Psyllid ID: psy5073

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMGYTAL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mqdyswipifsVCTIVAIFRigigpipwfmmAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVytrvpetknkSFEAIQAELAMGYTAL
Flexible Loop (DISEMBL)
MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMGYTAL
Low Complexity Region (SEG)
MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMGYTAL
Disordered region (IsUnstruct)
***YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK***FEAI***********
Disordered Region (DISOPRED)
*QDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELA******
Disordered Region (DISEMBL)
MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMGYTAL
Disordered Region (DISPRO)
MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAM*****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMGYTAL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.930	0.132	0.4	2e-21
B4MYA4	872	Facilitated trehalose tra	N/A	N/A	0.939	0.123	0.361	5e-21
B3MG58	866	Facilitated trehalose tra	N/A	N/A	0.895	0.118	0.378	1e-20
Q291H8	868	Facilitated trehalose tra	yes	N/A	0.930	0.123	0.390	2e-20
B4GAP7	869	Facilitated trehalose tra	N/A	N/A	0.930	0.123	0.390	2e-20
B4KR05	863	Facilitated trehalose tra	N/A	N/A	0.895	0.119	0.378	2e-20
Q7PIR5	793	Facilitated trehalose tra	no	N/A	0.939	0.136	0.361	3e-20
B4LPX5	911	Facilitated trehalose tra	N/A	N/A	0.895	0.113	0.378	4e-20
B4P624	856	Facilitated trehalose tra	N/A	N/A	0.895	0.120	0.368	4e-20
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.939	0.126	0.361	2e-19

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 69/110 (62%), Gaps = 3/110 (2%)

Query: 2   QDYS---WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV 58
           QD S   W+P+ +    V  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V
Sbjct: 677 QDVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFIV 736

Query: 59  SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           +K F D+I+ +G+  T+ + G IC +G  FV   VPET+ KS E I+ ++
Sbjct: 737 TKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPETQGKSLEDIERKM 786

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Aedes aegypti (taxid: 7159)

>sp|B4MYA4|TRET1_DROWI Facilitated trehalose transporter Tret1 OS=Drosophila willistoni GN=Tret1 PE=3 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 66/108 (61%)

Query: 1   MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSK 60
           + +  W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++W+C F+V+K
Sbjct: 745 VSNVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTK 804

Query: 61  VFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
            F D++D +GS   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 805 TFQDMLDVIGSYGAFWLFGAICFIGLFFVIIYVPETQGKTLEDIERKM 852

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila willistoni (taxid: 7260)

>sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 64/103 (62%)

Query: 6   WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65
           W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++W+C F+V+K F D+
Sbjct: 744 WLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKTFQDM 803

Query: 66  IDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           ID +G+   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 804 IDVMGAHGAFWLFGAICFIGLFFVILYVPETQGKTLEDIERKM 846

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila ananassae (taxid: 7217)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 3/110 (2%)

Query: 2   QDYS---WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV 58
           QD S   W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V
Sbjct: 739 QDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVV 798

Query: 59  SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           +K F D+ID +G+   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 799 TKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKM 848

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 3/110 (2%)

Query: 2   QDYS---WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV 58
           QD S   W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V
Sbjct: 740 QDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVV 799

Query: 59  SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           +K F D+ID +G+   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 800 TKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKM 849

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 64/103 (62%)

Query: 6   WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65
           W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V+K F D+
Sbjct: 741 WLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKSFQDM 800

Query: 66  IDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           ID +G+   + + G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 801 IDVMGAHGAFWMFGAICFVGLFFVIFYVPETQGKTLEDIERKM 843

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila mojavensis (taxid: 7230)

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 67/108 (62%)

Query: 1   MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSK 60
           + +  W+P+ +    V  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V+K
Sbjct: 666 VSEIGWLPLAAFVVFVVGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTK 725

Query: 61  VFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
            F D+  ++G+   + + G IC +G +FV   VPET+ KS E I+ ++
Sbjct: 726 TFADITASIGNHGAFWMFGSICIVGLLFVIVYVPETQGKSLEDIERKM 773

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Anopheles gambiae (taxid: 7165)

>sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 64/103 (62%)

Query: 6   WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65
           W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V+K F D+
Sbjct: 789 WLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKSFQDM 848

Query: 66  IDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           ID +G+   + + G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 849 IDFMGAHGAFWMFGAICFIGLFFVIFYVPETQGKTLEDIERKM 891

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila virilis (taxid: 7244)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/103 (36%), Positives = 64/103 (62%)

Query: 6   WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65
           W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++W+C F+V+K F DL
Sbjct: 734 WLPLTCFVVYILGFSVGFGPIPWLMMGEILPAKIRGAAASVATSFNWTCTFVVTKTFQDL 793

Query: 66  IDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           + ++G+   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 794 VGSLGAHGAFWLFGAICFVGLFFVILYVPETQGKTLEDIERKM 836

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 64/108 (59%)

Query: 1   MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSK 60
           + +  W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V+K
Sbjct: 729 VSNLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVTK 788

Query: 61  VFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
            F DL   +G+   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 789 TFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIERKM 836

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila erecta (taxid: 7220)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
157104959	806	sugar transporter [Aedes aegypti] gi|122	0.930	0.132	0.4	9e-20
195436302	872	GK22112 [Drosophila willistoni] gi|30068	0.939	0.123	0.361	2e-19
300681219	866	RecName: Full=Facilitated trehalose tran	0.895	0.118	0.378	5e-19
194755303	894	GF13114 [Drosophila ananassae] gi|190621	0.895	0.115	0.378	5e-19
158290261	491	AGAP003020-PA [Anopheles gambiae str. PE	0.947	0.221	0.403	6e-19
66558353	474	PREDICTED: facilitated trehalose transpo	0.904	0.219	0.461	6e-19
300681254	868	RecName: Full=Facilitated trehalose tran	0.930	0.123	0.390	7e-19
300681218	869	RecName: Full=Facilitated trehalose tran	0.930	0.123	0.390	7e-19
198457127	894	GA15593 [Drosophila pseudoobscura pseudo	0.930	0.119	0.390	7e-19
195150333	897	GL11419 [Drosophila persimilis] gi|19410	0.930	0.119	0.390	7e-19

>gi|157104959|ref|XP_001648649.1| sugar transporter [Aedes aegypti] gi|122069442|sp|Q17NV8.1|TRET1_AEDAE RecName: Full=Facilitated trehalose transporter Tret1 gi|108884141|gb|EAT48366.1| AAEL000567-PA [Aedes aegypti]

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 69/110 (62%), Gaps = 3/110 (2%)

Query: 2   QDYS---WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV 58
           QD S   W+P+ +    V  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V
Sbjct: 677 QDVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFIV 736

Query: 59  SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           +K F D+I+ +G+  T+ + G IC +G  FV   VPET+ KS E I+ ++
Sbjct: 737 TKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPETQGKSLEDIERKM 786

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195436302|ref|XP_002066107.1| GK22112 [Drosophila willistoni] gi|300681124|sp|B4MYA4.1|TRET1_DROWI RecName: Full=Facilitated trehalose transporter Tret1 gi|194162192|gb|EDW77093.1| GK22112 [Drosophila willistoni]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 66/108 (61%)

Query: 1   MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSK 60
           + +  W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++W+C F+V+K
Sbjct: 745 VSNVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTK 804

Query: 61  VFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
            F D++D +GS   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 805 TFQDMLDVIGSYGAFWLFGAICFIGLFFVIIYVPETQGKTLEDIERKM 852

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|300681219|sp|B3MG58.2|TRET1_DROAN RecName: Full=Facilitated trehalose transporter Tret1

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 64/103 (62%)

Query: 6   WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65
           W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++W+C F+V+K F D+
Sbjct: 744 WLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKTFQDM 803

Query: 66  IDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           ID +G+   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 804 IDVMGAHGAFWLFGAICFIGLFFVILYVPETQGKTLEDIERKM 846

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194755303|ref|XP_001959931.1| GF13114 [Drosophila ananassae] gi|190621229|gb|EDV36753.1| GF13114 [Drosophila ananassae]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 64/103 (62%)

Query: 6   WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65
           W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++W+C F+V+K F D+
Sbjct: 772 WLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKTFQDM 831

Query: 66  IDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           ID +G+   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 832 IDVMGAHGAFWLFGAICFIGLFFVILYVPETQGKTLEDIERKM 874

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158290261|ref|XP_311857.4| AGAP003020-PA [Anopheles gambiae str. PEST] gi|157017809|gb|EAA07901.5| AGAP003020-PA [Anopheles gambiae str. PEST]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 70/109 (64%)

Query: 1   MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSK 60
           +++  W+P+F++   V +F IG GP+PW M+ E+  ++ K  +SSL    S++  F+++K
Sbjct: 373 VENLEWLPVFALSLFVTMFSIGFGPVPWIMIGEVFAIDVKDLASSLATFTSYALSFMMTK 432

Query: 61  VFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELA 109
            F  L + +G A T+ L G  C LGA+FV+  VPETK K+F+ IQ  LA
Sbjct: 433 TFNPLRNGLGEAGTFWLFGGFCMLGAIFVFLFVPETKGKTFDQIQKRLA 481

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66558353|ref|XP_624322.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 3 [Apis mellifera] gi|328793858|ref|XP_003251935.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 1 [Apis mellifera] gi|328793861|ref|XP_003251936.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 2 [Apis mellifera]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 64/104 (61%)

Query: 5   SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMD 64
            W+P+ SVC  + +F +G GP+PW MM EI   E K  ++S    ++W  +F+V+K F D
Sbjct: 368 KWLPLVSVCIFIIMFNMGFGPLPWMMMGEIFAPEVKSVAASSACLFNWILVFIVTKFFSD 427

Query: 65  LIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           L  T+   AT+ L  VIC +G  FVY  VPETK KS E IQ EL
Sbjct: 428 LSKTIDLDATFWLFAVICLIGTFFVYFIVPETKGKSLEEIQREL 471

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|300681254|sp|Q291H8.3|TRET1_DROPS RecName: Full=Facilitated trehalose transporter Tret1

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 3/110 (2%)

Query: 2   QDYS---WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV 58
           QD S   W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V
Sbjct: 739 QDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVV 798

Query: 59  SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           +K F D+ID +G+   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 799 TKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKM 848

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|300681218|sp|B4GAP7.2|TRET1_DROPE RecName: Full=Facilitated trehalose transporter Tret1

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 3/110 (2%)

Query: 2   QDYS---WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV 58
           QD S   W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V
Sbjct: 740 QDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVV 799

Query: 59  SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           +K F D+ID +G+   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 800 TKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKM 849

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198457127|ref|XP_001360559.2| GA15593 [Drosophila pseudoobscura pseudoobscura] gi|198135870|gb|EAL25134.2| GA15593 [Drosophila pseudoobscura pseudoobscura]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 3/110 (2%)

Query: 2   QDYS---WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV 58
           QD S   W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V
Sbjct: 765 QDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVV 824

Query: 59  SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           +K F D+ID +G+   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 825 TKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKM 874

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195150333|ref|XP_002016109.1| GL11419 [Drosophila persimilis] gi|194109956|gb|EDW31999.1| GL11419 [Drosophila persimilis]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 3/110 (2%)

Query: 2   QDYS---WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV 58
           QD S   W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V
Sbjct: 768 QDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVV 827

Query: 59  SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
           +K F D+ID +G+   + L G IC +G  FV   VPET+ K+ E I+ ++
Sbjct: 828 TKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKM 877

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
UNIPROTKB|Q17NV8	806	Tret1 "Facilitated trehalose t	0.947	0.135	0.407	3.1e-19
UNIPROTKB|A9ZSY3	505	Tret1 "Facilitated trehalose t	0.939	0.213	0.416	3.1e-19
UNIPROTKB|B0WC46	517	Tret1 "Facilitated trehalose t	0.895	0.199	0.398	3.3e-19
UNIPROTKB|B4MYA4	872	Tret1 "Facilitated trehalose t	0.956	0.126	0.369	5.7e-19
FB|FBgn0036316	539	CG10960 [Drosophila melanogast	0.904	0.192	0.413	6.1e-19
UNIPROTKB|B3MG58	866	Tret1 "Facilitated trehalose t	0.913	0.121	0.386	1.9e-18
UNIPROTKB|B4QBN3	488	Tret1-2 "Facilitated trehalose	0.895	0.211	0.398	2.1e-18
UNIPROTKB|Q7PIR5	793	Tret1 "Facilitated trehalose t	0.956	0.138	0.369	2.2e-18
UNIPROTKB|A9ZSY2	502	Tret1 "Facilitated trehalose t	0.921	0.211	0.377	2.3e-18
UNIPROTKB|Q291H8	868	Tret1 "Facilitated trehalose t	0.947	0.125	0.398	2.5e-18

UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)]

 Score = 241 (89.9 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 46/113 (40%), Positives = 71/113 (62%)

Query:     2 QDYS---WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV 58
             QD S   W+P+ +    V  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V
Sbjct:   677 QDVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFIV 736

Query:    59 SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMG 111
             +K F D+I+ +G+  T+ + G IC +G  FV   VPET+ KS E I+ ++ MG
Sbjct:   737 TKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPETQGKSLEDIERKM-MG 788

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)]

 Score = 237 (88.5 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 45/108 (41%), Positives = 65/108 (60%)

Query:     4 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFM 63
             Y W+P+  +   V  F IG GPIPW M+ EI+P + +  ++SL   ++W+C F+V+K F 
Sbjct:   383 YGWLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQ 442

Query:    64 DLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMG 111
             ++ID +    T  L  VIC  G +FV   VPETK KS E I+ +L  G
Sbjct:   443 NIIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEMKLTSG 490

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)]

 Score = 237 (88.5 bits), Expect = 3.3e-19, P = 3.3e-19
 Identities = 41/103 (39%), Positives = 66/103 (64%)

Query:     6 WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65
             W+P+ S    V  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V+K F D+
Sbjct:   395 WLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADI 454

Query:    66 IDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
             I ++G+   + + G +C +G VFV   VPET+ KS E I+ ++
Sbjct:   455 IASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKSLEDIERKM 497

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|B4MYA4 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila willistoni (taxid:7260)]

 Score = 239 (89.2 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 41/111 (36%), Positives = 68/111 (61%)

Query:     1 MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSK 60
             + +  W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++W+C F+V+K
Sbjct:   745 VSNVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTK 804

Query:    61 VFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMG 111
              F D++D +GS   + L G IC +G  FV   VPET+ K+ E I+ ++ MG
Sbjct:   805 TFQDMLDVIGSYGAFWLFGAICFIGLFFVIIYVPETQGKTLEDIERKM-MG 854

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)]

 Score = 235 (87.8 bits), Expect = 6.1e-19, P = 6.1e-19
 Identities = 43/104 (41%), Positives = 63/104 (60%)

Query:     6 WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65
             W+P+ S+C  + +F IG GP+PW MM E+   + K ++ SL    +W   F+V+K F++L
Sbjct:   423 WLPVASLCLFIIMFSIGYGPVPWLMMGELFATDIKGFAGSLAGTSNWLLAFVVTKTFVNL 482

Query:    66 IDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELA 109
              D +G   T+ L   +  +G +FVY  VPETK KS   IQ ELA
Sbjct:   483 NDGLGIGGTFWLFAGLTVVGVIFVYFAVPETKGKSLNEIQQELA 526

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

UNIPROTKB|B3MG58 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila ananassae (taxid:7217)]

 Score = 234 (87.4 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 41/106 (38%), Positives = 66/106 (62%)

Query:     6 WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65
             W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++W+C F+V+K F D+
Sbjct:   744 WLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKTFQDM 803

Query:    66 IDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMG 111
             ID +G+   + L G IC +G  FV   VPET+ K+ E I+ ++ MG
Sbjct:   804 IDVMGAHGAFWLFGAICFIGLFFVILYVPETQGKTLEDIERKM-MG 848

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)]

 Score = 229 (85.7 bits), Expect = 2.1e-18, P = 2.1e-18
 Identities = 43/108 (39%), Positives = 68/108 (62%)

Query:     6 WIPIFSVCTIVAI--FRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFM 63
             W+P+   C ++ I  F +G GPIPW MM EI+P + +  ++S++  ++W C F+V+K F 
Sbjct:   367 WLPL--TCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQ 424

Query:    64 DLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMG 111
             DL   +G+   + L GV+C +G  FV   VPET+ KS E I+ ++ MG
Sbjct:   425 DLTVAMGAHGAFWLFGVVCIVGLFFVIICVPETRGKSLEEIERKM-MG 471

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)]

 Score = 233 (87.1 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 41/111 (36%), Positives = 69/111 (62%)

Query:     1 MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSK 60
             + +  W+P+ +    V  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V+K
Sbjct:   666 VSEIGWLPLAAFVVFVVGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTK 725

Query:    61 VFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMG 111
              F D+  ++G+   + + G IC +G +FV   VPET+ KS E I+ ++ MG
Sbjct:   726 TFADITASIGNHGAFWMFGSICIVGLLFVIVYVPETQGKSLEDIERKM-MG 775

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)]

 Score = 229 (85.7 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 40/106 (37%), Positives = 64/106 (60%)

Query:     4 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFM 63
             + WIP+ S+   V  F  G GPIPW MM EI+P++ +  ++S+   ++WSC F+V+K + 
Sbjct:   378 FGWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASVATAFNWSCTFVVTKTYE 437

Query:    64 DLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELA 109
             DL+  +G   T+ L G +  +  +FV   VPET+ +S E I+   A
Sbjct:   438 DLVLHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIERRFA 483

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|Q291H8 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 233 (87.1 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 45/113 (39%), Positives = 69/113 (61%)

Query:     2 QDYS---WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV 58
             QD S   W+P+      +  F +G GPIPW MM EI+P + +  ++S+   ++WSC F+V
Sbjct:   739 QDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVV 798

Query:    59 SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMG 111
             +K F D+ID +G+   + L G IC +G  FV   VPET+ K+ E I+ ++ MG
Sbjct:   799 TKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKM-MG 850

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	115
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-12
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-10
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	8e-10

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 30/100 (30%), Positives = 55/100 (55%)

Query: 5   SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMD 64
             + I  +   +A F +G GP+PW +++EI PL  +    S+ +  +W   F+V  +F  
Sbjct: 382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT 441

Query: 65  LIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAI 104
           +++++G    +   G +  LG +FVY  +PETK ++ E I
Sbjct: 442 MLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 7   IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF--MD 64
           + + S+   VA F +  GP+ W +++EI P   +  + ++ +   W   + VS  F  MD
Sbjct: 365 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424

Query: 65  ----LIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFE 102
               L+    +  +Y + G +  L A+F++  VPETK K+ E
Sbjct: 425 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 466

Length = 479

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 7   IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI 66
           + I  +   +A F +G GP+PW +++E+ PL  +  + ++    +W   FL+  +F  + 
Sbjct: 349 VAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIIT 408

