Psyllid ID: psy5052

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTEISL
cHHccccccEEccccccHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHHHccccccccccccccccEEEEcccccEEEEEcccccccccccccEEEcccccccccccccccccc
ccHccccEEEEEEccccHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEEEEccccHHHHHHHHHHHHccccEEEEEEEcccccccccHcccccHHHHHHHHHHHcccccccccccccccEEEEcccccEEEEEEEEcccccccccccEEEEccccEEEEEEccccccc
ykkagldsinisldtlkpdkyefitrrkgwSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLtrdrpidvrfieympfsgnqwnntkimpFSEMLTKIKEAhpdlltlenapndtskaykvpefkgqvgfITSMTEHFcgtcnrlrlmadgslkvclfgnteisl
ykkagldsinisldtlkpdkyefitrrkgwsrVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEympfsgnqwnntKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTEISL
YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTEISL
********INISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLE*******KAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGN*****
YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP*********NDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGN*EI**
YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTEISL
YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNT****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTEISL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query172 2.2.26 [Sep-21-2011]
Q8IQF1 565 Molybdenum cofactor biosy yes N/A 0.988 0.300 0.690 1e-68
Q9NZB8 636 Molybdenum cofactor biosy yes N/A 0.994 0.268 0.590 9e-61
Q5RKZ7 636 Molybdenum cofactor biosy yes N/A 0.994 0.268 0.596 1e-60
Q1JQD7 633 Molybdenum cofactor biosy yes N/A 0.994 0.270 0.608 4e-59
Q39055390 Cyclic pyranopterin monop yes N/A 0.994 0.438 0.573 5e-57
Q54NM6 630 Molybdenum cofactor biosy yes N/A 0.988 0.269 0.566 3e-54
Q20624 600 Molybdenum cofactor biosy yes N/A 0.988 0.283 0.529 7e-48
A8MLW5320 Cyclic pyranopterin monop yes N/A 0.970 0.521 0.453 2e-38
Q2RGL2323 Cyclic pyranopterin monop yes N/A 0.994 0.529 0.444 1e-37
A6TVF9320 Cyclic pyranopterin monop yes N/A 0.970 0.521 0.465 7e-37
>sp|Q8IQF1|MOCS1_DROME Molybdenum cofactor biosynthesis protein 1 OS=Drosophila melanogaster GN=Mocs1 PE=2 SV=1 Back     alignment and function desciption
 Score =  258 bits (660), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 142/171 (83%), Gaps = 1/171 (0%)

Query: 2   KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD 61
           ++AGLD++NISLDTLK D++E ITRRKGW RV+AGIDLAVQLGY   KVN V+M++FN+D
Sbjct: 168 QRAGLDNLNISLDTLKRDRFEKITRRKGWERVIAGIDLAVQLGY-RPKVNCVLMRDFNED 226

Query: 62  EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPND 121
           EI DFV  TR+RP+DVRFIEYMPFSGN+W+  +++ + + L  I++  PD   L N PND
Sbjct: 227 EICDFVEFTRNRPVDVRFIEYMPFSGNKWHTERLISYKDTLQIIRQRWPDFKALPNGPND 286

Query: 122 TSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTEISL 172
           TSKAY VP FKGQVGFITSMTEHFCGTCNRLRL ADG++KVCLFGN E SL
Sbjct: 287 TSKAYAVPGFKGQVGFITSMTEHFCGTCNRLRLTADGNIKVCLFGNKEFSL 337
Isoform Mocs1a and isoform Mocs1b probably form a complex that catalyzes the conversion of a guanosine derivative to precursor Z during molybdenum cofactor biosynthesis.
Drosophila melanogaster (taxid: 7227)
>sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3 Back     alignment and function description
>sp|Q5RKZ7|MOCS1_MOUSE Molybdenum cofactor biosynthesis protein 1 OS=Mus musculus GN=Mocs1 PE=2 SV=2 Back     alignment and function description
>sp|Q1JQD7|MOCS1_BOVIN Molybdenum cofactor biosynthesis protein 1 OS=Bos taurus GN=MOCS1 PE=2 SV=2 Back     alignment and function description
>sp|Q39055|CNX2_ARATH Cyclic pyranopterin monophosphate synthase, mitochondrial OS=Arabidopsis thaliana GN=CNX2 PE=1 SV=1 Back     alignment and function description
>sp|Q54NM6|MOCS1_DICDI Molybdenum cofactor biosynthesis protein 1 OS=Dictyostelium discoideum GN=mocs1 PE=3 SV=1 Back     alignment and function description
>sp|Q20624|MOCS1_CAEEL Molybdenum cofactor biosynthesis protein 1 OS=Caenorhabditis elegans GN=F49E2.1 PE=2 SV=3 Back     alignment and function description
>sp|A8MLW5|MOAA_ALKOO Cyclic pyranopterin monophosphate synthase OS=Alkaliphilus oremlandii (strain OhILAs) GN=moaA PE=3 SV=1 Back     alignment and function description
>sp|Q2RGL2|MOAA_MOOTA Cyclic pyranopterin monophosphate synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=moaA PE=3 SV=1 Back     alignment and function description
>sp|A6TVF9|MOAA_ALKMQ Cyclic pyranopterin monophosphate synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=moaA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query172
270001734 545 hypothetical protein TcasGA2_TC000610 [T 0.994 0.313 0.713 4e-72
242014079 569 molybdopterin cofactor synthesis protein 0.994 0.300 0.684 3e-69
170041251 553 molybdopterin cofactor synthesis protein 0.988 0.307 0.678 6e-68
194868796 385 GG15474 [Drosophila erecta] gi|190654118 0.988 0.441 0.695 3e-67
158295280 639 AGAP006072-PA [Anopheles gambiae str. PE 0.988 0.266 0.672 3e-67
194750546 386 GF10488 [Drosophila ananassae] gi|190624 0.988 0.440 0.695 5e-67
28574490 565 molybdenum cofactor synthesis 1 ortholog 0.988 0.300 0.690 5e-67
195326684 385 GM25246 [Drosophila sechellia] gi|194118 0.988 0.441 0.695 5e-67
195378068 384 GJ13645 [Drosophila virilis] gi|19415496 0.988 0.442 0.672 3e-66
195589405 331 GD14280 [Drosophila simulans] gi|1941964 0.988 0.513 0.695 3e-66
>gi|270001734|gb|EEZ98181.1| hypothetical protein TcasGA2_TC000610 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  275 bits (703), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 151/171 (88%)

