SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 333334444444455566788885 88999999999999999999999999999999988 5667778888888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHH
Q psy4871 134 IIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLT 208 (494)
Q Consensus 134 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~ 208 (494)
+.++++++++.++..-.+.|++.|.........+.|+.+.++-..+.|+.....+++.++||.+.+.+ +|...|+
T Consensus 380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~ 459 (509)
T KOG2504|consen 380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFY 459 (509)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehh
Confidence 89999999999999999999999999888888999999999999999999999999999999998874 5899999
Q ss_pred HHHHHHHHHHHHhhccC
Q psy4871 209 YSLIIPIIFTVTFMFMP 225 (494)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ 225 (494)
.+++..++....+++.|
T Consensus 460 ~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 460 FCGLCFLLSAVLLLILR 476 (509)
T ss_pred hcChHHHHHHHHHHHhH
Confidence 99999988887777766
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=98.65 Aligned_cols=148 Identities=15% Similarity=0.041 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHH
Q psy4871 286 AFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFS 364 (494)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 364 (494)
+......+.++.............|.+.++.+.+. +.+.......++..++.+..|++.||+|||+++..+.++..++.
T Consensus 8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 87 (412)
T TIGR02332 8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS 87 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 34444444444444444555556676667777664 56677788888889999999999999999999999988888888
Q ss_pred HHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhc
Q psy4871 365 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 444 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~ 444 (494)
++..+. ++.+..++.-++.+++.+. ..|....++.|.+|++.|+++.++.+....+|..+++.+.+.
T Consensus 88 ~~~~~~------------~~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 154 (412)
T TIGR02332 88 TATMFA------------TGPESLYLLRILVGIAEAG-FLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGY 154 (412)
T ss_pred HHHHHh------------cCHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777653 2444455555566666554 335555778999999999999999999999999999998887
Q ss_pred hh
Q psy4871 445 MD 446 (494)
Q Consensus 445 l~ 446 (494)
+.
T Consensus 155 l~ 156 (412)
T TIGR02332 155 IL 156 (412)
T ss_pred HH
Confidence 65
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=98.31 Aligned_cols=135 Identities=10% Similarity=0.104 Sum_probs=98.6
Q ss_pred chHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhccc-CchhHHHHhhHHHHHHHHHHHHHHHhhhcc
Q psy4871 301 GVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCSLFSFIAGLYYYVTIEL 377 (494)
Q Consensus 301 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (494)
.++.+..++|.++.+ .|++. +++...........++.+++|+++||+ |||+.+..+.++..++.+++...
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~------- 96 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS------- 96 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh-------
Confidence 366777888888765 46654 555666677777788999999999999 99999999999888887655431
Q ss_pred ccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcc--hhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 378 QYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSN--MKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
........+...+...+.+. ..+...+++.|.+|++ .|+++.++.++..++|+.++|.+.+++.+
T Consensus 97 ----~~~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~ 163 (493)
T PRK15462 97 ----EIHPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE 163 (493)
T ss_pred ----hcchhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence 01112222222333333332 3344458899999986 69999999999999999999999999986
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-07 Score=88.14 Aligned_cols=103 Identities=21% Similarity=0.184 Sum_probs=91.7
Q ss_pred HHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCC
Q psy4871 95 VAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETS 174 (494)
Q Consensus 95 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~ 174 (494)
.++-+....+++++.+.+.|+.|.|+.+.++...+....+...+ +|-+.++++-.+.|+|.+..+...-.|++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77788888999999999999999999999999999988877755 56778899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhh
Q psy4871 175 IRGTIGTLFQISCHLGILYTYVLG 198 (494)
Q Consensus 175 ~r~~~~~~~~~~~~~G~~~~~~~~ 198 (494)
.+.+..++.......+.++|+.+-
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999999998888888888876654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=97.64 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=102.4
Q ss_pred CCCCCCCchhHHHHHH-HHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHH---HHH-hhHHHHHHHH----HHHH
Q psy4871 83 PIPMSPNEGSWVVAII-EIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA---MYS-RSVLGLYVMR----TLQG 153 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~-~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~a-~~~~~l~~~r----~l~G 153 (494)
++|+++.+.+++.+.. .++..++.++.|++.||+|+|+.+..+..+..+..+.. ++. ++.+.+++.- +..|
T Consensus 239 ~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (402)
T PRK11902 239 GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGG 318 (402)
T ss_pred hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 6889999999998665 45689999999999999999998887777666654433 343 3555555444 4566
Q ss_pred hHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q psy4871 154 FSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFM 224 (494)
Q Consensus 154 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 224 (494)
++.+...+....++.+.+|.++++...++...+..++..++..+...+||+..|.+.++++++..+..+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 319 MGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888899999887776654444444444444455555566899999999998888776665444
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-09 Score=97.31 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHH
Q psy4871 283 NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCS 361 (494)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 361 (494)
.+++.++..++.....+..--.+..-.|.+.++.+++. +.+.+.+.+.+..-++-++.|.++||.+.|+.+..++++++
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa 105 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence 44445555555444433334455556677777777764 77888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy4871 362 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 441 (494)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i 441 (494)
+..+++++. ++.+...++..+.+.+.+.++.|.. ..+..-+|+++||+..++-|+..++|+.+.|++
T Consensus 106 i~nil~Gfs------------~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~ 172 (448)
T COG2271 106 IVNILFGFS------------PSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLV 172 (448)
T ss_pred HHHHHHhhh------------hHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence 999999885 3455677788888889999888777 778889999999999999999999999999999
Q ss_pred h--hchhh
Q psy4871 442 F--FLMDK 447 (494)
Q Consensus 442 ~--~~l~~ 447 (494)
. +.+.+
T Consensus 173 ~~la~~~~ 180 (448)
T COG2271 173 ALLAFFAF 180 (448)
T ss_pred HHHHHHHh
Confidence 9 77664
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.4e-08 Score=91.70 Aligned_cols=128 Identities=8% Similarity=-0.007 Sum_probs=99.4
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
.+++++.+.++..+.+..+..++.+..+++.||+|+|+++.++..+..++.++....++... ..+-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998888888877766655554332 34566889999999999
Q ss_pred hhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHH
Q psy4871 163 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLII 213 (494)
Q Consensus 163 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~ 213 (494)
..+...+..|++ .+.+.++. ....+|.++.|.+.+. .+.+..|++..+.
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 999998888764 45666665 4556788888875554 3666666644433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.5e-09 Score=98.76 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=95.6
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHH-HhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH----------
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIE-IGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS---------- 139 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a---------- 139 (494)
...+|.+.. ++|.++.+.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+.
T Consensus 229 ~~~~~~~l~---~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (356)
T TIGR00901 229 TVLTTLFLL---DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGIT 305 (356)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 344555553 67889999998887765 6788999999999999999999998888888877665543
Q ss_pred -hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHH
Q psy4871 140 -RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCH 188 (494)
Q Consensus 140 -~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 188 (494)
++.+.+..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 306 FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 4567788889999999999999999999999999999999999877654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.1e-09 Score=101.02 Aligned_cols=153 Identities=11% Similarity=0.070 Sum_probs=96.4
Q ss_pred HHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHH---HHHHHHHHH--hhHHHHHH
Q psy4871 73 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITT---ASWIIAMYS--RSVLGLYV 147 (494)
Q Consensus 73 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---i~~~~~~~a--~~~~~l~~ 147 (494)
.+|.+.++ ..+.++.+.++..+.+.++..++.++.|+++||+|+++....+..+.. ++.+..... .+.+...+
T Consensus 273 ~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (438)
T TIGR00712 273 WSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMI 350 (438)
T ss_pred hHHHHHHH--ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 44555432 468899999999999999999999999999999975432223322221 111111121 23343344
Q ss_pred HHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHH-HHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh-
Q psy4871 148 MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLG-ILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF- 221 (494)
Q Consensus 148 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G-~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~- 221 (494)
..++.|++.............|.+|+++|+.+.++.+....+| .+++|.+.+. .||...|++.....++..+..
T Consensus 351 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 430 (438)
T TIGR00712 351 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 430 (438)
T ss_pred HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 4455555432222222345679999999999999987766655 4566666544 478888888777666555444
Q ss_pred hccCcc
Q psy4871 222 MFMPES 227 (494)
Q Consensus 222 ~~~~es 227 (494)
+.+||.
T Consensus 431 ~~~~~~ 436 (438)
T TIGR00712 431 VVMIGE 436 (438)
T ss_pred HHHhhc
Confidence 555653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-08 Score=93.40 Aligned_cols=140 Identities=9% Similarity=0.106 Sum_probs=105.8
Q ss_pred HHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH-HHHHHHHHHHHhhHHHHHHHHHHH
Q psy4871 74 LEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI-TTASWIIAMYSRSVLGLYVMRTLQ 152 (494)
Q Consensus 74 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~i~~~~~~~a~~~~~l~~~r~l~ 152 (494)
.|.+.+ ++|.++.+.+++.+.+.++..++.++.|++.||.+ |+.++.+..+ .....++..+.++.+.+.+..++.
T Consensus 240 ~p~~~~---~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 315 (394)
T PRK10213 240 RPVYMN---LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIW 315 (394)
T ss_pred HHHHHH---hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 355663 77899999999999999999999999999999965 4444444444 444444545667788888899999
Q ss_pred HhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHH
Q psy4871 153 GFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFT 218 (494)
Q Consensus 153 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~ 218 (494)
|++.+...+...+++.+..| +++++..++......+|..+|+.+++. .|++..+...+++.++..
T Consensus 316 G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 316 GLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 99999998888888988887 446677777777777777777777766 477777777776655444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-08 Score=96.83 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=94.4
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhHhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SVLGLYVMRTLQGFSMAAIY 160 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~ 160 (494)
.++.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..++.|+|.+...
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~ 337 (448)
T PRK09848 258 VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTM 337 (448)
T ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 4565554444545555677888999999999999999999999999888887776643 67777788889999999999
Q ss_pred hhhhhheecccCCC-------CchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 161 VISPMYLGEISETS-------IRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 161 ~~~~~~i~e~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
+...++..|..+.+ ++|...++++....+|..+++.+.+.
T Consensus 338 ~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 338 TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888753 35888999998888888888776644
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-08 Score=112.13 Aligned_cols=141 Identities=9% Similarity=-0.032 Sum_probs=113.1
Q ss_pred HHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH-------------
Q psy4871 73 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS------------- 139 (494)
Q Consensus 73 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a------------- 139 (494)
.+|.+..+ .++.++.+.|++.+.+.+|.++++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 247 ~~p~~~~~--~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 324 (1140)
T PRK06814 247 QLPLLAKE--TLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKS 324 (1140)
T ss_pred HhHHHHHH--HcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccc
Confidence 34444433 578899999999999999999999999999999888777777776666666555443
Q ss_pred -------hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHH
Q psy4871 140 -------RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYL 207 (494)
Q Consensus 140 -------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f 207 (494)
++.+.++++.++.|++.+...+...+++.+.+|+++||+++++.+....+|..+++++.+.+ ++...+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~ 404 (1140)
T PRK06814 325 ILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWII 404 (1140)
T ss_pred hhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 67788888999999999999999999999999999999999999999999888888876653 455555
Q ss_pred HHHHHHHH
Q psy4871 208 TYSLIIPI 215 (494)
Q Consensus 208 ~~~~~~~~ 215 (494)
++.+++.+
T Consensus 405 ~~~~~~~~ 412 (1140)
T PRK06814 405 LFIALANL 412 (1140)
T ss_pred HHHHHHHH
Confidence 55444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-08 Score=94.72 Aligned_cols=134 Identities=13% Similarity=-0.009 Sum_probs=104.5
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHhHhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR-----SVLGLYVMRTLQGFSMA 157 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~-----~~~~l~~~r~l~G~~~g 157 (494)
+++.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+.+ +.+.+++.-++.|++.+
T Consensus 245 ~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~ 324 (406)
T PRK15402 245 GEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIG 324 (406)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH
Confidence 6788888999988888889999999999999999999999999888877777766543 56667888899999988
Q ss_pred hhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHH
Q psy4871 158 AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL----SYMNYLTYSLIIPIIF 217 (494)
Q Consensus 158 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~ 217 (494)
...+........ .++++||+..+..+....+|..+|+.+++.+ +|.......++..++.
T Consensus 325 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 325 LANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 877766555543 3457899999999999999998988888763 4444444444444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-08 Score=96.36 Aligned_cols=134 Identities=12% Similarity=-0.013 Sum_probs=102.9
Q ss_pred hHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4871 302 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 380 (494)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (494)
........|.+.++.+.+. +.+.......++..++.++.|++.||+|||+.+..+..+.+++.+.+...
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------- 90 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS---------- 90 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3444445677777777764 66777888889999999999999999999999999888888877766553
Q ss_pred CCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 381 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
++.+...+..++.+.+.+.. .+...+++.|.+|++.|+++.++.+....++..+++.+.+.+.+.
T Consensus 91 --~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 155 (385)
T TIGR00710 91 --NNIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW 155 (385)
T ss_pred --ccHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444455555554433 344558899999999999999999999999999999999988763
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.9e-07 Score=90.90 Aligned_cols=149 Identities=14% Similarity=0.183 Sum_probs=118.4
Q ss_pred hhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh-hCchhHHHhhHHHHHHHHHHHHHHhh-------
Q psy4871 70 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAMYSRS------- 141 (494)
Q Consensus 70 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~------- 141 (494)
.......+.+ .++.+.+....+...+....-+..+++|+++|+ +||+++++++.++..++.++.+++..
T Consensus 7 ~aiLvlYl~~---~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~ 83 (654)
T TIGR00926 7 RTILVLYFLN---FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPL 83 (654)
T ss_pred HHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccch
Confidence 3444455553 778888889889999998899999999999995 89999999999999999988877421
Q ss_pred -HHHHHHHHHHHHhHhhhhhhhhhhheecccCCCC---chhHHHHHHHHHHHHHHHHHHhhhhh-----------hhHHH
Q psy4871 142 -VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI---RGTIGTLFQISCHLGILYTYVLGSEL-----------SYMNY 206 (494)
Q Consensus 142 -~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~~-----------~w~~~ 206 (494)
...++++-.+..+|.|+.-+...+...|.+++++ |-....++..+.++|.++++.+..++ +|...
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~a 163 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLA 163 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHH
Confidence 2346677788888999999999999999997643 56677778888899998887776543 48888
Q ss_pred HHHHHHHHHHHHHHh
Q psy4871 207 LTYSLIIPIIFTVTF 221 (494)
Q Consensus 207 f~~~~~~~~~~~~~~ 221 (494)
|.+.++..++.++..
T Consensus 164 F~i~~i~m~ia~lvf 178 (654)
T TIGR00926 164 FGVPAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888877766554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-08 Score=95.81 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=111.3
Q ss_pred HHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhh-hhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4871 73 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN-RIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 151 (494)
Q Consensus 73 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l 151 (494)
.+|.+.+ +.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.+++++++.+.+..++
T Consensus 230 ~~p~~~~---~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 306 (400)
T PRK11646 230 MLPIMVN---DIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL 306 (400)
T ss_pred hhhhhHH---hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4565553 54447788899988888777766666666665 5676777788888888888888888888888888889
Q ss_pred HHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-------h-hHHHHHHHHHHHHHHHHH
Q psy4871 152 QGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-------S-YMNYLTYSLIIPIIFTVT 220 (494)
Q Consensus 152 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-------~-w~~~f~~~~~~~~~~~~~ 220 (494)
.|++.+...|...+++.+..|+++||++.++.+....+|..+||.+++.+ + -...+++.++.+++..+.
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 99998888899999999999999999999999999999999999888774 1 134444445555444433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-08 Score=93.92 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=102.3
Q ss_pred HHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Q psy4871 74 LEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY-SRSVLGLYVMRTLQ 152 (494)
Q Consensus 74 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-a~~~~~l~~~r~l~ 152 (494)
.|.+.+ .+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..++.
T Consensus 223 ~~~~~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T PRK10091 223 KPYMMF---ISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFIC 299 (382)
T ss_pred HHHHHH---hcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345553 67889999999999999999999999999999999999999998888888766543 45556666677777
Q ss_pred HhHhhhhhhhhhh-heecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHh
Q psy4871 153 GFSMAAIYVISPM-YLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSYMNYLTYSLIIPIIFTVTF 221 (494)
Q Consensus 153 G~~~g~~~~~~~~-~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~~w~~~f~~~~~~~~~~~~~~ 221 (494)
+++.....+.... ...+..+++.++.. ..+....+|..+||.+++. .+|++.+.+.++.+++.....
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 300 CAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 7765554443333 33444444445543 3355667788888777765 378888888877766655443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=100.85 Aligned_cols=127 Identities=12% Similarity=0.100 Sum_probs=107.5
Q ss_pred hHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHH----HhhHHHHHH
Q psy4871 72 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY----SRSVLGLYV 147 (494)
Q Consensus 72 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----a~~~~~l~~ 147 (494)
..+|.+.++ .++.++.+.+++.....++..++.++.|++.||+|||+++.++..+.+++..+..+ ..+++.+..
T Consensus 276 ~~~p~~~~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (485)
T TIGR00711 276 YLLPLYLQQ--VLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIAL 353 (485)
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 344555433 57899999999999999999999999999999999999999999888888877663 135667777
Q ss_pred HHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 148 MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 148 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
..++.|++.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.
T Consensus 354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998887777888888999999999999999999999999887765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-08 Score=94.75 Aligned_cols=155 Identities=11% Similarity=-0.022 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHccchHhHHHhHHHHHH-hcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHH
Q psy4871 283 NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGC 360 (494)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 360 (494)
.-++.+....+.+...+..........+.+-+ +.+++. +.+....+..+...++++..|++.||+|.|+++..+.++.
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~ 110 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 33445555555555554444444444444433 455554 5666777788888889899999999999999999999888
Q ss_pred HHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4871 361 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYK 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~ 440 (494)
++..+.+.+..... .++.+..++..++.+++ +..+ +.....+++.+|+++||++.|+....+++|..+++.
T Consensus 111 ~i~~~~~~~a~~~~-------~~s~~~lli~r~l~Gig-g~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 111 IIPCVWLGIAVQNP-------NTPFGIFIVIALLCGFA-GANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHHHHccc-------CCCHHHHHHHHHHHHHH-HHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 88877666532111 13444555555566654 3333 445578899999999999999997777777776666
Q ss_pred hhhchh
Q psy4871 441 LFFLMD 446 (494)
Q Consensus 441 i~~~l~ 446 (494)
+.+.+.
T Consensus 182 l~p~~i 187 (462)
T PRK15034 182 VAPLVI 187 (462)
T ss_pred HHHHHH
Confidence 665543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-08 Score=97.18 Aligned_cols=135 Identities=10% Similarity=0.047 Sum_probs=103.9
Q ss_pred cchHhHHHhHHHHHHh---cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcc-cCchhHHHHhhHHHHHHHHHHHHHHHhh
Q psy4871 300 TGVQSIIAYANTIFAS---SETFL-PSDYISILFAIILLVSIFPSTYYIDR-AGRRVLFLVSSAGCSLFSFIAGLYYYVT 374 (494)
Q Consensus 300 ~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (494)
.+++.+..++|.++.+ .|.+. +.+.......+...++.+++|++.|| +|||+++..+.++.+++.+++.+.
T Consensus 24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~---- 99 (475)
T TIGR00924 24 FSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS---- 99 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc----
Confidence 3466777888888875 45554 66777788888999999999999999 899999999999999888776653
Q ss_pred hccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcch---hhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 375 IELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM---KAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
++.+...+...+.+.+.+. ..|...+++++.+|++. |+++.++.+...++|..++|.+.+++.+
T Consensus 100 --------~~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 100 --------IYPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred --------ccHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 2233334444455555433 34555578888888754 8889999999999999999999999887
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.5e-08 Score=90.21 Aligned_cols=152 Identities=19% Similarity=0.285 Sum_probs=121.0
Q ss_pred hhhcccchhhHHHhhhcCCCCCCCCC--CchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh
Q psy4871 63 TGMSFAWSAPVLEELLSKESPIPMSP--NEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR 140 (494)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~ 140 (494)
...+.....+..+.+.. +++.+. .+.++..+.+.++..++.++.|.++||+|||+.++.+.....++.+++++..
T Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T COG0477 14 LGLDLGLLSPALPLLLS---TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP 90 (338)
T ss_pred HHHhcchHHHHHHHHHH---HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence 33555666667776664 555555 4789999999999999999999999999999888888877666677777776
Q ss_pred h--HHHHHHHHHHHHhHhhhhhhhhhhheecccCC-CCchhHHHHHHH-HHHHHHHHHHHhhhhh------hhHHHHHHH
Q psy4871 141 S--VLGLYVMRTLQGFSMAAIYVISPMYLGEISET-SIRGTIGTLFQI-SCHLGILYTYVLGSEL------SYMNYLTYS 210 (494)
Q Consensus 141 ~--~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~~------~w~~~f~~~ 210 (494)
+ .+.+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.++..+ +||+.|.+.
T Consensus 91 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (338)
T COG0477 91 NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA 170 (338)
T ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 6 89999999999999999999999999999998 678888888887 5778888887666542 688866665
Q ss_pred HHHHHHH
Q psy4871 211 LIIPIIF 217 (494)
Q Consensus 211 ~~~~~~~ 217 (494)
.......
T Consensus 171 ~~~~~~~ 177 (338)
T COG0477 171 ALLGLLL 177 (338)
T ss_pred HHHHHHH
Confidence 5555433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.3e-08 Score=92.71 Aligned_cols=130 Identities=16% Similarity=0.095 Sum_probs=103.8
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
.+|.++.+.|++.+.+.++..+++++.+++.||+++|+++..+. +.++..++.++.++++...+.-++.|++.+...+.
T Consensus 235 ~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~ 313 (393)
T PRK11195 235 ALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVP 313 (393)
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 67899999999999999999999999999999999998888775 44555555566778887788888999998888888
Q ss_pred hhhheecccCCCC-chhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHH
Q psy4871 163 SPMYLGEISETSI-RGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLII 213 (494)
Q Consensus 163 ~~~~i~e~~~~~~-r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~ 213 (494)
..+.+.+..|++. +|++.++.+....+|..++..+.... .+++.|...+.+
T Consensus 314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL 370 (393)
T ss_pred HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8888888766554 79999999999999988887776552 344444444444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-07 Score=89.96 Aligned_cols=144 Identities=18% Similarity=0.274 Sum_probs=114.9
Q ss_pred CCC-CCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH-hhHHHHH----HHHHHHHhHh
Q psy4871 83 PIP-MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS-RSVLGLY----VMRTLQGFSM 156 (494)
Q Consensus 83 ~~~-~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a-~~~~~l~----~~r~l~G~~~ 156 (494)
+.+ .+....+.+.++..++-++.-.+.+++..|+|.|++++++.+.+++=..+.++. ++.+... +...+.|+..
T Consensus 236 ~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf 315 (400)
T PF03825_consen 236 ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTF 315 (400)
T ss_pred HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHH
Confidence 556 677778888888889999999999999999999999999999999988888887 4544433 3456799999
Q ss_pred hhhhhhhhhheecccCCCCchhHHHHHHH-HHHHHHHHHHHhhhhh----------hhHHHHHHHHHHHHHHHHHh-hcc
Q psy4871 157 AAIYVISPMYLGEISETSIRGTIGTLFQI-SCHLGILYTYVLGSEL----------SYMNYLTYSLIIPIIFTVTF-MFM 224 (494)
Q Consensus 157 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~-~~~~G~~~~~~~~~~~----------~w~~~f~~~~~~~~~~~~~~-~~~ 224 (494)
+..+..+..|+.+.+|++.|+++.+++.. ..++|..+|..+++++ .|...+.+.+++.++..+++ ++.
T Consensus 316 ~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~f 395 (400)
T PF03825_consen 316 GLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILF 395 (400)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998765 4678888888888763 35556666666666655444 444
Q ss_pred Cc
Q psy4871 225 PE 226 (494)
Q Consensus 225 ~e 226 (494)
+|
T Consensus 396 k~ 397 (400)
T PF03825_consen 396 KP 397 (400)
T ss_pred cC
Confidence 43
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-08 Score=99.18 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=104.4
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH---hhHHHHHHHHHHHHhHhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS---RSVLGLYVMRTLQGFSMAAI 159 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a---~~~~~l~~~r~l~G~~~g~~ 159 (494)
..|.++.+.|+....+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+. ++.+...+..++.|+|.|..
T Consensus 289 v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~ 368 (495)
T PRK14995 289 VHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASA 368 (495)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHH
Confidence 578999999999999999999999999999999999999999988888877665542 35666677889999999999
Q ss_pred hhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 160 YVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 160 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
.+.....+.+..|+++++.+.++.+....+|..+|+.+.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~ 409 (495)
T PRK14995 369 LLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGL 409 (495)
T ss_pred HHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888899999999999999999999999999999888765
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-08 Score=94.44 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHH
Q psy4871 288 VFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 366 (494)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 366 (494)
+.+.....+....+........|.+.++.+.+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 334444444444455566667888888877664 4556677788888899999999999999999999888888877776
Q ss_pred HHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 367 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
+... ++.+..++..++.+.+.+. ..+..++++.|.+|++.|+++.++.+....++..++|.+.+.+.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 85 CSLA------------ETSSLFLAGRFLQGIGAGC-CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHHh------------CcHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5542 2333334444444544433 23345578899999999999999999999999999999988876
Q ss_pred h
Q psy4871 447 K 447 (494)
Q Consensus 447 ~ 447 (494)
+
T Consensus 152 ~ 152 (392)
T PRK10473 152 L 152 (392)
T ss_pred h
Confidence 5
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.5e-09 Score=97.81 Aligned_cols=123 Identities=22% Similarity=0.251 Sum_probs=103.9
Q ss_pred hhhHHHhh-hcCCCCCCCC-CCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH---hhHHH
Q psy4871 70 SAPVLEEL-LSKESPIPMS-PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS---RSVLG 144 (494)
Q Consensus 70 ~~~~~~~~-~~~~~~~~~s-~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a---~~~~~ 144 (494)
....+|.+ . + +++.+ ..+.+++.+...++..++.++.|++.||+|+|+..........++.+...+. ++...
T Consensus 225 ~~~~~~~~l~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (352)
T PF07690_consen 225 FSFFLPLYLQ-E--VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVW 301 (352)
T ss_dssp HHHHHHHHCC-H--HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHH
T ss_pred hhcccchhhh-h--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45555664 4 3 67778 6888999999999999999999999999999888777777777666665443 35577
Q ss_pred HHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHH
Q psy4871 145 LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY 195 (494)
Q Consensus 145 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~ 195 (494)
.++.-++.|++.+...+....++.|..|+++||++.++.+...++|..++|
T Consensus 302 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 302 LIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 777889999999999999999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.7e-08 Score=91.75 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=97.2
Q ss_pred hHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhh-CchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4871 72 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRT 150 (494)
Q Consensus 72 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~ 150 (494)
..+|.+.+ +.+.+..+.+.+.+.+.++..++.++.|++.||+ +||+.+..+.++.+++.++..+.++..... .-+
T Consensus 218 ~~lp~~~~---~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 293 (355)
T TIGR00896 218 GWLPAILI---SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WAL 293 (355)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHH
Confidence 34566664 6788999999999999999999999999999999 567777788888888877777665433322 457
Q ss_pred HHHhHhhhhhhhhhhheecccC-CCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 151 LQGFSMAAIYVISPMYLGEISE-TSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 151 l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
+.|++.+..++...+.+.+..+ +++++...++.+....+|..++|.+.+.
T Consensus 294 l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~ 344 (355)
T TIGR00896 294 VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV 344 (355)
T ss_pred HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999988887777765554 4567888888887778888888877665
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.9e-08 Score=89.21 Aligned_cols=123 Identities=15% Similarity=0.190 Sum_probs=97.6
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhh----hhCchhHHH-hhHHHHHHHHHHHHHHhhH---------------
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN----RIGRKWSLL-MTGPITTASWIIAMYSRSV--------------- 142 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~-~~~~~~~i~~~~~~~a~~~--------------- 142 (494)
++|++....+.+--..-+...+.+++.|..+| ||||||.++ .+.+...++.++..++.++
T Consensus 61 ~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~r 140 (498)
T KOG0637|consen 61 SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPR 140 (498)
T ss_pred HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchH
Confidence 77888888888888888888999999999999 489776655 4566666777777776543
Q ss_pred --HHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchh-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q psy4871 143 --LGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGT-IGTLFQISCHLGILYTYVLGSELSYMN 205 (494)
Q Consensus 143 --~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~~G~~~~~~~~~~~~w~~ 205 (494)
.+++++--+.=++.-.....+-+++.|.+..+++-+ +++++....++|..+|..++.+.+|+-
T Consensus 141 ai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~ 206 (498)
T KOG0637|consen 141 AIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYK 206 (498)
T ss_pred HHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceE
Confidence 344555555566666788889999999998766666 999999999999999999998877754
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=93.94 Aligned_cols=131 Identities=10% Similarity=0.034 Sum_probs=104.6
Q ss_pred hhHHHHHHHHhHhhhhhch----HhhhhhhCchhHHHhhHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHhHhh
Q psy4871 91 GSWVVAIIEIGNYLSPIPA----GMLVNRIGRKWSLLMTGPITTASWIIAMYSRS---------VLGLYVMRTLQGFSMA 157 (494)
Q Consensus 91 ~g~~~s~~~~~~~i~~~~~----g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~---------~~~l~~~r~l~G~~~g 157 (494)
.+++.++..+...+..++. +++.+|++..+.+.+|.++.+++.+..+++.+ .+++++..++.|+|.+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5677777777777776666 66666666778899999999999988887765 4678899999999999
Q ss_pred hhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh--------------hhHHHHHHHHHHHHHHHHHh
Q psy4871 158 AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL--------------SYMNYLTYSLIIPIIFTVTF 221 (494)
Q Consensus 158 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~--------------~w~~~f~~~~~~~~~~~~~~ 221 (494)
...|...+++.+..|++.||+++|.+..+..+|..++..+.... +..+.|...++.+++..++.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~ 475 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM 475 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888877766421 25677777776666554444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=91.63 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=106.6
Q ss_pred ccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh--hHHH
Q psy4871 67 FAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SVLG 144 (494)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~--~~~~ 144 (494)
........+.+.+. .++ ++...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ +.+.
T Consensus 241 ~~~~~~~~~y~~~~--vl~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (428)
T PF13347_consen 241 FALMNTFLPYYFTY--VLG-NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWL 317 (428)
T ss_pred hhhhhhHHHHHHHH--Hhc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHH
Confidence 33334444444431 234 336788888999999999999999999999999999999999999999988886 9999
Q ss_pred HHHHHHHHHhHhhhhhhhhhhheecccCC-------CCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 145 LYVMRTLQGFSMAAIYVISPMYLGEISET-------SIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 145 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
+++.-++.|++.+...+...++++|..+. ++.|...+.+....-+|..+++.+.+.
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999873 334888888888888888777766544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.5e-08 Score=95.09 Aligned_cols=152 Identities=13% Similarity=0.108 Sum_probs=101.3
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHH--------HhhHHHH--HHHHHHHHH-H
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSL--------LMTGPIT--TASWIIAMY-S 139 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l--------~~~~~~~--~i~~~~~~~-a 139 (494)
...+|.+.++ .++.+..+.+++.++..++..++.++.|+++||+++|+.. ..+.... ++..+.... .
T Consensus 281 ~~~lp~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (465)
T TIGR00894 281 PTYLPTFISW--VLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS 358 (465)
T ss_pred HHHHHHHHHH--HhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555433 6789999999999999999999999999999998755321 1111111 111111111 2
Q ss_pred hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-------hhHHHHHHHHH
Q psy4871 140 RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-------SYMNYLTYSLI 212 (494)
Q Consensus 140 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-------~w~~~f~~~~~ 212 (494)
.+.+..++.-.+.+.+.+...+.......|..|+ .+|.+.++.+....+|.+++|.+.+.+ +|+..|.+.++
T Consensus 359 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~ 437 (465)
T TIGR00894 359 AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAF 437 (465)
T ss_pred CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHH
Confidence 2344444455555555555555555555676665 799999999999999999999887652 38889998888
Q ss_pred HHHHHHHHhhccC
Q psy4871 213 IPIIFTVTFMFMP 225 (494)
Q Consensus 213 ~~~~~~~~~~~~~ 225 (494)
..++..+...+++
T Consensus 438 ~~~i~~i~~~~~~ 450 (465)
T TIGR00894 438 VNILCVIFYLIFG 450 (465)
T ss_pred HHHHHHHHeeeee
Confidence 8777766655443
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=81.26 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=106.9
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
.+|+|+...+.+.+....-.++.+++.|.++||+|++...+.+..+..+..-.. +.-+++.=.++..+.|+........
T Consensus 294 rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~-l~Ft~lsPy~~m~~lGLsysllAcs 372 (459)
T KOG4686|consen 294 RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSG-LFFTFLSPYTSMTFLGLSYSLLACS 372 (459)
T ss_pred hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhh-HHhhhccHHHHHHHHhhhHHHHHHH
Confidence 899999999999999999999999999999999999988887766555443322 1223444467778888887777666
Q ss_pred hhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh-------hhHH-HHHHHHHHHHHHHHHhhcc
Q psy4871 163 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-------SYMN-YLTYSLIIPIIFTVTFMFM 224 (494)
Q Consensus 163 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-------~w~~-~f~~~~~~~~~~~~~~~~~ 224 (494)
....++-..|+++.|.+.+..+...++|..+.+++.+.+ .|-- .|.+.+.+++....+.+.+
T Consensus 373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 778888889999999999999999999999999998763 3433 3444444555544444444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-07 Score=90.26 Aligned_cols=134 Identities=13% Similarity=0.031 Sum_probs=98.5
Q ss_pred chHhHHHhHHH-HHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccc
Q psy4871 301 GVQSIIAYANT-IFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQ 378 (494)
Q Consensus 301 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (494)
.......+.|. +.++.+.+. +.++......++..++.++.|+++||+|||+.+..+.++..++.+++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~------- 88 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV------- 88 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh-------
Confidence 34566667775 556667664 567778888899999999999999999999999999998888887766541
Q ss_pred cCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 379 YEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
.+.+..++..++.+.+.+ .. +....++.+.+|+++|+.+.++......+|..+++.+.+.+..
T Consensus 89 ----~~~~~~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 89 ----QSYSVLLLLRLFIGIAGG-SF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred ----hhHHHHHHHHHHHHHhch-hh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 033344444455554432 23 3345788999999999999999998888888777777766554
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.6e-07 Score=89.81 Aligned_cols=114 Identities=10% Similarity=0.092 Sum_probs=89.2
Q ss_pred CCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHhHhhhhhh
Q psy4871 87 SPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY-----SRSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 87 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
++...+++.++..++.+++.+++++++||+|+|++++++..+..++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777899999999999999999999999888877766655433 34567777788889999999999
Q ss_pred hhhhheecccC-------CCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 162 ISPMYLGEISE-------TSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 162 ~~~~~i~e~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
...++++|..+ .+..|...+......-+|..+++.+.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 2334668888888777777777666544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-07 Score=89.32 Aligned_cols=134 Identities=6% Similarity=-0.069 Sum_probs=102.9
Q ss_pred hHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCC
Q psy4871 304 SIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIP 382 (494)
Q Consensus 304 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (494)
......|.+.++.+.+. +.+.......++..++++..+++.||+|||+.+..+..+.+++.+++..... .
T Consensus 21 ~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~---------~ 91 (410)
T TIGR00885 21 ITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE---------I 91 (410)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---------h
Confidence 34456677777777665 6778888899999999999999999999999999999998888776543321 1
Q ss_pred ccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 383 YTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
++.+..+...++.+.+.+.... ...+++.+..|++.+++..++.+....+|..++|.+.+.+..
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2344455556666666655443 333777888899999999999999999999999999988864
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-05 Score=74.77 Aligned_cols=330 Identities=13% Similarity=0.034 Sum_probs=160.3
Q ss_pred HHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH------h---------hHHHHHHHHHHHHhHhhhh
Q psy4871 95 VAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS------R---------SVLGLYVMRTLQGFSMAAI 159 (494)
Q Consensus 95 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a------~---------~~~~l~~~r~l~G~~~g~~ 159 (494)
.-.-.+..++.++..|.+.||..|.+++..++++.-++..+++.. . -...+++.-.+.|.-.-..
T Consensus 44 gl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~La 123 (432)
T PF06963_consen 44 GLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLA 123 (432)
T ss_pred HHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 334445667888889999999999999888877655444333221 0 1111222222222211111
Q ss_pred -hhhhhhheeccc------CCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhc-c---
Q psy4871 160 -YVISPMYLGEIS------ETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMF-M--- 224 (494)
Q Consensus 160 -~~~~~~~i~e~~------~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~-~--- 224 (494)
.....+.=-||. +++.+.+.++...-.--+.-+++|++.+. .+.+....+.++..++..+.=++ +
T Consensus 124 s~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~V 203 (432)
T PF06963_consen 124 SIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARV 203 (432)
T ss_pred HhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222233443 23334555555554445566666666555 45666555555555544432211 1
Q ss_pred -CcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccch
Q psy4871 225 -PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGV 302 (494)
Q Consensus 225 -~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (494)
...|. +..+++.++....-......++.......+...+.. ......|+. ++.+.+. +.+-..++++. .
T Consensus 204 Y~~~P~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~Y~~q~vfl-as~alalLY~T-----V 274 (432)
T PF06963_consen 204 YNSVPA-LAVKKRSSESESSSDEESSSESSSDPSILKRLWNPL--RTIIRGWRTYFRQPVFL-ASFALALLYFT-----V 274 (432)
T ss_pred HHhChH-hcCCCCCccccccccccccccccchhhHHHHHHHHH--HHHhccHHHHHhCHHHH-HHHHHHHHHHH-----H
Confidence 22222 111111111000000000000000000000000000 122344555 5444322 22222222221 1
Q ss_pred HhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCC
Q psy4871 303 QSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEI 381 (494)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (494)
..+...+..|+...|++. ..+..-....+.++.+.++..++.+|+|..+.-.++.....+++.+.......+
T Consensus 275 Lsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~------- 347 (432)
T PF06963_consen 275 LSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAP------- 347 (432)
T ss_pred hcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcC-------
Confidence 223334455666667764 455666778888899999999999999988877777766655554444333332
Q ss_pred Ccc-chHhHHHHHHHHHHhh----cccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy4871 382 PYT-SWVPFLSISLLGVFFN----LGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 441 (494)
Q Consensus 382 ~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i 441 (494)
..+ ....... ++.+...+ -++--....++.|..|+++||+..|+-+..+++...+.-.+
T Consensus 348 ~~~~~~~s~~~-l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 348 GSPFSSISAYL-LLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred CCCchhhHHHH-HHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111111 11111111 11222333678899999999999999999998887765544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.4e-08 Score=89.97 Aligned_cols=141 Identities=17% Similarity=0.216 Sum_probs=114.6
Q ss_pred CCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhh
Q psy4871 85 PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISP 164 (494)
Q Consensus 85 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~ 164 (494)
+.++...|.+.++..+.-++...+..++.+|+|.|+.++++.++.++=.++++++++.+.+.+.+.+.|+..+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheecccCCCCchhHHHH-HHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh-hccC
Q psy4871 165 MYLGEISETSIRGTIGTL-FQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF-MFMP 225 (494)
Q Consensus 165 ~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~-~~~~ 225 (494)
.|+++.+|++-.++...+ .+.+..+|..+.+.+++. +|.+..|++.+.+.+...++. +.++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 999999998876666666 356677777776666655 588888888887776665555 4454
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-07 Score=88.02 Aligned_cols=117 Identities=15% Similarity=0.028 Sum_probs=85.9
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH---H-HhhHHHHHHHHHHHHhHhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM---Y-SRSVLGLYVMRTLQGFSMAA 158 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~-a~~~~~l~~~r~l~G~~~g~ 158 (494)
.++.++.+.+++.+...++..++.++.|++.||+|||+++..+..+..+..+... . ..+++.+.++-.+.+.+.+.
T Consensus 224 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T PRK11102 224 LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSM 303 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999988776544433322 2 22455555555555555566
Q ss_pred hhhhhhhheecccCCCCchhHHHHHHH-HHHHHHHHHHHhhhh
Q psy4871 159 IYVISPMYLGEISETSIRGTIGTLFQI-SCHLGILYTYVLGSE 200 (494)
Q Consensus 159 ~~~~~~~~i~e~~~~~~r~~~~~~~~~-~~~~G~~~~~~~~~~ 200 (494)
..+....++.|..| ++++.+.++... ...+|..++++++..