Query: 67  DTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
             +G    + +   +  L  +FV+  VPETK ++ E I    
Sbjct: 409 GAIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG0569|consensus	485		99.74
KOG0254|consensus	513		99.54
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.47
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.47
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.45
KOG0252|consensus	538		99.3
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.16
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.05
TIGR00893	399	2A0114 d-galactonate transporter.	98.92
TIGR00898	505	2A0119 cation transport protein.	98.9
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.88
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.86
PRK10489	417	enterobactin exporter EntS; Provisional	98.85
PRK10642	490	proline/glycine betaine transporter; Provisional	98.84
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.82
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.81
PRK03545	390	putative arabinose transporter; Provisional	98.81
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.8
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.76
KOG0253|consensus	528		98.76
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.75
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.74
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.73
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.72
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.71
TIGR00900	365	2A0121 H+ Antiporter protein.	98.7
PRK11663	434	regulatory protein UhpC; Provisional	98.69
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.68
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.67
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.67
PRK10091	382	MFS transport protein AraJ; Provisional	98.66
TIGR00895	398	2A0115 benzoate transport.	98.65
TIGR00901	356	2A0125 AmpG-related permease.	98.65
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.64
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.64
PRK11663	434	regulatory protein UhpC; Provisional	98.61
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.61
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.59
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.58
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.53
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.52
PRK09874	408	drug efflux system protein MdtG; Provisional	98.51
TIGR00891	405	2A0112 putative sialic acid transporter.	98.49
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.48
KOG2532|consensus	466		98.47
PRK10054	395	putative transporter; Provisional	98.46
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.46
PRK12307	426	putative sialic acid transporter; Provisional	98.46
PRK11010	491	ampG muropeptide transporter; Validated	98.45
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.44
PRK10504	471	putative transporter; Provisional	98.44
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.43
KOG0255|consensus	521		98.43
PLN00028	476	nitrate transmembrane transporter; Provisional	98.43
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.41
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.37
PRK05122	399	major facilitator superfamily transporter; Provisi	98.36
PRK11902	402	ampG muropeptide transporter; Reviewed	98.35
PRK09952	438	shikimate transporter; Provisional	98.35
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.34
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.33
PRK03893	496	putative sialic acid transporter; Provisional	98.33
TIGR00898	505	2A0119 cation transport protein.	98.32
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.31
TIGR00893	399	2A0114 d-galactonate transporter.	98.31
PRK11043	401	putative transporter; Provisional	98.3
PRK10642	490	proline/glycine betaine transporter; Provisional	98.3
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.27
PRK15075	434	citrate-proton symporter; Provisional	98.26
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.26
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.26
PRK12382	392	putative transporter; Provisional	98.26
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.25
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.25
PRK12307	426	putative sialic acid transporter; Provisional	98.24
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.24
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.23
PRK03893	496	putative sialic acid transporter; Provisional	98.22
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.21
KOG0255|consensus	521		98.21
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.21
KOG2533|consensus	495		98.18
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.17
PRK10489	417	enterobactin exporter EntS; Provisional	98.16
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.16
PRK15075	434	citrate-proton symporter; Provisional	98.15
PRK15011	393	sugar efflux transporter B; Provisional	98.15
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.14
PRK09952	438	shikimate transporter; Provisional	98.14
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.09
PRK03699	394	putative transporter; Provisional	98.09
KOG1330|consensus	493		98.08
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.07
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.06
PRK09528	420	lacY galactoside permease; Reviewed	98.06
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.05
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.03
PRK09705	393	cynX putative cyanate transporter; Provisional	98.02
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.02
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.02
TIGR00805	633	oat sodium-independent organic anion transporter.	98.01
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.99
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.99
PRK03545	390	putative arabinose transporter; Provisional	97.98
PRK09874	408	drug efflux system protein MdtG; Provisional	97.96
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.93
PRK15011	393	sugar efflux transporter B; Provisional	97.93
PRK12382	392	putative transporter; Provisional	97.92
PRK09705	393	cynX putative cyanate transporter; Provisional	97.91
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.89
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.89
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.86
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.85
PRK05122	399	major facilitator superfamily transporter; Provisi	97.84
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.79
TIGR00891	405	2A0112 putative sialic acid transporter.	97.77
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.76
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.75
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.74
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.72
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.72
PTZ00207	591	hypothetical protein; Provisional	97.7
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.67
PRK03633	381	putative MFS family transporter protein; Provision	97.63
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.61
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.59
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.58
KOG2615|consensus	451		97.55
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.54
PRK09669	444	putative symporter YagG; Provisional	97.53
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.53
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.5
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.5
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.47
PRK11010	491	ampG muropeptide transporter; Validated	97.44
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.43
KOG0254|consensus	513		97.42
PRK11462	460	putative transporter; Provisional	97.38
PF13347	428	MFS_2: MFS/sugar transport protein	97.35
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.33
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.32
PRK10504	471	putative transporter; Provisional	97.29
KOG3764|consensus	464		97.25
TIGR00900	365	2A0121 H+ Antiporter protein.	97.1
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.08
PRK03633	381	putative MFS family transporter protein; Provision	97.07
PRK03699	394	putative transporter; Provisional	97.07
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.05
PRK10054	395	putative transporter; Provisional	97.05
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.05
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.02
KOG2816|consensus	463		96.99
KOG2504|consensus	509		96.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.96
KOG0253|consensus	528		96.84
PRK10133	438	L-fucose transporter; Provisional	96.83
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.81
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	96.81
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.79
TIGR00895	398	2A0115 benzoate transport.	96.79
PRK10091	382	MFS transport protein AraJ; Provisional	96.78
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.78
PLN00028	476	nitrate transmembrane transporter; Provisional	96.77
KOG0569|consensus	485		96.75
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	96.68
COG2211	467	MelB Na+/melibiose symporter and related transport	96.67
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.58
PRK10429	473	melibiose:sodium symporter; Provisional	96.58
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.54
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.52
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.46
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.39
KOG3762|consensus	618		96.39
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	96.32
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	96.31
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.28
PRK09528	420	lacY galactoside permease; Reviewed	96.27
PRK11902	402	ampG muropeptide transporter; Reviewed	96.26
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.21
PRK09669	444	putative symporter YagG; Provisional	96.16
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.13
PRK09848	448	glucuronide transporter; Provisional	96.13
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.96
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.62
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	95.6
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	95.55
PRK10213	394	nepI ribonucleoside transporter; Reviewed	95.37
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	95.36
PRK11043	401	putative transporter; Provisional	95.17
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.07
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.06
PRK11195	393	lysophospholipid transporter LplT; Provisional	95.02
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	94.94
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	94.87
KOG2504|consensus	509		94.85
PRK11462	460	putative transporter; Provisional	94.76
PRK10429	473	melibiose:sodium symporter; Provisional	94.7
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	94.5
KOG4686|consensus	459		94.27
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	94.27
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	94.23
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	94.17
PRK10473	392	multidrug efflux system protein MdtL; Provisional	94.1
PRK15403	413	multidrug efflux system protein MdtM; Provisional	94.07
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	93.65
PRK11652	394	emrD multidrug resistance protein D; Provisional	93.62
PRK10207	489	dipeptide/tripeptide permease B; Provisional	93.6
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	93.34
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	93.26
PRK15462	493	dipeptide/tripeptide permease D; Provisional	92.98
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.97
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	92.27
KOG2532|consensus	466		92.26
KOG2325|consensus	488		92.1
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	91.51
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	91.48
PRK09848	448	glucuronide transporter; Provisional	91.47
COG2211	467	MelB Na+/melibiose symporter and related transport	89.48
TIGR00901	356	2A0125 AmpG-related permease.	89.1
KOG0252|consensus	538		88.48
COG0861	254	TerC Membrane protein TerC, possibly involved in t	88.16
PRK10133	438	L-fucose transporter; Provisional	87.55
PRK14995	495	methyl viologen resistance protein SmvA; Provision	87.22
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	86.87
PTZ00207	591	hypothetical protein; Provisional	86.29
TIGR00896	355	CynX cyanate transporter. This family of proteins	85.56
PF10183	105	ESSS: ESSS subunit of NADH:ubiquinone oxidoreducta	85.54
KOG2563|consensus	480		84.83
KOG3626|consensus	735		84.71
KOG3626|consensus	735		83.32
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	82.98
PF03741	183	TerC: Integral membrane protein TerC family; Inter	80.96
KOG1330|consensus	493		80.35

>KOG0569|consensus

Probab=99.74  E-value=5.6e-17  Score=116.20  Aligned_cols=105  Identities=29%  Similarity=0.520  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy5073           6 WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLG   85 (115)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (115)
                      +..+.+.+++.+.++.|+||++|.+.+|+||++.|+.++++....+|+..++....++.+.+..|. ..|.++.+.+++.
T Consensus       368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~  446 (485)
T KOG0569|consen  368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIF  446 (485)
T ss_pred             HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence            345788889999999999999999999999999999999999999999999999999999999997 7999999999999


Q ss_pred             HHHHHhhcccCCCCCHHHHHHHHhcc
Q psy5073          86 AVFVYTRVPETKNKSFEAIQAELAMG  111 (115)
Q Consensus        86 ~~~~~~~~pet~~~~~~~~~~~~~~~  111 (115)
                      .++.++++||||+|+.+|+.++++++
T Consensus       447 ~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  447 LIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            99999999999999999998888765

>KOG0254|consensus

Probab=99.54  E-value=1.9e-13  Score=99.13  Aligned_cols=108  Identities=35%  Similarity=0.716  Sum_probs=96.5

Q ss_pred             cchHHHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q psy5073           4 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICT   83 (115)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (115)
                      ..+..+.+.+++...++.+.+|++|.+.+|+||.+.|+++.+++...+|...++....++.+....+....|..+..++.
T Consensus       393 ~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~  472 (513)
T KOG0254|consen  393 AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICL  472 (513)
T ss_pred             hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            35678888899999999999999999999999999999999999999999999999999999888764568888888888


Q ss_pred             HHHH-HHHhhcccCCCCCHHHHHHHHhcc
Q psy5073          84 LGAV-FVYTRVPETKNKSFEAIQAELAMG  111 (115)
Q Consensus        84 ~~~~-~~~~~~pet~~~~~~~~~~~~~~~  111 (115)
                      +... +.+++.||||+++++|+++.+.++
T Consensus       473 ~~~~~fv~~~~pETkg~sleei~~~~~~~  501 (513)
T KOG0254|consen  473 LSLIIFVFFFVPETKGLTLEEINELFEEG  501 (513)
T ss_pred             HHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence            8877 788999999999999999887664

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.47  E-value=2.1e-12  Score=92.28  Aligned_cols=103  Identities=26%  Similarity=0.440  Sum_probs=83.6

Q ss_pred             HHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhchhHHHHHHHHHHHH
Q psy5073          11 SVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI------DTVGSAATYGLLGVICTL   84 (115)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~   84 (115)
                      ++.++.+.+..+.+|..+.+++|.+|++.|++++|+.....+++.++++.+++.+.      +..++.+.|.++++++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL  448 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence            44444445555566888889999999999999999999999999999988887654      456777788888888888


Q ss_pred             HHHHHHhhcccCCCCCHHHHHHHHhcccc
Q psy5073          85 GAVFVYTRVPETKNKSFEAIQAELAMGYT  113 (115)
Q Consensus        85 ~~~~~~~~~pet~~~~~~~~~~~~~~~~~  113 (115)
                      ..++.+++.||||+++.+|.++.++++.+
T Consensus       449 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  477 (479)
T PRK10077        449 AALFMWKFVPETKGKTLEEMEALWEPETK  477 (479)
T ss_pred             HHHHHHhccccCCCCCHHHHHHHHhhccc
Confidence            88888788999999999998888766544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.47  E-value=9.4e-16  Score=108.84  Aligned_cols=102  Identities=27%  Similarity=0.543  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q psy5073           7 IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGA   86 (115)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (115)
                      ..+++.+++...++.++++.++.+.+|+||++.|+++.|++...+++++++.+.+.+.+.+..+....+.+++..+++..
T Consensus       350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~  429 (451)
T PF00083_consen  350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAI  429 (451)
T ss_pred             ccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHH
Confidence            34455556666778889999999999999999999999999999999999999999999888774468888888888888


Q ss_pred             HHHHhhcccCCCCCHHHHHHHH
Q psy5073          87 VFVYTRVPETKNKSFEAIQAEL  108 (115)
Q Consensus        87 ~~~~~~~pet~~~~~~~~~~~~  108 (115)
                      ++.++++||||+++++|++++|
T Consensus       430 i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  430 IFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             hheeEEEeeCCCCCHHHHHhhC
Confidence            8989999999999999998864

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.45  E-value=7.5e-13  Score=95.69  Aligned_cols=89  Identities=17%  Similarity=0.220  Sum_probs=73.6

Q ss_pred             HHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------chhHHHHHHHHHHHHHH
Q psy5073          17 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV----------GSAATYGLLGVICTLGA   86 (115)
Q Consensus        17 ~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~   86 (115)
                      ++++.+.++..+.+.+|++|++.|+++.|+....+++++++++.+.+++.+..          +....+++++++.++..
T Consensus       403 ~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  482 (502)
T TIGR00887       403 FFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGI  482 (502)
T ss_pred             HHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHH
Confidence            34566778888888999999999999999999999999999999999998743          33456788887777665


Q ss_pred             HHHHhhcccCCCCCHHHHHH
Q psy5073          87 VFVYTRVPETKNKSFEAIQA  106 (115)
Q Consensus        87 ~~~~~~~pet~~~~~~~~~~  106 (115)
                      +. .+++|||+++++||+|+
T Consensus       483 i~-~~~lpEt~~~~leei~~  501 (502)
T TIGR00887       483 LF-TLLIPETKGKSLEELSG  501 (502)
T ss_pred             HH-heEeccCCCCCHHhhhC
Confidence            54 46789999999988765

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0252|consensus

Probab=99.30  E-value=4e-12  Score=90.40  Aligned_cols=100  Identities=22%  Similarity=0.261  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhchhHHHHHHHHHHH
Q psy5073           9 IFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-----TVGSAATYGLLGVICT   83 (115)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   83 (115)
                      +++..+..++.+.|++....++.+|.||++.|+++-|++.+.+-.+++++...+.++.+     ..+.++++++++..+.
T Consensus       409 ~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~  488 (538)
T KOG0252|consen  409 VVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCML  488 (538)
T ss_pred             eehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHH
Confidence            34556667788899999999999999999999999999999999999999999999999     7788889999998877


Q ss_pred             HHHHHHHhhcccCCCCCHHHHHHHHh
Q psy5073          84 LGAVFVYTRVPETKNKSFEAIQAELA  109 (115)
Q Consensus        84 ~~~~~~~~~~pet~~~~~~~~~~~~~  109 (115)
                      +..+. .+++|||++++++|++++..
T Consensus       489 ~gi~~-T~l~pEtk~~~leei~~e~~  513 (538)
T KOG0252|consen  489 LGILF-TLLIPETKGKSLEEISNEEE  513 (538)
T ss_pred             HhHhe-eEEeecccccCHHHhcChhh
Confidence            77555 57899999999999865543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.16  E-value=3.9e-10  Score=79.63  Aligned_cols=96  Identities=30%  Similarity=0.680  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q psy5073           8 PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAV   87 (115)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (115)
                      .+....++...++.+..+....+.+|.+|++.|++++++......+++++.+.+.+.+.+..+|++.|++.++++++..+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i  464 (481)
T TIGR00879       385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLI  464 (481)
T ss_pred             HHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHH
Confidence            33444555556677777888888899999999999999999999999999999999999988998889988888888888


Q ss_pred             HHHhhcccCCCCCHHH
Q psy5073          88 FVYTRVPETKNKSFEA  103 (115)
Q Consensus        88 ~~~~~~pet~~~~~~~  103 (115)
                      ...++.||+++++.+|
T Consensus       465 ~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       465 FVYFFLPETKGRTLEE  480 (481)
T ss_pred             HHheecccCCCCChhh
Confidence            8878889998876543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.05  E-value=2.3e-09  Score=81.12  Aligned_cols=79  Identities=14%  Similarity=0.186  Sum_probs=62.5

Q ss_pred             hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073          21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKS  100 (115)
Q Consensus        21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  100 (115)
                      .+..+..+.+++|++|++.|++++|+....+.++++++|.+.+.+.+.. ....|.+.+++.++..++. .++|||+++.
T Consensus       663 ~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~ll~-~~LPET~~~~  740 (742)
T TIGR01299       663 IAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGLLA-LKLPDTRGQV  740 (742)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHH-HhCCCCcccc
Confidence            3445667788999999999999999999999999999999999887653 3456777777666655554 4679999875


Q ss_pred             H
Q psy5073         101 F  101 (115)
Q Consensus       101 ~  101 (115)
                      +
T Consensus       741 l  741 (742)
T TIGR01299       741 L  741 (742)
T ss_pred             c
Confidence            3

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.92  E-value=1.9e-08  Score=69.28  Aligned_cols=79  Identities=10%  Similarity=0.036  Sum_probs=66.1

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      .....+....+++|.+|+|.|+++.++......++..+++.+.+.+.+..+|++.|.+.++..++..+...+..||+++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893        96 EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            3344566667899999999999999999999999999999999999999999999998888777777766666777543

>TIGR00898 2A0119 cation transport protein

Probab=98.90  E-value=1.3e-08  Score=73.55  Aligned_cols=78  Identities=14%  Similarity=0.127  Sum_probs=61.6

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFE  102 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~  102 (115)
                      ..+..+.+.+|.+|++.|++++|+......+++.++|.+.. + ...++...+.+++...++..++ .+++|||++++++
T Consensus       427 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~~l~  503 (505)
T TIGR00898       427 AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGIL-TLFLPETKGVPLP  503 (505)
T ss_pred             HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCCCCCC
Confidence            34566678999999999999999999999999999999988 3 4445556777777766666555 4578999998765


Q ss_pred             H
Q psy5073         103 A  103 (115)
Q Consensus       103 ~  103 (115)
                      |
T Consensus       504 ~  504 (505)
T TIGR00898       504 E  504 (505)
T ss_pred             C
Confidence            3

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.88  E-value=3.8e-08  Score=58.71  Aligned_cols=74  Identities=18%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ..+....++.|.+|++.|+++.++......++..+++.+.+.+.+..+|++.+.+.+....+..+...+..||+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        68 ALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            34566678899999999999999999999999999999999999888998888888888777777777777764

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.86  E-value=8.7e-08  Score=67.29  Aligned_cols=71  Identities=14%  Similarity=0.122  Sum_probs=63.4

Q ss_pred             hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      .....+|.+|+|.|++++++......++..+++.+.+.+.+..|||+.|.+.+++.++..++..+.+||.+
T Consensus        99 ~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903        99 AFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34556899999999999999999999999999999999999999999999988888888888888889854

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.85  E-value=1.7e-08  Score=71.42  Aligned_cols=83  Identities=10%  Similarity=-0.003  Sum_probs=71.9

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHH
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAI  104 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~  104 (115)
                      +....++.|..|++.|+++.|+......++..+++.+.+.+.+..|....+...+...++...+.....||+|+++.+|+
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (417)
T PRK10489        331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP  410 (417)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence            44456789999999999999999999999999999999999999898888888888777777777788899999988887


Q ss_pred             HHH
Q psy5073         105 QAE  107 (115)
Q Consensus       105 ~~~  107 (115)
                      +++
T Consensus       411 ~~~  413 (417)
T PRK10489        411 EVD  413 (417)
T ss_pred             cCC
Confidence            553

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.84  E-value=2.1e-08  Score=72.55  Aligned_cols=74  Identities=14%  Similarity=0.090  Sum_probs=54.0

Q ss_pred             hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q psy5073          27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTRVPETKNKSF  101 (115)
Q Consensus        27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  101 (115)
                      ...+.+|++|++.|++++|+.+..+..++.+.|.+.+++.+..+ |...++...+..++..+ ..+++||+++..+
T Consensus       363 ~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~  437 (490)
T PRK10642        363 MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCCC
Confidence            44568899999999999999888888889999999999887654 54455544444444433 4456799866433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.82  E-value=1.3e-07  Score=67.17  Aligned_cols=77  Identities=13%  Similarity=0.065  Sum_probs=64.2

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID------TVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      +..|....+++|.+|++.|++++++......++..+++.+.+++.+      ..||++.|.+.++..++..++..+++||
T Consensus       112 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~  191 (412)
T TIGR02332       112 GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD  191 (412)
T ss_pred             hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence            3445555678999999999999999999989999999999888875      2589999999888888777777778888


Q ss_pred             CCC
Q psy5073          96 TKN   98 (115)
Q Consensus        96 t~~   98 (115)
                      +++
T Consensus       192 ~p~  194 (412)
T TIGR02332       192 SPD  194 (412)
T ss_pred             Ccc
Confidence            754

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.81  E-value=6.5e-08  Score=68.38  Aligned_cols=75  Identities=16%  Similarity=0.094  Sum_probs=69.5

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      .....++...+.+|+.|++.|++++++......+...++..++.++-+..|||++|+..+.+.++..+.....+|
T Consensus       115 ~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         115 HGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            334557777889999999999999999999999999999999999999999999999999999999999999999

>PRK03545 putative arabinose transporter; Provisional

Probab=98.81  E-value=1.1e-07  Score=66.70  Aligned_cols=74  Identities=15%  Similarity=0.043  Sum_probs=63.3

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      .+....+++|.+|++.|++++|+......++..++|.+...+.+..+|++.|++.+.+.++..+...+..||.+
T Consensus       115 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        115 WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            35555678999999999999999999999999999999999989899999999998888777666666677653

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.80  E-value=2e-07  Score=66.18  Aligned_cols=75  Identities=11%  Similarity=0.109  Sum_probs=63.7

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      .+..+.++.|.+|++.|.+.+++......++..++|.+++.+.+..+|++.|++.++..++..++..+..||+++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        122 ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            344556789999999999999999999999999999999999888899999999988877776666667898743

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.76  E-value=1.2e-07  Score=65.81  Aligned_cols=76  Identities=17%  Similarity=0.086  Sum_probs=64.3

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNK   99 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   99 (115)
                      .+....++.|.+|++.|++..++......++..+++.+.+.+.+..+|++.+.+.++..++..+...+..||++.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       111 SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            3455568899999999999999999999999999999999999989999999888887777777766777886543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG0253|consensus

Probab=98.76  E-value=1.8e-08  Score=70.77  Aligned_cols=80  Identities=13%  Similarity=0.107  Sum_probs=64.5

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNK   99 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   99 (115)
                      ..+...+.++|.+|.||+..|++|.|.++.++++++++.|.+.  +....+......+++...++..+.+.++=-||||+
T Consensus       448 isg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR  525 (528)
T KOG0253|consen  448 ISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGR  525 (528)
T ss_pred             HhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence            3445566778999999999999999999999999999999999  33333434577888888888888777666699998


Q ss_pred             CH
Q psy5073         100 SF  101 (115)
Q Consensus       100 ~~  101 (115)
                      ++
T Consensus       526 ~l  527 (528)
T KOG0253|consen  526 SL  527 (528)
T ss_pred             CC
Confidence            74

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.75  E-value=2.1e-07  Score=65.72  Aligned_cols=75  Identities=11%  Similarity=0.113  Sum_probs=63.2

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ..+....+++|.+|+|.|+++.++......++..++|.+.+.+.+..+|++.|++.+.+.++..++.....||++
T Consensus       125 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        125 FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            446666788999999999999999999999999999999999999999999999888776666555555678754

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.74  E-value=2.4e-08  Score=71.48  Aligned_cols=79  Identities=13%  Similarity=0.017  Sum_probs=66.5

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      .....+....++.|.+|++.|+++.++......++..++|.+.+++.+..+|++.|++.+...++..++..+..||+++
T Consensus       104 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       104 GGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             hhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            3344566677899999999999999999999999999999999999999999999998888777777776677777543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.73  E-value=8.1e-08  Score=68.86  Aligned_cols=79  Identities=8%  Similarity=0.066  Sum_probs=64.8

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      .......+....+++|.+|++.|++++|+......++..+++.+.+.+.+. .+|++.|.+.++..++..++.+...+|.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       143 LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            333444566667899999999999999999999999999999999999888 4999999999888777766666666553

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.72  E-value=2e-07  Score=64.75  Aligned_cols=75  Identities=19%  Similarity=0.118  Sum_probs=64.2

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ..+....+++|.+|++.|++.+++......++..++|.+.+.+.+..+|++.|.+.+.+.++..++..+..||++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102         96 ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            345566789999999999999999999999999999999999999899999998888887777777667778753

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.71  E-value=9.6e-08  Score=66.94  Aligned_cols=75  Identities=9%  Similarity=-0.000  Sum_probs=63.4