Query: 2   KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD 61
           ++AGLD +NISLDTLK DKYEFITRRKGW R + GIDLA+QLGYD +K+N VVMK FNDD
Sbjct: 145 QRAGLDIVNISLDTLKRDKYEFITRRKGWERAMMGIDLALQLGYDPVKINCVVMKGFNDD 204

Query: 62  EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPND 121
           EI+DFV  T+DR +D+RFIEYMPF+GN+W+ +K++ + +ML+ IK+ +PDL  LEN PND
Sbjct: 205 EIIDFVGFTKDRNVDIRFIEYMPFTGNKWDLSKLVSYRDMLSVIKKQYPDLYPLENKPND 264

Query: 122 TSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTEISL 172
           TSKA+KVP+F+GQVGFITSM+EHFCG+CNRLR+ ADG+LKVCLFGNTEISL
Sbjct: 265 TSKAWKVPKFRGQVGFITSMSEHFCGSCNRLRITADGNLKVCLFGNTEISL 315

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242014079|ref|XP_002427725.1| molybdopterin cofactor synthesis protein A, putative [Pediculus humanus corporis] gi|212512166|gb|EEB14987.1| molybdopterin cofactor synthesis protein A, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|170041251|ref|XP_001848384.1| molybdopterin cofactor synthesis protein a [Culex quinquefasciatus] gi|167864830|gb|EDS28213.1| molybdopterin cofactor synthesis protein a [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|194868796|ref|XP_001972335.1| GG15474 [Drosophila erecta] gi|190654118|gb|EDV51361.1| GG15474 [Drosophila erecta] Back     alignment and taxonomy information
>gi|158295280|ref|XP_316123.4| AGAP006072-PA [Anopheles gambiae str. PEST] gi|157015960|gb|EAA11683.4| AGAP006072-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|194750546|ref|XP_001957591.1| GF10488 [Drosophila ananassae] gi|190624873|gb|EDV40397.1| GF10488 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|28574490|ref|NP_788494.1| molybdenum cofactor synthesis 1 ortholog, isoform C [Drosophila melanogaster] gi|74865117|sp|Q8IQF1.1|MOCS1_DROME RecName: Full=Molybdenum cofactor biosynthesis protein 1; Includes: RecName: Full=Cyclic pyranopterin monophosphate synthase; AltName: Full=Molybdenum cofactor biosynthesis protein A; Includes: RecName: Full=Cyclic pyranopterin monophosphate synthase accessory protein; AltName: Full=Molybdenum cofactor biosynthesis protein C gi|23093669|gb|AAN11896.1| molybdenum cofactor synthesis 1 ortholog, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195326684|ref|XP_002030055.1| GM25246 [Drosophila sechellia] gi|194118998|gb|EDW41041.1| GM25246 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195378068|ref|XP_002047809.1| GJ13645 [Drosophila virilis] gi|194154967|gb|EDW70151.1| GJ13645 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195589405|ref|XP_002084442.1| GD14280 [Drosophila simulans] gi|194196451|gb|EDX10027.1| GD14280 [Drosophila simulans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query172
FB|FBgn0263241 565 Mocs1 "Molybdenum cofactor syn 0.988 0.300 0.690 4.8e-62
ZFIN|ZDB-GENE-130215-1402 mocs1 "molybdenum cofactor syn 0.994 0.425 0.596 2.3e-55
UNIPROTKB|Q1JQD7 633 MOCS1 "Molybdenum cofactor bio 0.994 0.270 0.608 2.9e-55
UNIPROTKB|F1RVP4 637 MOCS1 "Uncharacterized protein 0.994 0.268 0.608 1.3e-54
UNIPROTKB|Q9NZB8 636 MOCS1 "Molybdenum cofactor bio 0.994 0.268 0.590 1.6e-54
MGI|MGI:1928904 636 Mocs1 "molybdenum cofactor syn 0.994 0.268 0.596 2.1e-54
UNIPROTKB|E2RDQ4 634 MOCS1 "Uncharacterized protein 0.994 0.269 0.596 2.6e-54
RGD|1308471 480 Mocs1 "molybdenum cofactor syn 0.994 0.356 0.590 3.4e-54
UNIPROTKB|F1N8A1366 MOCS1 "Uncharacterized protein 0.994 0.467 0.602 5.5e-54
UNIPROTKB|F1NZS3342 MOCS1 "Uncharacterized protein 0.994 0.5 0.602 5.5e-54
FB|FBgn0263241 Mocs1 "Molybdenum cofactor synthesis 1 ortholog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 118/171 (69%), Positives = 142/171 (83%)

Query:     2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD 61
             ++AGLD++NISLDTLK D++E ITRRKGW RV+AGIDLAVQLGY   KVN V+M++FN+D
Sbjct:   168 QRAGLDNLNISLDTLKRDRFEKITRRKGWERVIAGIDLAVQLGY-RPKVNCVLMRDFNED 226

Query:    62 EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPND 121
             EI DFV  TR+RP+DVRFIEYMPFSGN+W+  +++ + + L  I++  PD   L N PND
Sbjct:   227 EICDFVEFTRNRPVDVRFIEYMPFSGNKWHTERLISYKDTLQIIRQRWPDFKALPNGPND 286