T Consensus 304 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 304 ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666677778766 678999888654 356777777777543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-06 Score=80.15 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=89.6
Q ss_pred hHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheeccc
Q psy4871 92 SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEIS 171 (494)
Q Consensus 92 g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 171 (494)
+.+.-+-.+...+.-+.+.+..+|+..+.=...+.++..++.++.+++++.+.=+++-.+.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 33555555666677777888889888665566677788889999999999998899999999998888877777644 55
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhh-ccC
Q psy4871 172 ETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSYMNYLTYSLIIPIIFTVTFM-FMP 225 (494)
Q Consensus 172 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~~w~~~f~~~~~~~~~~~~~~~-~~~ 225 (494)
++ ...+.++.+.+.+.++|+..-.. ++-|..+.+..++.++..+..+ .+|
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 54 24566666666666666554322 2446677777776665555544 444
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-07 Score=87.29 Aligned_cols=146 Identities=16% Similarity=0.270 Sum_probs=97.5
Q ss_pred HHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCc---hhHHHh-hHHHHHHHHHHHHHHhhHHHHHHH
Q psy4871 73 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGR---KWSLLM-TGPITTASWIIAMYSRSVLGLYVM 148 (494)
Q Consensus 73 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr---r~~l~~-~~~~~~i~~~~~~~a~~~~~l~~~ 148 (494)
-+|.+.+ +.+.+.. .+...++..+...++ .++++||..| |+.... ..++.+++..+.+++.+.+..++.
T Consensus 214 wlp~~L~---~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (368)
T TIGR00903 214 WLEAALR---PAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAF 286 (368)
T ss_pred HHHHHHH---HCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 3555553 5556643 566666666655555 4677777654 333332 344444444444555555555555
Q ss_pred HHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHHHHhhccC
Q psy4871 149 RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-L-SYMNYLTYSLIIPIIFTVTFMFMP 225 (494)
Q Consensus 149 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-~-~w~~~f~~~~~~~~~~~~~~~~~~ 225 (494)
-.+.|++....++...++..|.+|++.|+++.++.+....+|.+++|.+... + +-+..|.+.+++.++..+...+++
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~ 365 (368)
T TIGR00903 287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLP 365 (368)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6667777777777788999999999999999999999999999888877654 3 666777777777777665554444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-07 Score=90.83 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=97.0
Q ss_pred chHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcc-cCchhHHHHhhHHHHHHHHHHHHHHHhhhcc
Q psy4871 301 GVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDR-AGRRVLFLVSSAGCSLFSFIAGLYYYVTIEL 377 (494)
Q Consensus 301 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (494)
+++.+..+++.++++ .|.+. +..+....+.....+..+++|+++|| +|||+++..+.++..++.+++.+..
T Consensus 29 ~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~------ 102 (489)
T PRK10207 29 GYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL------ 102 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc------
Confidence 356676677777654 45553 34455555665666777799999999 9999999999999999888776531
Q ss_pred ccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcch--hhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 378 QYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM--KAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
......++...+.+.+.+. ..|...+++.|.+|++. |+.+.++.+...++|.+++|.+.|++.+
T Consensus 103 -----~~~~ll~~~~~l~~ig~g~-~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 103 -----LKPDLIFIALGTIAVGNGL-FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred -----cchhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222344444544443 34555589999998874 5778999999999999999999999987
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-07 Score=83.35 Aligned_cols=342 Identities=14% Similarity=0.154 Sum_probs=206.9
Q ss_pred CCCCCCCchh-HHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4871 83 PIPMSPNEGS-WVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 83 ~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
+.|++..+.. -+.-+..-.+.+.-++.=.+.|..--|++++.-.+...+...+..+.++.+.+=+.-++.|...+ ...
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEI 113 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEI 113 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHH
Confidence 5566666542 23333444556666666779999999999999988888888889999999999999999998854 447
Q ss_pred hhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh------hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhC
Q psy4871 162 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 235 (494)
Q Consensus 162 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~------~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~ 235 (494)
+-++|+-+..+++++.++.+....+.-.|...|..++.. .++...-++......+..+..+++|..+|.+.-+.
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~ 193 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHR 193 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhc
Confidence 789999999999999999999888887777777777665 24555566666666666677788887776554444
Q ss_pred ChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHH
Q psy4871 236 QEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFA 314 (494)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (494)
+.++. ........++ +.+..+..+.. ...-...+++ .+++. ++...++.....++++....|...+.+
T Consensus 194 ~~~~~--~v~~~e~~~~---~~~~~~~l~~~-~~~l~~~l~~~y~np~-----ll~WSlWwAl~scg~~QV~nY~Q~LW~ 262 (433)
T KOG3810|consen 194 LEDKI--SVGDLEEMNP---QASYMSYLRGA-FVLLWRDLQECYSNPR-----LLKWSLWWALASCGYYQVTNYTQILWK 262 (433)
T ss_pred ccccc--eeccchhcCc---cchhhHHHHHH-HHHHHHHHHHHhcCch-----hhhhHHHHHHhhchhHHHHHHHHHHHH
Confidence 33311 1100000000 00000000000 0001112233 33332 334455555566677888888888877
Q ss_pred hcCCCcc---hhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHH
Q psy4871 315 SSETFLP---SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLS 391 (494)
Q Consensus 315 ~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (494)
+...... .+..=.+..+.+.++.++.|++.-.+.|..-+.++......+.+++... . ..+.|...+.
T Consensus 263 ~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-~---------t~~Iw~~Ya~ 332 (433)
T KOG3810|consen 263 EVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-Q---------TQHIWVCYAG 332 (433)
T ss_pred hhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-c---------ccceehhhhh
Confidence 7642212 2233345666677888888988766666533332222222222222111 1 3567888888
Q ss_pred HHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhcC
Q psy4871 392 ISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~ 450 (494)
.+++...+.+... +...-+++....+.-|...|+...+.-+-..+ +.-.+.|.+|
T Consensus 333 yvlfr~~y~l~it-iA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsi---lT~iVvd~~g 387 (433)
T KOG3810|consen 333 YVLFRVIYQLTIT-IATFQIARNLSSELFGLVFGINTFVALILQSI---LTLIVVDDRG 387 (433)
T ss_pred HHHHHhhHhhhhh-HHHHHHHHhhhhhhheeeeehHHHHHHHHHHh---heEEEEcccc
Confidence 8888888776554 33344555566677788888877665554443 3444444333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-07 Score=88.95 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=94.8
Q ss_pred HHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchH
Q psy4871 309 ANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWV 387 (494)
Q Consensus 309 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (494)
+|.+.++.+.+. .......++.++..++.++.|+++||+|||+++..+..+.+++.++.... ++.+.
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------------~~~~~ 106 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------------TSMTQ 106 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------------CCHHH
Confidence 344445555553 45566777788888999999999999999999999988888777766553 34444
Q ss_pred hHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 388 PFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
.++.-++.+.+.+. ..+..+.++.|.+|++.+++++++.+....++..++|.+.+.+.+
T Consensus 107 l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~ 165 (413)
T PRK15403 107 FLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH 165 (413)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555432 234455778899999999999999999999999999999888876
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.9e-07 Score=87.21 Aligned_cols=133 Identities=11% Similarity=0.023 Sum_probs=101.7
Q ss_pred hHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4871 302 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 380 (494)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (494)
...+.+++--.+++.+... --+......-.+.++.-++.+++++|+|+-+++..++....+-++.+.+.
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L---------- 456 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL---------- 456 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----------
Confidence 3444555555566654322 23345556667778888899999999999999998988888887776664
Q ss_pred CCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHH-HHHHHHHHHHhhhchhh
Q psy4871 381 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINIL-CTTLGLISYKLFFLMDK 447 (494)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~~~~i~~~i~~~l~~ 447 (494)
.++|..+..-++-++..+..+..+. +|++...|++.++++.++.... ..+|-.+|+++.|.+.+
T Consensus 457 --~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~ 521 (618)
T KOG3762|consen 457 --QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE 521 (618)
T ss_pred --cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence 5788888888888888888787666 8999999999999999988644 56777788888887777
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-07 Score=87.79 Aligned_cols=135 Identities=4% Similarity=-0.120 Sum_probs=100.6
Q ss_pred hHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4871 302 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 380 (494)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (494)
......+.|.+.++.+.+. +.+.......++..++.++.|++.||+|||+++..+..+.+++.+++.....
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-------- 113 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------- 113 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 3556667788777777664 6777888899999999999999999999999999999999988876532111
Q ss_pred CCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 381 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
.++.+..++..++.+.+.+.... ....++.+..|++.|+...++.+....+|..+++.+.+.+.
T Consensus 114 -a~~~~~ll~~r~l~G~g~g~~~~-~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 -IMNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12444555666666776665443 34466778777776667899999999999999998876554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.3e-07 Score=87.97 Aligned_cols=132 Identities=13% Similarity=0.046 Sum_probs=97.5
Q ss_pred hHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCC
Q psy4871 304 SIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIP 382 (494)
Q Consensus 304 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (494)
......|.+.++.+.+. +.+.......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 93 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA------------ 93 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------------
Confidence 33334577777777664 56677778888899999999999999999999998888877777665442
Q ss_pred ccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 383 YTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
++.+..++..++.+++.+. ..+....+..|.++.+.++.+.++.+....++..++|.+.+.+.+.
T Consensus 94 ~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 94 HSLTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred ccHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333444444455544432 2344446778888988999999999999999999999999888763
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=89.46 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=131.4
Q ss_pred HhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhh
Q psy4871 62 TTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRS 141 (494)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~ 141 (494)
+.|...+.+...+=... + |.+..+...|.....-..|-++.-++.+++..|+|+-+++..++.+..+=.+...+.+|
T Consensus 382 ~mG~g~~lv~tFLfWHl-e--d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n 458 (618)
T KOG3762|consen 382 VMGAGVGLVFTFLFWHL-E--DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN 458 (618)
T ss_pred HHHHHHHHHHHHHHHHH-h--hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC
Confidence 33444444434333223 2 78888888898888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHH-----HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy4871 142 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQI-----SCHLGILYTYVLGSELSYMNYLTYSLIIPII 216 (494)
Q Consensus 142 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~-----~~~~G~~~~~~~~~~~~w~~~f~~~~~~~~~ 216 (494)
.|..+..-+++|+..+..+.+..+|++...||+.|..+.++.+. +.++|.++|..+...++-|..|.+.++.+++
T Consensus 459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~ 538 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV 538 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888887654 3466666666666668889999999888887
Q ss_pred HHHHhhcc
Q psy4871 217 FTVTFMFM 224 (494)
Q Consensus 217 ~~~~~~~~ 224 (494)
.+++...+
T Consensus 539 ~l~~~~~i 546 (618)
T KOG3762|consen 539 TLALFISI 546 (618)
T ss_pred HHHHHHHh
Confidence 77655443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.1e-07 Score=84.49 Aligned_cols=146 Identities=10% Similarity=0.058 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-c-hhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHH
Q psy4871 286 AFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-P-SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLF 363 (494)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 363 (494)
..++++.+.++..+= ....+-.|.+.++.|++. + .+.+...+..+..+..+.+|++.||+|.|+++..+.+..++.
T Consensus 28 ~~~~lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~ 105 (511)
T TIGR00806 28 LVLYLCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCV 105 (511)
T ss_pred HHHHHHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 444455555554442 344455677777777775 5 667888888999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy4871 364 SFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF 443 (494)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~ 443 (494)
.+++++.. +.+...+.-+++|++-+..+ ..+.++...+|+++|+++.|+.++...+|.++++++.+
T Consensus 106 t~L~~fa~------------Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~q 171 (511)
T TIGR00806 106 WLLLLLGT------------SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQ 171 (511)
T ss_pred HHHHHHHH------------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888752 34456677777787777655 44588999999999999999999999999999999999
Q ss_pred chhh
Q psy4871 444 LMDK 447 (494)
Q Consensus 444 ~l~~ 447 (494)
++..
T Consensus 172 ll~s 175 (511)
T TIGR00806 172 LLVT 175 (511)
T ss_pred HHHh
Confidence 9554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.6e-07 Score=81.94 Aligned_cols=149 Identities=13% Similarity=0.042 Sum_probs=105.6
Q ss_pred HHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHH
Q psy4871 290 MAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAG 368 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 368 (494)
...+.+...++..+.+....+.+-.+.+++. +...+..+..+.+.+.++..|++.||+|.|+....+.++..+-++.+.
T Consensus 18 ~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~ 97 (417)
T COG2223 18 LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLA 97 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444445566664 677888889999999999999999999999999999999888888877
Q ss_pred HHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 369 LYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
+....+ +.|..++..++.+.+ .+..++....+++.+|++.+|.++|+.. .+++|..+...+.+.+..+
T Consensus 98 ~a~~~~---------~~~~ll~~gll~G~~--GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~ 165 (417)
T COG2223 98 FAVTYP---------STWQLLVIGLLLGLA--GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA 165 (417)
T ss_pred HHccCC---------chHHHHHHHHHHhcc--cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence 764222 224444444444443 2333455578999999999999999999 8999988888888888775
Q ss_pred cC
Q psy4871 449 IG 450 (494)
Q Consensus 449 ~~ 450 (494)
-+
T Consensus 166 ~g 167 (417)
T COG2223 166 FG 167 (417)
T ss_pred Hh
Confidence 44
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.7e-07 Score=85.73 Aligned_cols=126 Identities=15% Similarity=0.009 Sum_probs=93.1
Q ss_pred HHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHh
Q psy4871 310 NTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVP 388 (494)
Q Consensus 310 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (494)
|.+.++.+.+. +.+....+..++..++.++.|+++||+|||+.+..+..+..++.++..+. ++.+..
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~l 97 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------------ESAAQL 97 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------------cCHHHH
Confidence 44456666654 56677778888889999999999999999999998888877776665542 233344
Q ss_pred HHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 389 FLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
++..++.+.+.+.. .+...++..|.+|++.++...+..+....++..++|.+.+.+.+.
T Consensus 98 ~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 156 (401)
T PRK11043 98 LVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH 156 (401)
T ss_pred HHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444443322 233346788999999899999999989999999999999988774
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-07 Score=66.89 Aligned_cols=81 Identities=15% Similarity=0.091 Sum_probs=73.5
Q ss_pred hhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhH
Q psy4871 63 TGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSV 142 (494)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~ 142 (494)
.|+....++|++|.+++ |.++|.++.|++.+..++||.+|++...++.++..+++.+..+.+...+..+.+++.++.
T Consensus 4 mGigRFayTplLP~M~~---~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQA---DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred hhhHHHHHHhHhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 35666778999999996 999999999999999999999999999999999889999999999999999999999887
Q ss_pred HHHH
Q psy4871 143 LGLY 146 (494)
Q Consensus 143 ~~l~ 146 (494)
+...
T Consensus 81 ~~w~ 84 (85)
T PF06779_consen 81 WLWS 84 (85)
T ss_pred HHHh
Confidence 6543
|
Note that many members are hypothetical proteins. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-06 Score=84.31 Aligned_cols=112 Identities=9% Similarity=0.082 Sum_probs=86.0
Q ss_pred CchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhHhhhhhhhhhhh
Q psy4871 89 NEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY--SRSVLGLYVMRTLQGFSMAAIYVISPMY 166 (494)
Q Consensus 89 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~~~~~~ 166 (494)
...+.+.....++..++.+++++++||+|+|+.+.++.++.+++.+...+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888889999999999999999999888776654443333 3467778888899999999999999999
Q ss_pred eecccCC-------CCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 167 LGEISET-------SIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 167 i~e~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
++|..+. +..|...+.......+|..+++.+++.
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988752 224667788877777888777776654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-06 Score=78.52 Aligned_cols=167 Identities=10% Similarity=0.085 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhC-chhHHHhhH
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG-RKWSLLMTG 126 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~ 126 (494)
..|.+.+...+-.+......++. |.+.. |-|+|..+.|++.+...+.....++....+++|.. +|+..+...
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WL----P~ili---~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~ 281 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWL----PAILI---DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL 281 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHH----HHHHH---HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 36666666665555544444443 45553 78999999999999999999999999999999755 788888888
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCc-hhHHHHHHHHHHHHHHHHHHhhhhh----
Q psy4871 127 PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR-GTIGTLFQISCHLGILYTYVLGSEL---- 201 (494)
Q Consensus 127 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r-~~~~~~~~~~~~~G~~~~~~~~~~~---- 201 (494)
+++.++.+.+.+.+.-..++. -++.|+|.|..++.+...+.+..+..++ +...++.+....+=...||.+.+++
T Consensus 282 ~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~ 360 (395)
T COG2807 282 LLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT 360 (395)
T ss_pred HHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence 888888888888775444444 5999999999999999999998875543 4444444444444445577777664
Q ss_pred -hhHHHHHHHHHHHHHHHHHhh
Q psy4871 202 -SYMNYLTYSLIIPIIFTVTFM 222 (494)
Q Consensus 202 -~w~~~f~~~~~~~~~~~~~~~ 222 (494)
+|+..++..+...++..+.-+
T Consensus 361 gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 361 GSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred CChHHHHHHHHHHHHHHHHHHh
Confidence 799888887777766655443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=4e-07 Score=73.63 Aligned_cols=108 Identities=17% Similarity=0.066 Sum_probs=84.1
Q ss_pred HHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccch
Q psy4871 328 LFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLF 407 (494)
Q Consensus 328 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (494)
...++.+++.++.+++.||+|||+.+..+.....++.+.+... .+.+......++.+.+.+. ..+..
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~-~~~~~ 72 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------------SNITVLIIARFLQGFGAAF-ALVAG 72 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHH-HHHhH
Confidence 3456778899999999999999999988888777776655442 2344445555555555543 33556
Q ss_pred hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhh
Q psy4871 408 TPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 448 (494)
Q Consensus 408 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 448 (494)
..+..|.+|++.|+++.++.+....++..+++.+.+.+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 113 (141)
T TIGR00880 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF 113 (141)
T ss_pred HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc
Confidence 68899999999999999999999999999999999998754
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-07 Score=83.95 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=122.8
Q ss_pred hhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhC--chhHHHhhHHHHHHHHHHHHHHh
Q psy4871 63 TGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG--RKWSLLMTGPITTASWIIAMYSR 140 (494)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~i~~~~~~~a~ 140 (494)
.+...++.-|.++.+..| .+..+..+.|+..--..+.+.++..+.|.++||++ |-.....+++..++++....+++
T Consensus 282 ~n~~lafLePtlslwm~e--~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~ 359 (464)
T KOG3764|consen 282 SNSSLAFLEPTLSLWMLE--TMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT 359 (464)
T ss_pred ccchHHHhCcccHHHHHH--hccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh
Confidence 344555566777765544 56655558898888889999999999999999999 54444556666777777778899
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCC------chhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHH
Q psy4871 141 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI------RGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYS 210 (494)
Q Consensus 141 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~ 210 (494)
++.++++-++..|++.+...........+....++ -|...++...++.+|..+||.+++. +|++|.-.+.
T Consensus 360 ~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii 439 (464)
T KOG3764|consen 360 SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII 439 (464)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence 99999999999999888877777666666665544 3678888999999999999999887 5888888888
Q ss_pred HHHHHHHHHHhhc
Q psy4871 211 LIIPIIFTVTFMF 223 (494)
Q Consensus 211 ~~~~~~~~~~~~~ 223 (494)
++..++...+...
T Consensus 440 g~~n~iyapvl~l 452 (464)
T KOG3764|consen 440 GILNLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHHHHHH
Confidence 8887776654433
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=9e-07 Score=76.17 Aligned_cols=312 Identities=11% Similarity=0.085 Sum_probs=165.0
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
.++....++|.+.-..+-...+...+.|-++|+-|||+.-+.-++.+.++++ .-.++.|-.++++|.+-|++.+..+..
T Consensus 66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSa 144 (454)
T KOG4332|consen 66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSA 144 (454)
T ss_pred hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHH
Confidence 7888889998888777777788888899999999999976665555555442 345688999999999999999888876
Q ss_pred hhh-heecccCCCCchhHHHHHHH--------HHHHHHHHHHHhhhh------hhhHHHHHHHHHHHHHHHHHhhccCcc
Q psy4871 163 SPM-YLGEISETSIRGTIGTLFQI--------SCHLGILYTYVLGSE------LSYMNYLTYSLIIPIIFTVTFMFMPES 227 (494)
Q Consensus 163 ~~~-~i~e~~~~~~r~~~~~~~~~--------~~~~G~~~~~~~~~~------~~w~~~f~~~~~~~~~~~~~~~~~~es 227 (494)
--+ ++.|.-. +|+.-.-+... +..+=.+++++.+.. +|--.+|-..+.+..+...+. +.