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      .+....+++|.+|++.|+++.++......++..++|.+...+.+..+|++.+.+.+...++..++..+..||+++
T Consensus       109 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        109 YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            345566889999999999999999988888888999998888888899999999888888777777777888644

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.70  E-value=2.8e-07  Score=63.21  Aligned_cols=70  Identities=14%  Similarity=0.058  Sum_probs=57.7

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFV   89 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (115)
                      .....+....+++|.+|++.|++..|+......++..+++.+...+.+..+|++.|++.++..++..++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~  175 (365)
T TIGR00900       106 QAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI  175 (365)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3334566667899999999999999999999999999999999999999999998887776555554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.69  E-value=3.7e-07  Score=65.11  Aligned_cols=73  Identities=11%  Similarity=-0.008  Sum_probs=61.8

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      .+....+++|.+|++.|++++|+......++..+++.+.+.+.+..+|++.|.+.+++.++..++..+.+||+
T Consensus       129 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        129 WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4556678899999999999999999999999999999999999999999999988877766656555566664

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.68  E-value=6.3e-07  Score=65.09  Aligned_cols=76  Identities=13%  Similarity=0.053  Sum_probs=56.3

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhchhHHHH
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-----------------------TVGSAATYG   76 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~   76 (115)
                      ..+..+....+++|.+|++.|++++++......++..+++.+...+..                       ..+||+.+.
T Consensus       129 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~  208 (502)
T TIGR00887       129 IGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIG  208 (502)
T ss_pred             HhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHH
Confidence            333456677899999999999999999988888888787777665532                       137998887


Q ss_pred             HHHHHHHHHHHHHHhhcccC
Q psy5073          77 LLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        77 ~~~~~~~~~~~~~~~~~pet   96 (115)
                      +.++..++. ++..+++||+
T Consensus       209 ~~~ip~~i~-~~~~~~lpES  227 (502)
T TIGR00887       209 FGAVPALLA-LYFRLTIPET  227 (502)
T ss_pred             HHHHHHHHH-HHHHHhCCCC
Confidence            666555444 4445788997

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.67  E-value=3.5e-08  Score=67.50  Aligned_cols=81  Identities=16%  Similarity=0.075  Sum_probs=65.4

Q ss_pred             HHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          16 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        16 ~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      .+.......+....+++|.+|++.|++..++......++..+++.+.+.+.+..+|++.|++.+++.++..++...+.++
T Consensus        95 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~  174 (352)
T PF07690_consen   95 LGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE  174 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred             cccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence            33333445667777899999999999999999999999999999999999888899999999998888887765555554


Q ss_pred             C
Q psy5073          96 T   96 (115)
Q Consensus        96 t   96 (115)
                      +
T Consensus       175 ~  175 (352)
T PF07690_consen  175 P  175 (352)
T ss_dssp             -
T ss_pred             c
Confidence            4

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.67  E-value=1.6e-07  Score=68.10  Aligned_cols=75  Identities=9%  Similarity=-0.069  Sum_probs=62.2

Q ss_pred             ccchhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          23 IGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        23 ~~~~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ..+.....+.+.+ |++.|++++|+......++..++|.+++.+.+..+|+|.|++...+.++..++..+..||.+
T Consensus       111 ~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        111 IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3344444455665 78999999999999999999999999999999999999999988888887777777788753

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.66  E-value=3.6e-07  Score=64.04  Aligned_cols=74  Identities=14%  Similarity=0.049  Sum_probs=61.8

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      +.....+.|.+|++.|++.+++......++..+++.+...+.+..+|++.|.+.+++..+..+...+..||.++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~  183 (382)
T PRK10091        110 GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD  183 (382)
T ss_pred             HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            44456788999999999999999888889899999999998888999999999888777776666677888643

>TIGR00895 2A0115 benzoate transport

Probab=98.65  E-value=9.2e-08  Score=66.33  Aligned_cols=75  Identities=16%  Similarity=0.074  Sum_probs=63.5

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ..+....+++|.+|++.|+++.++......++..+++.+.+.+.+..+|++.+.+.+....+..++.....||++
T Consensus       122 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             chhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            345666789999999999999999999999999999999999999999998888887666666666667788764

>TIGR00901 2A0125 AmpG-related permease

Probab=98.65  E-value=4.8e-07  Score=62.60  Aligned_cols=77  Identities=10%  Similarity=-0.028  Sum_probs=62.4

Q ss_pred             hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------hhHHHHHHHHHHHHHHHHHHhh
Q psy5073          21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG--------SAATYGLLGVICTLGAVFVYTR   92 (115)
Q Consensus        21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~   92 (115)
                      ....+...++++|.+|+|.|+.+.++......++..+++.+...+.+..+        |+..|++.++..++..+...+.
T Consensus        98 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~  177 (356)
T TIGR00901        98 ATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFL  177 (356)
T ss_pred             HHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence            33445666789999999999999999999999999999999998888888        9999988888777665555545


Q ss_pred             cccCC
Q psy5073          93 VPETK   97 (115)
Q Consensus        93 ~pet~   97 (115)
                      .||++
T Consensus       178 ~~e~~  182 (356)
T TIGR00901       178 AKEPQ  182 (356)
T ss_pred             ccCCC
Confidence            67753

>TIGR00889 2A0110 nucleoside transporter

Probab=98.64  E-value=4.4e-07  Score=64.64  Aligned_cols=75  Identities=8%  Similarity=0.010  Sum_probs=62.6

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh------chhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLM-CYSWSCLFLVSKVFMDLIDTV------GSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      .+....+++|.+|++.|++++|+.. ....++..++|.+.+++.+..      ||+..|...++..++..++..++.||+
T Consensus       326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            3454567899999999999999997 566789999999999999874      588888888888888888888888987


Q ss_pred             CC
Q psy5073          97 KN   98 (115)
Q Consensus        97 ~~   98 (115)
                      ++
T Consensus       406 ~~  407 (418)
T TIGR00889       406 HN  407 (418)
T ss_pred             cc
Confidence            54

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.64  E-value=5.8e-08  Score=68.84  Aligned_cols=89  Identities=11%  Similarity=-0.087  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhchhHHHHHHHHHHHHHHH
Q psy5073          10 FSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF--MDLIDTVGSAATYGLLGVICTLGAV   87 (115)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   87 (115)
                      .......+.+....+|.+.-.++-.||+++|++..|+-....++++++.+.+.  .++..+.+|++.|++-++++++..+
T Consensus       121 ~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival  200 (448)
T COG2271         121 AVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVAL  200 (448)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence            33344445555555677777899999999999999999999999999999999  8888888999999999999999999


Q ss_pred             HHHhhcccCCC
Q psy5073          88 FVYTRVPETKN   98 (115)
Q Consensus        88 ~~~~~~pet~~   98 (115)
                      +.++..+||.+
T Consensus       201 ~~~~~~rd~Pq  211 (448)
T COG2271         201 ILLFLLRDRPQ  211 (448)
T ss_pred             HHHHHhCCCcc
Confidence            98888877643

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.61  E-value=3.1e-07  Score=65.50  Aligned_cols=72  Identities=8%  Similarity=0.080  Sum_probs=61.3

Q ss_pred             hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5073          28 WFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNK   99 (115)
Q Consensus        28 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   99 (115)
                      ....+|.+|++.|++++|+......++..++|.+.+++.+..||+..|...++..++..+...++.++.+++
T Consensus       359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            446789999999999999999999999999999999999999999889888888777766666566665554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.61  E-value=3e-07  Score=64.65  Aligned_cols=75  Identities=16%  Similarity=0.009  Sum_probs=61.4

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ..+....++.|.+|++.|++++++......++..+++.+...+.+..+|++.|++.++..++..++..+++||++
T Consensus       120 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        120 ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            345556688999999999999999999888999999988888888889999888887766666666666778863

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.59  E-value=4.5e-07  Score=64.71  Aligned_cols=72  Identities=11%  Similarity=-0.036  Sum_probs=58.2

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-TVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      +.....+.|.+|++.|++++|+......+++.+++.+.....+ ..+|++.|++.++..++..+...++.||+
T Consensus       137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            4455678899999999999999988888888888887766554 46899999998888887777666777775

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.58  E-value=8.2e-07  Score=62.59  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      .+.....+.|.+|++.|.++.++......++..++|.+...+.+..+|++.+++.++..++..+...+..||+++
T Consensus       119 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        119 GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            355667789999999999999999888888889999999999888899999998888877776666667888754

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.53  E-value=2.7e-06  Score=61.05  Aligned_cols=75  Identities=19%  Similarity=0.018  Sum_probs=55.9

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHHHHHHHHHHHhhc
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--------DTVGSAATYGLLGVICTLGAVFVYTRV   93 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (115)
                      +..+....+++|.+|++.|++++++......++..+.+.+...+.        +..+|++.|++.++..++..+ ..+++
T Consensus       136 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l  214 (479)
T PRK10077        136 LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFV  214 (479)
T ss_pred             HHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcC
Confidence            344566778999999999999999988877777777766554432        346899999888777666544 45678


Q ss_pred             ccCC
Q psy5073          94 PETK   97 (115)
Q Consensus        94 pet~   97 (115)
                      ||+.
T Consensus       215 ~~s~  218 (479)
T PRK10077        215 PETP  218 (479)
T ss_pred             CCCc
Confidence            9874

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.52  E-value=2.4e-06  Score=60.51  Aligned_cols=74  Identities=18%  Similarity=0.051  Sum_probs=61.0

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ..|....++.|.+|++.|+++.|+......++..++|.+.+.+. ..+|++.|++.+...++..++..+..||.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~  189 (400)
T PRK11646        116 FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYK  189 (400)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            34555567899999999999999999999999999999999998 779999998888777766655556677643

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.51  E-value=3.3e-06  Score=59.24  Aligned_cols=74  Identities=16%  Similarity=0.089  Sum_probs=62.3

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ..+....++.|.+|++.|+++.++......++..+++.+.+.+.+..+|++.+++.++..++..+...++.||.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        123 FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34555567889999999999999999888899999999999999989999999998888777777666777765

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.49  E-value=3.2e-06  Score=58.92  Aligned_cols=74  Identities=15%  Similarity=0.090  Sum_probs=57.1

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG--SAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ..+....++.|.+|++.|+++.++......++..+++.+.+.+.+..+  |++.|.+.++..++ .++.....||++
T Consensus       117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~  192 (405)
T TIGR00891       117 EYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF-ALWLRKNIPEAE  192 (405)
T ss_pred             hhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence            345556788999999999999999999999999999999998888766  98888765544333 344455678764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.48  E-value=2.5e-06  Score=61.20  Aligned_cols=70  Identities=11%  Similarity=0.075  Sum_probs=55.1

Q ss_pred             hhhhcccCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-cccCC
Q psy5073          28 WFMMAEIIPLEAKLWSSSLLMCYSWSCLFL-VSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTR-VPETK   97 (115)
Q Consensus        28 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pet~   97 (115)
                      ..+..|.+|++.|+++.|+......+++.+ +|.+.+.+.+..|++..|.+.+..+++..+....+ .+|+|
T Consensus       369 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  440 (452)
T PRK11273        369 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  440 (452)
T ss_pred             HHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            345679999999999999998888887665 68999999999999989988888777766655433 34433

>KOG2532|consensus

Probab=98.47  E-value=3.7e-06  Score=61.00  Aligned_cols=91  Identities=12%  Similarity=0.040  Sum_probs=72.5

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhcccC--
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPET--   96 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet--   96 (115)
                      .....|....+.+...|+++|++..++......++..+.-.+.+.+.+. .||+++|++++.+.++..++.+++..|.  
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~  221 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS  221 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            3344566777899999999999999999999999999999999999998 9999999999999998888877776553  


Q ss_pred             --CCCCHHHHHHHHhc
Q psy5073          97 --KNKSFEAIQAELAM  110 (115)
Q Consensus        97 --~~~~~~~~~~~~~~  110 (115)
                        +..+.+|.+...++
T Consensus       222 ~h~~is~~El~~I~~~  237 (466)
T KOG2532|consen  222 KHPNISEKELKYIEKG  237 (466)
T ss_pred             cCCCCCHHHHHHHHhc
Confidence              22344555444433

>PRK10054 putative transporter; Provisional

Probab=98.46  E-value=2.6e-06  Score=60.18  Aligned_cols=73  Identities=12%  Similarity=-0.013  Sum_probs=59.5

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      .+......+|.+|++.|+++.|+.+....++..++|.+.+.+.+ .+|+..|...++..++..+...+..||++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44556678999999999999999999999999999999998875 68998998887777766566656666653

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.46  E-value=2.3e-07  Score=63.88  Aligned_cols=76  Identities=9%  Similarity=-0.026  Sum_probs=60.9

Q ss_pred             hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVS-KVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ....+....+++|.+|++.|+++.++......++..+++ .+...+....+|++.|.+.+.+.++..++..+..||+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T TIGR00881        98 GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS  174 (379)
T ss_pred             cccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence            334566777899999999999999999988889888888 4666666778999998888877777766666677764

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.46  E-value=1.5e-06  Score=61.49  Aligned_cols=73  Identities=15%  Similarity=0.068  Sum_probs=54.4

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ..+....++.|.+|+|.|+++.++......++..+++.+.+.+.+..+|++.|++..... +..++.....||+
T Consensus       123 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~-~~~~~~~~~~p~~  195 (426)
T PRK12307        123 EYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPV-LLVIYIRARAPES  195 (426)
T ss_pred             HHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHH-HHHHHHHHHCCCC
Confidence            345556678999999999999999998888999999989888888889999887654332 2222222344654

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.45  E-value=3.8e-06  Score=61.14  Aligned_cols=79  Identities=11%  Similarity=0.092  Sum_probs=63.3

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-TVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ++.....+...++.+|.+|+++|+++.++......++..+++.+..++.+ ..||+..|++.+...++..+.. +..||+
T Consensus       119 ~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~-~~~~e~  197 (491)
T PRK11010        119 FCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT-LLAPEP  197 (491)
T ss_pred             HHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            33344556667789999999999999999999999999999999999988 4799999999887766664443 457876


Q ss_pred             C
Q psy5073          97 K   97 (115)
Q Consensus        97 ~   97 (115)
                      +
T Consensus       198 ~  198 (491)
T PRK11010        198 T  198 (491)
T ss_pred             c
Confidence            3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.44  E-value=2.9e-06  Score=60.03  Aligned_cols=73  Identities=18%  Similarity=0.109  Sum_probs=56.0

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF---MDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ..+....+++|.+|++.|++++++......++..+++.+.   .......+|++.|++.++..++ .++..+++||+
T Consensus       144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~l~~~  219 (481)
T TIGR00879       144 ASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPES  219 (481)
T ss_pred             HHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-HHHHHhcCCCC
Confidence            3455667899999999999999999988889898888888   4444567999988885554444 34455677886

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10504 putative transporter; Provisional

Probab=98.44  E-value=4e-06  Score=60.19  Aligned_cols=74  Identities=12%  Similarity=0.092  Sum_probs=62.1

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ..+....++.|.+|++.|+++.|+......++..++|.+.+.+.+..+|++.|.+......+..+......|+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        115 MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            34566677899999999999999999999999999999999999999999999888777766666666566654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.43  E-value=3.7e-06  Score=60.33  Aligned_cols=74  Identities=14%  Similarity=-0.048  Sum_probs=53.5

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV-SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      .+.....+.|.+|++.|++++|+......+++.+. +.+...+....+|++.|++.+++.++..++..+++||+.
T Consensus       138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            34444568899999999999999887777776444 433333334458999999888877777677777778753

>KOG0255|consensus

Probab=98.43  E-value=5.4e-06  Score=60.46  Aligned_cols=92  Identities=16%  Similarity=0.112  Sum_probs=66.5

Q ss_pred             HHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          16 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        16 ~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      .+..+.+.... +.+.+|++|+..|..+.+.....+.++..++|.+....... .....+.+++....+...+...++||
T Consensus       417 ~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~lpe  494 (521)
T KOG0255|consen  417 KFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM-FPLLGLILFGWLALLLGLLSLLLLPE  494 (521)
T ss_pred             HHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHHHhcCcc
Confidence            34444444444 67899999999999999999999999999998887666553 22223333566677777777789999


Q ss_pred             CCCCCHHHHHHHHh
Q psy5073          96 TKNKSFEAIQAELA  109 (115)
Q Consensus        96 t~~~~~~~~~~~~~  109 (115)
                      |+++.+.+..++.+
T Consensus       495 t~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  495 TKGKPLPGTLLDAE  508 (521)
T ss_pred             cCCCCCchhHHHHH
Confidence            99998765443333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.43  E-value=4e-06  Score=60.73  Aligned_cols=67  Identities=6%  Similarity=-0.014  Sum_probs=51.1

Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          29 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID---------TVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      .+++|.+|++.|++++|+......++..+++.+.+.+..         ..+|++.|++.+++.++..++..++.++
T Consensus       146 ~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        146 YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            468999999999999999987777777777666665533         1489999999988887776666554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.41  E-value=9.4e-06  Score=56.98  Aligned_cols=75  Identities=17%  Similarity=0.057  Sum_probs=60.9

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      .+....+..|.+|.+.|+++.++......++..++|.+.+.+.+..+|++.|.+.++..++..+...+..||++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        114 GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            344555778999999999999998888888888999999998888899999988887776666666667788643

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.37  E-value=1.1e-05  Score=61.61  Aligned_cols=75  Identities=17%  Similarity=0.048  Sum_probs=56.2

Q ss_pred             hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------chhHHHHHHHHHHHHHHH
Q psy5073          21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------------GSAATYGLLGVICTLGAV   87 (115)
Q Consensus        21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~   87 (115)
                      .+..+....+++|.+|++.|++.+++......++..+++.+...+....             +|++.+++.++. .+..+
T Consensus       270 g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp-~ll~l  348 (742)
T TIGR01299       270 GGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFP-CVFAI  348 (742)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHH-HHHHH
Confidence            3345777889999999999999999998888888888887776665433             577666665554 44445


Q ss_pred             HHHhhcccC
Q psy5073          88 FVYTRVPET   96 (115)
Q Consensus        88 ~~~~~~pet   96 (115)
                      +..+++||+
T Consensus       349 l~~~~lPES  357 (742)
T TIGR01299       349 GALTFMPES  357 (742)
T ss_pred             HHHHHcCCC
Confidence            566788997

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.36  E-value=8.4e-06  Score=57.25  Aligned_cols=76  Identities=8%  Similarity=-0.010  Sum_probs=59.8

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSF  101 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  101 (115)
                      +.......|.+|++.|+++.|+......++..+++.+.+.+.+..|+++.+...+...++..+.. +..++.++++.
T Consensus       321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  396 (399)
T PRK05122        321 PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALT-WLLYRRAPRAV  396 (399)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHhcccccccC
Confidence            44445667999999999999999999999989999999999999999988888877777665554 45555555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.35  E-value=8.6e-06  Score=57.51  Aligned_cols=79  Identities=14%  Similarity=0.122  Sum_probs=62.9

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      .+.....+...++++|.+|+|+|+++.++......++..+++.+...+.+. .||+..|++.++..++..+ ..+..||+
T Consensus       106 ~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e~  184 (402)
T PRK11902        106 FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL-TTLWAPEP  184 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCCC
Confidence            444456677778899999999999999999998889999999988888885 5999999988877665544 34566776


Q ss_pred             C
Q psy5073          97 K   97 (115)
Q Consensus        97 ~   97 (115)
                      +
T Consensus       185 ~  185 (402)
T PRK11902        185 E  185 (402)
T ss_pred             c
Confidence            3

>PRK09952 shikimate transporter; Provisional

Probab=98.35  E-value=8.9e-06  Score=58.24  Aligned_cols=72  Identities=8%  Similarity=-0.077  Sum_probs=52.6

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSW-SCLFLVSKVFMDLIDTV--GSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      .+..+.+++|.+|++.|+++.|+.+..+. ++++++|.+.+++.+..  +|...+.+.++..++..+. .+..+|+
T Consensus       361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~-~~~~~~~  435 (438)
T PRK09952        361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT-ALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHcccc
Confidence            44566789999999999999999887765 78899999999998854  3655555555555444444 4456764

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.34  E-value=3.5e-06  Score=59.28  Aligned_cols=71  Identities=13%  Similarity=0.079  Sum_probs=56.0

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ..+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..  +.+..|..+++..++..+.. ...|++
T Consensus       297 ~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~-~~~~~~  367 (368)
T TIGR00903       297 AYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA-LLLPND  367 (368)
T ss_pred             hHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence            334566789999999999999999999999999999999888774  65667888877777766654 344554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.33  E-value=6.8e-06  Score=56.93  Aligned_cols=76  Identities=13%  Similarity=0.051  Sum_probs=59.1

Q ss_pred             cccchhhhhhcccCChhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWS--SSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ...|....+..|..|++.|..+  .++......++..+++.+.+.+.+..+|++.|++.+...++..++..+..||.+
T Consensus       103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       103 TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            3445555677888888877755  567777778889999999999998899999999998877777777666788754

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.33  E-value=4.7e-06  Score=60.07  Aligned_cols=74  Identities=15%  Similarity=0.068  Sum_probs=57.1

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      +..+....++.|.+|.+.|+++.++......++..+++.+...+.+..+|++.|++..+. ++..++.....||+
T Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~-~~~~~~~~~~~p~~  197 (496)
T PRK03893        124 GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP-IIFALWLRKNLPEA  197 (496)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH-HHHHHHHHHhCCCc
Confidence            344555667899999999999999999999999999999999999999999888764333 33333334456664

>TIGR00898 2A0119 cation transport protein

Probab=98.32  E-value=1.4e-05  Score=57.80  Aligned_cols=75  Identities=16%  Similarity=0.019  Sum_probs=56.3