Query:   122 TSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTEISL 172
             TSKAY VP FKGQVGFITSMTEHFCGTCNRLRL ADG++KVCLFGN E SL
Sbjct:   287 TSKAYAVPGFKGQVGFITSMTEHFCGTCNRLRLTADGNIKVCLFGNKEFSL 337
GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=ISS;NAS
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0019008 "molybdopterin synthase complex" evidence=IEA
ZFIN|ZDB-GENE-130215-1 mocs1 "molybdenum cofactor synthesis 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q1JQD7 MOCS1 "Molybdenum cofactor biosynthesis protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVP4 MOCS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NZB8 MOCS1 "Molybdenum cofactor biosynthesis protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1928904 Mocs1 "molybdenum cofactor synthesis 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDQ4 MOCS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1308471 Mocs1 "molybdenum cofactor synthesis 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8A1 MOCS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZS3 MOCS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8IQF1MOCS1_DROMENo assigned EC number0.69000.98830.3008yesN/A
Q9NZB8MOCS1_HUMANNo assigned EC number0.59060.99410.2688yesN/A
Q20624MOCS1_CAEELNo assigned EC number0.52900.98830.2833yesN/A
Q54NM6MOCS1_DICDINo assigned EC number0.56640.98830.2698yesN/A
Q39055CNX2_ARATHNo assigned EC number0.57300.99410.4384yesN/A
Q1JQD7MOCS1_BOVINNo assigned EC number0.60810.99410.2701yesN/A
Q5RKZ7MOCS1_MOUSENo assigned EC number0.59640.99410.2688yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
PLN02951373 PLN02951, PLN02951, Molybderin biosynthesis protei 8e-98
TIGR02666334 TIGR02666, moaA, molybdenum cofactor biosynthesis 7e-68
PRK00164331 PRK00164, moaA, molybdenum cofactor biosynthesis p 5e-67
COG2896322 COG2896, MoaA, Molybdenum cofactor biosynthesis en 3e-60
PRK13361329 PRK13361, PRK13361, molybdenum cofactor biosynthes 7e-46
pfam06463127 pfam06463, Mob_synth_C, Molybdenum Cofactor Synthe 3e-39
TIGR02668302 TIGR02668, moaA_archaeal, probable molybdenum cofa 8e-32
pfam04055165 pfam04055, Radical_SAM, Radical SAM superfamily 7e-12
COG0535347 COG0535, COG0535, Predicted Fe-S oxidoreductases [ 5e-07
smart00729216 smart00729, Elp3, Elongator protein 3, MiaB family 3e-06
COG2100414 COG2100, COG2100, Predicted Fe-S oxidoreductase [G 6e-05
cd01335204 cd01335, Radical_SAM, Radical SAM superfamily 3e-04
>gnl|CDD|215513 PLN02951, PLN02951, Molybderin biosynthesis protein CNX2 Back     alignment and domain information 
 Score =  286 bits (734), Expect = 8e-98
 Identities = 106/171 (61%), Positives = 136/171 (79%)

Query: 2   KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD 61
           K+AGL S+NISLDTL P K+EF+TRRKG  RVL  ID A++LGY+ +KVN VVM+ FNDD
Sbjct: 156 KEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDD 215

Query: 62  EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPND 121
           EI DFV LTRD+PI+VRFIE+MPF GN WN  K++P++EM+ +I++  P L  L++ P D
Sbjct: 216 EICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTD 275

Query: 122 TSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTEISL 172
           T+K +++    G V FITSMTEHFC  CNRLRL+ADG+LKVCLFG +E+SL
Sbjct: 276 TAKNFRIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNLKVCLFGPSEVSL 326

Length = 373
>gnl|CDD|233967 TIGR02666, moaA, molybdenum cofactor biosynthesis protein A, bacterial Back     alignment and domain information
>gnl|CDD|234672 PRK00164, moaA, molybdenum cofactor biosynthesis protein A; Reviewed Back     alignment and domain information
>gnl|CDD|225449 COG2896, MoaA, Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|237364 PRK13361, PRK13361, molybdenum cofactor biosynthesis protein A; Provisional Back     alignment and domain information
>gnl|CDD|115139 pfam06463, Mob_synth_C, Molybdenum Cofactor Synthesis C Back     alignment and domain information
>gnl|CDD|233968 TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal Back     alignment and domain information
>gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily Back     alignment and domain information
>gnl|CDD|223609 COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only] Back     alignment and domain information
>gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM Back     alignment and domain information
>gnl|CDD|225011 COG2100, COG2100, Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 172
COG2896322 MoaA Molybdenum cofactor biosynthesis enzyme [Coen 100.0
PRK13361329 molybdenum cofactor biosynthesis protein A; Provis 100.0
PLN02951373 Molybderin biosynthesis protein CNX2 100.0
PRK00164331 moaA molybdenum cofactor biosynthesis protein A; R 100.0
TIGR02666334 moaA molybdenum cofactor biosynthesis protein A, b 100.0
TIGR02668302 moaA_archaeal probable molybdenum cofactor biosynt 100.0
KOG2876|consensus323 99.97
PF06463128 Mob_synth_C: Molybdenum Cofactor Synthesis C; Inte 99.94
TIGR02109358 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. 99.73
PRK05301378 pyrroloquinoline quinone biosynthesis protein PqqE 99.72
TIGR03470318 HpnH hopanoid biosynthesis associated radical SAM 99.7
COG0535347 Predicted Fe-S oxidoreductases [General function p 99.63
PRK13758370 anaerobic sulfatase-maturase; Provisional 99.63
PRK14456368 ribosomal RNA large subunit methyltransferase N; P 99.57
PRK13745 412 anaerobic sulfatase-maturase; Provisional 99.57
COG2100414 Predicted Fe-S oxidoreductase [General function pr 99.51
PRK14459373 ribosomal RNA large subunit methyltransferase N; P 99.5
PRK13762322 tRNA-modifying enzyme; Provisional 99.49
COG0641378 AslB Arylsulfatase regulator (Fe-S oxidoreductase) 99.44
TIGR01290 442 nifB nitrogenase cofactor biosynthesis protein Nif 99.43
PRK14468343 ribosomal RNA large subunit methyltransferase N; P 99.37
PRK14460354 ribosomal RNA large subunit methyltransferase N; P 99.34
PRK14455356 ribosomal RNA large subunit methyltransferase N; P 99.33
TIGR00048355 radical SAM enzyme, Cfr family. A Staphylococcus s 99.32
PRK14466345 ribosomal RNA large subunit methyltransferase N; P 99.26
PRK14469343 ribosomal RNA large subunit methyltransferase N; P 99.24
PRK14470336 ribosomal RNA large subunit methyltransferase N; P 99.23
PRK09240371 thiH thiamine biosynthesis protein ThiH; Reviewed 99.21
PRK14463349 ribosomal RNA large subunit methyltransferase N; P 99.19
PRK14457345 ribosomal RNA large subunit methyltransferase N; P 99.17
PRK14462356 ribosomal RNA large subunit methyltransferase N; P 99.17
TIGR03278 404 methan_mark_10 putative methanogenesis marker prot 99.14
TIGR02493235 PFLA pyruvate formate-lyase 1-activating enzyme. A 99.14
PRK11145246 pflA pyruvate formate lyase-activating enzyme 1; P 99.12
PRK14453347 chloramphenicol/florfenicol resistance protein; Pr 99.1
TIGR02494295 PFLE_PFLC glycyl-radical enzyme activating protein 99.09
PRK07094323 biotin synthase; Provisional 99.08
PRK14461371 ribosomal RNA large subunit methyltransferase N; P 99.08
TIGR00433296 bioB biotin synthetase. Catalyzes the last step of 99.08
smart00729216 Elp3 Elongator protein 3, MiaB family, Radical SAM 99.08
PRK06256336 biotin synthase; Validated 99.04
PRK14454342 ribosomal RNA large subunit methyltransferase N; P 98.97
TIGR02351366 thiH thiazole biosynthesis protein ThiH. Members t 98.97
PRK14467348 ribosomal RNA large subunit methyltransferase N; P 98.96
PRK14465342 ribosomal RNA large subunit methyltransferase N; P 98.94
PRK11194372 ribosomal RNA large subunit methyltransferase N; P 98.91
PRK10076213 pyruvate formate lyase II activase; Provisional 98.87
COG0820349 Predicted Fe-S-cluster redox enzyme [General funct 98.85
PRK15108345 biotin synthase; Provisional 98.85
TIGR02495191 NrdG2 anaerobic ribonucleoside-triphosphate reduct 98.82
PRK14464344 ribosomal RNA large subunit methyltransferase N; P 98.81
TIGR00539360 hemN_rel putative oxygen-independent coproporphyri 98.81
PF04055166 Radical_SAM: Radical SAM superfamily; InterPro: IP 98.81
PLN02389379 biotin synthase 98.76
COG1964 475 Predicted Fe-S oxidoreductases [General function p 98.76
PRK05660378 HemN family oxidoreductase; Provisional 98.71
TIGR03822321 AblA_like_2 lysine-2,3-aminomutase-related protein 98.71
cd01335204 Radical_SAM Radical SAM superfamily. Enzymes of th 98.68
TIGR03821321 AblA_like_1 lysine-2,3-aminomutase-related protein 98.65
PRK08446350 coproporphyrinogen III oxidase; Provisional 98.59
PRK08599377 coproporphyrinogen III oxidase; Provisional 98.58
TIGR03279 433 cyano_FeS_chp putative FeS-containing Cyanobacteri 98.58
PRK05904353 coproporphyrinogen III oxidase; Provisional 98.54
TIGR00538 455 hemN oxygen-independent coproporphyrinogen III oxi 98.51
PRK05628375 coproporphyrinogen III oxidase; Validated 98.5
PRK08508279 biotin synthase; Provisional 98.49
TIGR01125430 MiaB-like tRNA modifying enzyme YliG, TIGR01125. T 98.47
PRK08207488 coproporphyrinogen III oxidase; Provisional 98.47
PRK05799374 coproporphyrinogen III oxidase; Provisional 98.46
PRK06267350 hypothetical protein; Provisional 98.45
PRK14862440 rimO ribosomal protein S12 methylthiotransferase; 98.4
PRK09249 453 coproporphyrinogen III oxidase; Provisional 98.4
PRK13347 453 coproporphyrinogen III oxidase; Provisional 98.37
TIGR00238331 KamA family protein. Note that the E. coli homolog 98.35
PRK08208 430 coproporphyrinogen III oxidase; Validated 98.35
COG0731296 Fe-S oxidoreductases [Energy production and conver 98.34
PRK14334440 (dimethylallyl)adenosine tRNA methylthiotransferas 98.31
TIGR01212302 radical SAM protein, TIGR01212 family. This unchar 98.31
COG1180260 PflA Pyruvate-formate lyase-activating enzyme [Pos 98.31
PRK06294370 coproporphyrinogen III oxidase; Provisional 98.29