T Consensus 145 FEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvi--l~-- 218 (454)
T KOG4332|consen 145 FESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVI--LS-- 218 (454)
T ss_pred HHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH--Hh--
Confidence 655 4555542 34333222221 222223334444333 233345544444333332221 11
Q ss_pred hhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHH
Q psy4871 228 PYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSII 306 (494)
Q Consensus 228 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (494)
.|-..-+++.|.++.+...++ ..+. ..++ +..+...+...+....+....
T Consensus 219 -~W~ENygdps~~kdlltqf~g------------------------aa~aiaSD~----ki~LLG~iqsLFE~smytFVF 269 (454)
T KOG4332|consen 219 -SWSENYGDPSENKDLLTQFKG------------------------AARAIASDE----KIALLGAIQSLFEGSMYTFVF 269 (454)
T ss_pred -hhhhccCChhhhHHHHHHhhH------------------------hHHHHhcch----HHHHHHHHHHHHhhhhheeee
Confidence 111112222222222222211 0111 1111 222222233222222233444
Q ss_pred HhHHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhhcccCch--hHHHHhhHHHHHHHHHHHHHHHhhhccccCCCcc
Q psy4871 307 AYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRR--VLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYT 384 (494)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (494)
.|.|.+--+. ....-+.+..-+.+..++|+-+..++..|-..| ..+.+.+....+.+.+........ +. ..+
T Consensus 270 LWTPaLspn~-e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vs--P~---kes 343 (454)
T KOG4332|consen 270 LWTPALSPND-EEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVS--PS---KES 343 (454)
T ss_pred eecccCCCCc-ccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccC--CC---cCC
Confidence 4656532111 112445666667777777777776666554333 345555555544444433322211 11 123
Q ss_pred chHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHH
Q psy4871 385 SWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLI 437 (494)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i 437 (494)
+...++.++++-.+.++.+..+. -+-.+..|.+.|++.+-+...--++...+
T Consensus 344 ~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNfFRvPLnifvCl 395 (454)
T KOG4332|consen 344 PSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNFFRVPLNIFVCL 395 (454)
T ss_pred chHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhheechhhHhhhh
Confidence 33446677777777776554444 77888999999988765554444443333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=5e-07 Score=89.08 Aligned_cols=118 Identities=11% Similarity=0.057 Sum_probs=104.0
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH----------hhHHHHHHHHHHH
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS----------RSVLGLYVMRTLQ 152 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a----------~~~~~l~~~r~l~ 152 (494)
.+|.++.+.|.+.+...++..++....+.+.+|++.|+++.++.++.+++.+...+. ++.+.++..-++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 789999999999999999999999999999999999999999999999888654311 3444556677899
Q ss_pred HhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 153 GFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 153 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
+++.+..+.+...++.+.+|++++|...++.....++|..+++.+++.
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~ 409 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL 409 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887765
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-07 Score=82.79 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=88.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHH-HHHHHHHh
Q psy4871 321 PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLS-ISLLGVFF 399 (494)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 399 (494)
-++.+...+++..++.++..|.++||+|||.++..+.+..++...+.+... +. ..++. =++.|.+
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~------------~F-~afv~aR~l~Gi~- 134 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR------------NF-AAFVLARFLGGIF- 134 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH------------HH-HHHHHHHHhhhhc-
Confidence 366778889999999999999999999999999999988888766655531 22 12222 2233332
Q ss_pred hcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 400 NLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 400 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
-+...+..++++|++++++|+.+++.++....+|.++||.+.|++..
T Consensus 135 -kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 135 -KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 23334556999999999999999999999999999999999999876
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.9e-06 Score=67.51 Aligned_cols=127 Identities=20% Similarity=0.282 Sum_probs=100.0
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRT 150 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~ 150 (494)
.+++..+. ++..-++++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.
T Consensus 20 ~svi~s~~-~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~ 97 (156)
T PF05978_consen 20 ESVIHSVH-ERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASA 97 (156)
T ss_pred HHHHHHHh-hcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHH
Confidence 44444444 211134455555555677777788888999999999999999999999988655443 5678899999999
Q ss_pred HHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q psy4871 151 LQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGS 199 (494)
Q Consensus 151 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 199 (494)
+.|++.+..++....++.+..++++|++..+++......+.++|.++..
T Consensus 98 l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 98 LLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888887777777776643
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.4e-05 Score=73.38 Aligned_cols=114 Identities=4% Similarity=0.024 Sum_probs=86.7
Q ss_pred CCchhHHHHHHHHhHhhh-hhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH----hh---------------------
Q psy4871 88 PNEGSWVVAIIEIGNYLS-PIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS----RS--------------------- 141 (494)
Q Consensus 88 ~~~~g~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a----~~--------------------- 141 (494)
...+.++-+...+...+. .++.+++++|++|++++-+....+....++.++. ++
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 357888888888877776 8999999999999999988888877777776654 11
Q ss_pred ------HHHHHHHHHHHHhHhhhhhh-hhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy4871 142 ------VLGLYVMRTLQGFSMAAIYV-ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 201 (494)
Q Consensus 142 ------~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 201 (494)
.|...+.-+...+-...... .-..++.|.++.++-.|..++.+.+.++|.++++.+..++
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333344444444444 6788999999999999999999999999999999887664
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.5e-06 Score=80.67 Aligned_cols=154 Identities=15% Similarity=0.097 Sum_probs=95.9
Q ss_pred HHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhc----ccCchhHHHHh-hHHHHHH
Q psy4871 290 MAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYID----RAGRRVLFLVS-SAGCSLF 363 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~ 363 (494)
........+++ +.....+.+.+++..|.+. ..+....+..+.+++..++.|+++| |+|||+.++.. .....++
T Consensus 9 ~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~ 87 (477)
T TIGR01301 9 VASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFA 87 (477)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHH
Confidence 33333333433 4566667777888887764 5666777788899999999999999 59999987765 4455555
Q ss_pred HHHHHHHHHhhhccc--cCCCccc---hHhHHHHHHHHHHhhcccccchhhhhcccCCcchh--hHHHHHHHHHHHHHHH
Q psy4871 364 SFIAGLYYYVTIELQ--YEIPYTS---WVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMK--AVSCAVINILCTTLGL 436 (494)
Q Consensus 364 ~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~~~~~ 436 (494)
+.++.+......... .+..... +..++.+.+..+.......|. .++++|..|+++| +.+.++.+....+|+.
T Consensus 88 l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i 166 (477)
T TIGR01301 88 VILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNV 166 (477)
T ss_pred HHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 555544321100000 0000011 122222333333444434444 4899999998865 5799999999999999
Q ss_pred HHHHhhhch
Q psy4871 437 ISYKLFFLM 445 (494)
Q Consensus 437 i~~~i~~~l 445 (494)
+++.+.+..
T Consensus 167 lg~~~g~~~ 175 (477)
T TIGR01301 167 LGYAAGAYS 175 (477)
T ss_pred HHHHHHHHH
Confidence 999887764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-05 Score=76.79 Aligned_cols=129 Identities=11% Similarity=0.104 Sum_probs=98.7
Q ss_pred hhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh--hHHHHHH
Q psy4871 70 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SVLGLYV 147 (494)
Q Consensus 70 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~--~~~~l~~ 147 (494)
.+.....+.+. -++.++....+.......+.+++.+++..+.+|+|+|+++.++.++..++.++..+.+ +.+.+++
T Consensus 255 ~~s~~~yy~~y--~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~ 332 (467)
T COG2211 255 RGSIMVYYVTY--VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVV 332 (467)
T ss_pred HhhhhheeEEE--EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Confidence 34444444421 3344555566777788888888899999999999999999999999999999988876 7888899
Q ss_pred HHHHHHhHhhhhhhhhhhheecccCC-------CCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 148 MRTLQGFSMAAIYVISPMYLGEISET-------SIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 148 ~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
..++.++|.+...+...++++|..+- +.-|...+......=+|..++..+.++
T Consensus 333 ~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 333 ALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887643 223667777776666666666654433
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.6e-05 Score=68.39 Aligned_cols=140 Identities=14% Similarity=0.060 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhh-----hhCchhHHHh-hH
Q psy4871 53 EAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN-----RIGRKWSLLM-TG 126 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~l~~-~~ 126 (494)
+..+.+.....|.-.+... .+|.+.+ .-|.|.++.+...-++ ..+ ---++|.++.| |+||||.-++ +.
T Consensus 33 illLl~LYllQGiP~GL~~-~iP~lL~---ak~vSyt~~a~fS~ay-~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q 106 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPLGLIG-AIPLLLQ---AKGVSYTSQAIFSFAY-WPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQ 106 (510)
T ss_pred HHHHHHHHHHcCCchhHhh-hhHHHhc---CCCcchhhhhhhhhhh-hHH-HHHHHHHhhhHHHHHHhhccccceeeehH
Confidence 3444555667788888888 7888885 6677777765532221 111 12467888889 9998876544 33
Q ss_pred HHHHHHHHHHHHH-----------hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHH
Q psy4871 127 PITTASWIIAMYS-----------RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY 195 (494)
Q Consensus 127 ~~~~i~~~~~~~a-----------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~ 195 (494)
.+.+..+.+.+.- ++...+....++.-+..+.--.+.-.+.-.+..+++.|.+......+...|.+++.
T Consensus 107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~ 186 (510)
T KOG3574|consen 107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN 186 (510)
T ss_pred HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence 4444444433331 23344444556666776776677777777788889999999999999999998886
Q ss_pred Hhh
Q psy4871 196 VLG 198 (494)
Q Consensus 196 ~~~ 198 (494)
.+-
T Consensus 187 ~if 189 (510)
T KOG3574|consen 187 VVF 189 (510)
T ss_pred cee
Confidence 653
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.9e-06 Score=82.30 Aligned_cols=136 Identities=12% Similarity=0.005 Sum_probs=88.9
Q ss_pred hHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4871 302 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 380 (494)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (494)
.+.+..+.+.+.++.|++. +.+....+.. ......++.|++.||+|+|+++.++.++..++.+++++.....
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~------ 115 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV------ 115 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 4566777888877777663 3333333322 2224555789999999999999999999999998877642100
Q ss_pred CCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 381 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
...+.+...+..++.+.+.+.... .....+.+.+| +.||.+.|+......+|+++.+.+...+.
T Consensus 116 i~~s~~~l~l~r~l~G~G~~~~~~-~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 116 IEGSVVRLSVYNGLMTLGCMLFDL-GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012344444455555555433232 33356677887 57999999999999999986555544443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-05 Score=73.57 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=115.1
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhh-hhCchhHHHhhHHHHHHHHHHHHHH---hhHHHHHHHHHHHHhHhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN-RIGRKWSLLMTGPITTASWIIAMYS---RSVLGLYVMRTLQGFSMAA 158 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~~a---~~~~~l~~~r~l~G~~~g~ 158 (494)
-|+++..+...+.+....|..++....|++.. |.++|++-.+++.+..++..+..++ .+.+.+...-++.|++.|.
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~ 317 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL 317 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence 68999999999999999999999999998887 7788888888888888777665544 5788999999999999999
Q ss_pred hhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh--------------hhhHHHHHHHHHHHHHHHHHh
Q psy4871 159 IYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE--------------LSYMNYLTYSLIIPIIFTVTF 221 (494)
Q Consensus 159 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--------------~~w~~~f~~~~~~~~~~~~~~ 221 (494)
......+...+...+++.|.++|.+.....++..++.++++. .+|-.+|.+.++..++...+.
T Consensus 318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888777777766654 246666777666665555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.1e-06 Score=81.28 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=122.3
Q ss_pred HHHHHhhhcccchhhHHHhhhcCCCCCCCCC---CchhHHHHHHHHhHhhhhhchHhhhhhhCc-hhHHHhhHHHHHHHH
Q psy4871 58 IAAFTTGMSFAWSAPVLEELLSKESPIPMSP---NEGSWVVAIIEIGNYLSPIPAGMLVNRIGR-KWSLLMTGPITTASW 133 (494)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~ 133 (494)
+..+..|+.+.......|....+ -++.++ ...+++...+.++..+++++.|.+..+++| |+.++++.+++.++.
T Consensus 317 vi~fi~G~~~~s~~~l~p~~~~~--vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~ 394 (599)
T PF06609_consen 317 VISFISGMNFFSVNILWPQQVVN--VFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFC 394 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 34444554444444445544321 233333 357888889999999999999999999886 455567776666554
Q ss_pred HHHHHH--hhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-----------
Q psy4871 134 IIAMYS--RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----------- 200 (494)
Q Consensus 134 ~~~~~a--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----------- 200 (494)
-+++.. +|....+..-++.|++.|...........-..|+++-+.+.++..+.-.+|..+|..+...
T Consensus 395 Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~ 474 (599)
T PF06609_consen 395 GAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELP 474 (599)
T ss_pred HHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHH
Confidence 444433 3555667778899999999988888888888999999999999888888877776544311
Q ss_pred -------------------------------------------------------hhhHHHHHHHHHHHHHHHHHhhccC
Q psy4871 201 -------------------------------------------------------LSYMNYLTYSLIIPIIFTVTFMFMP 225 (494)
Q Consensus 201 -------------------------------------------------------~~w~~~f~~~~~~~~~~~~~~~~~~ 225 (494)
.++|++|+....++.+..+..++++
T Consensus 475 ~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~ 554 (599)
T PF06609_consen 475 KYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLG 554 (599)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0388999999999999988889988
Q ss_pred cchhH
Q psy4871 226 ESPYF 230 (494)
Q Consensus 226 esp~~ 230 (494)
+..++
T Consensus 555 d~~~~ 559 (599)
T PF06609_consen 555 DIDKY 559 (599)
T ss_pred ChHHh
Confidence 75544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.9e-07 Score=82.99 Aligned_cols=119 Identities=13% Similarity=0.218 Sum_probs=98.7
Q ss_pred cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHH
Q psy4871 316 SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISL 394 (494)
Q Consensus 316 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (494)
.+.+. ..+++.....+...+.++++|++.||++|++++.+|..+..++.+..++.. ..|...+.=.+
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~------------~Fwq~~l~R~~ 130 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN------------HFWQVLLCRGF 130 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 34443 566888889999999999999999999999999999999999988887752 45566666667
Q ss_pred HHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 395 LGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
.|++-+. +.|+..++++|.+|...|++.+++.+....+|..+|-.+.+.+.+
T Consensus 131 vGiGeAs-~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~ 182 (493)
T KOG1330|consen 131 VGIGEAS-YSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS 182 (493)
T ss_pred hccchhh-hcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc
Confidence 7777554 567777999999999999999999999999999888777777766
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=81.53 Aligned_cols=172 Identities=14% Similarity=0.052 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhH--------HHH-HHHHhHhhhhhchHhhhhhhCchhH
Q psy4871 51 GSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSW--------VVA-IIEIGNYLSPIPAGMLVNRIGRKWS 121 (494)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~--------~~s-~~~~~~~i~~~~~g~l~dr~Grr~~ 121 (494)
.-++..+...|+.-....-.+.....+.+ ..++.+.+... ... +-..++..|..+...+.|++|||++
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~---~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i 380 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS---AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI 380 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH---hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH
Confidence 45556666666655444434444445553 55555544333 111 1223344477778899999999999
Q ss_pred HHhhHHHHHHHHHHHHHHhh-H-------HHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHH
Q psy4871 122 LLMTGPITTASWIIAMYSRS-V-------LGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILY 193 (494)
Q Consensus 122 l~~~~~~~~i~~~~~~~a~~-~-------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~ 193 (494)
.+.+.+++.+..+..+...| . ....+..++.-+|-+ .....+-+|.+|.+-|+...++.....-+|.++
T Consensus 381 q~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAiv 457 (538)
T KOG0252|consen 381 QLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIV 457 (538)
T ss_pred HHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHH
Confidence 99999999999998888765 1 222233333334322 334566789999999999999999998889888
Q ss_pred HHHhhhh---------hhhHHHHHHHHHHHHHHHHHhhccCcch
Q psy4871 194 TYVLGSE---------LSYMNYLTYSLIIPIIFTVTFMFMPESP 228 (494)
Q Consensus 194 ~~~~~~~---------~~w~~~f~~~~~~~~~~~~~~~~~~esp 228 (494)
+...-.+ .+.|+.+++.+.+.++..+..+++||+.
T Consensus 458 g~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 458 GAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 8766543 4789999999999999888889999975
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.6e-06 Score=86.96 Aligned_cols=143 Identities=16% Similarity=0.096 Sum_probs=102.3
Q ss_pred hHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccC--
Q psy4871 304 SIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE-- 380 (494)
Q Consensus 304 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 380 (494)
....-++.+-++.+.+. +.+.+...+.++.+++.++.+++.||.+||+.+.++.++++++.+++++.........++
T Consensus 51 ~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~ 130 (633)
T TIGR00805 51 LVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT 130 (633)
T ss_pred HHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence 33334455555566654 667778888899999999999999999999999999999999998877653211000000
Q ss_pred ----------------------------------CC--c-cchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHH
Q psy4871 381 ----------------------------------IP--Y-TSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVS 423 (494)
Q Consensus 381 ----------------------------------~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~ 423 (494)
.. . .....++.-++.|++.+. ..++..+++.|.+|++.|+..
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~-~~~~~~~~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP-IFPLGISYIDDFAKSKNSPLY 209 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc-chhcCchhhhccCCccccHHH
Confidence 00 0 112233444555555443 345566899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 424 CAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 424 ~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
.|+.+....+|..+++.+.+.+.+
T Consensus 210 ~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 210 IGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999999999999999998875
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.8e-05 Score=75.01 Aligned_cols=112 Identities=12% Similarity=0.106 Sum_probs=73.1
Q ss_pred CCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhHhhhhhhhhhh
Q psy4871 88 PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SVLGLYVMRTLQGFSMAAIYVISPM 165 (494)
Q Consensus 88 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~~~~ 165 (494)
+...+.+.+.+.++.+++.+++++++||+|+|+++..+..+.++..++..+.+ +.+.+++.-++.|++.+...+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888899999999999999999999988766555544444433332 2334445556678877777766677
Q ss_pred heecccC-------CCCchhHHHHHHHHHHHHHHHHHHhhh
Q psy4871 166 YLGEISE-------TSIRGTIGTLFQISCHLGILYTYVLGS 199 (494)
Q Consensus 166 ~i~e~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~ 199 (494)
++.|..+ ++..|...+......-+|..+++.+++
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g 382 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG 382 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665 222355456655566666666555543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-08 Score=99.47 Aligned_cols=143 Identities=19% Similarity=0.184 Sum_probs=91.0
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHH--H---Hhh-----HHHHHHHHHHH
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM--Y---SRS-----VLGLYVMRTLQ 152 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~---a~~-----~~~l~~~r~l~ 152 (494)
..+.++. -.......+...++.++...+.||+|||++++.+.++.+++.+..+ . .++ ...+.... +.
T Consensus 282 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-l~ 358 (451)
T PF00083_consen 282 NAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLA-LF 358 (451)
T ss_pred ccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeee-ec
Confidence 4555555 2222233345556667777999999999999999999888887764 1 111 22222122 22
Q ss_pred HhHhh-hhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH-HHhhccCc
Q psy4871 153 GFSMA-AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL----SYMNYLTYSLIIPIIFT-VTFMFMPE 226 (494)
Q Consensus 153 G~~~g-~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~-~~~~~~~e 226 (494)
.++.+ +..+....+..|.+|.+.|+++.++......++.++++.+...+ +-...+.+.+.++++.. +..+++||
T Consensus 359 ~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 359 FAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence 11212 33466678889999999999999999888888888777765552 31334555555544444 44578999
Q ss_pred ch
Q psy4871 227 SP 228 (494)
Q Consensus 227 sp 228 (494)
+.
T Consensus 439 T~ 440 (451)
T PF00083_consen 439 TK 440 (451)
T ss_pred CC
Confidence 74
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.4e-06 Score=80.67 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCc---------hhHHH
Q psy4871 53 EAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGR---------KWSLL 123 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr---------r~~l~ 123 (494)
++.+.++.+...+....+...+|.+.++ -++.+..+.|++.++..+.+.+..+++|.++||.-+ |..-.