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      +...+..+....+++|.+|++.|+...++......++..+.+.+...+.   +|++.+++.++..++..+.. +++||+
T Consensus       192 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            3333445677778999999999999999997777777777777665543   38989888888776665554 678885

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.31  E-value=5.6e-06  Score=59.06  Aligned_cols=73  Identities=15%  Similarity=0.191  Sum_probs=45.2

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhHH-HHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTVGSAAT-YGLLGVICTLGAVFVYTRVPETKNKS  100 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pet~~~~  100 (115)
                      +..+.+.+|.||+|.|++++|+.+..++. .+...|.+...+ +..|+... +...++..++. .+..+. .|+++++
T Consensus       355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~-~~~~~~-l~~~~~~  429 (432)
T PRK10406        355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVA-FLVSLM-LHRKGKG  429 (432)
T ss_pred             HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHH-HHHHHH-hhhcccc
Confidence            34556789999999999999999988764 355566766644 55553333 33333333333 333333 4445554

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.31  E-value=6.6e-06  Score=56.70  Aligned_cols=68  Identities=18%  Similarity=0.237  Sum_probs=58.3

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHH
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFV   89 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   89 (115)
                      +..+..+.+.+|.+|++.|+++.|+......++..++|.+.+.+.+..+ +++.+.+.++..++..+..
T Consensus       327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       327 GAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            3567788899999999999999999999999999999999999999888 8888887777666655544

>PRK11043 putative transporter; Provisional

Probab=98.30  E-value=1.7e-05  Score=55.76  Aligned_cols=70  Identities=16%  Similarity=0.024  Sum_probs=56.3

Q ss_pred             hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      .....++|.+|++.|.+..+.......++..++|.+.+.+.+..+|++.|.+.+...++..+... ..+|.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~  183 (401)
T PRK11043        114 IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL-RLKPS  183 (401)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH-HcCCC
Confidence            34457889999999999999888888888999999999999999999999888877776655544 34443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.30  E-value=8.7e-06  Score=59.07  Aligned_cols=76  Identities=16%  Similarity=0.037  Sum_probs=53.0

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHHHHHHHHHHHh
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--------DTVGSAATYGLLGVICTLGAVFVYT   91 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~   91 (115)
                      ..+..+....+++|.+|++.|++..++......++..+++.+...+.        ...||++.|++.+++.++ .++...
T Consensus       132 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~  210 (490)
T PRK10642        132 VGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRH  210 (490)
T ss_pred             hHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHH
Confidence            33444566678999999999999999987766666666665544433        257999999886655443 344455


Q ss_pred             hcccC
Q psy5073          92 RVPET   96 (115)
Q Consensus        92 ~~pet   96 (115)
                      ..||+
T Consensus       211 ~~~es  215 (490)
T PRK10642        211 ALEET  215 (490)
T ss_pred             cCCCC
Confidence            77886

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.27  E-value=4.1e-06  Score=59.83  Aligned_cols=69  Identities=12%  Similarity=0.063  Sum_probs=59.3

Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          29 FMMAEIIPLEAKLWSSSLLMCYSWSCL-FLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ....|.+|++.|+++.|+......+++ .++|.+.+.+.+..|+.+.+.+.....++..+...+.+||.|
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            356899999999999999988877765 578999999999999988988888888888888888888865

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.26  E-value=9.2e-06  Score=57.98  Aligned_cols=80  Identities=14%  Similarity=0.099  Sum_probs=53.2

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFE  102 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~  102 (115)
                      .+..+.+.+|.+|++.|+++.++.+..+.. ++.++|.+.+++.+..|+++....+.+...+......+..++.++..++
T Consensus       349 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (434)
T PRK15075        349 NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARLQ  428 (434)
T ss_pred             HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccccchhhh
Confidence            344556789999999999999998776664 5888999999999988754332222222233333344566666665554


Q ss_pred             H
Q psy5073         103 A  103 (115)
Q Consensus       103 ~  103 (115)
                      .
T Consensus       429 ~  429 (434)
T PRK15075        429 A  429 (434)
T ss_pred             h
Confidence            3

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.26  E-value=1.2e-05  Score=57.32  Aligned_cols=74  Identities=16%  Similarity=0.091  Sum_probs=51.8

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--------DTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      ..+....+++|.+|++.|++..++.......+..+++.+...+.        ...|||+.|++.++..++. ++.....|
T Consensus       141 ~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~  219 (432)
T PRK10406        141 EYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLD  219 (432)
T ss_pred             hHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCC
Confidence            34666779999999999999999877666666666665544433        2579999998776665554 33345567


Q ss_pred             cCC
Q psy5073          95 ETK   97 (115)
Q Consensus        95 et~   97 (115)
                      |++
T Consensus       220 e~~  222 (432)
T PRK10406        220 ETS  222 (432)
T ss_pred             CCc
Confidence            764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.26  E-value=1.2e-05  Score=63.46  Aligned_cols=81  Identities=12%  Similarity=0.084  Sum_probs=63.4

Q ss_pred             HHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          15 IVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      ..+.......|...+++.|++|.+.|++++|+..+...++..++|.+++++....+|++.| +...+..+..++..+.+|
T Consensus       117 l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  195 (1140)
T PRK06814        117 LMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIP  195 (1140)
T ss_pred             HHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCC
Confidence            3344445567888889999999999999999999999999999999999999999998777 444444444455556666


Q ss_pred             cC
Q psy5073          95 ET   96 (115)
Q Consensus        95 et   96 (115)
                      ++
T Consensus       196 ~~  197 (1140)
T PRK06814        196 KT  197 (1140)
T ss_pred             CC
Confidence            65

>PRK12382 putative transporter; Provisional

Probab=98.26  E-value=2.2e-05  Score=55.04  Aligned_cols=70  Identities=9%  Similarity=0.004  Sum_probs=58.8

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhc
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRV   93 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (115)
                      .+.......|.+|++.|+++.|+......++..++|.+.+.+.+..||++.|...+.+.++..+...+..
T Consensus       320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            3445556789999999999999999999999999999999999999999999888887777766655443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.25  E-value=1.7e-05  Score=54.85  Aligned_cols=72  Identities=11%  Similarity=-0.011  Sum_probs=51.2

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hchhHHH-HHHHHHHHHHHHHHHhhc
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT----------VGSAATY-GLLGVICTLGAVFVYTRV   93 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~   93 (115)
                      +....+++|.+|++.|+++.++......++..+++.+.+.+...          .+|++.+ ...+.+..+..++.....
T Consensus       109 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  188 (366)
T TIGR00886       109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVG  188 (366)
T ss_pred             HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhc
Confidence            34456789999999999999999877777777787777776653          3788888 444555555545545555


Q ss_pred             ccC
Q psy5073          94 PET   96 (115)
Q Consensus        94 pet   96 (115)
                      +|+
T Consensus       189 ~~~  191 (366)
T TIGR00886       189 ADT  191 (366)
T ss_pred             ccC
Confidence            553

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.25  E-value=1e-05  Score=59.13  Aligned_cols=62  Identities=13%  Similarity=-0.002  Sum_probs=52.6

Q ss_pred             cchhhhhhcccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy5073          24 GPIPWFMMAEIIPLE--AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLG   85 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (115)
                      .+....+++|+||++  .|+++.++.++..+++++++|.+.+++.+..||++.|...++.+++.
T Consensus       118 ~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~  181 (493)
T PRK15462        118 KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAG  181 (493)
T ss_pred             cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Confidence            354557899999986  79999999999999999999999999999999999998876544443

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.24  E-value=1.3e-05  Score=56.72  Aligned_cols=75  Identities=16%  Similarity=0.129  Sum_probs=52.6

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHH-HHHHHHHHHHHHHHHHhhcccC
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT-YGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      +..+..+.++.|.+|++.|++++|+......+++.++|.+.+++.+..+.... ++..............+..||+
T Consensus       337 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (426)
T PRK12307        337 GVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR  412 (426)
T ss_pred             cHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence            33445556789999999999999999999999999999999999988875433 3333222333333333444554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.24  E-value=1e-05  Score=58.34  Aligned_cols=62  Identities=11%  Similarity=0.068  Sum_probs=50.6

Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH------------hhchhHHHHHHHHHHHHHHHHHH
Q psy5073          29 FMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLID------------TVGSAATYGLLGVICTLGAVFVY   90 (115)
Q Consensus        29 ~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~   90 (115)
                      ....|.+|++.|+++.|+....+.+ ++++.|.+.+.+.+            ..+|+..|.+..+..++..+...
T Consensus       372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            4567999999999999999988886 66899999999999            56788888887666666544433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.23  E-value=4.3e-05  Score=55.47  Aligned_cols=89  Identities=7%  Similarity=-0.115  Sum_probs=61.0

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhchhHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID------------------TVGSAATYGLLGVICTL   84 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~   84 (115)
                      ..+.....+++.||++.|+++.|+....++++..+.+.+.|.+..                  ..+|+...+++.++.++
T Consensus       144 ~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv  223 (462)
T PRK15034        144 NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAI  223 (462)
T ss_pred             hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHH
Confidence            445555679999999999999999987777777777777766542                  23366677778777777


Q ss_pred             HHHHHHhhcccCC--CCCHHHHHHHHhcc
Q psy5073          85 GAVFVYTRVPETK--NKSFEAIQAELAMG  111 (115)
Q Consensus        85 ~~~~~~~~~pet~--~~~~~~~~~~~~~~  111 (115)
                      ..++.++..++.+  ..+.+|..+.+|++
T Consensus       224 ~~i~~~~~~~~~~~~~~~~~~~~~vlk~~  252 (462)
T PRK15034        224 ATIAAWSGMNDIASSRASIADQLPVLQRL  252 (462)
T ss_pred             HHHHHHHhCCCccccccCHHHHHHHhCCC
Confidence            7666666666543  33455555555544

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.22  E-value=5.1e-06  Score=59.92  Aligned_cols=64  Identities=9%  Similarity=-0.069  Sum_probs=51.8

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICT   83 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (115)
                      +.+..+....+++|.+|++.|++++|+......++..++|.+.+.+.+..|++..+...+....
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~  443 (496)
T PRK03893        380 GQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLT  443 (496)
T ss_pred             hcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence            3344455666789999999999999999999999999999999999999998777655554333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.21  E-value=1.7e-05  Score=57.88  Aligned_cols=73  Identities=16%  Similarity=0.097  Sum_probs=55.5

Q ss_pred             hcccchhhhhhcccCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          21 IGIGPIPWFMMAEIIPLEA--KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        21 ~~~~~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      ....|....+++|+||++.  |+++.++.+...+++..++|.+.+++.+..||++.|++..+ ..+..++.+...+
T Consensus       120 g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~  194 (489)
T PRK10207        120 GLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACR  194 (489)
T ss_pred             ccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcc
Confidence            3344666778999999884  57889999999999999999999999999999999887544 3333333333333

>KOG0255|consensus

Probab=98.21  E-value=3.9e-05  Score=56.02  Aligned_cols=80  Identities=11%  Similarity=0.101  Sum_probs=64.9

Q ss_pred             HHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh
Q psy5073          13 CTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTR   92 (115)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (115)
                      =++.+++..+...+.+.+.+|+++++.|+.+..+ ....+.++...+....++..  +|++.+++..+...+..++ .+.
T Consensus       178 Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l  253 (521)
T KOG0255|consen  178 RFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFL  253 (521)
T ss_pred             HHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHc
Confidence            3444566667778888899999999999999999 88888889999999998887  8998988888877766555 455


Q ss_pred             cccC
Q psy5073          93 VPET   96 (115)
Q Consensus        93 ~pet   96 (115)
                      .||.
T Consensus       254 ~~Es  257 (521)
T KOG0255|consen  254 PPES  257 (521)
T ss_pred             cCcC
Confidence            5675

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.21  E-value=2.3e-05  Score=53.26  Aligned_cols=72  Identities=21%  Similarity=0.108  Sum_probs=61.9

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFV   89 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (115)
                      .......+....+..|.+|++.|++..|+......++..+++.+.+.+.+..+++..+.+.+++.++..++.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         277 FGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            444455677778999999999999999999999999999999999999998999988988888777766554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2533|consensus

Probab=98.18  E-value=6e-06  Score=60.29  Aligned_cols=87  Identities=10%  Similarity=0.087  Sum_probs=74.9

Q ss_pred             HHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhchhHHHHHHHHHHHHH
Q psy5073          12 VCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID------TVGSAATYGLLGVICTLG   85 (115)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~   85 (115)
                      +=++.+.+-.+..|....+++-.|..++|++-+|+.+..+.+++++++.+...+.+      ..||+|.|.+-+++.++.
T Consensus       140 lr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~  219 (495)
T KOG2533|consen  140 LRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVL  219 (495)
T ss_pred             HHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHH
Confidence            34445566777788888999999999999999999999999999999999888743      468999999999999999


Q ss_pred             HHHHHhhcccCCC
Q psy5073          86 AVFVYTRVPETKN   98 (115)
Q Consensus        86 ~~~~~~~~pet~~   98 (115)
                      .+++++++|+...
T Consensus       220 gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  220 GIVVFFFLPDNPS  232 (495)
T ss_pred             HheEEEEecCChh
Confidence            9999999998533

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.17  E-value=2.5e-05  Score=53.10  Aligned_cols=68  Identities=16%  Similarity=0.090  Sum_probs=57.1

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFV   89 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (115)
                      ...+....+.+|.+|+|.|++..++......++..+++.+.+.+.+..+|++.+.+.+...++..+..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174         103 ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL  170 (352)
T ss_pred             cccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            34466667899999999999999999999999999999999999999899988887777666554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.16  E-value=5.3e-05  Score=53.67  Aligned_cols=72  Identities=15%  Similarity=0.074  Sum_probs=57.0

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      +.....++|.+|++.|+++.++......++..+++.+.+.+.+..+|++.+.+.+...++..+ ..+.+||++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  200 (417)
T PRK10489        129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLL-PLLRLPALP  200 (417)
T ss_pred             HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhCCCCC
Confidence            334457889999999999999999888999999999999999988998888776665555443 345667653

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.16  E-value=1.7e-05  Score=54.52  Aligned_cols=62  Identities=8%  Similarity=-0.002  Sum_probs=53.0

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLG   85 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (115)
                      .+....+.+|.+|++.|++..|+......++..++|.+.+.+.+..||++.|.+.++..++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            34445678999999999999999999999999999999999999999988888777655543

>PRK15075 citrate-proton symporter; Provisional

Probab=98.15  E-value=1.3e-05  Score=57.16  Aligned_cols=56  Identities=13%  Similarity=-0.039  Sum_probs=42.5

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhchhHHHHHHHH
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL--------IDTVGSAATYGLLGV   80 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~   80 (115)
                      +....+++|.+|++.|++++++.....+++..+++.++..+        .+..||++.|++...
T Consensus       136 ~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        136 GGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            44456899999999999999998877777666666666554        346799988876443

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.15  E-value=4.3e-05  Score=53.85  Aligned_cols=77  Identities=14%  Similarity=0.079  Sum_probs=58.6

Q ss_pred             cccchhhhhhcccCChhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          22 GIGPIPWFMMAEIIPLEAKL--WSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      ...|....+..|..|++.|.  ...++......++..++|.+...+.+..||+..|...+...++..+...+..||.++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  199 (393)
T PRK15011        121 TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK  199 (393)
T ss_pred             hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            34455555667777766664  334677778889999999999999999999999998888777777777777888643

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.14  E-value=2.1e-05  Score=55.27  Aligned_cols=69  Identities=7%  Similarity=-0.024  Sum_probs=50.9

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHH
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVY   90 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   90 (115)
                      +..+....+.+|.+|++.|+++.|+......++..++|.+.+.+.+..+ +...+.......++..+...
T Consensus       324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            3455666788999999999999999999999999999999999988754 33344444444444433333

>PRK09952 shikimate transporter; Provisional

Probab=98.14  E-value=2.9e-05  Score=55.65  Aligned_cols=73  Identities=15%  Similarity=0.052  Sum_probs=51.5

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID--------TVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      .+....+++|.+|++.|++..+.......++..++..+...+..        ..+||+.|.+.++..++. ++.....||
T Consensus       143 ~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~e  221 (438)
T PRK09952        143 WGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEE  221 (438)
T ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCC
Confidence            34555689999999999999988887777777777666655542        468999888776654443 333345677


Q ss_pred             CC
Q psy5073          96 TK   97 (115)
Q Consensus        96 t~   97 (115)
                      ++
T Consensus       222 s~  223 (438)
T PRK09952        222 SA  223 (438)
T ss_pred             Ch
Confidence            54

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.09  E-value=1.2e-05  Score=55.29  Aligned_cols=68  Identities=16%  Similarity=0.177  Sum_probs=52.9

Q ss_pred             hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      ......|.+| |.|+++.++......++..+.+.+...+.+..+|++.|.+.++..++..+...++.+|
T Consensus       112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       112 ALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             HHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence            3345678887 5799999999888888777777777777777899999999888887777766666654

>PRK03699 putative transporter; Provisional

Probab=98.09  E-value=0.0001  Score=52.00  Aligned_cols=65  Identities=8%  Similarity=0.065  Sum_probs=51.6

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHH
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-TVGSAATYGLLGVICTLGAVFV   89 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   89 (115)
                      +....+++|.+|++.|+++.++......+++.+.|.+...+.. ..+|++.|.+.++..++..++.
T Consensus       114 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            4455678999999999999999888878888888888887765 4699999988887766654443

>KOG1330|consensus

Probab=98.08  E-value=2.4e-07  Score=66.40  Aligned_cols=77  Identities=13%  Similarity=-0.015  Sum_probs=67.8

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTRVPETKNK   99 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~   99 (115)
                      ..|....+++|.||.+.|+++.++.+.+..++.+++-..+..+.+..+ |||.|...++++++..++..++.+|++..
T Consensus       138 ~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg  215 (493)
T KOG1330|consen  138 YSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG  215 (493)
T ss_pred             hcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence            356667789999999999999999999999999999888888888766 99999999999999999999999887543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.07  E-value=3.3e-05  Score=55.69  Aligned_cols=68  Identities=15%  Similarity=0.062  Sum_probs=55.0

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhc
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRV   93 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (115)
                      +....++.|.+| +.|+++.|+......++..++|.+.+.+.+..||++.|.+.+++.++..+...+..
T Consensus       127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~  194 (455)
T TIGR00892       127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR  194 (455)
T ss_pred             hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            344456788886 78999999999999999999999999999999999999999887766554444333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.06  E-value=7.7e-05  Score=52.75  Aligned_cols=79  Identities=15%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             HHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          17 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        17 ~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      +.......|...++++|++|++.|+++.|+......++..++|.+++.+.+.. |+..+.+.+...++. .+..+.+||.
T Consensus        99 G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~  176 (393)
T PRK11195         99 GIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRL  176 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence            34444556777789999999999999999999998999999999999998754 555555444433333 3444677775


Q ss_pred             C
Q psy5073          97 K   97 (115)
Q Consensus        97 ~   97 (115)
                      +
T Consensus       177 ~  177 (393)
T PRK11195        177 G  177 (393)
T ss_pred             c
Confidence            3

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.06  E-value=2.7e-05  Score=55.24  Aligned_cols=70  Identities=14%  Similarity=0.086  Sum_probs=55.6

Q ss_pred             hhhhhcccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          27 PWFMMAEIIPLEAKLWSSSL-LMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        27 ~~~~~~E~fp~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ...+++|.+|++.|++..+. ......++..+++.+.+++.+..||+..|...+.+.++..++..+..++.
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            33567899999999988766 34556788999999999999999999999988888777776666666553

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.05  E-value=6e-05  Score=53.68  Aligned_cols=71  Identities=11%  Similarity=-0.004  Sum_probs=60.4

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG---SAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      ..+...++++.||+|.+++++|+.. .++++..+...+.|.++...+   |+.+-.++.+..++..+...+...|
T Consensus       122 Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         122 FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3444457899999999999999999 889999999999999999999   8888888888888777776666644

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.03  E-value=7.6e-05  Score=51.62  Aligned_cols=73  Identities=16%  Similarity=0.118  Sum_probs=52.1

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--------DTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      .+....+++|.+|++.|++..++......++..+++.+...+.        +..+|++.|.+.+...++. .+.....||
T Consensus       114 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~  192 (394)
T TIGR00883       114 WGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG-LYLRRNLEE  192 (394)
T ss_pred             ccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH-HHHHHhcCC
Confidence            3455568999999999999999998888888888887766554        2457888887766554443 333345566


Q ss_pred             CC
Q psy5073          96 TK   97 (115)
Q Consensus        96 t~   97 (115)
                      ++
T Consensus       193 ~~  194 (394)
T TIGR00883       193 TP  194 (394)
T ss_pred             Ch
Confidence            43

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.02  E-value=0.00012  Score=51.76  Aligned_cols=77  Identities=6%  Similarity=-0.083  Sum_probs=60.0

Q ss_pred             cchhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073          24 GPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTRVPETKNKS  100 (115)
Q Consensus        24 ~~~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  100 (115)
                      .+.......|.+ |++.|++..|+....+.++..++|.+.+++.+..| +...|.+..+.+++.........|||+++.
T Consensus       310 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        310 FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence            344444556777 57899999999999999999999999999999876 555566666666777667677889988764

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.02  E-value=1.1e-05  Score=58.18  Aligned_cols=75  Identities=7%  Similarity=-0.113  Sum_probs=57.3

Q ss_pred             hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV---GSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      ....|....+++|.+|++.|++++|+......++..+++.+..++....   +|+..|.+.+++.++..++.+++.++
T Consensus       137 ~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~  214 (467)
T PRK09556        137 STGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD  214 (467)
T ss_pred             hccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            3345666678999999999999999998888888888888877766653   58877887777776666655555544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.02  E-value=0.00012  Score=53.53  Aligned_cols=62  Identities=10%  Similarity=-0.066  Sum_probs=50.0