TIGR03699340 mena_SCO4550 menaquinone biosynthesis protein, SCO 98.27
COG1625 414 Fe-S oxidoreductase, related to NifB/MoaA family [ 98.27
TIGR02026497 BchE magnesium-protoporphyrin IX monomethyl ester 98.26
TIGR03471472 HpnJ hopanoid biosynthesis associated radical SAM 98.26
TIGR03551343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 98.2
PRK07379 400 coproporphyrinogen III oxidase; Provisional 98.18
PLN02428349 lipoic acid synthase 98.13
PRK14338459 (dimethylallyl)adenosine tRNA methylthiotransferas 98.11
COG0502335 BioB Biotin synthase and related enzymes [Coenzyme 98.05
TIGR01579414 MiaB-like-C MiaB-like tRNA modifying enzyme. This 98.04
TIGR00089429 RNA modification enzyme, MiaB family. This subfami 98.02
PTZ00413398 lipoate synthase; Provisional 97.99
TIGR03820417 lys_2_3_AblA lysine-2,3-aminomutase. This model de 97.99
PRK08898394 coproporphyrinogen III oxidase; Provisional 97.98
PRK14331437 (dimethylallyl)adenosine tRNA methylthiotransferas 97.93
TIGR03700351 mena_SCO4494 putative menaquinone biosynthesis pro 97.92
PRK14325444 (dimethylallyl)adenosine tRNA methylthiotransferas 97.91
PRK09058 449 coproporphyrinogen III oxidase; Provisional 97.91
PRK14335455 (dimethylallyl)adenosine tRNA methylthiotransferas 97.9
TIGR00423309 radical SAM domain protein, CofH subfamily. This p 97.86
PRK06582 390 coproporphyrinogen III oxidase; Provisional 97.8
PRK09057380 coproporphyrinogen III oxidase; Provisional 97.79
TIGR01574438 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 97.77
TIGR01210313 conserved hypothetical protein TIGR01210. This fam 97.76
PRK14340445 (dimethylallyl)adenosine tRNA methylthiotransferas 97.75
PRK14339420 (dimethylallyl)adenosine tRNA methylthiotransferas 97.74
PRK14330434 (dimethylallyl)adenosine tRNA methylthiotransferas 97.72
TIGR00510302 lipA lipoate synthase. The family shows strong seq 97.72
PRK14332449 (dimethylallyl)adenosine tRNA methylthiotransferas 97.71
PRK14326502 (dimethylallyl)adenosine tRNA methylthiotransferas 97.7
TIGR01211 522 ELP3 histone acetyltransferase, ELP3 family. The S 97.69
COG1533297 SplB DNA repair photolyase [DNA replication, recom 97.64
PRK14327509 (dimethylallyl)adenosine tRNA methylthiotransferas 97.64
PRK14328439 (dimethylallyl)adenosine tRNA methylthiotransferas 97.64
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 97.62
PRK14329467 (dimethylallyl)adenosine tRNA methylthiotransferas 97.62
PRK14333448 (dimethylallyl)adenosine tRNA methylthiotransferas 97.6
TIGR01578420 MiaB-like-B MiaB-like tRNA modifying enzyme, archa 97.59
PRK14337446 (dimethylallyl)adenosine tRNA methylthiotransferas 97.59
PRK09613 469 thiH thiamine biosynthesis protein ThiH; Reviewed 97.56
PRK14336418 (dimethylallyl)adenosine tRNA methylthiotransferas 97.53
PRK12928290 lipoyl synthase; Provisional 97.47
COG0635416 HemN Coproporphyrinogen III oxidase and related Fe 97.39
PRK06245336 cofG FO synthase subunit 1; Reviewed 97.37
PRK08445348 hypothetical protein; Provisional 97.21
TIGR03550322 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav 97.2
PRK08444353 hypothetical protein; Provisional 97.2
PRK05926370 hypothetical protein; Provisional 97.16
PRK07360371 FO synthase subunit 2; Reviewed 97.16
COG1032490 Fe-S oxidoreductase [Energy production and convers 97.07
PRK05481289 lipoyl synthase; Provisional 96.97
PRK05927350 hypothetical protein; Provisional 96.27
COG2516339 Biotin synthase-related enzyme [General function p 96.23
PRK08629 433 coproporphyrinogen III oxidase; Provisional 96.08
COG5014228 Predicted Fe-S oxidoreductase [General function pr 95.97
COG1242312 Predicted Fe-S oxidoreductase [General function pr 95.66
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 95.24
COG0621437 MiaB 2-methylthioadenine synthetase [Translation, 95.14
COG1243 515 ELP3 Histone acetyltransferase [Transcription / Ch 94.98
COG2108353 Uncharacterized conserved protein related to pyruv 94.96
cd07944266 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- 94.87
PRK11858 378 aksA trans-homoaconitate synthase; Reviewed 94.78
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 94.53
PRK09234843 fbiC FO synthase; Reviewed 94.51
TIGR02090 363 LEU1_arch isopropylmalate/citramalate/homocitrate 94.46
COG1244358 Predicted Fe-S oxidoreductase [General function pr 94.45
COG0320306 LipA Lipoate synthase [Coenzyme metabolism] 94.37
PF1318664 SPASM: Iron-sulfur cluster-binding domain 93.98
cd07938274 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, 93.87
PF00682237 HMGL-like: HMGL-like of this family is not conserv 93.85
COG1509369 KamA Lysine 2,3-aminomutase [Amino acid transport 93.76
PRK00955620 hypothetical protein; Provisional 93.59
cd07945280 DRE_TIM_CMS Leptospira interrogans citramalate syn 93.59
PRK01254707 hypothetical protein; Provisional 92.81
PRK09234 843 fbiC FO synthase; Reviewed 92.69
PLN02746347 hydroxymethylglutaryl-CoA lyase 92.56
cd07941273 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 92.47
TIGR02660 365 nifV_homocitr homocitrate synthase NifV. This fami 92.23
PRK05692287 hydroxymethylglutaryl-CoA lyase; Provisional 91.96
cd07940268 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- 91.7
PRK08195337 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac 91.16
cd07937275 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar 90.63
COG1856275 Uncharacterized homolog of biotin synthetase [Func 90.62
cd07943263 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te 90.61
TIGR03217333 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. 90.14
KOG2900|consensus380 90.02
COG1060370 ThiH Thiamine biosynthesis enzyme ThiH and related 89.93
PRK00915 513 2-isopropylmalate synthase; Validated 89.14
PRK09389 488 (R)-citramalate synthase; Provisional 88.76
KOG0256|consensus 471 88.28
cd06543294 GH18_PF-ChiA-like PF-ChiA is an uncharacterized ch 86.55
TIGR03365238 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn 86.24
cd07947279 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt 85.5
PF10126110 Nit_Regul_Hom: Uncharacterized protein, homolog of 84.85
COG0826 347 Collagenase and related proteases [Posttranslation 83.2
cd07945280 DRE_TIM_CMS Leptospira interrogans citramalate syn 83.18
KOG1160|consensus601 81.86
PRK12344 524 putative alpha-isopropylmalate/homocitrate synthas 81.68
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.5e-44  Score=288.91  Aligned_cols=170  Identities=44%  Similarity=0.773  Sum_probs=156.7