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~--VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKE--VLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH--HhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 4444555555555555566667777754 588999999999999999999999999999998855 22333
Q ss_pred hhHHHHHHHHHHHHHHhh--H-HHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 124 MTGPITTASWIIAMYSRS--V-LGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 124 ~~~~~~~i~~~~~~~a~~--~-~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
++....+++.+..++.++ . ..+...-+..++. |...+....-..+. .+++-+..+++.+....+..+++|.+.+.
T Consensus 338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~-g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~ 415 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLS-GFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGI 415 (466)
T ss_pred HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHc-ccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 444445555555555542 1 1221111112221 22222222223333 45678999999999999999999998876
Q ss_pred h-------hhHHHHHHHHHHHHHHHHHhhcc
Q psy4871 201 L-------SYMNYLTYSLIIPIIFTVTFMFM 224 (494)
Q Consensus 201 ~-------~w~~~f~~~~~~~~~~~~~~~~~ 224 (494)
+ .||++|.+.+++.++..+.+.++
T Consensus 416 ~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 416 IVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 3 79999999999998888666444
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.4e-05 Score=80.48 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhh
Q psy4871 321 PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFN 400 (494)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (494)
.......+..++.++|.++.|.++||+|||+++..++++..++.++.++. .+.+...+.-++.|++.+
T Consensus 119 ~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a------------~~~~~~~~~Rfl~G~~~~ 186 (521)
T KOG0255|consen 119 LVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA------------PNYWMFLIFRFLSGFFGS 186 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh------------CcHHHHHHHHHHHHhhcc
Confidence 35566777888999999999999999999999999999999998777664 355555666666666655
Q ss_pred cccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 401 LGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 401 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
. ...+.+.+..|.++++.|+.+..+ ....+.++.+++.+.+++..
T Consensus 187 ~-~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 187 G-PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred c-hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 4 444566899999999999999999 88888888888888888877
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.8e-05 Score=69.26 Aligned_cols=132 Identities=8% Similarity=-0.045 Sum_probs=98.6
Q ss_pred HHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCcc
Q psy4871 306 IAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYT 384 (494)
Q Consensus 306 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (494)
....|.+.+....+. +++........+..++++..+++.+|+|+|+-++.++.++++++.++.-..... +
T Consensus 33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~---------~ 103 (422)
T COG0738 33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK---------S 103 (422)
T ss_pred hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh---------h
Confidence 334565555555554 677888888889999999999999999999999999999999998875432211 2
Q ss_pred chHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 385 SWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
....+...++.+.+.+. .....+.++..+.|++..+.-+.+...++.+|++++|++.+.+..
T Consensus 104 y~~FL~~lFila~Gi~~-LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 104 YGFFLVALFILASGIGL-LETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHHHhhhHH-HHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 22233333444444333 234455788888898888888999999999999999999999987
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.09 E-value=7e-06 Score=57.81 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=54.9
Q ss_pred HHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHH
Q psy4871 61 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 129 (494)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 129 (494)
|+.....+...|.+|...+ +.|+++.++|.+.++..+...++.+++|.++||+|+++.++....+.
T Consensus 10 f~~f~~~g~~~Pfl~~~~~---~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLK---QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHhhhhHhhh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3334455667788888885 89999999999999999999999999999999999888877765543
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.4e-05 Score=76.61 Aligned_cols=110 Identities=14% Similarity=0.064 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcc
Q psy4871 323 DYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLG 402 (494)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (494)
++......++..++.++.|+++|++|||+.+.++.+...++.++.+... +.+..++.=++.+++.+..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~------------~~~~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP------------SWYQLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHhccchhhh
Confidence 5788889999999999999999999999999999999999999888853 4556677777777777665
Q ss_pred cccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 403 FGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 403 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
....+ .+.+|+.|++.||...++.+....+|..++ ++.+...
T Consensus 160 ~~~~p-iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~ 201 (513)
T KOG0254|consen 160 SVLAP-VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGT 201 (513)
T ss_pred hhcch-hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh
Confidence 55555 899999999999999999988888777776 4444443
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0012 Score=66.12 Aligned_cols=153 Identities=13% Similarity=0.099 Sum_probs=116.9
Q ss_pred cccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh-hCchhHHHhhHHHHHHHHHHHHHHhhH--
Q psy4871 66 SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAMYSRSV-- 142 (494)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~~-- 142 (494)
..++....+..+.. +++.+...+.-..+.+.-......+.+++++|- +||-+++.++.++..++..+..++...
T Consensus 53 ~~g~~~nlv~ylt~---~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~ 129 (571)
T KOG1237|consen 53 FFGLVSNLVTYLTL---ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPA 129 (571)
T ss_pred HhcchhHHHHHHHH---HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555667777774 888888888888888888888899999999996 689999999999988886665543221
Q ss_pred -----------------------HHHHHHHHHHHhHhhhhhhhhhhheecccC---CCC---chhHHHHHHHHHHHHHHH
Q psy4871 143 -----------------------LGLYVMRTLQGFSMAAIYVISPMYLGEISE---TSI---RGTIGTLFQISCHLGILY 193 (494)
Q Consensus 143 -----------------------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~---~~~---r~~~~~~~~~~~~~G~~~ 193 (494)
..++.+.-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|.++
T Consensus 130 l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~ 209 (571)
T KOG1237|consen 130 LLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALL 209 (571)
T ss_pred cCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHH
Confidence 355666677778899999999999999998 222 246778888888999988
Q ss_pred HHHhhhh----hhhHHHHHHHHHHHHHHHHHh
Q psy4871 194 TYVLGSE----LSYMNYLTYSLIIPIIFTVTF 221 (494)
Q Consensus 194 ~~~~~~~----~~w~~~f~~~~~~~~~~~~~~ 221 (494)
+..+..+ .+|.+.|.+..+..++..+++
T Consensus 210 a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 210 AQTVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 8776655 589999988887766665444
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=64.73 Aligned_cols=142 Identities=10% Similarity=-0.064 Sum_probs=97.0
Q ss_pred HHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhh
Q psy4871 297 RAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTI 375 (494)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (494)
...+..+.+..|.|.+-+..+++. +...+.....++..+ .++.|.+.|++|.+.++.++.+...++...+.......
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~- 90 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR- 90 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc-
Confidence 344457888999999998888774 455566666666655 48889999999999999999999999998776654221
Q ss_pred ccccCCCccchHhHHHHHHHHHHhhccc-ccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 376 ELQYEIPYTSWVPFLSISLLGVFFNLGF-GPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
. ...+.|...+..+ ..+.+.++ .........+.+|. .||++.|+.-....+++.+-..+...+.+
T Consensus 91 ---i-~~~~~~~~~~~~~--l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 91 ---I-PSLPVWLMCLFLF--LGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred ---c-CccchHHHHHHHH--HHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 0 0112232222222 22222222 22222344577885 69999999999999999998888877775
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=63.76 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=40.5
Q ss_pred cchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy4871 384 TSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 441 (494)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i 441 (494)
+.+..++.++++++.-+.. ......+.++..++++|..+-.+....-.+|-.+|..+
T Consensus 371 ~d~~~~~~~~l~gltnGy~-~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYL-GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677776665442 33455677888888889888888888888887777765
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0011 Score=63.29 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=79.1
Q ss_pred HHHHHHHHhhhcccchhhHHHhhhcCCCC--CCCCCCchhHHHHH---HHHhHhhhhhchHhhhhhhCchhHHHhh-HHH
Q psy4871 55 HACIAAFTTGMSFAWSAPVLEELLSKESP--IPMSPNEGSWVVAI---IEIGNYLSPIPAGMLVNRIGRKWSLLMT-GPI 128 (494)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~s~---~~~~~~i~~~~~g~l~dr~Grr~~l~~~-~~~ 128 (494)
++.+..++.|.-.+.....+|.+.+ + -+.+.+|.|...-+ |++=..-+.++=.....|+||||..++= -.+
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~---~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l 80 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQ---SMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYL 80 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhc---cccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence 4556677888888887666787774 4 46777777653211 1222222222223344489999876542 222
Q ss_pred HHHHHHHHHHHh------------------------hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHH
Q psy4871 129 TTASWIIAMYSR------------------------SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQ 184 (494)
Q Consensus 129 ~~i~~~~~~~a~------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~ 184 (494)
.++..+..+..- +...+....++.=+-.+.--.+.-.+.-.+.++++++.+.....
T Consensus 81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt 160 (544)
T PF13000_consen 81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT 160 (544)
T ss_pred HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence 233222222111 01122233333333334444455556666778888999999998
Q ss_pred HHHHHHHHHHHHhh
Q psy4871 185 ISCHLGILYTYVLG 198 (494)
Q Consensus 185 ~~~~~G~~~~~~~~ 198 (494)
.+.+.|.+++..+-
T Consensus 161 vG~~~Gyfls~tvF 174 (544)
T PF13000_consen 161 VGQTAGYFLSFTVF 174 (544)
T ss_pred hHhhhhHHHHHHHH
Confidence 88888888876654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0015 Score=62.69 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=83.4
Q ss_pred hHHHhhHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCC---chhHHHHHHHHH
Q psy4871 120 WSLLMTGPITTASWIIAMYSR---------SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI---RGTIGTLFQISC 187 (494)
Q Consensus 120 ~~l~~~~~~~~i~~~~~~~a~---------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~ 187 (494)
++++++.++..+|.++..++. +.+.++++-++.++|.|+.=|...++.+|.+++++ |.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 578889999999999866543 23678999999999999999999999999998763 566778889999
Q ss_pred HHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhc
Q psy4871 188 HLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMF 223 (494)
Q Consensus 188 ~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~ 223 (494)
++|.+++..+..+ .+|.+.|.+.++..++..+.++.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999888777 47999999988887777665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00032 Score=68.21 Aligned_cols=117 Identities=9% Similarity=0.071 Sum_probs=106.3
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchH-hhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAG-MLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g-~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
.+++++.+.+...+...+...+++++.. .+...+|-|+++..|++...+.....+++++.|+++....+.++. +...|
T Consensus 271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~~p 349 (463)
T KOG2816|consen 271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIVFP 349 (463)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cchhH
Confidence 7899999999999998888888888777 788889999999999999999999999999999999999988876 66779
Q ss_pred hhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 162 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 162 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
...+.++.+..++++|+..++.....++..+++|.+-+.
T Consensus 350 a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~ 388 (463)
T KOG2816|consen 350 AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGN 388 (463)
T ss_pred HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHH
Confidence 999999999999999999999999999999888877654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=69.92 Aligned_cols=113 Identities=13% Similarity=0.151 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccc-CchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcc
Q psy4871 324 YISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLG 402 (494)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (494)
.....++...-+..+++||++||+ |+|+.+..+.+++.++.++++... ........+.+.+.+.+.+.
T Consensus 65 ~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~----------~~~~~gl~i~L~~I~iG~Gl- 133 (498)
T COG3104 65 GLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS----------VSGPGGLYIGLALIIVGTGL- 133 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc----------cccccHHHHHHHHHHhcccc-
Confidence 333444444447788899999995 999999999999999999887741 01233445555555555544
Q ss_pred cccchhhhhcccCCcch--hhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 403 FGPLFTPLLSEYFSSNM--KAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 403 ~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
+-|....++.|++|++. |..+.++..+..++|++++|.+.+++.+
T Consensus 134 ~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~ 180 (498)
T COG3104 134 FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI 180 (498)
T ss_pred ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence 44556588999997753 7778888899999999999999999988
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.029 Score=55.07 Aligned_cols=148 Identities=10% Similarity=0.077 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHH-hHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 50 FGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEI-GNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
+.-.+.+++..|+..++++..-..-+.+.- . ...+..+..+-....+ +..+......+++++++|.+++-+....
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~lR~~KD~lvv---t-~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~ 98 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTILRDLKDTLVV---T-AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP 98 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeEEE---e-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333444555555555555433332211110 0 1245556666555555 4455677889999999999998887777
Q ss_pred HHHHHHHHHHH--h-------h----------------------HHHHHHHHHHHHhHhhhhhh-hhhhheecccCCCCc
Q psy4871 129 TTASWIIAMYS--R-------S----------------------VLGLYVMRTLQGFSMAAIYV-ISPMYLGEISETSIR 176 (494)
Q Consensus 129 ~~i~~~~~~~a--~-------~----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r 176 (494)
+.....+.++. | + .|.+.+.-++.-+-.....+ .-..+..|.++.++-
T Consensus 99 F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eA 178 (491)
T PF03219_consen 99 FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEA 178 (491)
T ss_pred HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 77766666552 1 0 12222222222222222222 347788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q psy4871 177 GTIGTLFQISCHLGILYTYVLGSEL 201 (494)
Q Consensus 177 ~~~~~~~~~~~~~G~~~~~~~~~~~ 201 (494)
.|..++++.+.++|.++++.+..++
T Consensus 179 KRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 179 KRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.027 Score=52.96 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHh---hhh------hhhHHHHHHHH
Q psy4871 141 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVL---GSE------LSYMNYLTYSL 211 (494)
Q Consensus 141 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~---~~~------~~w~~~f~~~~ 211 (494)
.+...++.-.+.|++.|..........++. |++.-.-. ..+.+++..+..++ ... -+-...|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqav----m~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAV----MSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHH----HhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 456677778888888888877777776654 44432221 12222222222211 111 13334566666
Q ss_pred HHHHHHHHHhhccCcchh
Q psy4871 212 IIPIIFTVTFMFMPESPY 229 (494)
Q Consensus 212 ~~~~~~~~~~~~~~esp~ 229 (494)
++.+++.+....+|..|-
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 777777777677777663
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0015 Score=64.14 Aligned_cols=161 Identities=11% Similarity=-0.002 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh----hCchhHHHhhHHH
Q psy4871 53 EAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR----IGRKWSLLMTGPI 128 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~~~~~~ 128 (494)
++..++..++.....+....-+|.+.++ ..+.+..+.+.+...+.++.+++.+++|+++|| ..+|........+
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~--~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKS--NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHc--CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344455555555556566667777752 356899999999999999999999999999999 6777777776666
Q ss_pred HHHHH-HHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCc-hhHHHHHHHHHHHHHHHHHHhh-----hhh
Q psy4871 129 TTASW-IIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR-GTIGTLFQISCHLGILYTYVLG-----SEL 201 (494)
Q Consensus 129 ~~i~~-~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r-~~~~~~~~~~~~~G~~~~~~~~-----~~~ 201 (494)
+.+.. +.....++......+-+..+.+.+...+.......+...++.| -...+....+.+.+.++++.+- +.+
T Consensus 353 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y 432 (495)
T KOG2533|consen 353 YAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRY 432 (495)
T ss_pred HHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcch
Confidence 66555 4444443344444444444555666777778888887765543 3334444445555555444443 225
Q ss_pred hhHHHHHHHHHHHH
Q psy4871 202 SYMNYLTYSLIIPI 215 (494)
Q Consensus 202 ~w~~~f~~~~~~~~ 215 (494)
.|-+.|......++
T Consensus 433 ~~~~~f~~~~~~~~ 446 (495)
T KOG2533|consen 433 GWGAVFYMLVAACV 446 (495)
T ss_pred hhhhHHHHHHHHHH
Confidence 77777754444433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0028 Score=51.53 Aligned_cols=110 Identities=12% Similarity=0.135 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcc
Q psy4871 323 DYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLG 402 (494)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (494)
.....+......+..++.+.+.+++|.|+.+.++.+...+-...... .+.+..+....+.|++.+..
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-------------~~~~~l~~~s~l~G~~~a~l 106 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-------------PNSYTLYPASALLGFGAALL 106 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHhhhhHHh
Confidence 34455666677788888999999999999999888877765544322 24566677777888888877
Q ss_pred cccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 403 FGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 403 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
+.+.. .++.+...++.+++..++.-.+...+.++|..+.-.+.
T Consensus 107 W~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 107 WTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655 77888888889999999998888888888877655543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00068 Score=47.74 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=49.8
Q ss_pred cchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHH
Q psy4871 300 TGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAG 359 (494)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 359 (494)
++...+.-|.+.++++.|++. +.+....+..+..+++.++.|.++||.++++........
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 345667778899999999885 788888899999999999999999999998876655443
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=63.80 Aligned_cols=116 Identities=9% Similarity=-0.001 Sum_probs=79.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhcccCc-hhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHh
Q psy4871 321 PSDYISILFAIILLVSIFPSTYYIDRAGR-RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFF 399 (494)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (494)
--+++.....++..++++..|+...|.+. |+.++.+.+++.++.+++......+ ....+..++.-++.|++
T Consensus 72 ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-------~~~~y~mL~~R~l~Gvg- 143 (488)
T KOG2325|consen 72 FFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-------NGVKYLMLVARILTGVG- 143 (488)
T ss_pred hhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHcCcC-
Confidence 35566667888899999999999999885 7778889999999988885554333 12333333333333333
Q ss_pred hcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhch
Q psy4871 400 NLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLM 445 (494)
Q Consensus 400 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 445 (494)
.+.....-.|+++..-.+.|.++.+..+....+|.++||.+-..+
T Consensus 144 -~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 144 -VGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred -cccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 334456667888877777888888888776677777766554433
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0071 Score=52.87 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHHHHHHHHHH--HHhhh-h------hhhHHHHHHHHHHHHHHHHHhhcc
Q psy4871 174 SIRGTIGTLFQISCHLGILYT--YVLGS-E------LSYMNYLTYSLIIPIIFTVTFMFM 224 (494)
Q Consensus 174 ~~r~~~~~~~~~~~~~G~~~~--~~~~~-~------~~w~~~f~~~~~~~~~~~~~~~~~ 224 (494)
|+|+....+...++++|.++. |++.. . -+|++.+.+.+++.++-+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888888888765 33332 1 279999999888877766665444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0039 Score=58.92 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=81.3
Q ss_pred CCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH--H---HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4871 87 SPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP--I---TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 87 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~--~---~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
..++..+....|.+|-.++.--...+ |+ |++.+.+.+ + ..+.....-+.++.|..++.-+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45677888888888877764432222 33 333333222 1 222222233457889999999999999999999
Q ss_pred hhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy4871 162 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 201 (494)
Q Consensus 162 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 201 (494)
-....+.|-.++++|-.+++..+.+-++|.+++.+++-.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.017 Score=53.33 Aligned_cols=127 Identities=13% Similarity=-0.001 Sum_probs=75.9
Q ss_pred hHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccch
Q psy4871 308 YANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSW 386 (494)
Q Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (494)
|.-.++++.|++. +.........+...+...+.|.+.||+|||+..+..+++.+++++.-.. ++.+
T Consensus 56 Y~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-------------~~~~ 122 (354)
T PF05631_consen 56 YLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-------------SNYP 122 (354)
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------------cccH
Confidence 4444456667764 5666677777778888899999999999999999888888888764322 2444
Q ss_pred HhHHHHHHHHHHhhcccccchhhhhccc----CCcchhhHHHHHHH-HHHHHHHHHHHHhhhchhh
Q psy4871 387 VPFLSISLLGVFFNLGFGPLFTPLLSEY----FSSNMKAVSCAVIN-ILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~r~~~~g~~~-~~~~~~~~i~~~i~~~l~~ 447 (494)
..++.=++.|+..++.+.+--.=++.|. +|++..+...+... ..+.+..+++..+...+.+
T Consensus 123 ~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~ 188 (354)
T PF05631_consen 123 VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD 188 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 4555555555555443332211123333 45555555555444 2333444444444444444
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.028 Score=54.26 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=77.3
Q ss_pred HHhHhhhhhchHhhh---hhhCchhHHHhhHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHHhHhh
Q psy4871 99 EIGNYLSPIPAGMLV---NRIGRKWSLLMTGPITTASWIIAMYSR------------------SVLGLYVMRTLQGFSMA 157 (494)
Q Consensus 99 ~~~~~i~~~~~g~l~---dr~Grr~~l~~~~~~~~i~~~~~~~a~------------------~~~~l~~~r~l~G~~~g 157 (494)
.+|..++..+.+.+. +++||++++.++.++..++.++.-... ++...++.-+++|++.+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~ 368 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA 368 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH
Confidence 344445555566666 468999999999999888888776531 35677888899999999
Q ss_pred hhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy4871 158 AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 200 (494)
Q Consensus 158 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 200 (494)
......+.++...+ +++|..+.++...-..++..++.+....