Q ss_pred             ccchhhhhhcccCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEA--KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTL   84 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (115)
                      ..+....+++|+||++.  |..+.++.+...+++..++|.+.+++.+..||++.|.+.++...+
T Consensus       129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            34566678999998653  456788888999999999999999999999999999887754444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.01  E-value=6.1e-05  Score=56.67  Aligned_cols=78  Identities=9%  Similarity=-0.053  Sum_probs=57.0

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------chhHHH
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV----------------------GSAATY   75 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~   75 (115)
                      +......+....++.|.+|++.|+...|+......++..+++.+++.+.+..                      .|+..|
T Consensus       184 iG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~F  263 (633)
T TIGR00805       184 IGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGF  263 (633)
T ss_pred             ccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHH
Confidence            3333444566679999999999999999999999999999999998887642                      144456


Q ss_pred             HHHHHHHHHHHHHHHhhcccC
Q psy5073          76 GLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~pet   96 (115)
                      .+.+++.++..+. .+..|++
T Consensus       264 li~g~l~~l~~v~-l~~~p~~  283 (633)
T TIGR00805       264 LICGGVALLTSIP-FFFFPKA  283 (633)
T ss_pred             HHHHHHHHHHHHH-HHhCccc
Confidence            6666666665544 3455654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.99  E-value=1.1e-05  Score=58.20  Aligned_cols=65  Identities=9%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-GSAATYGLLGVICTLGAV   87 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   87 (115)
                      ..+.....+.|.+|++.|++++|+......++..++|.+.+.+.+.. +|++.|.+.+++.++..+
T Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       350 VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            34555677889999999999999999999999999999999998876 487788777766555444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.99  E-value=0.00011  Score=57.96  Aligned_cols=80  Identities=16%  Similarity=0.257  Sum_probs=55.7

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------h-chhHHHHHHHHHHHHHHHH
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT--------V-GSAATYGLLGVICTLGAVF   88 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~   88 (115)
                      +......+....+++|++|.+.|++++|+......++..+++.+++++...        . +|.+.+.+..+...+..++
T Consensus       115 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1146)
T PRK08633        115 AQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLI  194 (1146)
T ss_pred             HHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHH
Confidence            333445566677899999999999999999999999999999999998876        2 2333333333333333344


Q ss_pred             HHhhcccCC
Q psy5073          89 VYTRVPETK   97 (115)
Q Consensus        89 ~~~~~pet~   97 (115)
                      ..+..||++
T Consensus       195 ~~~~~~~~~  203 (1146)
T PRK08633        195 FAYRLPKVP  203 (1146)
T ss_pred             HHhcCcCCC
Confidence            445567653

>PRK03545 putative arabinose transporter; Provisional

Probab=97.98  E-value=0.00016  Score=50.76  Aligned_cols=71  Identities=10%  Similarity=-0.066  Sum_probs=57.8

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      .++.....+.|..| +.|++++|+......++..++|.+.+.+.+..|++.+|...+.+.++..++..+..+
T Consensus       311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        311 IGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             chHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            34445556778776 689999999999899999999999999999999998998888877777776665554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.96  E-value=5.3e-05  Score=53.18  Aligned_cols=72  Identities=8%  Similarity=-0.063  Sum_probs=60.0

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      .+.....+.|..|++.|++..++......++..++|.+.+.+.+..++++.|.+.+++.++..++..+..++
T Consensus       329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        329 LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445667889999999999999999999999999999999999999999999988888877776655544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.93  E-value=0.00013  Score=53.08  Aligned_cols=63  Identities=13%  Similarity=0.075  Sum_probs=52.7

Q ss_pred             ccchhhhhhcccCChhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEA---KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLG   85 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~---R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (115)
                      ..|....+++|.+|++.   |+++.++.+...+++..++|.+.+++.+..+|++.|...++..++.
T Consensus       119 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       119 FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG  184 (475)
T ss_pred             ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            34566678899998865   8899999999999999999999999999899999988877544444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.93  E-value=0.00015  Score=51.12  Aligned_cols=68  Identities=10%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ...+..|.+|.+ |++++++......++..+++.+.+.+.+..+|+..+.+..+..++. .+..+..||+
T Consensus       326 ~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~  393 (393)
T PRK15011        326 GMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIAT-LFCLLRIKDV  393 (393)
T ss_pred             HHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHhhcCC
Confidence            345678999865 9999999988889999999999999999889988887766655554 4445566764

>PRK12382 putative transporter; Provisional

Probab=97.92  E-value=0.00014  Score=51.04  Aligned_cols=57  Identities=12%  Similarity=-0.171  Sum_probs=46.2

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVI   81 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (115)
                      +....++.|.+|++.|++++|+.......+..++|.+.+.+.+..+|++.+.+....
T Consensus       131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            334456789999999999999998888888889999999998888998766554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.91  E-value=0.00023  Score=50.31  Aligned_cols=62  Identities=8%  Similarity=-0.107  Sum_probs=48.7

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-GSAATYGLLGVICTLG   85 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   85 (115)
                      ..+....++.|.+| +.|++++|+.......+..+++.+.+.+.+.. +|++.+.++++..++.
T Consensus       114 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        114 IQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            34445567889998 78999999999888889999999999988875 8998877766554443

>TIGR00897 2A0118 polyol permease family

Probab=97.89  E-value=0.00011  Score=51.91  Aligned_cols=67  Identities=9%  Similarity=-0.101  Sum_probs=44.7

Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          29 FMMAEIIPLEAKLWSSSLLMCYSWSCL-FLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      ..+.|.+|++.|++++|+......++. ..++.+...+.+..||+..++.......+..++..+..+|
T Consensus       128 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  195 (402)
T TIGR00897       128 VWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKD  195 (402)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence            457799999999999999998888775 4678888887777786544443333333333333334443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.89  E-value=0.00026  Score=50.58  Aligned_cols=72  Identities=15%  Similarity=0.048  Sum_probs=53.9

Q ss_pred             hhhhhhcccCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhchhH------HHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          26 IPWFMMAEIIPLEAKLWSSSLLMCYS-WSCLFLVSKVFMDLIDTVGSAA------TYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        26 ~~~~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ....++.|..|++.|++++++..... .++..++..+++++.+..|.+.      .+.+.+++.++..++..++.+|++
T Consensus       321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            34468999999999999999987765 6899999999999999876543      345555555555555556666654

>TIGR01272 gluP glucose/galactose transporter

Probab=97.86  E-value=0.00017  Score=49.73  Aligned_cols=75  Identities=16%  Similarity=0.104  Sum_probs=54.9

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hchhHHHHHHHHHHHHHHH-
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT----------------VGSAATYGLLGVICTLGAV-   87 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-   87 (115)
                      +....+++++.|+|.+++.+++....+.++..++|.+...+...                ..|++.|.+.+.+..+..+ 
T Consensus        29 ~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~  108 (310)
T TIGR01272        29 VAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAII  108 (310)
T ss_pred             hhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455889999999999999999999999999999999988742                3577777756554444333 


Q ss_pred             HHHhhcccCCCC
Q psy5073          88 FVYTRVPETKNK   99 (115)
Q Consensus        88 ~~~~~~pet~~~   99 (115)
                      +.....||.+++
T Consensus       109 ~~~~~~p~~~~~  120 (310)
T TIGR01272       109 FAFLPLPELQEA  120 (310)
T ss_pred             HHHccCCCCCcc
Confidence            334456775443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.85  E-value=3.4e-05  Score=57.56  Aligned_cols=74  Identities=7%  Similarity=0.096  Sum_probs=51.8

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hcccC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYT-RVPET   96 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pet   96 (115)
                      ...+....++|+.|.|.|..+.++...........++.+...+....+|||.|++..++..+..+..++ +.|.+
T Consensus       147 ~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~  221 (599)
T PF06609_consen  147 VQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP  221 (599)
T ss_pred             HHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            334555568999999999988877765544444456666666655679999999998887777665443 34443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.84  E-value=0.00029  Score=49.52  Aligned_cols=62  Identities=15%  Similarity=-0.058  Sum_probs=49.6

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLG   85 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (115)
                      .+....+..|.+|.+.|+++.++......++..+++.+...+.+..+|++.+.+..+..++.
T Consensus       130 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~  191 (399)
T PRK05122        130 GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG  191 (399)
T ss_pred             cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            34444567899999999999999888888888899999999999999988777665554433

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.79  E-value=0.00035  Score=48.41  Aligned_cols=69  Identities=12%  Similarity=0.047  Sum_probs=54.0

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      .+....+..|.+|.+ |+++.++......++..++|.+.+.+.+..|++..|.+.++..++..+.. ...+
T Consensus       306 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~  374 (375)
T TIGR00899       306 AGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL-LLIK  374 (375)
T ss_pred             HHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-heec
Confidence            345556788998875 56999999999999999999999999999999888888777666665543 3444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.77  E-value=0.00019  Score=50.05  Aligned_cols=57  Identities=12%  Similarity=-0.046  Sum_probs=47.5

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHH
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYG   76 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   76 (115)
                      ..+..+....+++|.+|++.|++++|+......++..++|.+.+.+.+..| ++..+.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~  399 (405)
T TIGR00891       342 VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALA  399 (405)
T ss_pred             HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence            334455666788999999999999999999999999999999999999888 654433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.76  E-value=0.00083  Score=47.96  Aligned_cols=67  Identities=15%  Similarity=0.159  Sum_probs=51.6

Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------------hchhHHHHHHHHHH
Q psy5073          29 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT--------------------------VGSAATYGLLGVIC   82 (115)
Q Consensus        29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~   82 (115)
                      .++.|..|++.|++.+++......++..+++.+.+.+...                          .+|++.|.+.+.+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~  196 (410)
T TIGR00885       117 PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVV  196 (410)
T ss_pred             HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999998877532                          35888888887766


Q ss_pred             HHHHHHHH-hhccc
Q psy5073          83 TLGAVFVY-TRVPE   95 (115)
Q Consensus        83 ~~~~~~~~-~~~pe   95 (115)
                      ++..++.. ...||
T Consensus       197 ~~~~~~~~~~~~p~  210 (410)
T TIGR00885       197 LAVALLIMLTKMPA  210 (410)
T ss_pred             HHHHHHHHHhcCCC
Confidence            66544433 33565

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.75  E-value=8.8e-05  Score=51.05  Aligned_cols=53  Identities=17%  Similarity=0.135  Sum_probs=45.9

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT   74 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (115)
                      +..+..+.+..|.+|++.|+++.|+......++..++|.+.+.+.+..||++.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       326 GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            34444556789999999999999999999999999999999999999888754

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.74  E-value=0.0016  Score=45.75  Aligned_cols=72  Identities=13%  Similarity=-0.045  Sum_probs=54.9

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      -+..-.+..|..+.+.|+...+.......++..+++....++.+..+|+..|++.+.+.++..+...+..||
T Consensus       115 d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       115 DIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            344444567888888888888777777788888888888888999999999999988877766665444444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.72  E-value=0.00068  Score=49.64  Aligned_cols=69  Identities=13%  Similarity=-0.016  Sum_probs=52.6

Q ss_pred             hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH--HHHHHHHHHHHhhccc
Q psy5073          26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLG--VICTLGAVFVYTRVPE   95 (115)
Q Consensus        26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~pe   95 (115)
                      ....++...+|+++|+++.|+......++..+++.+.+. ....||++..-+..  .......+++.+++|.
T Consensus       134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~  204 (511)
T TIGR00806       134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKR  204 (511)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            445589999999999999999999999999999999999 56789987544332  2233334455567773

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.72  E-value=0.00089  Score=47.51  Aligned_cols=72  Identities=14%  Similarity=0.109  Sum_probs=53.8

Q ss_pred             hhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          26 IPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-------TVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        26 ~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ...++.+|+. ++++|++..++-.....++..+.+.+.+.+..       ..+|++.+.+.+++..+..++..+..||++
T Consensus       119 ~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       119 PYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             cHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            3445678887 57899999998887777777777666655553       347888888888888777777777788764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PTZ00207 hypothetical protein; Provisional

Probab=97.70  E-value=0.0012  Score=49.49  Aligned_cols=69  Identities=4%  Similarity=0.044  Sum_probs=51.5

Q ss_pred             hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      .....+.+.|| +.|++++|+......+++.+.+.+...+.. .+|++.|++.+++.++..++...++++.
T Consensus       140 ~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        140 GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            34456788997 789999999999998888766666555544 4677788888888888777777666554

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.67  E-value=0.0011  Score=47.04  Aligned_cols=86  Identities=15%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             cchhhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh--------------HHHHHHHHHH
Q psy5073          24 GPIPWFMMAEIIP-------LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSA--------------ATYGLLGVIC   82 (115)
Q Consensus        24 ~~~~~~~~~E~fp-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~   82 (115)
                      .+..+.+++|..|       .+.+++..|+......++..+++.+.+.+.+..|+.              +.+.+..++.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~  408 (437)
T TIGR00792       329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKILMFAVPALF  408 (437)
T ss_pred             HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHH
Confidence            4566677888865       566788899999999999999999999998876542              2333333344


Q ss_pred             HHHHHHHHh-hcccCCCCCHHHHHHHHhc
Q psy5073          83 TLGAVFVYT-RVPETKNKSFEAIQAELAM  110 (115)
Q Consensus        83 ~~~~~~~~~-~~pet~~~~~~~~~~~~~~  110 (115)
                      .+..++... ..|.++++ .+|++++.++
T Consensus       409 ~~~~~~~~~~~y~l~~~~-~~~i~~~l~~  436 (437)
T TIGR00792       409 LLLAAIIIGRFYKLTEKK-HAEIVEELEQ  436 (437)
T ss_pred             HHHHHHHHHHHeeCcHHH-HHHHHHHHhc
Confidence            444444443 66666544 3455555543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.63  E-value=0.0012  Score=46.25  Aligned_cols=68  Identities=7%  Similarity=0.038  Sum_probs=53.5

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVY   90 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (115)
                      ..|.......|..|++.++...+.......++..++|.+.+++.+..++++.|.+.+.+.++..+..+
T Consensus       302 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        302 LYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            34666667789999988888878777778899999999999999999998888887776665544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.61  E-value=0.0013  Score=46.26  Aligned_cols=72  Identities=10%  Similarity=-0.041  Sum_probs=51.8

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ...|...++..+.  .+.|+++.+.....+.++..++|.+.+.+.+..||+..|+..++..++.. +..+..||+
T Consensus       110 ~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~  181 (382)
T PRK11128        110 PLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML-LGQLLRPTI  181 (382)
T ss_pred             ccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHccCCC
Confidence            3455555555554  45688888888888899999999999999999999988887765444433 333445654

>TIGR00897 2A0118 polyol permease family

Probab=97.59  E-value=0.0014  Score=46.46  Aligned_cols=61  Identities=15%  Similarity=0.167  Sum_probs=50.4

Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q psy5073          29 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVY   90 (115)
Q Consensus        29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (115)
                      ...+|..| +.|+++.|+......++..++|.+.+.+.+..|+...+++.++..++..++..
T Consensus       338 ~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       338 AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            34677655 58999999999999999999999999999999988888888877666655543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.58  E-value=0.00022  Score=49.34  Aligned_cols=56  Identities=16%  Similarity=0.005  Sum_probs=43.3

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc-hhHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCY-SWSCLFLVSKVFMDLIDTVG-SAATYGLL   78 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   78 (115)
                      ..+....+++|.+|++.|+++.++.+.. ..++..++|.+.+.+.+..+ |+..++..
T Consensus       329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~  386 (394)
T TIGR00883       329 YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL  386 (394)
T ss_pred             HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence            3455667899999999999999986555 45677799999999999887 65544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2615|consensus

Probab=97.55  E-value=0.00018  Score=51.08  Aligned_cols=72  Identities=18%  Similarity=0.056  Sum_probs=51.4

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhchhHHHH--HHHHH-HHHHHHHHHhhcccC
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID---TVGSAATYG--LLGVI-CTLGAVFVYTRVPET   96 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~-~~~~~~~~~~~~pet   96 (115)
                      ++.-++++|+++.|.|+.+++.......++..++|.+++++..   ..|-.+.+.  ++..+ .........+++|||
T Consensus       139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            4455789999999999999999999999999999999999987   334222222  11112 222234556788998

>TIGR00896 CynX cyanate transporter

Probab=97.54  E-value=0.0024  Score=44.28  Aligned_cols=57  Identities=7%  Similarity=-0.063  Sum_probs=43.6

Q ss_pred             hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHH
Q psy5073          26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--GSAATYGLLGVICT   83 (115)
Q Consensus        26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   83 (115)
                      .....+.|.+| +.|+++.++......++..+++.+.+.+.+..  +|++.|...+...+
T Consensus       107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896       107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            33446788886 68999999999888899999999988887764  38877776655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09669 putative symporter YagG; Provisional

Probab=97.53  E-value=0.0044  Score=44.48  Aligned_cols=74  Identities=16%  Similarity=0.100  Sum_probs=50.9

Q ss_pred             ccchhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          23 IGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-------VGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        23 ~~~~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      ......++.+|+. ++++|.+..++-.....++..+.+.+...+...       .+|+..+.+++++..+..+...+..+
T Consensus       126 ~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~  205 (444)
T PRK09669        126 INVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTK  205 (444)
T ss_pred             hcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeE
Confidence            4445557889998 678899988888888777777777665555443       34555667777666666666666666


Q ss_pred             cC
Q psy5073          95 ET   96 (115)
Q Consensus        95 et   96 (115)
                      |.
T Consensus       206 e~  207 (444)
T PRK09669        206 ER  207 (444)
T ss_pred             Ee
Confidence            64

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.53  E-value=0.0015  Score=47.63  Aligned_cols=73  Identities=16%  Similarity=0.097  Sum_probs=58.3

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      ...|....+++|..|++.|++.+|+......++..+++.+........+|.+.|...++..++..++..+..|
T Consensus       397 ~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       397 MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3457777889999999999999999999988988888888887766667877787777777766666555444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.50  E-value=0.0018  Score=47.39  Aligned_cols=80  Identities=9%  Similarity=-0.008  Sum_probs=55.3

Q ss_pred             HHHhhcccchhhhhhcccCChhhHH--HHHHHHHHHHHHHHHHHHHHHHHH--HHhh-------------chhHHHHHHH
Q psy5073          17 AIFRIGIGPIPWFMMAEIIPLEAKL--WSSSLLMCYSWSCLFLVSKVFMDL--IDTV-------------GSAATYGLLG   79 (115)
Q Consensus        17 ~~~~~~~~~~~~~~~~E~fp~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~   79 (115)
                      +..+....| ..++++|++|++.|.  .+.++......+++.+++.++...  .+..             +.+..|.+-+
T Consensus       126 ~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a  204 (477)
T TIGR01301       126 VANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI  204 (477)
T ss_pred             HHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence            344433334 457899999999774  577777777778787777776654  2211             4456788877


Q ss_pred             HHHHHHHHHHHhhcccCC
Q psy5073          80 VICTLGAVFVYTRVPETK   97 (115)
Q Consensus        80 ~~~~~~~~~~~~~~pet~   97 (115)
                      +..++..++..+..||..
T Consensus       205 ~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       205 ILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHeeeeeccC
Confidence            777788788888888864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.50  E-value=0.00098  Score=48.75  Aligned_cols=86  Identities=17%  Similarity=0.214  Sum_probs=65.4

Q ss_pred             HHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHh
Q psy5073          13 CTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYT   91 (115)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   91 (115)
                      .++.+.+.++..+..-++.+|+.|++..+.-.|+....+...+.++|.+.+.+.+..| .|+.+....++.++..++ ..
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l-l~  465 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL-LF  465 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH-Hh
Confidence            3344455555667777899999999999999999999999999999999999999876 555666555555555444 45


Q ss_pred             hcccCCCC
Q psy5073          92 RVPETKNK   99 (115)
Q Consensus        92 ~~pet~~~   99 (115)
                      ..++.|++
T Consensus       466 ~v~~~~g~  473 (477)
T PF11700_consen  466 FVDVEKGR  473 (477)
T ss_pred             hccchhhh
Confidence            66665554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.47  E-value=0.0014  Score=48.44  Aligned_cols=73  Identities=14%  Similarity=0.034  Sum_probs=59.1

Q ss_pred             HHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073          16 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF   88 (115)
Q Consensus        16 ~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (115)
                      ......-..|...++++|+.|.+....+.++.....++...++|.+++.++...|..+.|.+.++..++....
T Consensus       113 ~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~  185 (524)
T PF05977_consen  113 LGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILA  185 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444567777899999999999999999999999999999999999999989888888777655544333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.44  E-value=0.0013  Score=47.98  Aligned_cols=70  Identities=13%  Similarity=0.003  Sum_probs=56.2

Q ss_pred             hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ..+.+..|+.|.+.+++..++......++..+.+.+.+++.+..||+..|.+..+..+...+... .++++
T Consensus       336 ~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~-~~~~~  405 (491)
T PRK11010        336 AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLL-VCRQT  405 (491)
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence            34567889999999999999999999999888999999999999998777777777666655544 44543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.43  E-value=0.0022  Score=45.05  Aligned_cols=57  Identities=12%  Similarity=-0.032  Sum_probs=46.2

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVI   81 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (115)
                      ..|....+..|  +.+.|++..|.......++..++|.+.+.+.+..||+..|......
T Consensus       111 ~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       111 GMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             chhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            45555555544  2578899999999999999999999999999999999988776554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG0254|consensus

Probab=97.42  E-value=0.0029  Score=46.40  Aligned_cols=70  Identities=19%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--GSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      .+...+++|+-|++.|+.-.+.......++..++ ++......+.  +|+..+.+..+.+++..+. .++.||+
T Consensus       161 ~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes  232 (513)
T KOG0254|consen  161 VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES  232 (513)
T ss_pred             hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            3445689999999999999999988877544444 5555555553  8997777777777777666 7888986