Q ss_pred             ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052           1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI   80 (172)
Q Consensus         1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i   80 (172)
                      ||+|||++|||||||++|++|.+|++.+.+++|+++|+++.++|+.+||||+|+++|+|++||++|++|+++.|+.++||
T Consensus       107 Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfI  186 (322)
T COG2896         107 LKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFI  186 (322)
T ss_pred             HHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceEEE
Confidence            68999999999999999999999999889999999999999999977999999999999999999999999999999999


Q ss_pred             eeeeCCC-CCCCCCCCCCHHHHHHHHHHhCCCceeccCCCCCceeEEEeCCCCceEEEEcCCCCCcccCCCceeeccCCc
Q psy5052          81 EYMPFSG-NQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGS  159 (172)
Q Consensus        81 ~~~p~g~-~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~~G~  159 (172)
                      |+||+|. ..|..+.+++.+++.+.|.+.+. +.+.....++++.||...++. .||+|+|++++||.+|||+|+|+||+
T Consensus       187 E~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~a~~~~~~~~~-~ig~I~p~~~~FC~~CnR~Rlt~dGk  264 (322)
T COG2896         187 ELMPLGEGNSWRLDKYLSLDEILRKLEERAT-LLPVRKRLHGRAKYFIHPDGG-EIGFIAPVSNPFCATCNRLRLTADGK  264 (322)
T ss_pred             EEeecCcccchhhhccccHHHHHHHHHhhcc-ccccccccCCCceEEEeCCCc-EEEEEcCCCchhhhhcceeeeccCCe
Confidence            9999997 45777778999999999999774 555443557889999988765 99999999999999999999999999


Q ss_pred             EEecCCCCCcccC
Q psy5052         160 LKVCLFGNTEISL  172 (172)
Q Consensus       160 v~pC~~~~~~~~~  172 (172)
                      ++||+|.++++||
T Consensus       265 l~~CL~~~~~~dl  277 (322)
T COG2896         265 LKPCLFREDGIDL  277 (322)
T ss_pred             EEeccCCCcCcch
Confidence            9999999999885

>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional Back     alignment and domain information
>PLN02951 Molybderin biosynthesis protein CNX2 Back     alignment and domain information
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed Back     alignment and domain information
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial Back     alignment and domain information
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal Back     alignment and domain information
>KOG2876|consensus Back     alignment and domain information
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT) Back     alignment and domain information
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E Back     alignment and domain information
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional Back     alignment and domain information
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH Back     alignment and domain information
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only] Back     alignment and domain information
>PRK13758 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK13745 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK13762 tRNA-modifying enzyme; Provisional Back     alignment and domain information
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] Back     alignment and domain information
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB Back     alignment and domain information
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR00048 radical SAM enzyme, Cfr family Back     alignment and domain information
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 Back     alignment and domain information
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme Back     alignment and domain information
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional Back     alignment and domain information
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional Back     alignment and domain information
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family Back     alignment and domain information
>PRK07094 biotin synthase; Provisional Back     alignment and domain information
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR00433 bioB biotin synthetase Back     alignment and domain information
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM Back     alignment and domain information
>PRK06256 biotin synthase; Validated Back     alignment and domain information
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR02351 thiH thiazole biosynthesis protein ThiH Back     alignment and domain information
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK10076 pyruvate formate lyase II activase; Provisional Back     alignment and domain information
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] Back     alignment and domain information
>PRK15108 biotin synthase; Provisional Back     alignment and domain information
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation Back     alignment and domain information
>PLN02389 biotin synthase Back     alignment and domain information
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only] Back     alignment and domain information
>PRK05660 HemN family oxidoreductase; Provisional Back     alignment and domain information
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>cd01335 Radical_SAM Radical SAM superfamily Back     alignment and domain information
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>PRK08446 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08599 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase Back     alignment and domain information
>PRK05904 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>PRK05628 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>PRK08508 biotin synthase; Provisional Back     alignment and domain information
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 Back     alignment and domain information
>PRK08207 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK05799 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK06267 hypothetical protein; Provisional Back     alignment and domain information
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional Back     alignment and domain information
>PRK09249 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK13347 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR00238 KamA family protein Back     alignment and domain information
>PRK08208 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>COG0731 Fe-S oxidoreductases [Energy production and conversion] Back     alignment and domain information
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01212 radical SAM protein, TIGR01212 family Back     alignment and domain information
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06294 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family Back     alignment and domain information
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] Back     alignment and domain information
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase Back     alignment and domain information
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>PRK07379 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PLN02428 lipoic acid synthase Back     alignment and domain information
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] Back     alignment and domain information
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme Back     alignment and domain information
>TIGR00089 RNA modification enzyme, MiaB family Back     alignment and domain information
>PTZ00413 lipoate synthase; Provisional Back     alignment and domain information
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase Back     alignment and domain information
>PRK08898 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family Back     alignment and domain information
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK09058 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR00423 radical SAM domain protein, CofH subfamily Back     alignment and domain information
>PRK06582 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK09057 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB Back     alignment and domain information
>TIGR01210 conserved hypothetical protein TIGR01210 Back     alignment and domain information
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR00510 lipA lipoate synthase Back     alignment and domain information
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family Back     alignment and domain information
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type Back     alignment and domain information
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK12928 lipoyl synthase; Provisional Back     alignment and domain information
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] Back     alignment and domain information
>PRK06245 cofG FO synthase subunit 1; Reviewed Back     alignment and domain information
>PRK08445 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit Back     alignment and domain information
>PRK08444 hypothetical protein; Provisional Back     alignment and domain information
>PRK05926 hypothetical protein; Provisional Back     alignment and domain information
>PRK07360 FO synthase subunit 2; Reviewed Back     alignment and domain information
>COG1032 Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>PRK05481 lipoyl synthase; Provisional Back     alignment and domain information
>PRK05927 hypothetical protein; Provisional Back     alignment and domain information
>COG2516 Biotin synthase-related enzyme [General function prediction only] Back     alignment and domain information
>PRK08629 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] Back     alignment and domain information
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] Back     alignment and domain information
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PRK11858 aksA trans-homoaconitate synthase; Reviewed Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases Back     alignment and domain information
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>COG0320 LipA Lipoate synthase [Coenzyme metabolism] Back     alignment and domain information
>PF13186 SPASM: Iron-sulfur cluster-binding domain Back     alignment and domain information
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00955 hypothetical protein; Provisional Back     alignment and domain information
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PRK01254 hypothetical protein; Provisional Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>PLN02746 hydroxymethylglutaryl-CoA lyase Back     alignment and domain information
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>TIGR02660 nifV_homocitr homocitrate synthase NifV Back     alignment and domain information
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional Back     alignment and domain information
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated Back     alignment and domain information
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain Back     alignment and domain information
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] Back     alignment and domain information
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase Back     alignment and domain information
>KOG2900|consensus Back     alignment and domain information
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>PRK00915 2-isopropylmalate synthase; Validated Back     alignment and domain information
>PRK09389 (R)-citramalate synthase; Provisional Back     alignment and domain information
>KOG0256|consensus Back     alignment and domain information
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain Back     alignment and domain information
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE Back     alignment and domain information
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins Back     alignment and domain information
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>KOG1160|consensus Back     alignment and domain information
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
1tv7_A340 Structure Of The S-adenosylmethionine Dependent Enz 3e-23
2fb2_A340 Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT 1e-21
>pdb|1TV7|A Chain A, Structure Of The S-adenosylmethionine Dependent Enzyme Moaa Length = 340 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 96/169 (56%), Gaps = 5/169 (2%)
Query: 4   AGLDSINISLDTLKPDKYEFITRRK-GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDE 62
           AGL  IN+SLD +    ++ I  R    + +L  ID A  +G  N+KVNVV+ K  NDD+
Sbjct: 118 AGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL-NVKVNVVIQKGINDDQ 176
Query: 63  ILDFVLLTRDRPIDVRFIEYMPFSG-NQWNNTKIMPFSEMLTKIKEAHPDLLTLE-NAPN 120
           I+  +   +D+ I++RFIE+M     N W+ +K++   EMLT I E H ++  +E     
Sbjct: 177 IIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMI-EQHFEIDPVEPKYFG 235
Query: 121 DTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTE 169
           + +K Y+  +   Q G ITS+++ FC TC R RL +DG    CLF   +
Sbjct: 236 EVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVD 284
>pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT Length = 340 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
1tv8_A340 MOAA, molybdenum cofactor biosynthesis protein A; 5e-87
2z2u_A311 UPF0026 protein MJ0257; metal binding protein; 2.4 4e-08
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Length = 340 Back     alignment and structure
 Score =  257 bits (660), Expect = 5e-87
 Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 3/170 (1%)