T Consensus 369 ~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 369 CFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999 5568888888888777777776655544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.046 Score=54.53 Aligned_cols=134 Identities=14% Similarity=0.046 Sum_probs=73.3
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH--H-HHHHHHHHHHhh-----HHHHHHHHHHHHh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI--T-TASWIIAMYSRS-----VLGLYVMRTLQGF 154 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~--~-~i~~~~~~~a~~-----~~~l~~~r~l~G~ 154 (494)
-+|-+..+.+.+.+++.+|.++|+.+.+++.++.-|+... +-+.+ . +++..+...... ...++..-++.|+
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 122 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL 122 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777889999999999999999998887443333221 11111 1 111111111111 1223344566788
Q ss_pred HhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHH
Q psy4871 155 SMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSYMNYLTYSLIIPIIFT 218 (494)
Q Consensus 155 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~~w~~~f~~~~~~~~~~~ 218 (494)
..|+..|....+..+... ++-+...+-......+|.++|.++..+ +|-....++.+.+.+++.
T Consensus 123 l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 123 LIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 888888887777655432 123444555555666666666655544 444333344444443333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.019 Score=55.29 Aligned_cols=131 Identities=16% Similarity=0.048 Sum_probs=97.4
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHH---h-------hHHHHHHHHHHH
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS---R-------SVLGLYVMRTLQ 152 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a---~-------~~~~l~~~r~l~ 152 (494)
.-|+++..+|..-+...+....+.+.+.++.+|+|..+.=++++....++..++..+ + +...++.+-.+.
T Consensus 287 ~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~S 366 (432)
T PF06963_consen 287 SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALS 366 (432)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHH
Confidence 449999999999999999999999999999999999998888887776665555432 1 233334444444
Q ss_pred HhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy4871 153 GFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLII 213 (494)
Q Consensus 153 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~w~~~f~~~~~~ 213 (494)
=+|.=+.-....-++.|..|+++||...+......++--++...++-.++..--|.....+
T Consensus 367 R~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~lv~i 427 (432)
T PF06963_consen 367 RIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGWLVLI 427 (432)
T ss_pred HHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcChHHHh
Confidence 4454455567788899999999999999999988888888777776555444444444333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.037 Score=52.45 Aligned_cols=135 Identities=13% Similarity=0.185 Sum_probs=90.6
Q ss_pred HhHHHhHHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCC
Q psy4871 303 QSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIP 382 (494)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (494)
..+..+...++. ....+.+...++.+..++..+.+-|+.||+|-|....++..+.+++..+=....... .+
T Consensus 65 a~i~n~~~~~Yg---s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~------v~ 135 (480)
T KOG2563|consen 65 APINNYVNSFYG---SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPF------VP 135 (480)
T ss_pred hhHHHHHHHHhc---chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcc------cc
Confidence 344444444443 122566888899999999999999999999999999999998888876544432110 01
Q ss_pred ccch--HhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 383 YTSW--VPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 383 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
+..+ +....-.+.+...-... .++.-+..--+|+++|+++..+..+.+.+|.+++..+-+.+..
T Consensus 136 ~~f~~~l~~~Gq~iaa~Aq~Fim-~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 136 PLFRRPLTHTGQSIAAAAQPFIL-GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred ccchhhhhHHhHHHHHHhhhHhh-ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 2333 33334444433332211 1222334445899999999999999999999999988888876
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0099 Score=58.08 Aligned_cols=142 Identities=12% Similarity=0.103 Sum_probs=104.9
Q ss_pred CCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHhH
Q psy4871 86 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY----------SRSVLGLYVMRTLQGFS 155 (494)
Q Consensus 86 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----------a~~~~~l~~~r~l~G~~ 155 (494)
.++...|.+..+..++..++..++....-+..-|+++.++.++.++..+.... .++.+..+..-++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 78888899998889999999999988888888888888887777766554221 12233344455677777
Q ss_pred hhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh------------hhHHHHHHHHHHHHHHHHHhhc
Q psy4871 156 MAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL------------SYMNYLTYSLIIPIIFTVTFMF 223 (494)
Q Consensus 156 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~------------~w~~~f~~~~~~~~~~~~~~~~ 223 (494)
.+..+-....+++|.+|+...|...++.....++|..++..++..+ +-.+..+++.+..++...+..+
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l 411 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL 411 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888999999999999999999999999998888887663 1234455555555555555666
Q ss_pred cCcc
Q psy4871 224 MPES 227 (494)
Q Consensus 224 ~~es 227 (494)
+|+.
T Consensus 412 Lp~~ 415 (433)
T PF03092_consen 412 LPPQ 415 (433)
T ss_pred cCCC
Confidence 7753
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.18 Score=45.73 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=68.7
Q ss_pred HHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCC--CC
Q psy4871 98 IEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISET--SI 175 (494)
Q Consensus 98 ~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~ 175 (494)
..+..+..+++.+.+..++|.|+++.++...+...-..- +-+.+..++.+-.+.|++.+..+..--+|+++.... +.
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 344555666666799999999999998877766543222 336788899999999999999999888888876543 22
Q ss_pred c-------------hhHHHHHHHHHHHHHHHHHHh
Q psy4871 176 R-------------GTIGTLFQISCHLGILYTYVL 197 (494)
Q Consensus 176 r-------------~~~~~~~~~~~~~G~~~~~~~ 197 (494)
| |....+++++.-.|.+++..+
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3 334445555555565554443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.7 Score=42.13 Aligned_cols=149 Identities=9% Similarity=0.067 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHH-hHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEI-GNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
.+......++..++.+++++..-+.-+.+.- -...+..+.++-+...+ ++.+..++.+++.+++-|.+++-..+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv----~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~ 100 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLRSLKDSLVV----TRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG 100 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhheEe----ecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4444445555555556665544443222221 12355667888888888 677888999999999999999988888
Q ss_pred HHHHHHHHHHHHh---------h----------H-------------HHHHHHHHHHHhHhhhhhh-hhhhheecccCCC
Q psy4871 128 ITTASWIIAMYSR---------S----------V-------------LGLYVMRTLQGFSMAAIYV-ISPMYLGEISETS 174 (494)
Q Consensus 128 ~~~i~~~~~~~a~---------~----------~-------------~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~ 174 (494)
.+....+++++.= + . |...+.-.+.=+=...... .-.....|.+..+
T Consensus 101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ 180 (509)
T COG3202 101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE 180 (509)
T ss_pred HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 8888777777630 1 0 2222222222121122222 3456678888888
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy4871 175 IRGTIGTLFQISCHLGILYTYVLGSEL 201 (494)
Q Consensus 175 ~r~~~~~~~~~~~~~G~~~~~~~~~~~ 201 (494)
+-.|..++++.+.+++.++++.+..++
T Consensus 181 eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 181 EAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988887664
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0021 Score=59.64 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhccc-CchhHHHHhhHHHHHHHHHHHHHHHhhhcccc--CCCccchHhHHHHHHHHHHhhc
Q psy4871 325 ISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCSLFSFIAGLYYYVTIELQY--EIPYTSWVPFLSISLLGVFFNL 401 (494)
Q Consensus 325 ~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 401 (494)
....+.++.++|+.+..+..-+. .+|.+. ...+.=.+..-++......+ +... ..-.+.+..++.++++++.-+.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p-~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQP-RPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhc-ccccCCCcccchHHHHHHHHHHHHccch
Confidence 45568888999999888753221 233333 22222222111111111110 0000 0012445555566666665443
Q ss_pred ccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4871 402 GFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 442 (494)
Q Consensus 402 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~ 442 (494)
.......+.++..++++|..+-.+....-.+|-.+|..+.
T Consensus 265 -l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 265 -LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ---HHHH----------------------------------
T ss_pred -hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345557788888888888887777777777777776654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.18 Score=51.81 Aligned_cols=127 Identities=11% Similarity=0.047 Sum_probs=77.5
Q ss_pred hcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcc-cCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHH
Q psy4871 315 SSETFL-PSDYISILFAIILLVSIFPSTYYIDR-AGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSI 392 (494)
Q Consensus 315 ~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (494)
..+.+. .+......+....-+..+++|++.|+ +|+++.+..+.++..++.+++.+..... .. ........++.+
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~---~~-~~~~~~~~l~gL 92 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPS---SG-HPLHDLLDLLGL 92 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcc---cc-cchHHHHHHHHH
Confidence 345443 23333333444444667778888886 6999999999999888887776532110 00 000111233334
Q ss_pred HHHHHHhhcccccchhhhhcccCCcc---hhhHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4871 393 SLLGVFFNLGFGPLFTPLLSEYFSSN---MKAVSCAVINILCTTLGLISYKLFFLMD 446 (494)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 446 (494)
.+..+|.+. .-|...+...+.++++ .+.....+.....++|+++++.+.+++.
T Consensus 93 aLia~G~Gg-iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~ 148 (654)
T TIGR00926 93 ALIALGTGG-IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR 148 (654)
T ss_pred HHHHhhccc-cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333 3344447778877653 3677888888899999999988888775
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.09 Score=37.51 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=57.6
Q ss_pred hHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHH
Q psy4871 304 SIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLY 370 (494)
Q Consensus 304 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (494)
.+.-.+|.+.++.+++. +.+++...+.++.++|++...++.++.++++.+..+.+...+..+.+++.
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788888888886 78899999999999999999999999888888999998888888887775
|
Note that many members are hypothetical proteins. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.5 Score=46.35 Aligned_cols=111 Identities=10% Similarity=0.019 Sum_probs=75.2
Q ss_pred HhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCC----------Cc----------cchHhHHHHHH
Q psy4871 335 VSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEI----------PY----------TSWVPFLSISL 394 (494)
Q Consensus 335 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~----------~~~~~~~~~~~ 394 (494)
+..++.+++++|++|++++...........+++++..... .+...+ .. ..|.. ..+.+
T Consensus 59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~-~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~-~~FYv 136 (472)
T TIGR00769 59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPL-SDLLHPTALADKLLSLLPPGFMGFIAILRIWSF-ALFYV 136 (472)
T ss_pred HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcc-hhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhH-HHHHH
Confidence 3367789999999999988887777777776666654322 000000 00 02221 12222
Q ss_pred HHHHhhccccc-chhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 395 LGVFFNLGFGP-LFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 395 ~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
..-.++....+ +.|.+++|++..++..+-.++....+++|.++++.+..++.+
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333 778999999999999999999999999999999999888774
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.27 Score=45.14 Aligned_cols=131 Identities=15% Similarity=0.077 Sum_probs=78.8
Q ss_pred HHhHHHHHHhcCCCc---chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCC
Q psy4871 306 IAYANTIFASSETFL---PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIP 382 (494)
Q Consensus 306 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (494)
....+.+..+.+... ..........+...++.++.|.+.||.|||+.+..+.....++.+...+.. .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----------~ 91 (338)
T COG0477 22 SPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP----------N 91 (338)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc----------c
Confidence 334454444443322 245666667777778889999999999999777766655333333333221 0
Q ss_pred ccchHhHHHHHHHHHHhhcccccchhhhhcccCCc-chhhHHHHHHHH-HHHHHHHHHHHhhhchhh
Q psy4871 383 YTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS-NMKAVSCAVINI-LCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~-~~~~~~~i~~~i~~~l~~ 447 (494)
...+...+.....+.+.+ ...+...++..|..|. +.|+...+.... ...++..+++.+.+.+..
T Consensus 92 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 92 VGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred chHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222333333333333 2345556888899887 668888888887 577777888766665553
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.042 Score=52.15 Aligned_cols=159 Identities=19% Similarity=0.105 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcc----cCchhH-HHHhhH
Q psy4871 285 KAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDR----AGRRVL-FLVSSA 358 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~-~~~~~~ 358 (494)
..++....+.+..+++ ...-..|.+.++++.|.+. -.+..-....+.+++..++.|..+|| +||||. +..+..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 3444444444444444 4566778888888888663 34445555667788889999999996 577665 444555
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCccc--hH---hHHHHHHHHHHhhcccccchhhhhcccCCcchhhH-HHHHHHHHHH
Q psy4871 359 GCSLFSFIAGLYYYVTIELQYEIPYTS--WV---PFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAV-SCAVINILCT 432 (494)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~-~~g~~~~~~~ 432 (494)
...++++++++..........+..... +. .++.+.++-+.......|.- ++..++..++.+.+ +++....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHH
Confidence 566666666655433211111111111 11 11222222223333344554 78889888777777 9999999999
Q ss_pred HHHHHHHHhhhch
Q psy4871 433 TLGLISYKLFFLM 445 (494)
Q Consensus 433 ~~~~i~~~i~~~l 445 (494)
+|+.+|-.+.++.
T Consensus 190 vGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 190 VGNVLGYALGSYL 202 (498)
T ss_pred hcceeeeeccccc
Confidence 9998887766543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.2 Score=42.69 Aligned_cols=153 Identities=9% Similarity=0.056 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHccchHhHHHhHHHHHHh--cCCCc-ch-hHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHH
Q psy4871 285 KAFVFMAFLAVFRAFTGVQSIIAYANTIFAS--SETFL-PS-DYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGC 360 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 360 (494)
+..++.+...++..+- ..--|+..++.+ .+++. +. ..+.-+..-..++..+....+.|.++.|++++.+.+..
T Consensus 5 ~~~~llc~~gf~~~fr---PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~ 81 (412)
T PF01770_consen 5 KITLLLCLFGFFKEFR---PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSY 81 (412)
T ss_pred HHHHHHHHHHHHHhcC---CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3445555555554432 222233444433 45442 11 12222233445566667788999999999999998888
Q ss_pred HHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4871 361 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYK 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~ 440 (494)
.+...++.+. .+.+..-+.-+.+|...+. -...++++-...|++.--++.+.......+|.+++..
T Consensus 82 i~t~~lll~~------------~sv~~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 82 IITWLLLLFG------------TSVLAMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSL 147 (412)
T ss_pred HHHHHHHHHH------------CcHHHHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877776653 3444555556666655443 2234466767778888888999999988888888888
Q ss_pred hhhchhhhcCCCHH
Q psy4871 441 LFFLMDKHIGKTFN 454 (494)
Q Consensus 441 i~~~l~~~~~~~~~ 454 (494)
+...+....+.+..
T Consensus 148 lgQllvs~~~~sy~ 161 (412)
T PF01770_consen 148 LGQLLVSFGGVSYF 161 (412)
T ss_pred HHHHHHHhcCCCHH
Confidence 88888775554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.66 Score=45.29 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=72.6
Q ss_pred hHHHHHHHHhHhhhhhchHhhhhhhCch-hHHHhhHHH---HHHHHHHHHHH---------hhHHHHHHHHHHHHhHhhh
Q psy4871 92 SWVVAIIEIGNYLSPIPAGMLVNRIGRK-WSLLMTGPI---TTASWIIAMYS---------RSVLGLYVMRTLQGFSMAA 158 (494)
Q Consensus 92 g~~~s~~~~~~~i~~~~~g~l~dr~Grr-~~l~~~~~~---~~i~~~~~~~a---------~~~~~l~~~r~l~G~~~g~ 158 (494)
-.+..++.+|-.+|..+..+.. .-++| +.+.+..+. +....++|..- ++-+..++.-++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4556677777777776554321 11222 123332222 33333334322 3556777889999999999
Q ss_pred hhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy4871 159 IYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG 198 (494)
Q Consensus 159 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 198 (494)
....++.+..+..++++|..+..+...+..+|..+|..++
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988899988888775
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.0094 Score=59.65 Aligned_cols=139 Identities=17% Similarity=0.098 Sum_probs=1.0
Q ss_pred hHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccC------
Q psy4871 308 YANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE------ 380 (494)
Q Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 380 (494)
-++.+-++.+++. +.+.+...+-++.++..++..++.+|-.|-+.+..+.++++++.+++.+-........++
T Consensus 25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~ 104 (539)
T PF03137_consen 25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSN 104 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccc
Confidence 3344444555554 677777888888889999999999888888888889999999888876543222110000
Q ss_pred ----------------------------CCccc----hHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHH
Q psy4871 381 ----------------------------IPYTS----WVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVIN 428 (494)
Q Consensus 381 ----------------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 428 (494)
..... +..++..++.|++... ..++..+|+-|..+++.-+...|+..
T Consensus 105 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~p-l~tLG~tYiDDnv~~~~splYiGi~~ 183 (539)
T PF03137_consen 105 GNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATP-LYTLGITYIDDNVSKKNSPLYIGILY 183 (539)
T ss_dssp -----------------------------------------------SSS------------------------------
T ss_pred cccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccC-CccceeeeeccccccccCccchhhhh
Confidence 01111 1222222333333222 34566689999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchhh
Q psy4871 429 ILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 429 ~~~~~~~~i~~~i~~~l~~ 447 (494)
+...+|.++|-.+.+...+
T Consensus 184 ~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 184 AMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp -------------------
T ss_pred HHhhccHHHHHHHHHHHHh
Confidence 9999999998888887776
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.22 Score=44.81 Aligned_cols=130 Identities=14% Similarity=0.102 Sum_probs=74.7
Q ss_pred hHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheeccc
Q psy4871 92 SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEIS 171 (494)
Q Consensus 92 g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 171 (494)
|.+.-.-.+...+..+.+....||+---.-..+..++.+.+..+.+++++.+.=+.+-.+..++.|.....-..+-+. +
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-Y 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-C
Confidence 444444445555566666777888654444455667778888888999999988888888888777665444433322 2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHH----hhhh--hhhHHHHHHHHHHHHHHHHHhhccCc
Q psy4871 172 ETSIRGTIGTLFQISCHLGILYTYV----LGSE--LSYMNYLTYSLIIPIIFTVTFMFMPE 226 (494)
Q Consensus 172 ~~~~r~~~~~~~~~~~~~G~~~~~~----~~~~--~~w~~~f~~~~~~~~~~~~~~~~~~e 226 (494)
++ ...+.++.+.+.+.++|.. +..+ ++-|....+...+.++.+...+++-+
T Consensus 144 ~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~ 200 (409)
T KOG3880|consen 144 PS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLK 200 (409)
T ss_pred CC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeC
Confidence 22 2233333333333333322 2222 35566667766666655555544433
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.23 Score=44.65 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=83.4
Q ss_pred CCCCCC-CchhHHHHHHHHhHhhhhhchHhhhhh-hCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhh
Q psy4871 83 PIPMSP-NEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIY 160 (494)
Q Consensus 83 ~~~~s~-~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~ 160 (494)
.+..+. .|.-|....|.+|..+..-..-..--+ .---.++..-.+++.+...+..+.++++..++.-+.-|+-.|..+
T Consensus 281 g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasY 360 (409)
T KOG3880|consen 281 GFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASY 360 (409)
T ss_pred CCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHH
Confidence 444443 457888888888876654322211111 001122233344455555566677899999999999999889999
Q ss_pred hhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy4871 161 VISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 201 (494)
Q Consensus 161 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 201 (494)
+-..--+.+-.++++|-.+++....+-.+|..++.+++-.+
T Consensus 361 VNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 361 VNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 88888888888889999999999999999999998887554
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.093 Score=48.73 Aligned_cols=106 Identities=13% Similarity=0.236 Sum_probs=3.9
Q ss_pred HHHHHHHHhHhhhhhchHhhhhhh-CchhHHHhh--HHHHHHHHHHHH----------HHhhHHHHHHHHHHHHhHhhhh
Q psy4871 93 WVVAIIEIGNYLSPIPAGMLVNRI-GRKWSLLMT--GPITTASWIIAM----------YSRSVLGLYVMRTLQGFSMAAI 159 (494)
Q Consensus 93 ~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~--~~~~~i~~~~~~----------~a~~~~~l~~~r~l~G~~~g~~ 159 (494)
.+..++.++-.+|..+.++.-=+- .+|++.+.+ =+++....++|. +.+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 356678888888888777642111 244433321 122222222331 2235577788899999999999
Q ss_pred hhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy4871 160 YVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG 198 (494)
Q Consensus 160 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 198 (494)
...++.+..+..++++|..+..+...+..+|..+|..++
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888888888887765
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=87.19 E-value=21 Score=35.57 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=73.2
Q ss_pred HHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCc--------------------cchHhHHH
Q psy4871 332 ILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPY--------------------TSWVPFLS 391 (494)
Q Consensus 332 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 391 (494)
+.++...+-.++++++++.++.-..........+++++..... .+-..++. ..|... .