>PRK11462 putative transporter; Provisional

Probab=97.38  E-value=0.0062  Score=44.18  Aligned_cols=83  Identities=12%  Similarity=0.140  Sum_probs=55.8

Q ss_pred             HHHHHHHhhcccchhhhhhcccCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHHHHHH
Q psy5073          13 CTIVAIFRIGIGPIPWFMMAEIIP-LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------GSAATYGLLGVICTL   84 (115)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~E~fp-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~   84 (115)
                      .++...+... .....++.+|+.+ +|+|.+..++-...+.++..+.+.+...+.+..       +|.....+++++.++
T Consensus       117 ~~~~~~~t~~-~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i  195 (460)
T PRK11462        117 TLLTLLYTVV-NIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFM  195 (460)
T ss_pred             HHHHHHHHHH-hccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHH
Confidence            3344444443 3445568899996 999999999999888888888877776665543       355555666666555


Q ss_pred             HHHHHHhhcccC
Q psy5073          85 GAVFVYTRVPET   96 (115)
Q Consensus        85 ~~~~~~~~~pet   96 (115)
                      ...+.+...+|.
T Consensus       196 ~~~i~~~~~kE~  207 (460)
T PRK11462        196 MLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHhcceec
Confidence            555555556664

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.35  E-value=0.0019  Score=46.15  Aligned_cols=86  Identities=15%  Similarity=0.038  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHhhcccchhhhhhcccCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHH
Q psy5073           9 IFSVCTIVAIFRIGIGPIPWFMMAEIIP-LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------GSAATYGLLGV   80 (115)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~E~fp-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~   80 (115)
                      .+...++...++.. .....++.+|+.+ +++|.+..+.-.....++..+...+.+.+.+..       +|++...+.++
T Consensus       107 ~~~~~l~~~~~t~~-~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i  185 (428)
T PF13347_consen  107 FVFYILFDIAYTFV-QIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI  185 (428)
T ss_pred             HHHHHHHHHhhhhc-cCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence            33344444455544 3344578999997 579999999998888887777777777766543       47777888888


Q ss_pred             HHHHHHHHHHhhccc
Q psy5073          81 ICTLGAVFVYTRVPE   95 (115)
Q Consensus        81 ~~~~~~~~~~~~~pe   95 (115)
                      +.++..++..+..+|
T Consensus       186 v~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  186 VGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHhhhhhheeee
Confidence            888888888888888

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.33  E-value=0.0028  Score=46.94  Aligned_cols=76  Identities=13%  Similarity=0.037  Sum_probs=57.6

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH-hhcccCCC
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVY-TRVPETKN   98 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet~~   98 (115)
                      ......+.+-+..|.+.|++..|+..+....+..++..+.+.+.+..|.+..+.+.++..++..++.. ..+|+.++
T Consensus       324 ~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~  400 (524)
T PF05977_consen  324 ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE  400 (524)
T ss_pred             HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            33444566789999999999999999999999999999999999999988887776665554444433 23454433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.32  E-value=0.00072  Score=48.15  Aligned_cols=56  Identities=16%  Similarity=0.109  Sum_probs=46.4

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHH
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGV   80 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   80 (115)
                      +..+....|.+|++.|+++.|+.....+++++++|.+.+.+.+..| |++.+++.++
T Consensus       352 ~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       352 AIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             hHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence            3344556789999999999999999999999999999999988764 8777765544

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10504 putative transporter; Provisional

Probab=97.29  E-value=0.0023  Score=46.04  Aligned_cols=47  Identities=13%  Similarity=-0.027  Sum_probs=39.5

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS   71 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (115)
                      +.......+..|+|.|+++.|+......++..+++.+.+.+.+..+.
T Consensus       372 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        372 SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34446778999999999999999999999999999998888776554

>KOG3764|consensus

Probab=97.25  E-value=0.00064  Score=48.64  Aligned_cols=76  Identities=12%  Similarity=0.130  Sum_probs=65.9

Q ss_pred             chhhhhhcccCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073          25 PIPWFMMAEIIPLEA-KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKS  100 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  100 (115)
                      ....+++++.||.+. |++++|+.-..-.++-.++|.+++.+.+..|-+..|.+.++++++...+..+.++.++.++
T Consensus       178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            344467899998876 6999999999999999999999999999999989999999999999999888887765443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.10  E-value=0.0035  Score=42.94  Aligned_cols=48  Identities=17%  Similarity=0.021  Sum_probs=42.0

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG   70 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (115)
                      ..+....++.|.+|++.|++..|+......++..+++.+.+.+.+..|
T Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       318 INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            456666788999999999999999999999999999999999887643

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.08  E-value=0.0074  Score=43.47  Aligned_cols=70  Identities=13%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             hhcccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5073          30 MMAEIIPLEAKLWSSSLLM-CYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNK   99 (115)
Q Consensus        30 ~~~E~fp~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   99 (115)
                      |+++.||+|..++...+.. ....++..+.+.+.+.+.++.|.+.+|++.+.+.+...++..+.+++.++.
T Consensus       336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            7899999999999999874 444688899999999999999998899999999888888888888776553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.07  E-value=0.01  Score=41.61  Aligned_cols=45  Identities=4%  Similarity=-0.177  Sum_probs=36.8

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV   69 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (115)
                      +.....+.|..|++.|++++++......++..+++.+.+.+.+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633        113 VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            333345678899999999999999999999999999998886653

>PRK03699 putative transporter; Provisional

Probab=97.07  E-value=0.0032  Score=44.39  Aligned_cols=65  Identities=11%  Similarity=-0.029  Sum_probs=49.0

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF   88 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (115)
                      ..+....+..|..|. .+++..+.......++..++|.+.+++.+..|++..++..+....+....
T Consensus       311 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        311 IYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            344444566777764 46777888888888999999999999999999988887777665555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.05  E-value=0.0065  Score=48.27  Aligned_cols=72  Identities=8%  Similarity=0.016  Sum_probs=46.2

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      .+....++.|..|++.|++++|+......++..+++.+...+... .++...+.+.+.+.++..++.....|+
T Consensus       340 ~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (1146)
T PRK08633        340 IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPD  412 (1146)
T ss_pred             hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            344557788999999999999999988888777776666555432 234444555544444443333333343

>PRK10054 putative transporter; Provisional

Probab=97.05  E-value=0.0078  Score=42.67  Aligned_cols=71  Identities=13%  Similarity=0.134  Sum_probs=53.5

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      .|.....+.|..|++.|++..+... ..+++..++|.+.+.+.+..|....|.+.+...++..++..+-+.|
T Consensus       316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (395)
T PRK10054        316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRA  386 (395)
T ss_pred             HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhcccc
Confidence            3455557889999999999988644 5678999999999999999987777777766666665555544444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.05  E-value=0.0039  Score=44.23  Aligned_cols=45  Identities=11%  Similarity=-0.307  Sum_probs=39.9

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV   69 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (115)
                      |....++.|..|++.|++++|+......++..++|.+.+.+.+..
T Consensus       316 p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        316 PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence            444567889999999999999999999999999999999998874

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.02  E-value=0.001  Score=47.78  Aligned_cols=69  Identities=14%  Similarity=0.145  Sum_probs=55.9

Q ss_pred             hhhhhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          26 IPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      +......|..|.+.-+++.|+...++.+ ++..+....+++.+..||.+.|.++.+.+++..++......
T Consensus       366 LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         366 LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            4445678999999999999999999888 77777778888888899999998888877777666554443

>KOG2816|consensus

Probab=96.99  E-value=0.0064  Score=44.45  Aligned_cols=77  Identities=17%  Similarity=0.124  Sum_probs=67.2

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKS  100 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  100 (115)
                      .....+++++....+.|....|+.....+.+..++|.+........|...++.+-.+..++...+....+||+..++
T Consensus       130 ~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~  206 (463)
T KOG2816|consen  130 FSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK  206 (463)
T ss_pred             hhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence            34555789999999999999999999999999999999999999988877888888888888888889999975443

>KOG2504|consensus

Probab=96.96  E-value=0.004  Score=46.00  Aligned_cols=64  Identities=9%  Similarity=-0.008  Sum_probs=54.3

Q ss_pred             hcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          31 MAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        31 ~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      +--.+..+.|+.+.|++.....++.++.|.+..++.+..||++.+.+++.+.+-........-|
T Consensus       159 iv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  159 ILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             hhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3346778899999999999999999999999999999999999999998887666666555555

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.96  E-value=0.014  Score=41.04  Aligned_cols=59  Identities=12%  Similarity=-0.024  Sum_probs=47.3

Q ss_pred             hhhcccCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q psy5073          29 FMMAEIIPL-EAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAV   87 (115)
Q Consensus        29 ~~~~E~fp~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (115)
                      ....+..++ +.|++.+++......++..++|.+.+.+.+..|++..|...+.+.++..+
T Consensus       326 ~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       326 TAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            344566665 89999999999999999999999999999999988777776665555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0253|consensus

Probab=96.84  E-value=0.013  Score=42.11  Aligned_cols=75  Identities=11%  Similarity=0.007  Sum_probs=53.6

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      +.+..|.-.++-.|..|...|...+-.. ....++......+.-..+.+.||+|..+..... +......+++.||.
T Consensus       179 g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~p-l~~~a~f~~w~~ES  253 (528)
T KOG0253|consen  179 GVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTP-LMFAARFLVWVYES  253 (528)
T ss_pred             cCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhH-HHHHHHHHhhcccC
Confidence            3344566666778999999999988777 555677777777777778889999776666644 33334446788886

>PRK10133 L-fucose transporter; Provisional

Probab=96.83  E-value=0.03  Score=40.40  Aligned_cols=42  Identities=10%  Similarity=-0.003  Sum_probs=32.3

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI   66 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (115)
                      +....++.|..|.+.|...+++......++..+++.++..+.
T Consensus       136 ~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456778888888888899998888888888888876554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.81  E-value=0.01  Score=47.39  Aligned_cols=66  Identities=3%  Similarity=-0.135  Sum_probs=47.7

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVF   88 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   88 (115)
                      ..+...+++.|..|++.|++.+|+......++..+++.+...+... .+....+.+.+...++...+
T Consensus       351 ~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  417 (1140)
T PRK06814        351 YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAIL  417 (1140)
T ss_pred             hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            3444567889999999999999999999999899999988887643 45554555444443443333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=96.81  E-value=0.028  Score=39.56  Aligned_cols=62  Identities=11%  Similarity=0.058  Sum_probs=48.0

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMC-YSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF   88 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (115)
                      +....++++. |++.|++++++... ...++..+++.+.+++.+..|. ..|+..+.+.++..++
T Consensus       312 ~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       312 LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            3444577887 99999999999754 4568889999999999999886 5777777766655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.79  E-value=0.014  Score=41.13  Aligned_cols=72  Identities=10%  Similarity=-0.052  Sum_probs=56.4

Q ss_pred             HHhhcccchhhhhhcccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLE---AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFV   89 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~---~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (115)
                      .-.++.=|....+.+|+|+.+   .|.++..+.+.+.++++.++....+++.++.+|.+.|.+.++.++++.+..
T Consensus        45 ~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   45 VGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence            334455577777899999776   577777888999999999999999999999999888888887777665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00895 2A0115 benzoate transport

Probab=96.79  E-value=0.006  Score=42.31  Aligned_cols=44  Identities=11%  Similarity=-0.041  Sum_probs=37.9

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL   65 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~   65 (115)
                      ...+....+.+|.+|++.|+++.|+......++..++|.+.+++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       354 GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            34566677899999999999999999999999999999887764

>PRK10091 MFS transport protein AraJ; Provisional

Probab=96.78  E-value=0.026  Score=39.70  Aligned_cols=65  Identities=2%  Similarity=-0.314  Sum_probs=43.9

Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          29 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      ....+..|.+.++.+.  ......++..++|.+.+.+.+. .++++.+.+.+....+.........+.
T Consensus       313 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (382)
T PRK10091        313 LLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRY  378 (382)
T ss_pred             HHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            3455666666666553  4556688999999999999885 678877777766666555554444443

>TIGR00788 fbt folate/biopterin transporter

Probab=96.78  E-value=0.008  Score=43.76  Aligned_cols=53  Identities=15%  Similarity=0.165  Sum_probs=43.7

Q ss_pred             HHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073          17 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG   70 (115)
Q Consensus        17 ~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (115)
                      +.++....+. ..++.|..|++.+++..++.....+++..+++.++..+.+..|
T Consensus       363 ~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       363 VLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3444444444 4678999999999999999999999999999999999988766

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=96.77  E-value=0.008  Score=43.73  Aligned_cols=61  Identities=13%  Similarity=0.029  Sum_probs=39.9

Q ss_pred             hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q psy5073          27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFV   89 (115)
Q Consensus        27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (115)
                      .+.+.+|+. ++.|++..|+....+.+++.+.+.+.. .....+|+..|.+.+++.++..++.
T Consensus       369 ~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        369 TFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             hcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHH
Confidence            445567765 478999999987776677766666543 1112357778888877666665544

>KOG0569|consensus

Probab=96.75  E-value=0.0086  Score=43.99  Aligned_cols=70  Identities=16%  Similarity=0.052  Sum_probs=49.3

Q ss_pred             hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKV-FMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ....++.|+-|.+.||....+......++..++..+ .+.+... ..|++.+....+.+++.. +...++||+
T Consensus       136 ~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PES  207 (485)
T KOG0569|consen  136 LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPES  207 (485)
T ss_pred             HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence            344689999999999999988888777777777454 3444433 457666666666555554 445789996

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=96.68  E-value=0.005  Score=44.35  Aligned_cols=62  Identities=6%  Similarity=0.030  Sum_probs=45.5

Q ss_pred             hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHHH
Q psy5073          27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV---GSAATYGLLGVICTLGAVFV   89 (115)
Q Consensus        27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   89 (115)
                      .+....|..|. .++...|+....+.+++.+.|.+.+.+.+..   +|...|.+.++..++..++.
T Consensus       382 ~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       382 VLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             hhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            33444566654 8999999999999999999999998887653   36667777776666665443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.67  E-value=0.023  Score=41.65  Aligned_cols=88  Identities=19%  Similarity=0.182  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHH
Q psy5073           8 PIFSVCTIVAIFRIGIGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------GSAATYGLLG   79 (115)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~   79 (115)
                      +.+...++...+.. .+-...++.+|+. .+++|.+-.+.=.....++..+...+.+++++..       |++.+-.+++
T Consensus       115 a~vtY~l~~l~YT~-vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~  193 (467)
T COG2211         115 ALVTYMLLGLGYTL-VNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLG  193 (467)
T ss_pred             HHHHHHHHHHHHHh-eeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence            33444444445554 3444557889998 7899999999999999998899988888887753       4555566666


Q ss_pred             HHHHHHHHHHHhhcccC
Q psy5073          80 VICTLGAVFVYTRVPET   96 (115)
Q Consensus        80 ~~~~~~~~~~~~~~pet   96 (115)
                      ++.++..+++++-.+|.
T Consensus       194 vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         194 VIGVILLLFCFFNVKER  210 (467)
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            66666666666666664

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.58  E-value=0.03  Score=39.48  Aligned_cols=55  Identities=7%  Similarity=0.031  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          41 LWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      +...|.......++..++|.+.+.+.+ .+|+..|++.+.+.++..++.....||+
T Consensus       132 ~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       132 NFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             ccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            345567777778888889988887654 5899999888877777666555445553

>PRK10429 melibiose:sodium symporter; Provisional

Probab=96.58  E-value=0.15  Score=37.16  Aligned_cols=73  Identities=10%  Similarity=0.091  Sum_probs=46.6

Q ss_pred             cchhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          24 GPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------GSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        24 ~~~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      .....+..+|+. ++++|.+..++-.....+++.+.+.+...+.+..       +++....+.+++..+..+...+..||
T Consensus       124 ~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e  203 (473)
T PRK10429        124 DIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHE  203 (473)
T ss_pred             cchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcee
Confidence            444557789999 6999999998876666666666655555443322       34445555555555555555555676


Q ss_pred             C
Q psy5073          96 T   96 (115)
Q Consensus        96 t   96 (115)
                      .
T Consensus       204 ~  204 (473)
T PRK10429        204 V  204 (473)
T ss_pred             c
Confidence            4

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.54  E-value=0.022  Score=40.90  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=41.9

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSA   72 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (115)
                      +....++++|..|+|.|++..++.+...-++..++..+...+.+.....
T Consensus       107 ~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~  155 (403)
T PF03209_consen  107 GTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE  155 (403)
T ss_pred             HHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            3455568999999999999999999999999999999999888876543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.52  E-value=0.016  Score=40.81  Aligned_cols=63  Identities=13%  Similarity=0.140  Sum_probs=50.9

Q ss_pred             hhhcccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh
Q psy5073          29 FMMAEIIPLEAKLWSSSL-LMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYT   91 (115)
Q Consensus        29 ~~~~E~fp~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (115)
                      .+..|.+|++.|+++.+. ......++..+++.+.+++.+..|++..|.+.+++.++..++..+
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            356788899999887776 456678899999999999999999998998888887777665443

>TIGR00788 fbt folate/biopterin transporter

Probab=96.46  E-value=0.025  Score=41.24  Aligned_cols=74  Identities=16%  Similarity=0.018  Sum_probs=53.6

Q ss_pred             cccchhhhhhcccCChhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLW---SSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      ..-...-.+..|..+ |.+..   .++..+....++..+++.+.+.+.+..+|+..|++.+...++. .+...+.||.+
T Consensus       136 ~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~  212 (468)
T TIGR00788       136 LYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR  212 (468)
T ss_pred             HHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence            334556668889998 55544   3445555556788999999999999899999998888777766 44456778864

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.39  E-value=0.0098  Score=43.67  Aligned_cols=73  Identities=12%  Similarity=0.086  Sum_probs=45.7

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhchhHHHHHHHHHHHHHHH
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI----------DTVGSAATYGLLGVICTLGAV   87 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~   87 (115)
                      .......|....++.+..|++.|++.+|+......++..++..+.....          ...+..+.|...++..++..+
T Consensus       394 ~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~  473 (500)
T PRK09584        394 IGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAV  473 (500)
T ss_pred             HHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            3444456777778899999999999999887666666666555553221          111244566666665554444


Q ss_pred             HHH
Q psy5073          88 FVY   90 (115)
Q Consensus        88 ~~~   90 (115)
                      +..
T Consensus       474 ~~~  476 (500)
T PRK09584        474 LML  476 (500)
T ss_pred             HHH
Confidence            333

>KOG3762|consensus

Probab=96.39  E-value=0.0038  Score=46.37  Aligned_cols=66  Identities=15%  Similarity=0.115  Sum_probs=54.8

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYS-WSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF   88 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (115)
                      .+....+|++..-|++.|.+++++..... .++-..++++++.+...++-+.+|.++++.+++..++
T Consensus       476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence            34445578999999999999999997666 6888999999999999999888898888877666554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=96.32  E-value=0.13  Score=37.01  Aligned_cols=64  Identities=17%  Similarity=0.046  Sum_probs=52.7

Q ss_pred             hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      -.+| .-++.+..+.++.....+++...+..+++.+.++.|+....++-+...++...+.....+
T Consensus       324 ~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         324 RLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             Hhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445 557999999999999999999999999999999999988888888777777666544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=96.31  E-value=0.053  Score=38.29  Aligned_cols=62  Identities=10%  Similarity=-0.187  Sum_probs=41.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          34 IIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        34 ~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      .-+++.|++..++......++..+++.+...+.+..++....+...+..++...+...+.++
T Consensus       336 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK15402        336 FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLKD  397 (406)
T ss_pred             hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34558999999999999999999999999998887776443333333333333333334433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.28  E-value=0.0022  Score=46.95  Aligned_cols=70  Identities=16%  Similarity=0.085  Sum_probs=55.6

Q ss_pred             cchhhhhhcccCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          24 GPIPWFMMAEIIPLEA--KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      =|..-.+++|++|++.  |..+.++.++.-++++.+.|.+.+++.+..||+..|...++-+.+..+. +.+++
T Consensus       135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~-f~~~~  206 (498)
T COG3104         135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI-FLLGR  206 (498)
T ss_pred             cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH-HHHcc
Confidence            3556668999996543  7788888899999999999999999999999998888888766666444 44444

>PRK09528 lacY galactoside permease; Reviewed

Probab=96.27  E-value=0.026  Score=40.14  Aligned_cols=57  Identities=9%  Similarity=0.016  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          38 EAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        38 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      +.|+...|.......++..++|.+.+.+.+ .+|++.|+..+...++..++.++..||
T Consensus       137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~  193 (420)
T PRK09528        137 RRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPD  193 (420)
T ss_pred             hhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhccccc
Confidence            345556677777788889999999888865 488888888777766665555444444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.26  E-value=0.081  Score=37.45  Aligned_cols=63  Identities=14%  Similarity=0.084  Sum_probs=42.9

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVY   90 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (115)
                      .+....++.|.+|.+.++    +......++....+.+.+.+.+..||+..|...+.+.++..++..
T Consensus       325 ~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        325 VALLMALCNRSFSATQYA----LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            344445777888866554    333344555555667899999999999888888877777655543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.21  E-value=0.019  Score=38.70  Aligned_cols=40  Identities=5%  Similarity=0.058  Sum_probs=32.7

Q ss_pred             hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073          30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG   70 (115)
Q Consensus        30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (115)
                      .-.+.|| +.|+++.|+......+++.+.+.+...+.....
T Consensus       120 t~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~  159 (250)
T PF06813_consen  120 TCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP  159 (250)
T ss_pred             HHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCCh
Confidence            3458998 579999999999999989888888877776643

>PRK09669 putative symporter YagG; Provisional

Probab=96.16  E-value=0.12  Score=37.07  Aligned_cols=50  Identities=16%  Similarity=0.093  Sum_probs=35.8

Q ss_pred             cccchhhhhhcccCChhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy5073          22 GIGPIPWFMMAEIIPLEA-------KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS   71 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~-------R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (115)
                      ...+..+++++|..+.++       .+...|+......++.++++.+.+.+.+..|.
T Consensus       335 ~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        335 LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            445778888999987433       33445666667788899999998888876543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.13  E-value=0.025  Score=40.87  Aligned_cols=86  Identities=16%  Similarity=0.084  Sum_probs=60.2

Q ss_pred             HHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHhh
Q psy5073          14 TIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS-AATYGLLGVICTLGAVFVYTR   92 (115)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   92 (115)
                      ++.+.+-.+..+..-.+.+++.|++.-+...|+....+......+|.+...+.+..|- +..+....++ +...+.....
T Consensus       349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl-l~iGl~~L~~  427 (438)
T COG2270         349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL-LLIGLLLLLR  427 (438)
T ss_pred             HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH-HHhhHhhEEe
Confidence            3333444455666777999999999999999999999999999999999999887653 3333333333 3333444566


Q ss_pred             cccCCCCC
Q psy5073          93 VPETKNKS  100 (115)
Q Consensus        93 ~pet~~~~  100 (115)
                      .|+.+.++
T Consensus       428 v~~~~~~~  435 (438)
T COG2270         428 VKVPGRRE  435 (438)
T ss_pred             ecCCCCcc
Confidence            77654443

>PRK09848 glucuronide transporter; Provisional

Probab=96.13  E-value=0.13  Score=37.04  Aligned_cols=47  Identities=11%  Similarity=0.073  Sum_probs=35.3

Q ss_pred             cchhhhhhcccCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073          24 GPIPWFMMAEIIPLE-------AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG   70 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~-------~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (115)
                      .+...+..+|.-|.+       .++...|+......++..+++.+.+.+.+..|
T Consensus       337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            355666778887754       35888888888888999999888888776544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.96  E-value=7.2e-05  Score=53.38  Aligned_cols=74  Identities=18%  Similarity=0.092  Sum_probs=51.1

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT---VGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      +..+....++.|..|++.|+...++......++..++..+.....+.   .+|+..+....+..++. .+...++||+
T Consensus       118 ~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pES  194 (451)
T PF00083_consen  118 GAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPES  194 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            34456667899999999999999988877766666666555444333   34887766666655554 3445788986

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.62  E-value=0.39  Score=36.86  Aligned_cols=67  Identities=10%  Similarity=0.041  Sum_probs=51.3

Q ss_pred             ccchhhhhhcccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLE---AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------GSAATYGLLGVICTLGAVFV   89 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~---~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~   89 (115)
                      .-|...+...|+|+.+   .|.+...+.++..++++.+++.+.+++.+..       +|...|.+.++.+++..++.
T Consensus       102 iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       102 IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence            3466667888999753   4788888999999999999999999987553       57778887777766665543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=95.60  E-value=0.14  Score=37.76  Aligned_cols=76  Identities=7%  Similarity=0.036  Sum_probs=56.5

Q ss_pred             ccchhhhhhcccCChhhH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Q psy5073          23 IGPIPWFMMAEIIPLEAK--------------------------LWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------   69 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   69 (115)
                      ......++++|+-+++.+                          ++-.+.....+.+++.+.-.+...+....       
T Consensus       143 ~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~  222 (477)
T PF11700_consen  143 SNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNT  222 (477)
T ss_pred             HHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence            345566789999999988                          89999999888888888777766654432       


Q ss_pred             -chhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          70 -GSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        70 -~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                       +.+..+.+.++.-++..+-.+++.||.++
T Consensus       223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  223 WAIRVAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence             23556777777777777777788888754

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=95.55  E-value=0.15  Score=37.54  Aligned_cols=79  Identities=11%  Similarity=-0.033  Sum_probs=58.5

Q ss_pred             hhcccchhhhhhcccCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAK--LWSSSLLMCYSWSCLFLVSKVFMDLIDTVG--SAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      .....++|+++++|..|.+.|  +..+|+....--+-..+.....+.+.+..|  ..+.+.+-++..++..++..+.+|+
T Consensus       394 ~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       394 LAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            334568899999999996555  777788777766667777766666555544  3357788888888888898899998


Q ss_pred             CCC
Q psy5073          96 TKN   98 (115)
Q Consensus        96 t~~   98 (115)
                      ++.
T Consensus       474 ~~~  476 (477)
T TIGR01301       474 PRV  476 (477)
T ss_pred             CCC
Confidence            764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=95.37  E-value=0.4  Score=34.03  Aligned_cols=63  Identities=11%  Similarity=-0.020  Sum_probs=44.1

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF   88 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (115)
                      +.....+.+..| +.+++..++......++..+++.+.+.+.+..|.+..+...+.+..+..++
T Consensus       324 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        324 VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            333345677777 445566677777778899999999999999888876666665555444443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=95.36  E-value=0.32  Score=33.72  Aligned_cols=42  Identities=17%  Similarity=0.037  Sum_probs=29.3

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL   65 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~   65 (115)
                      ..+.......|.+| +.|+++.++........+.+.+.+.+.+
T Consensus       317 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       317 ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34555566788887 6799999998887776666666665533

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11043 putative transporter; Provisional

Probab=95.17  E-value=0.3  Score=34.38  Aligned_cols=44  Identities=25%  Similarity=0.176  Sum_probs=33.1

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT   68 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (115)
                      .+.......|.+| +.|++++|+.......++..++.+.+.+.+.
T Consensus       314 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        314 YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            3444445557776 5799999999988888888888888887664

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.07  E-value=0.21  Score=36.17  Aligned_cols=66  Identities=14%  Similarity=0.086  Sum_probs=52.4

Q ss_pred             hhhcccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          29 FMMAEII---PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        29 ~~~~E~f---p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      +...|.-   |.+ |+.-++..+..-.+++.++..+.+++.+..+.++.|.+.+.+..+..+...+..+|
T Consensus       109 a~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  109 ALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            3455655   555 88889999888889999999999999999998888888887777776666666666

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.06  E-value=0.28  Score=35.56  Aligned_cols=77  Identities=19%  Similarity=0.099  Sum_probs=53.2

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch--------hHHHHHHHHHHHHHHHHHHh
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS--------AATYGLLGVICTLGAVFVYT   91 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~   91 (115)
                      ....-|.. ...+|+.|+..-++..++.....+++..++..++..+.+..+.        .+...+..+..++. +....
T Consensus       333 ~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~-l~ll~  410 (433)
T PF03092_consen  333 MIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLP-LPLLF  410 (433)
T ss_pred             HHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH-HHHHH
Confidence            33344444 4689999999999999999999999999999999998876552        22344444444333 33345


Q ss_pred             hcccCCC
Q psy5073          92 RVPETKN   98 (115)
Q Consensus        92 ~~pet~~   98 (115)
                      ++|+.++
T Consensus       411 lLp~~~~  417 (433)
T PF03092_consen  411 LLPPQKR  417 (433)
T ss_pred             HcCCCch
Confidence            6676443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=95.02  E-value=0.4  Score=34.03  Aligned_cols=52  Identities=10%  Similarity=-0.006  Sum_probs=36.3

Q ss_pred             hhhhhcccCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy5073          27 PWFMMAEIIPLEA-KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLG   79 (115)
Q Consensus        27 ~~~~~~E~fp~~~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (115)
                      ....+.|.-|++. |+++.++......++..++..+...+ ...|.+..+.+.+
T Consensus       314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  366 (393)
T PRK11195        314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVG  366 (393)
T ss_pred             HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHH
Confidence            4455677766655 79999999988888888888887755 5556555554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=94.94  E-value=0.59  Score=32.87  Aligned_cols=62  Identities=8%  Similarity=0.075  Sum_probs=41.6

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCY-SWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF   88 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (115)
                      +....+..+. +++.+++.+++.... ...+..++|.+.+.+.+..++ ..++..+++.+....+
T Consensus       312 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        312 LAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            3343456676 666678888887644 345668899999999999887 4666665555444333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=94.87  E-value=0.1  Score=35.53  Aligned_cols=40  Identities=15%  Similarity=0.030  Sum_probs=33.8

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVS   59 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~   59 (115)
                      .....+....+..|.+|++.|++..|+......++..++|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  313 FGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            3334677778899999999999999999999888888776

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG2504|consensus

Probab=94.85  E-value=0.012  Score=43.59  Aligned_cols=80  Identities=14%  Similarity=0.168  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHH
Q psy5073          10 FSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVF   88 (115)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   88 (115)
                      +..+++.++...+........+.|+.+.+.-..+.|+......++..++|.+.+++.+..+ +...|...++..++....
T Consensus       392 ~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~  471 (509)
T KOG2504|consen  392 IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL  471 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence            3333334344444556665678999999999999999999999999999999998888776 766777777766666544


Q ss_pred             H
Q psy5073          89 V   89 (115)
Q Consensus        89 ~   89 (115)
                      .
T Consensus       472 ~  472 (509)
T KOG2504|consen  472 L  472 (509)
T ss_pred             H
Confidence            3

>PRK11462 putative transporter; Provisional

Probab=94.76  E-value=0.47  Score=34.56  Aligned_cols=47  Identities=17%  Similarity=0.203  Sum_probs=31.0

Q ss_pred             ccchhhhhhcccCC-----hhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Q psy5073          23 IGPIPWFMMAEIIP-----LEAKLWSSSLL--MCYSWSCLFLVSKVFMDLIDTV   69 (115)
Q Consensus        23 ~~~~~~~~~~E~fp-----~~~R~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   69 (115)
                      ..+..+.+.+|.-.     +..|..+..++  .....++..+++.+.+.+.+..
T Consensus       335 ~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~  388 (460)
T PRK11462        335 VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG  388 (460)
T ss_pred             HHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34555677777766     34666666444  3666788888888887777653

>PRK10429 melibiose:sodium symporter; Provisional

Probab=94.70  E-value=0.73  Score=33.58  Aligned_cols=48  Identities=13%  Similarity=0.042  Sum_probs=32.6

Q ss_pred             ccchhhhhhcccCC-----hhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073          23 IGPIPWFMMAEIIP-----LEAKLWSS--SLLMCYSWSCLFLVSKVFMDLIDTVG   70 (115)
Q Consensus        23 ~~~~~~~~~~E~fp-----~~~R~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (115)
                      ..+..+++++|..+     +..|..+.  |.......++..+++.+.+.+.+..|
T Consensus       341 ~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        341 FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34566778899944     55555555  44455567888888888888876544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=94.50  E-value=0.71  Score=34.01  Aligned_cols=54  Identities=6%  Similarity=0.113  Sum_probs=37.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhh
Q psy5073          39 AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTR   92 (115)
Q Consensus        39 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   92 (115)
                      .-+...|+..+.+.+++++.|.+.+...+..| +...|+.+....++...+.+.+
T Consensus       399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        399 ETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888999999999988888877654 4445666666555555544433

>KOG4686|consensus

Probab=94.27  E-value=0.12  Score=36.29  Aligned_cols=59  Identities=12%  Similarity=0.082  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073           8 PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG   70 (115)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (115)
                      .+..+.+-....++..+|.    ++-+.|.+.-+++.|++....+++-.+.|.+.+.+.+..|
T Consensus       358 ~m~~lGLsysllAcslWP~----va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  358 SMTFLGLSYSLLACSLWPC----VASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHHHhhhHHHHHHHHhhh----hhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            3333333333444444554    5667788999999999999999999999999999998766

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=94.27  E-value=0.78  Score=31.87  Aligned_cols=24  Identities=17%  Similarity=0.058  Sum_probs=17.4

Q ss_pred             hhhhhcccCChhhHHHHHHHHHHHH
Q psy5073          27 PWFMMAEIIPLEAKLWSSSLLMCYS   51 (115)
Q Consensus        27 ~~~~~~E~fp~~~R~~~~~~~~~~~   51 (115)
                      ...+..|..| +.|+++.++.....
T Consensus       308 ~~~~~~~~~~-~~~g~~~~~~~~~~  331 (377)
T PRK11102        308 AMAVILDEFP-HMAGTASSLAGTLR  331 (377)
T ss_pred             HHHHHhcccc-ccchHHHHHHHHHH
Confidence            3345678777 88999999876554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=94.23  E-value=1.1  Score=33.06  Aligned_cols=50  Identities=8%  Similarity=0.080  Sum_probs=42.5

Q ss_pred             HHhhcccc-hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073          18 IFRIGIGP-IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID   67 (115)
Q Consensus        18 ~~~~~~~~-~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (115)
                      .++...-+ +.|.+.+|+++.++-.+-.++...+++++..+++.+..++.+
T Consensus       140 lw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       140 LWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444 889999999999999999999999999999999988888763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR01272 gluP glucose/galactose transporter

Probab=94.17  E-value=0.42  Score=32.99  Aligned_cols=59  Identities=17%  Similarity=0.195  Sum_probs=41.8

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLL   78 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (115)
                      ++.....|.......|.+|.+ .+++.++. ..+.+++.+.|.+.+.+.+..|.+..+++.
T Consensus       242 ~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~  300 (310)
T TIGR01272       242 LFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP  300 (310)
T ss_pred             HHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence            334445566666677888865 34566664 566788999999999999988877666633

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=94.10  E-value=0.34  Score=34.01  Aligned_cols=48  Identities=17%  Similarity=0.150  Sum_probs=29.6

Q ss_pred             hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy5073          30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGV   80 (115)
Q Consensus        30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (115)
                      ...++.|.+.|.   |.......++..+++.+.+++.+..++.......+.
T Consensus       314 ~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        314 MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            345666765554   444444556677778888888887776654444443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=94.07  E-value=0.69  Score=33.06  Aligned_cols=65  Identities=14%  Similarity=0.037  Sum_probs=39.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH-HHHhhcccCCCCCHHHH
Q psy5073          39 AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAV-FVYTRVPETKNKSFEAI  104 (115)
Q Consensus        39 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pet~~~~~~~~  104 (115)
                      .|+++.++...........++....++... +..+.+...+.+..+... ...+..++.|+++..|.
T Consensus       344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (413)
T PRK15403        344 PKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVVFTLAGLLNRVRQHQAAEL  409 (413)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence            478888888888888888888888877665 434555555444333323 33333444444444443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=93.65  E-value=0.59  Score=33.65  Aligned_cols=42  Identities=10%  Similarity=-0.071  Sum_probs=36.1

Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073          29 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG   70 (115)
Q Consensus        29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (115)
                      ....|.+|++.|+++.|+......+++.+++.+.+.+.++..
T Consensus       371 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~  412 (485)
T TIGR00711       371 TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNRT  412 (485)
T ss_pred             HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688999999999999999999999999999988877543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=93.62  E-value=1.3  Score=31.19  Aligned_cols=44  Identities=18%  Similarity=-0.107  Sum_probs=34.2

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT   68 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (115)
                      .|....+..|.+| +.|+++.++......+++.+++.+...+...
T Consensus       317 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        317 FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            4555566778887 5789999999888888888888887776544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=93.60  E-value=1.5  Score=32.41  Aligned_cols=71  Identities=15%  Similarity=0.106  Sum_probs=45.9

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhchhHHHHHHHHHHHHHHHHHHhh
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID----------TVGSAATYGLLGVICTLGAVFVYTR   92 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~   92 (115)
                      ..|....++.+..|++.++.++|+......+++.++..+......          .....+.|...++..++..++....
T Consensus       396 ~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~  475 (489)
T PRK10207        396 ISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM  475 (489)
T ss_pred             HhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555677889999999999999988877777777766644321          1112345666665555555544443


Q ss_pred             c
Q psy5073          93 V   93 (115)
Q Consensus        93 ~   93 (115)
                      .
T Consensus       476 ~  476 (489)
T PRK10207        476 V  476 (489)
T ss_pred             H
Confidence            3

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=93.34  E-value=0.52  Score=34.19  Aligned_cols=73  Identities=16%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhh
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTR   92 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   92 (115)
                      +.+.+-+++ +-.++.+||. +-+...|+..+++.++++..|.......+..| +...|+++....++..++....
T Consensus       327 ~~G~GnGsv-fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         327 FAGLGNGSV-FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HhccCcchh-eeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444 4568888877 55778899999999999999999999999887 6667887777777666654433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=93.26  E-value=0.25  Score=35.70  Aligned_cols=71  Identities=13%  Similarity=0.164  Sum_probs=49.2

Q ss_pred             HHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q psy5073          14 TIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGA   86 (115)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (115)
                      +..+.+...+.|.......+..|.+....+.  .....-+++.+.|++.+++.+..|....+.....++.+..
T Consensus       332 ~~ig~F~simfPTIfslal~~l~~~ts~~s~--~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         332 FLIGLFNSIMFPTIFSLALKNLGEHTSVGSG--LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHhHHHHHHHHHHHHhccCccccccce--eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            3345666677888888888888844333333  3334567899999999999999998777765555555544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=92.98  E-value=2.2  Score=31.74  Aligned_cols=49  Identities=12%  Similarity=0.035  Sum_probs=34.6

Q ss_pred             HHHhhcccchhhhhhcccCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy5073          17 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYS-WSCLFLVSKVFMDL   65 (115)
Q Consensus        17 ~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~~   65 (115)
                      ..--....|+..+.++++-|+|.|++.+|...... .++..++..+....
T Consensus       388 t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        388 GFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445567888889999999999999999986533 45555554444433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.97  E-value=2.7  Score=31.34  Aligned_cols=43  Identities=14%  Similarity=0.042  Sum_probs=39.4

Q ss_pred             chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073          25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID   67 (115)
Q Consensus        25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (115)
                      -+.|.+..|+++.++-.+-.++...+++++..++..+..++.+
T Consensus       163 lLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  163 LLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999998888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=92.27  E-value=2.7  Score=30.30  Aligned_cols=67  Identities=10%  Similarity=0.064  Sum_probs=53.0

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHh
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-GSAATYGLLGVICTLGAVFVYT   91 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   91 (115)
                      +.+-+..+-|-||.|. +.-+|++.....+++.+++.+..++.++. +|++...+.+...++..+....
T Consensus       117 nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP  184 (395)
T COG2807         117 NVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP  184 (395)
T ss_pred             HHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence            3445567888888664 67788888888899999999999998887 7999998888887777665443

>KOG2532|consensus

Probab=92.26  E-value=0.29  Score=35.99  Aligned_cols=64  Identities=6%  Similarity=-0.011  Sum_probs=50.5

Q ss_pred             hhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHHHHhh
Q psy5073          29 FMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT---VGSAATYGLLGVICTLGAVFVYTR   92 (115)
Q Consensus        29 ~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   92 (115)
                      .+.+-+- .++.-+..+|+......+.+++.|.+.+.+..+   ..|+++|.+.+.+.++..++..++
T Consensus       379 f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  379 FYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             hHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            3444444 778889999999999999999999999999843   479999999988888877554433

>KOG2325|consensus

Probab=92.10  E-value=1  Score=33.46  Aligned_cols=73  Identities=11%  Similarity=0.008  Sum_probs=52.4

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-----------hhHHHHHHHHHHHHHHHHHH
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--G-----------SAATYGLLGVICTLGAVFVY   90 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~   90 (115)
                      ....-.|+++....+.|.++++.......++..++|.+.+.+..-.  |           ....-|+..++.++..++..
T Consensus       147 ~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~  226 (488)
T KOG2325|consen  147 FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL  226 (488)
T ss_pred             HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence            3455569999999999999999998877777777777766654321  1           11245677777788888888


Q ss_pred             hhcccC
Q psy5073          91 TRVPET   96 (115)
Q Consensus        91 ~~~pet   96 (115)
                      ++.+|.
T Consensus       227 ~~f~E~  232 (488)
T KOG2325|consen  227 FFFKEV  232 (488)
T ss_pred             hheeec
Confidence            888874

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=91.51  E-value=1.4  Score=31.53  Aligned_cols=59  Identities=15%  Similarity=0.044  Sum_probs=43.0

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------chhHHHHHH
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV------GSAATYGLL   78 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~   78 (115)
                      ++...+.|..+....+..+++.+..+.++.+..  +++.+.|.+.+.+.+..      +.+..|.+-
T Consensus       333 lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~  397 (410)
T TIGR00885       333 AFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP  397 (410)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence            444445588888889999988876677666654  88999999999999853      344555543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=91.48  E-value=2.9  Score=30.45  Aligned_cols=38  Identities=13%  Similarity=-0.010  Sum_probs=34.8

Q ss_pred             hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073          30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID   67 (115)
Q Consensus        30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (115)
                      +++.+.|++..+.-+.+....+.+++.++|.++.+++.
T Consensus       128 ~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         128 YVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999988877

>PRK09848 glucuronide transporter; Provisional

Probab=91.47  E-value=4  Score=29.38  Aligned_cols=23  Identities=0%  Similarity=-0.182  Sum_probs=13.3

Q ss_pred             hhhhcccC-ChhhHHHHHHHHHHH
Q psy5073          28 WFMMAEII-PLEAKLWSSSLLMCY   50 (115)
Q Consensus        28 ~~~~~E~f-p~~~R~~~~~~~~~~   50 (115)
                      .+...|+. ++++|.+..++-...
T Consensus       131 ~al~~~~~~~~~~r~~~~~~r~~~  154 (448)
T PRK09848        131 GSLATAMTQQPQSRARLGAARGIA  154 (448)
T ss_pred             hhhhhhhcCCHHHHHHHHHHHHHH
Confidence            34456666 457788766554433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=89.48  E-value=7.1  Score=29.02  Aligned_cols=52  Identities=13%  Similarity=0.108  Sum_probs=33.5