Query: 2   KKAGLDSINISLDTLKPDKYEFITRRKG-WSRVLAGIDLAVQLGYDNLKVNVVVMKNFND 60
             AGL  IN+SLD +    ++ I  R    + +L  ID A  +G  N+KVNVV+ K  ND
Sbjct: 116 YDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL-NVKVNVVIQKGIND 174

Query: 61  DEILDFVLLTRDRPIDVRFIEYMPF-SGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAP 119
           D+I+  +   +D+ I++RFIE+M   + N W+ +K++   EMLT I++            
Sbjct: 175 DQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYF 234

Query: 120 NDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTE 169
            + +K Y+  +   Q G ITS+++ FC TC R RL +DG    CLF   +
Sbjct: 235 GEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVD 284
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Length = 311 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query172
1tv8_A340 MOAA, molybdenum cofactor biosynthesis protein A; 100.0
3can_A182 Pyruvate-formate lyase-activating enzyme; structur 99.48
2z2u_A311 UPF0026 protein MJ0257; metal binding protein; 2.4 99.37
2yx0_A342 Radical SAM enzyme; predicted tRNA modification en 99.34
3rfa_A404 Ribosomal RNA large subunit methyltransferase N; r 99.3
3c8f_A245 Pyruvate formate-lyase 1-activating enzyme; adoMet 99.22
3iix_A348 Biotin synthetase, putative; adoMet radical, SAM r 99.11
3t7v_A350 Methylornithine synthase PYLB; TIM-barrel fold, mu 99.02
2a5h_A416 L-lysine 2,3-aminomutase; radical SAM, four-iron-f 99.02
1r30_A369 Biotin synthase; SAM radical protein, TIM barrel, 99.02
2qgq_A304 Protein TM_1862; alpha-beta protein, structural ge 98.75
1olt_A 457 Oxygen-independent coproporphyrinogen III oxidase; 98.66
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 96.63
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 95.94
4fhd_A368 Spore photoproduct lyase; partial TIM-barrel, DNA 94.94
1ydo_A307 HMG-COA lyase; TIM-barrel protein, structural geno 91.69
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 91.48
3ble_A337 Citramalate synthase from leptospira interrogans; 91.21
3ewb_X293 2-isopropylmalate synthase; LEUA, structural genom 89.43
3eeg_A325 2-isopropylmalate synthase; 11106D, beta barrel, P 86.72
1hjs_A 332 Beta-1,4-galactanase; 4-galactanases, family 53 gl 86.38
3rmj_A 370 2-isopropylmalate synthase; LEUA, truncation, neis 86.22
3ivs_A 423 Homocitrate synthase, mitochondrial; TIM barrel, m 86.12
1nvm_A345 HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered 81.52
1ur4_A 399 Galactanase; hydrolase, beta-1, glycoside hydrolas 80.56
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-33  Score=231.05  Aligned_cols=170  Identities=35%  Similarity=0.619  Sum_probs=152.1

Q ss_pred             ChhcCCCeEEEeeeCCCHhhhccccCCC-CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052           1 YKKAGLDSINISLDTLKPDKYEFITRRK-GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRF   79 (172)
Q Consensus         1 L~~aGl~~v~iSlds~~~e~~~~i~g~~-~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~   79 (172)
                      |+++|++.|+|||||+++++|+++++.+ +|++++++|+.++++|+ ++++++|+++|.|++++.+++++++++|++++|
T Consensus       115 L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~-~v~i~~vv~~g~n~~ei~~~~~~~~~~g~~~~~  193 (340)
T 1tv8_A          115 LYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL-NVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRF  193 (340)
T ss_dssp             HHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC-EEEEEEEECTTTTGGGHHHHHHHHHHTTCCEEE
T ss_pred             HHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCC-CEEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEE
Confidence            5789999999999999999999999887 99999999999999999 899999999999999999999999999999999