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~-~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~s-l 148 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPN-RDILHPDAFADKLLAILPPGFKGFIAMFRNWTFS-L 148 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHH-H
Confidence 3445566678899999999988777777766666666654321 00000000 011111 1
Q ss_pred HHHHHHHhhcc-cccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 392 ISLLGVFFNLG-FGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 392 ~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
..+..=.++.. ..-+.|.+++|..+.++..+-.++.....++|.+++..+...+.+
T Consensus 149 fYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 149 FYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222 223568999999999999999999999999999999998888876
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.49 E-value=9.9 Score=38.23 Aligned_cols=28 Identities=11% Similarity=-0.121 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 420 KAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 420 r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
-+...|-......+|+++|+.+++.+.-
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 3566777777788888888877776655
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.46 E-value=23 Score=33.03 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=59.0
Q ss_pred CCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHH----H-HHHH----hhHHHHHHHHHHHHhH
Q psy4871 85 PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI----I-AMYS----RSVLGLYVMRTLQGFS 155 (494)
Q Consensus 85 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~----~-~~~a----~~~~~l~~~r~l~G~~ 155 (494)
|-.--|.+.+.+.|..++.+|+...-++.|.--.-+.+..-.++..++.+ + ..|+ ++.+.+++.-++.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 44667889999999999999999988887754333222222222222211 1 1222 4678888999999999
Q ss_pred hhhhhhhhhhheec
Q psy4871 156 MAAIYVISPMYLGE 169 (494)
Q Consensus 156 ~g~~~~~~~~~i~e 169 (494)
.|.-.|..+.++..
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 99999999988876
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=85.43 E-value=3.1 Score=42.83 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=89.7
Q ss_pred HhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccC------------
Q psy4871 314 ASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE------------ 380 (494)
Q Consensus 314 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 380 (494)
+..+.+. +++.+...+-++.++...+..+...|..|-+.+-.+.++++++.++..+-........++
T Consensus 125 rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~ 204 (735)
T KOG3626|consen 125 RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPS 204 (735)
T ss_pred hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCc
Confidence 3444443 556666667778888888888999999998999999999999988877643221100000
Q ss_pred ---------------------C---Cccc---h-HhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHH
Q psy4871 381 ---------------------I---PYTS---W-VPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCT 432 (494)
Q Consensus 381 ---------------------~---~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 432 (494)
. .... | ..+...++.|++-.. ..++..+|+-|...++.-....|+..++..
T Consensus 205 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp-i~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 205 SSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP-IFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred cccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC-CccCCCccccccccccCCcHHHHHHHHHHH
Confidence 0 0111 1 122223333333322 345566889999999999999999999999
Q ss_pred HHHHHHHHhhhchhh
Q psy4871 433 TLGLISYKLFFLMDK 447 (494)
Q Consensus 433 ~~~~i~~~i~~~l~~ 447 (494)
+|.++|-.+.+.+..
T Consensus 284 lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLK 298 (735)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999988888877
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=81.92 E-value=50 Score=31.72 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=27.3
Q ss_pred HHHHHHHHHccchHhHHHhHHHHHHhcCCCcchhHHHHHHHHHHHHhhhhhhhhhccc
Q psy4871 290 MAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRA 347 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 347 (494)
.+++.........+.+.+-.+++.+..-....+......+.+.+.+..++...+--+.
T Consensus 22 i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~ 79 (406)
T KOG1479|consen 22 IFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFL 79 (406)
T ss_pred HHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445666666666665542222334444445555554444444444443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=81.89 E-value=37 Score=30.32 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=56.6
Q ss_pred hHHHHHHHHhHhhhhhchHhhhhh-hCchhHHH----hhHHHHHHHHHHHHH-H----hhHHHHHHHHHHHHhHhhhhhh
Q psy4871 92 SWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLL----MTGPITTASWIIAMY-S----RSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 92 g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~----~~~~~~~i~~~~~~~-a----~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
....-++..|..+|.+..|..... +.||+.+. .+.++..+..+.... . .++..+++.-|+.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 333455666777887888887764 45555444 233444444333211 1 1466788888888877544444
Q ss_pred hhhhheecccCCCCchhHHHHHHHHHHHHHHHH
Q psy4871 162 ISPMYLGEISETSIRGTIGTLFQISCHLGILYT 194 (494)
Q Consensus 162 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~ 194 (494)
+... +..-++..++-+..-.++..+++|.++-
T Consensus 224 ViL~-lPhEyK~~~pk~ig~~Fg~iWGfGY~~y 255 (267)
T PF07672_consen 224 VILN-LPHEYKGYNPKKIGIQFGLIWGFGYIFY 255 (267)
T ss_pred HHhc-ChhhhcCCCcceehhHHHHHHHHHHHHH
Confidence 4333 3333444444445555666777776653
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.37 E-value=30 Score=33.95 Aligned_cols=115 Identities=12% Similarity=0.125 Sum_probs=76.4
Q ss_pred HHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhc-cccC----------CC-c--------cchHhHHH
Q psy4871 332 ILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIE-LQYE----------IP-Y--------TSWVPFLS 391 (494)
Q Consensus 332 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~-~--------~~~~~~~~ 391 (494)
+.++..++..++.+++.+.++.-..+.......+++++..+...+ .+.| .+ . +.|.. ..
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~-s~ 152 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSY-SL 152 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHH-HH
Confidence 456777788888999999988887777777777777765542110 0000 01 1 01222 22
Q ss_pred HHHHHHHhh-cccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 392 ISLLGVFFN-LGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 392 ~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
..++.=.++ ....-+.|..+.|+...++..+-.++.+...+++..++..+..++.+
T Consensus 153 ~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 153 FYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222222 22233667889999999999999999999999999999999988876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 494 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-10 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.93 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.92 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.38 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.25 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.23 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.21 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.18 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.81 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.78 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=369.61 Aligned_cols=403 Identities=21% Similarity=0.292 Sum_probs=320.0
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCC--------CCCchhHHHHHHHHhHhhhhhchHhhhhhhCch
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPM--------SPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK 119 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 119 (494)
..|.+.++++++.+++|+|.+.++..+|.+.+ +++. +..+.|++.+++.+|+.+|++++|+++||+|||
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNT---VFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHH---HHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 46777788889999999999999998888774 4422 234578999999999999999999999999999
Q ss_pred hHHHhhHHHHHHHHHHHH------------------HHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHH
Q psy4871 120 WSLLMTGPITTASWIIAM------------------YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGT 181 (494)
Q Consensus 120 ~~l~~~~~~~~i~~~~~~------------------~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~ 181 (494)
++++++.+++.+++++++ +++|++.++++|+++|++.|+..+....+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999998 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh------------hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhc
Q psy4871 182 LFQISCHLGILYTYVLGSE------------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRN 249 (494)
Q Consensus 182 ~~~~~~~~G~~~~~~~~~~------------~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~ 249 (494)
+.+.+..+|.++++.++.. ..||+.+.+..++.++..+..+++||||+|+..+++.+++++.+++.++
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 9999999999998887643 3688899998988888888889999999999999999999999988875
Q ss_pred CChhhHHHHHHHHHHcccccccccchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHH
Q psy4871 250 KTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISIL 328 (494)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 328 (494)
. +.. .++..+.++...+.++........ ..++..+......+.++.+.+.+..|.+.+.+..+... .......+
T Consensus 246 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (491)
T 4gc0_A 246 N-TLA-TQAVQEIKHSLDHGRKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTII 320 (491)
T ss_dssp H-HHH-HHHHHHHHHHHHHHHHHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred C-chh-HHHHHHHHHHHHhhhhhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHH
Confidence 2 211 111111111111111111111111 12244555666667777788889999999988877654 45556677
Q ss_pred HHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchh
Q psy4871 329 FAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFT 408 (494)
Q Consensus 329 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (494)
.++..+++.++++++.||+|||+.+..+...+.++++.++...... ...+..++..+++..+++.++.++.+
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--------APGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888999999999999999999999999888888887776554332 34445556666667777788888888
Q ss_pred hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh----------------------------------hcCCCHH
Q psy4871 409 PLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK----------------------------------HIGKTFN 454 (494)
Q Consensus 409 ~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~----------------------------------~~~~~~~ 454 (494)
.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+ |||+++|
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence 999999999999999999999999999998887765533 9999999
Q ss_pred HHHHHHhcCccc
Q psy4871 455 EIQYMFKYGKNE 466 (494)
Q Consensus 455 ~~~~~~~~~~~~ 466 (494)
|+++.+++++++
T Consensus 473 ei~~~f~~~~~~ 484 (491)
T 4gc0_A 473 ELEALWEPETKK 484 (491)
T ss_dssp HHGGGTC-----
T ss_pred HHHHHhCCCCcc
Confidence 999988765443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=282.44 Aligned_cols=370 Identities=11% Similarity=0.052 Sum_probs=274.8
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
.++.....++++.+..+++.....+.+|.+.+ ++ .++.+.|++.+++.++..++++++|+++||+|||++++++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 46777778888888999999999999999995 88 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----HhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh---
Q psy4871 128 ITTASWIIAMY----SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE--- 200 (494)
Q Consensus 128 ~~~i~~~~~~~----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--- 200 (494)
+.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999988865
Q ss_pred -hh-hHHHHHHHHHHHHHHHHH-hhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh
Q psy4871 201 -LS-YMNYLTYSLIIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE 277 (494)
Q Consensus 201 -~~-w~~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (494)
.+ ||+.|++.++++++..+. .+++||+|+....+.+.+. .+ +.+.+.++ +++.+...++...++
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~-~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KN-DYPDDYNE-KAEQELTAKQIFMQY 247 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CC-C--------------CCTHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------cc-cccccchh-hhhcccccccchHHH
Confidence 47 999999999888776554 4778888754321111100 00 00000000 000000001111233
Q ss_pred -hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhccc--CchhH
Q psy4871 278 -FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRA--GRRVL 352 (494)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~ 352 (494)
++++..+ ...+..+........+..|.|.++++ .|.+. +.+....+..++.+++.++.+++.||+ +||+.
T Consensus 248 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 248 VLPNKLLW-----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322 (451)
T ss_dssp TSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHcCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 4433332 22222222223356677888888877 46554 566777888899999999999999999 99988
Q ss_pred HHHhhHHHH-HHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHH
Q psy4871 353 FLVSSAGCS-LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILC 431 (494)
Q Consensus 353 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 431 (494)
+..+..+.. ++.+++.+. . ..+.+......++.+++.+. ..+..+.+..|.+|++.|+++.|+.+...
T Consensus 323 ~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 391 (451)
T 1pw4_A 323 TGVFFMTLVTIATIVYWMN---P-------AGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFG 391 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSC---C-------TTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh---c-------ccCHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence 877766655 444333221 0 12334444455555554443 33445588999999999999999999999
Q ss_pred HH-HHHHHHHhhhchhhhcC
Q psy4871 432 TT-LGLISYKLFFLMDKHIG 450 (494)
Q Consensus 432 ~~-~~~i~~~i~~~l~~~~~ 450 (494)
.+ +..++|.+.|.+.+..+
T Consensus 392 ~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99 99999999999988443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=275.78 Aligned_cols=347 Identities=12% Similarity=0.108 Sum_probs=267.8
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
.+....++++..+..+++.....+.+|.+.+ ++++++.+.|++.+++.+++.++++++|+++||+|||++++++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 4555666777778888888889999999996 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhhh---
Q psy4871 129 TTASWIIA---MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELS--- 202 (494)
Q Consensus 129 ~~i~~~~~---~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~--- 202 (494)
.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999887743
Q ss_pred ---------------------------hHHHHHHHHHHHHHHHHHhhc--cCcchhHHHhhCChHHHHHHHHHHhcCChh
Q psy4871 203 ---------------------------YMNYLTYSLIIPIIFTVTFMF--MPESPYFYAIKNQEGKAIESLKWLRNKTAD 253 (494)
Q Consensus 203 ---------------------------w~~~f~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a~~~~~~~~~~~~~ 253 (494)
||+.|++.+++.++..+..++ .||+++.. + ++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~----------------~~ 241 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---H----------------SD 241 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---C----------------CC
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---c----------------cc
Confidence 999998887776666554433 45554210 0 00
Q ss_pred hHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHH-HHhc-CCCc-chhHHHHHH
Q psy4871 254 QVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTI-FASS-ETFL-PSDYISILF 329 (494)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~~ 329 (494)
.++...+.++++ ++++..+... +..++ ..........|.|.+ +++. |.+. ..+....+.
T Consensus 242 ------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 304 (438)
T 3o7q_A 242 ------------AKQGSFSASLSRLARIRHWRWAV-LAQFC----YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGT 304 (438)
T ss_dssp ------------SSTTSHHHHHHHHTTCSHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred ------------ccccchhhhHHHHHhChHHHHHH-HHHHH----HHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHH
Confidence 000112233445 5554443222 22222 222245666788888 7765 6554 566777788
Q ss_pred HHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhh
Q psy4871 330 AIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 409 (494)
Q Consensus 330 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (494)
.++.+++.++.+++.||++||+.+..+.++.+++.+++.+. ++. ......++.+++.+. ..+..++
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~g~~~~~-~~~~~~~ 370 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------GGH-VGLIALTLCSAFMSI-QYPTIFS 370 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------------CHH-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------------CCc-HHHHHHHHHHHHHHH-HHHHHHH
Confidence 89999999999999999999999988888877776655442 122 233344555555544 3456668
Q ss_pred hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhcC
Q psy4871 410 LLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 410 ~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~ 450 (494)
+..|.+|++ ++.+.++.. ...+++.++|.+.|.+.+..+
T Consensus 371 ~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 371 LGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 888999977 888888877 678999999999999988544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=256.73 Aligned_cols=340 Identities=13% Similarity=0.094 Sum_probs=252.5
Q ss_pred HHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHH
Q psy4871 54 AHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW 133 (494)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 133 (494)
+++++..+..++......+.+|.+.+ ++|.++.+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 44566667778888888999999995 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHH
Q psy4871 134 IIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTY 209 (494)
Q Consensus 134 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~ 209 (494)
++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++.. .+||+.|++
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876 489999999
Q ss_pred HHHHHHHHHH-HhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHH
Q psy4871 210 SLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAF 287 (494)
Q Consensus 210 ~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 287 (494)
.+++.++..+ ..+++||+++.. + ++++.+.++++ ++++..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~---~-------------------------------~~~~~~~~~~~~~~~~~~~~-- 203 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD---A-------------------------------PRTRLLTSYKTLFGNSGFNC-- 203 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT---C-------------------------------CCCCTTTCSTHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHCcccCCCC---c-------------------------------ccccHHHHHHHHhcCcchHH--
Confidence 9888877766 446778875310 0 00112223444 44433332
Q ss_pred HHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHH-HHHHH
Q psy4871 288 VFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAG-CSLFS 364 (494)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~ 364 (494)
..+..+...........+.|.++++ .|.+. ..+.......++.+++.++.+++.||++++ +..+... ...+.
T Consensus 204 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~ 278 (375)
T 2gfp_A 204 ---YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGL 278 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSS
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 1111222222244555566666554 34433 455667778888889999999999998873 2222222 22222
Q ss_pred HHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhc
Q psy4871 365 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 444 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~ 444 (494)
..+...... ..+.+...+..++.+++.+.. .+....+..|..| +.|+++.|+.+....+|..++|.+.+.
T Consensus 279 ~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 279 LMWIPDWFG--------VMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp SSSHHHHHH--------HHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred HHHHHhhhc--------cccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111100 113344445556666666553 4555688999998 789999999999999999999999998
Q ss_pred hhh
Q psy4871 445 MDK 447 (494)
Q Consensus 445 l~~ 447 (494)
+.+
T Consensus 349 l~~ 351 (375)
T 2gfp_A 349 LPQ 351 (375)
T ss_dssp HHH
T ss_pred Hhc
Confidence 865
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=241.69 Aligned_cols=357 Identities=11% Similarity=0.033 Sum_probs=233.9
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh-hCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
++|.+..+.+++.+++.++..++++++|+++|| +|||++++.+.++.+++.++++++++++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 599999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhheecccCCCC--chhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhcc-Ccch----hH
Q psy4871 162 ISPMYLGEISETSI--RGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFM-PESP----YF 230 (494)
Q Consensus 162 ~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~-~esp----~~ 230 (494)
...+++.|++|+++ |+.+.++++.+.++|..++|.+++. .+||+.|++.++..++..+..++. |+.. +.
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 99999999999988 7778888889999999999888876 589999999877776665544322 2110 00
Q ss_pred HHhhCChHHHHHHHHH----------------HhcCChhhHHHHHH-HHHH------cc-cccccccchhhhcCcchHHH
Q psy4871 231 YAIKNQEGKAIESLKW----------------LRNKTADQVQSELQ-IIKQ------NT-SKNVERTNFREFMGRSNMKA 286 (494)
Q Consensus 231 l~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~~~-~~~~------~~-~~~~~~~~~~~~~~~~~~~~ 286 (494)
...+.+.++.++..++ ..+..+.+...... .... .. ..+..+.+..+.+.......
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP 287 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 0011122233332222 01100000000000 0000 00 00000000001000001111
Q ss_pred HHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCC-cchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHH-----HhhHH
Q psy4871 287 FVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL-----VSSAG 359 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~ 359 (494)
.......... .......+.+.+..+ .+.+ ...+.......+..+++.++.+++.||++||+... .+..+
T Consensus 288 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 288 LFIAAVLFWA----IEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHH----HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 1111111111 123344455666655 3333 35667777788888899999999999999886544 56666
Q ss_pred HHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Q psy4871 360 CSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 439 (494)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~ 439 (494)
.+++.+++....... ..+...+.+......++.+++.+. ..+..+.++.|.+|++.|+++.|+.+....+|.++++
T Consensus 364 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~ 439 (491)
T 4aps_A 364 AGLSFLLMAIPGALY---GTSGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA 439 (491)
T ss_dssp HHHHHTTTHHHHHHC---CCCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CCCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655554432211 000112444455555666666554 3456668999999999999999999999999999999
Q ss_pred Hhhhchhh
Q psy4871 440 KLFFLMDK 447 (494)
Q Consensus 440 ~i~~~l~~ 447 (494)
.+.+.+.+
T Consensus 440 ~~~~~~~~ 447 (491)
T 4aps_A 440 QLVTLYNA 447 (491)
T ss_dssp HHGGGGGG
T ss_pred HHHHHHhc
Confidence 99999876
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=220.95 Aligned_cols=360 Identities=12% Similarity=0.049 Sum_probs=211.7
Q ss_pred CCC------CCCCchhHHHHHHHHhHhhhhhchHhhhhhh-CchhHHHhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Q psy4871 83 PIP------MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-GRKWSLLMTGPITTASWIIAMYSR-SVLGLYVMRTLQGF 154 (494)
Q Consensus 83 ~~~------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~a~-~~~~l~~~r~l~G~ 154 (494)
+++ +++.+.+++.+++.++..+++++.|+++||+ |||++++++.++.+++.+++++++ +++.++++|++.|+
T Consensus 42 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 121 (524)
T 2xut_A 42 ALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIAL 121 (524)
T ss_dssp SCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 778 9999999999999999999999999999999 999999999999999999999999 99999999999999
Q ss_pred HhhhhhhhhhhheecccCCCCchhHHHH---HHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhcc-Cc
Q psy4871 155 SMAAIYVISPMYLGEISETSIRGTIGTL---FQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFM-PE 226 (494)
Q Consensus 155 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~-~e 226 (494)
+.+...+...+++.|++|+++|+++.+. ...+.++|.+++|.+++. .+||+.|++.+++.++..+..++. ++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 122 GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999877666 888899999999988765 489999999888877666554433 22
Q ss_pred chhHHHhhCChHHHHHHH-HHHhcCC-hhhHHHHHHHHHH------c-------------------ccccccccchh---
Q psy4871 227 SPYFYAIKNQEGKAIESL-KWLRNKT-ADQVQSELQIIKQ------N-------------------TSKNVERTNFR--- 276 (494)
Q Consensus 227 sp~~l~~~~~~~~a~~~~-~~~~~~~-~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~--- 276 (494)
.++....+.+..+..+.+ ...++.. +.+.......... . ..+...+.+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (524)
T 2xut_A 202 YIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLE 281 (524)
T ss_dssp CCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHH
T ss_pred ccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHh
Confidence 110000000000100000 0001000 0000000000000 0 00000001110
Q ss_pred ---------hhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc--chhHHHHHHHHHHHHhhhhhhhhh-
Q psy4871 277 ---------EFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL--PSDYISILFAIILLVSIFPSTYYI- 344 (494)
Q Consensus 277 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~- 344 (494)
+.++++............... +........+.+.+....+.+. ..+.......+..+++..+.+++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (524)
T 2xut_A 282 RARKSHPDAAVDGVRSVLRILVLFALVTPF-WSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLY 360 (524)
T ss_dssp HSCCSCCSSSSTTTTTHHHHHHHHTTSHHH-HTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC--
T ss_pred hhhccccHhHHHHHHHHHHHHHHHHHHHHH-HHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhH
Confidence 111111111111111111111 1111111112222222222211 344444444455556666666553
Q ss_pred ---cccCc----hhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCc
Q psy4871 345 ---DRAGR----RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS 417 (494)
Q Consensus 345 ---d~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 417 (494)
+|.++ ++.+..+.++.+++.+++....... ..+...+.+..++..++.+++.+. ..+..+.+..|..|+
T Consensus 361 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~ 436 (524)
T 2xut_A 361 PAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM---DGGSALSIFWQILPYALLTFGEVL-VSATGLEFAYSQAPK 436 (524)
T ss_dssp ----------CCHHHHHTHHHHHHHHHHTTTTTTTTT---TTTCCCCSHHHHHHHHHHHHHHHH-HHHHHTTTHHHHCCT
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcH
Confidence 44432 2345555555555554443321000 000012344445555566655544 345566889999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 418 NMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 418 ~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
+.||+++|+.++..++|++++|.+.+.+.+
T Consensus 437 ~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 437 AMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp TCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999876
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-26 Score=221.26 Aligned_cols=337 Identities=11% Similarity=0.018 Sum_probs=203.3
Q ss_pred cchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHH---HHHHHhhH-H
Q psy4871 68 AWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI---IAMYSRSV-L 143 (494)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~---~~~~a~~~-~ 143 (494)
+...+.+|.+.++ ++|+++.+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++.. .+.+++.. .
T Consensus 24 ~~~~~~~~~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 24 GAYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHTTTHHHHHHT--TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556554323 7899999999999999999999999999999999999999998887765322 12233322 1
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhheecccCC--CCchhHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHH
Q psy4871 144 GLYVMRTLQGFSMAAIYVISPMYLGEISET--SIRGTIGTLFQISCHLGILYTYVLGSE---LSYMNYLTYSLIIPIIFT 218 (494)
Q Consensus 144 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~---~~w~~~f~~~~~~~~~~~ 218 (494)
.++..+++.|++.+..++.....+.++.++ ++|+...+....+..+|..++|.++.. .+||+.|++.+++.++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~ 181 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 234556666665555554444444444433 345666667666667777777777665 379999988877765555
Q ss_pred HHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHH
Q psy4871 219 VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFR 297 (494)
Q Consensus 219 ~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (494)
+..++.+|+|+. +.+.+ ++.+ ..+++....++++ ++++..+...+..+...
T Consensus 182 ~~~~~~~~~~~~---~~~~~------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (417)
T 2cfq_A 182 VLLFFAKTDAPS---SATVA------------NAVG----------ANHSAFSLKLALELFRQPKLWFLSLYVIGVS--- 233 (417)
T ss_dssp HHSCSSCCCCSC---SSCSS------------SSSS----------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHcCccccc---ccccc------------cccc----------cccccccHHHHHHHhcCCchhhHHHHHHHHH---
Confidence 555544433210 00000 0000 0000001112334 45444432221111111
Q ss_pred HccchHhHHHhHHHHHHhcCCC----c-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHH
Q psy4871 298 AFTGVQSIIAYANTIFASSETF----L-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYY 372 (494)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (494)
........+.|.++.+.... . ..+....+..++.+++.++.+++.||+|||+++..+..+.+++.+++.+
T Consensus 234 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--- 308 (417)
T 2cfq_A 234 --CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--- 308 (417)
T ss_dssp --HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred --HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---
Confidence 11223334456665443110 1 1234455566778889999999999999999888777776665544432
Q ss_pred hhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHH-HHHHHHHHHHHHHhhhchhhhc
Q psy4871 373 VTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVI-NILCTTLGLISYKLFFLMDKHI 449 (494)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~i~~~i~~~l~~~~ 449 (494)
..+.+..++...+.+.+... ..+..+.+++|.+|++.|+++.++. +...++|++++|.+.|.+.+..
T Consensus 309 ---------~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 309 ---------ATSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp ---------CCSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred ---------hccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 12233333333333433322 2233457899999999999999995 8888999999999999998743
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=127.05 Aligned_cols=157 Identities=10% Similarity=0.047 Sum_probs=130.6
Q ss_pred cccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhh--CchhHHHhhHHHHH-HHHHHHHHH--h
Q psy4871 66 SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI--GRKWSLLMTGPITT-ASWIIAMYS--R 140 (494)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-i~~~~~~~a--~ 140 (494)
........+|.+.++ .++.++.+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .
T Consensus 267 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (451)
T 1pw4_A 267 LRYGILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG 344 (451)
T ss_dssp HHHHHHHHHHHHBTT--BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhccc
Confidence 333345566666642 4899999999999999999999999999999999 99999988877776 666666555 3
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHH-HHHHHHHhhhh----hhhHHHHHHHHHHHH
Q psy4871 141 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHL-GILYTYVLGSE----LSYMNYLTYSLIIPI 215 (494)
Q Consensus 141 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~----~~w~~~f~~~~~~~~ 215 (494)
+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++......+ |..+++.+.+. .+|+..|++.+++.+
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 424 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 424 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6778888889999999999898899999999999999999999999998 99999888766 489999999888887
Q ss_pred HHHHHhhcc
Q psy4871 216 IFTVTFMFM 224 (494)
Q Consensus 216 ~~~~~~~~~ 224 (494)
+..+..+++
T Consensus 425 ~~~~~~~~~ 433 (451)
T 1pw4_A 425 LAVILLIVV 433 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.7e-12 Score=121.61 Aligned_cols=141 Identities=21% Similarity=0.277 Sum_probs=115.8
Q ss_pred CCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhe
Q psy4871 88 PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYL 167 (494)
Q Consensus 88 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i 167 (494)
....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888889999999999999999999999999888888877777777888888888888888777777788999
Q ss_pred ecccCCCCchhHHHH-HHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh-hccCcch
Q psy4871 168 GEISETSIRGTIGTL-FQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF-MFMPESP 228 (494)
Q Consensus 168 ~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~-~~~~esp 228 (494)
.|.+|++.|+.+.++ ++.+..+|..++|.+++. .+++..|.+.++++++..+.. +..||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999888 477777888888887765 478888888888877776554 4456543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=119.02 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=116.2
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHH-----hhHHHHHHHHHHHHHHh---------hHHHHHHH
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLL-----MTGPITTASWIIAMYSR---------SVLGLYVM 148 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~i~~~~~~~a~---------~~~~l~~~ 148 (494)
.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++..+.. +.+.+.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4aps_A 313 RVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGS 392 (491)
T ss_dssp SCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHH
T ss_pred HhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHH
Confidence 45666678899999999999999999999999999987665 77777777777766654 67778888
Q ss_pred HHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHhhc
Q psy4871 149 RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTYSLIIPIIFTVTFMF 223 (494)
Q Consensus 149 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~ 223 (494)
-++.|++.+...+....++.|.+|+++|+.+.++......+|..+++.+.+.+ ++.+.|.+.++++++..+..++
T Consensus 393 ~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 393 WALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998774 5667777777777666655533
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.7e-11 Score=113.78 Aligned_cols=139 Identities=11% Similarity=-0.023 Sum_probs=115.0
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
.++.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++.. ++.|++.+...+.
T Consensus 289 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 367 (438)
T 3o7q_A 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPT 367 (438)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHH
Confidence 668999999999999999999999999999999999999999999999999888888877665544 8889999999999
Q ss_pred hhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hh-hHHHHHHHHHHHHHHHHHhhcc
Q psy4871 163 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LS-YMNYLTYSLIIPIIFTVTFMFM 224 (494)
Q Consensus 163 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~-w~~~f~~~~~~~~~~~~~~~~~ 224 (494)
..++..|.+|++ ++.+.++.. ...+|..++|.+.+. .+ ++..|++.++..++..+..+..
T Consensus 368 ~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 368 IFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999866 888888776 455788888877765 46 8888887766655554444443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-10 Score=113.36 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=109.9
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh-----hHHHH
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR-----SVLGL 145 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~-----~~~~l 145 (494)
....+.+.+ ..+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...+
T Consensus 297 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 297 LYYAPEVFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhcchHHHH---hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 334455553 5566666677777788888999999999999999999999999988888877665432 12222
Q ss_pred HH-HHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----------hhhHHHHHHHHHHH
Q psy4871 146 YV-MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----------LSYMNYLTYSLIIP 214 (494)
Q Consensus 146 ~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----------~~w~~~f~~~~~~~ 214 (494)
+. .-+..+++ ....+....+.+|.+|.+.|+.+.++......+|.++++.+... .++.+.|++.++++
T Consensus 374 ~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 374 LSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22 22222222 23346677899999999999999999988888888877655433 24556778888877
Q ss_pred HHHHHHh-hccCcch
Q psy4871 215 IIFTVTF-MFMPESP 228 (494)
Q Consensus 215 ~~~~~~~-~~~~esp 228 (494)
++..+.. +++||+.
T Consensus 453 ~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 453 VLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHCCCCT
T ss_pred HHHHHHHHheecCCC
Confidence 7776554 7889984
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.9e-09 Score=97.32 Aligned_cols=133 Identities=15% Similarity=0.057 Sum_probs=105.6
Q ss_pred hHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4871 302 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 380 (494)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (494)
........|.+.++.|.+. +.+.......++..++.++.|++.||+|||+.+..+..+.+++.+++....
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 86 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--------- 86 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc---------
Confidence 4445556677777777664 566778888899999999999999999999999999999888887776642
Q ss_pred CCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 381 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
+.+..++..++.+.+.+. ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus 87 ---~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 87 ---SLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ---cHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334445555566665554 345556889999999999999999999999999999999999876
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.7e-08 Score=97.17 Aligned_cols=134 Identities=10% Similarity=0.025 Sum_probs=103.0
Q ss_pred hHhHHHhHHHHHHh-cC------CCc-chhHHHHHHHHHHHHhhhhhhhhhccc-CchhHHHHhhHHHHHHHHHHHHHHH
Q psy4871 302 VQSIIAYANTIFAS-SE------TFL-PSDYISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCSLFSFIAGLYYY 372 (494)
Q Consensus 302 ~~~~~~~~~~~~~~-~~------~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (494)
.+....+.+.++.+ .+ .+. +.+.......++..++.++.|+++||+ |||+++..+.++.+++.+++.+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 44555666666654 55 554 677888888999999999999999999 99999999988888887776653
Q ss_pred hhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHH---HHHHHHHHHHHHHHhhhchhh
Q psy4871 373 VTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAV---INILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~~~~i~~~i~~~l~~ 447 (494)
..+.+..++..++.+++.+. ..+...+++.|.+|++.|+++.+. .+....+|..++|.+.+.+.+
T Consensus 106 ---------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 106 ---------EHSVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred ---------cccHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11445555566666666554 345556899999999999776666 889999999999999998876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 494 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 5e-09 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 6e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 56.2 bits (134), Expect = 5e-09
Identities = 34/364 (9%), Positives = 92/364 (25%), Gaps = 25/364 (6%)
Query: 86 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKW----SLLMTGPITTASWIIAMYSRS 141
S + + ++ I I S G + +R + L++ + + + S
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 142 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE- 200
+ ++V+ L G+ + + RG I +++ + ++G +L
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175
Query: 201 -LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSEL 259
+ ++ + + +F E + ++ + EL
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235
Query: 260 QIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETF 319
+ + + + L + A
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK--------- 286
Query: 320 LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQY 379
S + L+ + + D+ R +L + +Y+
Sbjct: 287 --SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM------- 337
Query: 380 EIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 439
P + + ++ F G L E + + G ++
Sbjct: 338 -NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 396
Query: 440 KLFF 443
Sbjct: 397 SAIV 400
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 46.3 bits (108), Expect = 6e-06
Identities = 40/391 (10%), Positives = 101/391 (25%), Gaps = 15/391 (3%)
Query: 57 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ F P L +S ++ + A I + + L G+L +++
Sbjct: 13 GLFFFFYFFIMGAYFPFFPIWLHDI--NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70
Query: 117 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGF----------SMAAIYVISPMY 166
G + LL + L + + A V + +
Sbjct: 71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130
Query: 167 LGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPE 226
G + LG ++ + + + S I+ + F +
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190
Query: 227 SPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKA 286
+P + N G + + + + F +
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 287 FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDR 346
F + + A+ +F + + L ++S+
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310
Query: 347 AGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPL 406
+ V+ L + + + G + Y+T + + T +L + F +
Sbjct: 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI---YLVCFCFFKQLAMIFMSV 367
Query: 407 FTPLLSEYFSSNMKAVSCAVINILCTTLGLI 437
+ E + ++ + T + +
Sbjct: 368 LAGNMYESIGFQGAYLVLGLVALGFTLISVF 398
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.43 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.2 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.6e-34 Score=277.11 Aligned_cols=373 Identities=11% Similarity=0.042 Sum_probs=261.1
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
.+|.++..+.++.+...++...++.+.|.++ |+|+|++|.|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus 22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~----~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV----EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT----SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 4788888888888888888888888889876 779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh---
Q psy4871 128 ITTASWIIAMYSR----SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE--- 200 (494)
Q Consensus 128 ~~~i~~~~~~~a~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--- 200 (494)
+.+++.+++++++ +++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++.++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence 9999999988764 778999999999999999999999999999999999999999999999999888877654
Q ss_pred --hhhHHHHHHHHHHHHHHHHHh-hccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh
Q psy4871 201 --LSYMNYLTYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE 277 (494)
Q Consensus 201 --~~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (494)
.+||+.|++.+++.++..+.. ++++|+|+........+. +.+..++. ..+.+.+...++...+.
T Consensus 178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~ 244 (447)
T d1pw4a_ 178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY------------KNDYPDDY-NEKAEQELTAKQIFMQY 244 (447)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT------------CCC--------------CCTHHHHHH
T ss_pred hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh------------hhhcccch-hhccccccchhhHHHHH
Confidence 379999999888887776555 556666543211111000 00000000 00000000111112222
Q ss_pred -hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhc-CCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHH
Q psy4871 278 -FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL 354 (494)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 354 (494)
++++..+ ......+......+....|.+.++.+. +.+. ..+....+..+..+++.++.+++.||++|++...
T Consensus 245 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 319 (447)
T d1pw4a_ 245 VLPNKLLW-----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319 (447)
T ss_dssp TSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHcCchHH-----HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc
Confidence 3333222 222222222233456677778877654 4443 5667777888899999999999999999876554
Q ss_pred HhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHH
Q psy4871 355 VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTL 434 (494)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 434 (494)
.......+............ ..+.+...+..++.+++.. +..+..+.+..|.+|++.|+++.|+.+..++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~ 391 (447)
T d1pw4a_ 320 TGVFFMTLVTIATIVYWMNP-------AGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 391 (447)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-------TTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 44444333333322221111 2234444444445444433 234455678899999999999999999998885
Q ss_pred -HHHHHHhhhchhhhcC
Q psy4871 435 -GLISYKLFFLMDKHIG 450 (494)
Q Consensus 435 -~~i~~~i~~~l~~~~~ 450 (494)
.+++|.+.|.+.+..|
T Consensus 392 g~~~~~~~~g~~~~~~g 408 (447)
T d1pw4a_ 392 GSVAASAIVGYTVDFFG 408 (447)
T ss_dssp HHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 5668899999988544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.6e-25 Score=212.48 Aligned_cols=344 Identities=12% Similarity=-0.005 Sum_probs=214.9
Q ss_pred HHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh
Q psy4871 61 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR 140 (494)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~ 140 (494)
+...+..+...|.+|.+.++ ++|+|++++|++.+++.++..++++++|+++||+|||++++++..+..++..+..+..
T Consensus 17 f~~~~~~~~~~~~l~~~l~~--~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~ 94 (417)
T d1pv7a_ 17 FFYFFIMGAYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555667777764323 7899999999999999999999999999999999999999999999999999888877
Q ss_pred hHHHH----HHHHHHHHhHhhhhhhhhhhheecccCC--CCchhHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHH
Q psy4871 141 SVLGL----YVMRTLQGFSMAAIYVISPMYLGEISET--SIRGTIGTLFQISCHLGILYTYVLGSE---LSYMNYLTYSL 211 (494)
Q Consensus 141 ~~~~l----~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~---~~w~~~f~~~~ 211 (494)
+.... ++.+++.+.+.+...........+..++ +++.+..+........|..+++.++.. .+|+..+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 174 (417)
T d1pv7a_ 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGS 174 (417)
T ss_dssp HHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchh
Confidence 65554 3444444444444444444333333322 234455566666677777777776655 34555555555
Q ss_pred HHHHH-HHHHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHH
Q psy4871 212 IIPII-FTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVF 289 (494)
Q Consensus 212 ~~~~~-~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 289 (494)
....+ ..+..+..+|+|+.. +..++ ++..++........+ .+.+..+ ....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 227 (417)
T d1pv7a_ 175 GCALILAVLLFFAKTDAPSSA----------------------TVANA----VGANHSAFSLKLALELFRQPKLW-FLSL 227 (417)
T ss_dssp HHHHHHHHHHHSSCCCSCSSS----------------------CSSHH----HHSCCCCCCHHHHHHHTTSSHHH-HHHH
T ss_pred hHHHHHHHHHHHHhcccccch----------------------hhhhh----hhhhccccccccccccccccccc-chhh
Confidence 54444 445556667665210 00000 000000111111122 2222222 2222
Q ss_pred HHHHHHHHHccchHhHHHhHHHHHHhcCCC----c-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHH
Q psy4871 290 MAFLAVFRAFTGVQSIIAYANTIFASSETF----L-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFS 364 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 364 (494)
........ ......+.+.+....... . ..........++..++..+.+++.||.++|+.+..+..+.+++.
T Consensus 228 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~ 303 (417)
T d1pv7a_ 228 YVIGVSCT----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRI 303 (417)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH----HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhh
Confidence 22221111 112222222222222111 1 23344556677788999999999999999999999888888877
Q ss_pred HHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHH-HHHHHHHHHHHHhhh
Q psy4871 365 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVIN-ILCTTLGLISYKLFF 443 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~~~~i~~~i~~ 443 (494)
+.+.. .++.+..++..++.+++.+... +...+++.|.+|++.|+++.|+.. ....+|.+++|.+.|
T Consensus 304 ~~~~~------------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G 370 (417)
T d1pv7a_ 304 IGSSF------------ATSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHHHT------------CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred hcccc------------ccccchhhHHHHHHHHHHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655 2455566666666677666544 455588999999999999999864 567799999999999
Q ss_pred chhhhcC
Q psy4871 444 LMDKHIG 450 (494)
Q Consensus 444 ~l~~~~~ 450 (494)
++.|..|
T Consensus 371 ~l~~~~g 377 (417)
T d1pv7a_ 371 NMYESIG 377 (417)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
Confidence 9998433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.2e-13 Score=130.38 Aligned_cols=142 Identities=20% Similarity=0.248 Sum_probs=122.3
Q ss_pred CCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhh
Q psy4871 84 IPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVIS 163 (494)
Q Consensus 84 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~ 163 (494)
.+.+....+...+...++..++..+.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 34455667888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheecccCCCCchhHHHHH-HHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh-hccC
Q psy4871 164 PMYLGEISETSIRGTIGTLF-QISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF-MFMP 225 (494)
Q Consensus 164 ~~~i~e~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~-~~~~ 225 (494)
.+++.|.+|+++|++..++. +....+|..++|.+.++ +||+..|++.+++.++..++. +.++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999974 55667788877777655 589999999888887776555 4443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=5e-11 Score=113.66 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=110.0
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHhHhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY-----SRSVLGLYVMRTLQGFSMA 157 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----a~~~~~l~~~r~l~G~~~g 157 (494)
..+.+..+.++..+...++..++.++.|++.||++||+......+...+..+.... ..+.+..+++-++.|++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 358 (447)
T d1pw4a_ 279 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY 358 (447)
T ss_dssp BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999876555444443333333222 3467778888889999988
Q ss_pred hhhhhhhhheecccCCCCchhHHHHHHHHHHH-HHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhc
Q psy4871 158 AIYVISPMYLGEISETSIRGTIGTLFQISCHL-GILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMF 223 (494)
Q Consensus 158 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~ 223 (494)
...+....+..|.+|++.|+.+.++.+....+ |.++++.+.+. .||+..|++.+...++..++..+
T Consensus 359 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 359 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999998776655 56667766654 58999988887777766655543
|