Q ss_pred             HHhhcccchhhhhhcccCC-----hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Q psy5073          18 IFRIGIGPIPWFMMAEIIP-----LEAKLWSSSLLMC--YSWSCLFLVSKVFMDLIDTV   69 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp-----~~~R~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   69 (115)
                      ......++.+|++++|.-.     +..|..|...+.+  ..-++..++..+.+++....
T Consensus       339 ~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         339 VGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             HHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3344567999999999864     4556666555533  33566777777777766543

>TIGR00901 2A0125 AmpG-related permease

Probab=89.10  E-value=0.6  Score=32.30  Aligned_cols=29  Identities=10%  Similarity=-0.118  Sum_probs=23.8

Q ss_pred             ccchhhhhhcccCChhhHHHHHHHHHHHH
Q psy5073          23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYS   51 (115)
Q Consensus        23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~   51 (115)
                      ..+....+..|.+|+|.|++.+|+.....
T Consensus       326 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       326 GTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            45566678999999999999999986654

>KOG0252|consensus

Probab=88.48  E-value=1.6  Score=32.52  Aligned_cols=91  Identities=16%  Similarity=0.208  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHhhccc---chhhhhhcccCChhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh------------
Q psy5073           7 IPIFSVCTIVAIFRIGIG---PIPWFMMAEIIPLEAKLWSSSLLMCYS---WSCLFLVSKVFMDLIDT------------   68 (115)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~---~~~~~~~~E~fp~~~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------------   68 (115)
                      ..++.++++.+..+.|.|   |+..+..+|.-..+.|+.-.+..-+..   .+.+++.+.+.......            
T Consensus       142 ~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld  221 (538)
T KOG0252|consen  142 GVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLD  221 (538)
T ss_pred             chhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHH
Confidence            455566777877777775   888889999999999999887763332   34444444444444432            


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          69 VGSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      .-||..+.+-.+..+ ..+..-..+|||+.
T Consensus       222 ~vWRl~~glg~vpa~-~~ly~Rl~M~Et~~  250 (538)
T KOG0252|consen  222 GVWRIIFGLGAVPAL-LVLYFRLKMPETAR  250 (538)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhhhcCCcchh
Confidence            125544444433333 22444467899854

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=88.16  E-value=6.3  Score=26.86  Aligned_cols=48  Identities=8%  Similarity=0.015  Sum_probs=37.6

Q ss_pred             cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy5073          24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS   71 (115)
Q Consensus        24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (115)
                      +....+.+..-+|++.|.++.=+.-....+.-.+......++.+...|
T Consensus        34 N~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~   81 (254)
T COG0861          34 NAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQP   81 (254)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            455566889999999999999888777777777777777888776554

>PRK10133 L-fucose transporter; Provisional

Probab=87.55  E-value=5.2  Score=28.99  Aligned_cols=64  Identities=11%  Similarity=-0.015  Sum_probs=42.7

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHH
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLG   85 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   85 (115)
                      .....|.......|.+|.+ .+++.++... ..+++.+.|.+.+.+.+..| .+..|++..+..+..
T Consensus       361 ~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        361 MSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             HHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            3345566667777888764 5677777753 45678888899898888876 666676554443333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=87.22  E-value=4.2  Score=29.82  Aligned_cols=42  Identities=12%  Similarity=-0.098  Sum_probs=35.1

Q ss_pred             hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073          27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT   68 (115)
Q Consensus        27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (115)
                      ......+..|++.|+.+.++......+++.+++.+.+.+.+.
T Consensus       372 ~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        372 STSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567889999999999999998889888888888887654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=86.87  E-value=4.2  Score=29.59  Aligned_cols=61  Identities=11%  Similarity=0.073  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073           8 PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT   68 (115)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (115)
                      .++.++++.+..++......+..+.|-.|+++|-.++|.....-.+|-.++..++.++-..
T Consensus       337 ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~~  397 (402)
T PF02487_consen  337 IVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEPW  397 (402)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3444556666666666667777889999999999999999888888777777777666443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PTZ00207 hypothetical protein; Provisional

Probab=86.29  E-value=6.9  Score=29.95  Aligned_cols=76  Identities=5%  Similarity=-0.073  Sum_probs=50.3

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-------------chhHHHHHHHHHHHHHHH
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV-SKVFMDLIDTV-------------GSAATYGLLGVICTLGAV   87 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~   87 (115)
                      ..++.....++|+|- +.=++=.-+......++..+. -.+.+.+.+..             ..+..|.+.+.++++..+
T Consensus       468 ~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~  546 (591)
T PTZ00207        468 FMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFI  546 (591)
T ss_pred             HhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHH
Confidence            344566678999999 766666666666666555554 34556565432             244688999998888888


Q ss_pred             HHHhhcccCCC
Q psy5073          88 FVYTRVPETKN   98 (115)
Q Consensus        88 ~~~~~~pet~~   98 (115)
                      ......-+||.
T Consensus       547 ~s~~l~~R~r~  557 (591)
T PTZ00207        547 TSTYVHLQYRR  557 (591)
T ss_pred             HHhheeeehHH
Confidence            77666656653

>TIGR00896 CynX cyanate transporter

Probab=85.56  E-value=6  Score=27.34  Aligned_cols=42  Identities=12%  Similarity=-0.060  Sum_probs=33.0

Q ss_pred             hhhccc-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073          29 FMMAEI-IPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG   70 (115)
Q Consensus        29 ~~~~E~-fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (115)
                      ....+. .+++.++...++......++..++|.+.+++.+..|
T Consensus       308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       308 TLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444 456778888998888888888999999999988776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=85.54  E-value=2.3  Score=24.87  Aligned_cols=34  Identities=12%  Similarity=-0.083  Sum_probs=22.8

Q ss_pred             HhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073          67 DTVGSAATYGLLGVICTLGAVFVYTRVPETKNKS  100 (115)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  100 (115)
                      +..+|+.++++...++++...+.+.+.||++-++
T Consensus        55 d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~   88 (105)
T PF10183_consen   55 DWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQT   88 (105)
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence            4567877766655556666666667789987654

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].

>KOG2563|consensus

Probab=84.83  E-value=2  Score=31.76  Aligned_cols=40  Identities=10%  Similarity=-0.076  Sum_probs=34.2

Q ss_pred             hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5073          30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV   69 (115)
Q Consensus        30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (115)
                      ...-+||+++|+.+..++.+.+-++..++..+.|.++.+.
T Consensus       164 iA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  164 IAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             HHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            3566899999999999999999998888888888887654

>KOG3626|consensus

Probab=84.71  E-value=13  Score=29.38  Aligned_cols=85  Identities=9%  Similarity=-0.062  Sum_probs=51.6

Q ss_pred             HHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h---------------c-hhH
Q psy5073          13 CTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT---V---------------G-SAA   73 (115)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------~-~~~   73 (115)
                      -++.++......+....|+=|..-.+.-+.-.|+.+.+..++.+++-.++....+.   .               | |+.
T Consensus       244 q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWl  323 (735)
T KOG3626|consen  244 QLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWL  323 (735)
T ss_pred             HHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHH
Confidence            33333333334455555787888888888888888888888777777777766542   1               1 322


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          74 TYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      -|.+.+.+.++..+. +++.|.+..
T Consensus       324 GFLi~g~~~~~~a~p-~f~fPk~lp  347 (735)
T KOG3626|consen  324 GFLICGALLLFSAVP-LFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHHHH-HHhCcccCc
Confidence            355555555555444 456666543

>KOG3626|consensus

Probab=83.32  E-value=1.9  Score=33.66  Aligned_cols=51  Identities=20%  Similarity=0.210  Sum_probs=37.0

Q ss_pred             HHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q psy5073          17 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSW-SCLFLVSKVFMDLIDT   68 (115)
Q Consensus        17 ~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   68 (115)
                      +..+.+..|. ..++-+..|+++|..++|+-.+..+ ++.+-+|.+++++++.
T Consensus       598 f~~~~~~~p~-~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  598 FIGALGAVPG-MLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHHhccCcc-eEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence            3333333333 3456799999999999999988876 5555677789999875

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=82.98  E-value=8.4  Score=28.87  Aligned_cols=88  Identities=13%  Similarity=0.130  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhchhHHHHHHHHH
Q psy5073           8 PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMD------LIDTVGSAATYGLLGVI   81 (115)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~   81 (115)
                      .++...++..+--....|+.-+++..+-|++..+..++........+..+...+.+.      ..+.......|+..+..
T Consensus       396 ~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v  475 (498)
T COG3104         396 WLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVV  475 (498)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHH
Confidence            344444445455566677777889999999999999999988777777776666652      23334444577777777


Q ss_pred             HHHHHHHHHhhccc
Q psy5073          82 CTLGAVFVYTRVPE   95 (115)
Q Consensus        82 ~~~~~~~~~~~~pe   95 (115)
                      ..+.........|+
T Consensus       476 ~i~~~~~~~~~~~~  489 (498)
T COG3104         476 AIVIGILLLLLSPK  489 (498)
T ss_pred             HHHHHHHHHHhhHH
Confidence            77776665555544

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=80.96  E-value=12  Score=24.06  Aligned_cols=52  Identities=10%  Similarity=-0.090  Sum_probs=36.1

Q ss_pred             hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy5073          27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGV   80 (115)
Q Consensus        27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (115)
                      ..+.+.+..|++.|.++.-+......+.-.+......++.+..  ++...+.+.
T Consensus        17 vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~--~~i~~igG~   68 (183)
T PF03741_consen   17 VIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIF--PWILLIGGL   68 (183)
T ss_pred             HHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            3445677799999999988887777777777777777777763  234444433

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>KOG1330|consensus

Probab=80.35  E-value=3.5  Score=30.66  Aligned_cols=54  Identities=13%  Similarity=0.011  Sum_probs=37.2

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-hchh
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCL-FLVSKVFMDLIDT-VGSA   72 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~   72 (115)
                      .....+.+...+ ..|+.|++.|.++.++......+.+ +..|++.+.+.+. .+|+
T Consensus       362 ~~~~~~a~n~~i-~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  362 ISWFNWATNNPI-FLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHhcccccccce-eeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            334445555554 6899999999999999987775444 4455577777776 3443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		1e-05

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 7   IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF--MD 64
           + + S+   VA F +  GP+ W +++EI P   +  + ++ +   W   + VS  F  MD
Sbjct: 371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMD 430
Query: 65  ----LIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQA 106
               L+    +  +Y + G +  L A+F++  VPETK K+ E ++A
Sbjct: 431 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEA 476
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.8
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.78
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.56
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.54
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.54
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.53
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.42
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.4
2xut_A	524	Proton/peptide symporter family protein; transport	98.39
2xut_A	524	Proton/peptide symporter family protein; transport	98.36
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.83
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.69
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.79
2cfq_A	417	Lactose permease; transport, transport mechanism,	85.4

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.80  E-value=4.4e-19  Score=125.08  Aligned_cols=108  Identities=25%  Similarity=0.444  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hchhHHHHHHH
Q psy5073           6 WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT------VGSAATYGLLG   79 (115)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~   79 (115)
                      +..+.+..++...++.+.+++++.+.+|+||++.|++++|++...+++++++.+.++|.+.+.      .++.+.|++++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~  449 (491)
T 4gc0_A          370 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG  449 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            445566667777888889999999999999999999999999999999999999998877543      35556889999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCHHHHHHHHhcccc
Q psy5073          80 VICTLGAVFVYTRVPETKNKSFEAIQAELAMGYT  113 (115)
Q Consensus        80 ~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~  113 (115)
                      +++++..++.++++||||++++||+|+.++++++
T Consensus       450 ~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~  483 (491)
T 4gc0_A          450 CMGVLAALFMWKFVPETKGKTLEELEALWEPETK  483 (491)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred             HHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence            9999999999999999999999999988866544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.78  E-value=3.2e-08  Score=68.69  Aligned_cols=78  Identities=13%  Similarity=-0.067  Sum_probs=67.1

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      .....+....+++|.+|++.|++++++......++..++|.+.+.+.+..+ |++.|++.++..++..++..+..||++
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~  211 (451)
T 1pw4_A          133 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP  211 (451)
T ss_dssp             HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             hhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence            334556667789999999999999999999999999999999999888888 999999998888887777777888753

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.56  E-value=6.4e-08  Score=67.15  Aligned_cols=71  Identities=11%  Similarity=0.040  Sum_probs=59.8

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTR   92 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (115)
                      +..+....+..|.+|++.|+++.|+......+ +..++|.+.+.+.+..+++..|.+.+++.++..++..+.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          362 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            34455567899999999999999999999999 999999999999999999888888888777766655443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.54  E-value=3.7e-08  Score=67.15  Aligned_cols=78  Identities=18%  Similarity=0.027  Sum_probs=66.2

Q ss_pred             hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      ....+....+++|.+|++.|+++.++......++..++|.+.+.+.+..+|++.|.+.++..++..+...+..||+++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            334566677899999999999999999999999999999999999888899999998888877777666677888644

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.54  E-value=1.7e-07  Score=65.17  Aligned_cols=76  Identities=8%  Similarity=0.065  Sum_probs=62.4

Q ss_pred             hhhhhhcccCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q psy5073          26 IPWFMMAEIIPLEAKLWSSSLL-MCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSF  101 (115)
Q Consensus        26 ~~~~~~~E~fp~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  101 (115)
                      ..+.+.+|.+|++.|+++.++. .....+++.++|.+.+.+.+..+++..|.+.+++.++..++..+..||++..++
T Consensus       332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence            3456899999999999999996 666779999999999999988888778888888877777776777888766543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.53  E-value=8.5e-07  Score=62.37  Aligned_cols=74  Identities=9%  Similarity=0.026  Sum_probs=58.7

Q ss_pred             hcccchhhhhhcccCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073          21 IGIGPIPWFMMAEIIPLEA--KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP   94 (115)
Q Consensus        21 ~~~~~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   94 (115)
                      ....+....+++|.+|++.  |+++.++......++..++|.+.+.+.+..+|++.|++.++..++..+...+..|
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          123 GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            3345667788999999998  7777777888889999999999999999999999998887766665555443333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.42  E-value=2.5e-06  Score=58.97  Aligned_cols=77  Identities=13%  Similarity=0.113  Sum_probs=59.0

Q ss_pred             hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc-------------------------hhHH
Q psy5073          21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI-DTVG-------------------------SAAT   74 (115)
Q Consensus        21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------------~~~~   74 (115)
                      ....+....+++|.+|++.|++++++......++..+++.+...+. +..+                         |++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  211 (438)
T 3o7q_A          132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP  211 (438)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHH
Confidence            3445566678999999999999999999999999999999999988 4443                         8888


Q ss_pred             HHHHHHHHHHHHHHHHh-hcccCC
Q psy5073          75 YGLLGVICTLGAVFVYT-RVPETK   97 (115)
Q Consensus        75 ~~~~~~~~~~~~~~~~~-~~pet~   97 (115)
                      |.+.+....+..++..+ ..||++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~p~~~  235 (438)
T 3o7q_A          212 YMIIVAIVLLVALLIMLTKFPALQ  235 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCccc
Confidence            87777666655554433 356654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.40  E-value=5.5e-07  Score=63.37  Aligned_cols=81  Identities=10%  Similarity=0.036  Sum_probs=60.0

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK   97 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   97 (115)
                      .......+....+..|.+|++.|++++|+......++..+++.+.+.+.+. +..+.|...+...++..++.++..|+.+
T Consensus       398 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (491)
T 4aps_A          398 LGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQ  476 (491)
T ss_dssp             HHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445677788999999999999999999999999999999998877543 5557888888888877777777777765


Q ss_pred             CC
Q psy5073          98 NK   99 (115)
Q Consensus        98 ~~   99 (115)
                      ++
T Consensus       477 ~~  478 (491)
T 4aps_A          477 GL  478 (491)
T ss_dssp             --
T ss_pred             HH
Confidence            54

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.39  E-value=2.9e-06  Score=60.16  Aligned_cols=74  Identities=20%  Similarity=0.264  Sum_probs=58.4

Q ss_pred             HHhhcccchhhhhhcccCChhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh
Q psy5073          18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSL---LMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYT   91 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (115)
                      +......+....+++|.+|++.|++..+.   ......++..++|.+.+.+.+..+|++.|.+.++..++..+...+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          121 LGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            33444557777889999999999877666   788888999999999999988899999998888776665554433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.36  E-value=3.9e-07  Score=64.67  Aligned_cols=83  Identities=8%  Similarity=-0.101  Sum_probs=53.6

Q ss_pred             hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ch---------hHHHHHHHHHHHHHHHHH
Q psy5073          21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--GS---------AATYGLLGVICTLGAVFV   89 (115)
Q Consensus        21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~~~~   89 (115)
                      ....+....+..|..|++.|++++|+......+++.+++.+.+.+.+..  +|         +..|++.+.+.++..++.
T Consensus       420 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (524)
T 2xut_A          420 VLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVF  499 (524)
T ss_dssp             HHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence            3445666778999999999999999999999999999999998876532  12         223666666667666666


Q ss_pred             HhhcccCCCCCHHH
Q psy5073          90 YTRVPETKNKSFEA  103 (115)
Q Consensus        90 ~~~~pet~~~~~~~  103 (115)
                      .++.+++++++.++
T Consensus       500 ~~~~~~~~~~~~~~  513 (524)
T 2xut_A          500 ALYARSYQMQDHYR  513 (524)
T ss_dssp             C-------------
T ss_pred             HHHHHHhccchhhh
Confidence            66677776655443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.83  E-value=0.00037  Score=48.85  Aligned_cols=75  Identities=16%  Similarity=0.001  Sum_probs=50.4

Q ss_pred             hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------chhHHHHHHHHHHHHHHHHHHhh
Q psy5073          21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--------GSAATYGLLGVICTLGAVFVYTR   92 (115)
Q Consensus        21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~   92 (115)
                      .+..+....+++|..|++.|++..++.......+...++.+........        .|+..+....+. .+..++..+.
T Consensus       141 G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  219 (491)
T 4gc0_A          141 GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIP-ALLFLMLLYT  219 (491)
T ss_dssp             HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHH-HHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhh-hhhhhhhhhc
Confidence            3445667789999999999999999998887777777766666554432        244334433333 3333455578


Q ss_pred             cccC
Q psy5073          93 VPET   96 (115)
Q Consensus        93 ~pet   96 (115)
                      .||+
T Consensus       220 ~peS  223 (491)
T 4gc0_A          220 VPES  223 (491)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            8986

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.69  E-value=0.0003  Score=48.45  Aligned_cols=65  Identities=12%  Similarity=0.025  Sum_probs=50.2

Q ss_pred             HhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHH
Q psy5073          19 FRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLG   85 (115)
Q Consensus        19 ~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   85 (115)
                      ......|....+..|.+|++ |+.+.++.. .+.+++.++|.+.+.+.+..| ++..|.+.++..++.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          360 FMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33445677777889999987 999998877 667999999999999999988 877777655443333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.79  E-value=0.0015  Score=44.20  Aligned_cols=55  Identities=11%  Similarity=-0.140  Sum_probs=45.7

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGL   77 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (115)
                      ...+....+..|.+| +.|+++.|+......++..+++.+.+.+.+..++...+..
T Consensus       307 ~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          307 MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            356677788999999 8999999999999999999999999998877776544444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=85.40  E-value=0.08  Score=36.49  Aligned_cols=57  Identities=7%  Similarity=0.013  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          39 AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        39 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      .|+...|.......++..++|.+..++.+ .+|++.|++.++..++..+...+..||+
T Consensus       135 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~  191 (417)
T 2cfq_A          135 RSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA  191 (417)
T ss_dssp             HHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence            34555566655667788888988888876 5788877766555433333332233443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.95
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.68
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.54
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	93.32

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=6.9e-09  Score=68.47  Aligned_cols=95  Identities=7%  Similarity=0.029  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q psy5073           8 PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMC-YSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGA   86 (115)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (115)
                      ......+..+..+ ...+....++.|.+|++.|+++.|+... ...++..++|.+.+++.+..|++..|.+.+++.++..
T Consensus       315 ~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~  393 (417)
T d1pv7a_         315 VVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT  393 (417)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence            3333333333333 3456667789999999999999998755 4568889999999999999999999999999988888


Q ss_pred             HHHHhhcccCCCCCHHH
Q psy5073          87 VFVYTRVPETKNKSFEA  103 (115)
Q Consensus        87 ~~~~~~~pet~~~~~~~  103 (115)
                      ++..+.+++++..+.++
T Consensus       394 ~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         394 LISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHHSCCSSCTTHHH
T ss_pred             HHHHHhhcCCCccchhH
Confidence            88888888888777654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.6e-08  Score=68.08  Aligned_cols=76  Identities=11%  Similarity=0.016  Sum_probs=59.5

Q ss_pred             hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073          20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSC-LFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE   95 (115)
Q Consensus        20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   95 (115)
                      ..+..+....+..|.+|++.|+++.|+....++++ ...+|.+.+++.+..||+..+.+.....++..++..+..++
T Consensus       357 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         357 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445666778999999999999999998888775 45678889999999999888888877777766665555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=3.6e-08  Score=66.34  Aligned_cols=75  Identities=13%  Similarity=-0.066  Sum_probs=61.8

Q ss_pred             cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073          22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPET   96 (115)
Q Consensus        22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   96 (115)
                      ...+....+++|.+|++.|++++++......++..+++.+....... .+|++.+++.+.+.++..++..+..+|+
T Consensus       132 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            34456667899999999999999999999999999999888887766 4788888888888887777777777654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=93.32  E-value=0.11  Score=32.88  Aligned_cols=58  Identities=7%  Similarity=-0.003  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073          40 KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN   98 (115)
Q Consensus        40 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   98 (115)
                      |....+........+..+++.+.+.+.+. +|+..+........+...+..+..+|++.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T d1pv7a_         136 SNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPS  193 (417)
T ss_dssp             HSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred             hHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhccccc
Confidence            34455556666667777777877777655 44456666666666666666677776543