Q ss_pred             EeeeeCCCC-CCCCCCCCCHHHHHHHHHHhCCCceec-cCCCCCceeEEEeCCCCceEEEEcCCCCCcccCCCceeeccC
Q psy5052          80 IEYMPFSGN-QWNNTKIMPFSEMLTKIKEAHPDLLTL-ENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMAD  157 (172)
Q Consensus        80 i~~~p~g~~-~~~~~~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~~  157 (172)
                      +++||++++ .|.....++.+|+++.|.+.+. +.+. .....+|+.+|++++..+.+|+|++.+.+||++|++++|+||
T Consensus       194 i~~~p~~~~~~~~~~~~~~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~d  272 (340)
T 1tv8_A          194 IEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFE-IDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSD  272 (340)
T ss_dssp             EECCCBCSSSSBCCSSCCCHHHHHHHHHHHSC-EEEECCSSTTCSSEEEEETTTCCEEEEECTTTSCCGGGCCEEEECTT
T ss_pred             EEeeEcCCCccchhhcCCCHHHHHHHHHhhCC-ccccccCCCCCCCeEEEECCCCeEEEEECCCCCccccCCCcEEECCC
Confidence            999999875 4665668899999999998885 3332 223457788999988778999999999999999999999999


Q ss_pred             CcEEecCCCC-CcccC
Q psy5052         158 GSLKVCLFGN-TEISL  172 (172)
Q Consensus       158 G~v~pC~~~~-~~~~~  172 (172)
                      |+++||++.+ +++||
T Consensus       273 G~v~pC~~~~~~~~~l  288 (340)
T 1tv8_A          273 GKFYGCLFATVDGFNV  288 (340)
T ss_dssp             SCEESSSCCSSCCCCH
T ss_pred             ccEEeCCCCCCCCcch
Confidence            9999999998 88774
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Back     alignment and structure
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* Back     alignment and structure
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Back     alignment and structure
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Back     alignment and structure
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Back     alignment and structure
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} Back     alignment and structure
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Back     alignment and structure
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Back     alignment and structure
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* Back     alignment and structure
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Back     alignment and structure
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* Back     alignment and structure
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Back     alignment and structure
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* Back     alignment and structure
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Back     alignment and structure
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 172
d1tv8a_327 c.1.28.3 (A:) Molybdenum cofactor biosynthesis pro 5e-25
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} Length = 327 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

 Score = 96.4 bits (238), Expect = 5e-25
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 1/169 (0%)

Query: 2   KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD 61
             AGL  IN+SLD +    ++ I  R   +  +            N+KVNVV+ K  NDD
Sbjct: 114 YDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDD 173

Query: 62  EILDFVLLTRDRPIDVRFIEYMPFS-GNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPN 120
           +I+  +   +D+ I++RFIE+M     N W+ +K++   EMLT I++             
Sbjct: 174 QIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFG 233

Query: 121 DTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTE 169
           + +K Y+  +   Q G ITS+++ FC TC R RL +DG    CLF   +
Sbjct: 234 EVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVD 282

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query172
d1tv8a_327 Molybdenum cofactor biosynthesis protein A MoaA {S 99.91
d1r30a_312 Biotin synthase {Escherichia coli [TaxId: 562]} 98.11
d1olta_ 441 Oxygen-independent coproporphyrinogen III oxidase 98.02
d1foba_ 334 Beta-1,4-galactanase {Fungus (Aspergillus aculeatu 91.93
d1hjsa_ 332 Beta-1,4-galactanase {Thielavia heterothallica, ak 88.29
d1ur4a_ 387 Beta-1,4-galactanase {Bacillus licheniformis [TaxI 85.02
d1h4pa_ 408 Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom 80.39
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.91  E-value=2.5e-23  Score=165.79  Aligned_cols=167  Identities=36%  Similarity=0.635  Sum_probs=138.6

Q ss_pred             ChhcCCCeEEEeeeCCCHhhhccccCC-CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052           1 YKKAGLDSINISLDTLKPDKYEFITRR-KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRF   79 (172)
Q Consensus         1 L~~aGl~~v~iSlds~~~e~~~~i~g~-~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~   79 (172)
                      |+++|++.|+||||+.++++|+.++|. +.|++++++++.+.++|+ ++.++++++++.|.+++.++++++..+++++.+
T Consensus       113 l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~g~-~~~~~~~v~~~~n~~~~~~~~~~~~~~~~~~~~  191 (327)
T d1tv8a_         113 LYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL-NVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRF  191 (327)
T ss_dssp             HHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC-EEEEEEEECTTTTGGGHHHHHHHHHHTTCCEEE
T ss_pred             HHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHHcCC-CcceeEEEecCccccccHHHHHHHHhhccccce
Confidence            468999999999999999999999985 589999999999999998 899999999999999999999999999999988


Q ss_pred             EeeeeCCCC-CCCCCCCCCHHHHHHHHHHhCCCceeccC-CCCCceeEEEeCCCCceEEEEcCCCCCcccCCCceeeccC
Q psy5052          80 IEYMPFSGN-QWNNTKIMPFSEMLTKIKEAHPDLLTLEN-APNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMAD  157 (172)
Q Consensus        80 i~~~p~g~~-~~~~~~~~~~~e~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~~  157 (172)
                      .++++.... .......++.++....++..+ .+.+... .......+|........++.+....+.+|++|++++|+||
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~I~~d  270 (327)
T d1tv8a_         192 IEFMDVGNDNGWDFSKVVTKDEMLTMIEQHF-EIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSD  270 (327)
T ss_dssp             EECCCBCSSSSBCCSSCCCHHHHHHHHHHHS-CEEEECCSSTTCSSEEEEETTTCCEEEEECTTTSCCGGGCCEEEECTT
T ss_pred             eeeecccCcccccccccccHHHHHHHHHHhc-ccccccccccccchhheeccccCcccceeccccccccCccCeEEEecC
Confidence            888776653 344455677888877777766 3544332 2334456676665557889999999999999999999999


Q ss_pred             CcEEecCCCCCc
Q psy5052         158 GSLKVCLFGNTE  169 (172)
Q Consensus       158 G~v~pC~~~~~~  169 (172)
                      |+|+||.|.+..
T Consensus       271 G~v~PC~~~~~~  282 (327)
T d1tv8a_         271 GKFYGCLFATVD  282 (327)
T ss_dssp             SCEESSSCCSSC
T ss_pred             ceEEeCCCCCcC
Confidence            999999887653
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} Back     information, alignment and structure
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure