Psyllid ID: psy5076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPKTETPT
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHccccccEEEEEEcccccccEEEEEEEccEEEEEEEEEEEccccccEEEEccEEEcccccccEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEEccccccEEEEEccccEEEEEccccccccccccHHHHccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEEcccccccEEEEccEEEEEccccEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHccccccEEEEEEcccccccEEEEEEEcccEEEEEEEEEcccccccEEEEcccccccHHHHHHHHHHcccccccccccccccccEEEEcccEccccccEccEccccEEEEEEcccccEEEEEcccccEEEEEHHHEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEEcccEEEEEEEcccccEEEEEcccEcccccccEEEccccccccccccccccHcccccccccc
Coil and Loop (DISEMBL)
mtgtfdphdrnswyfgMMTRQEAQAILLSekdngaflvrdsntILGNYVLCVKENNKVSHYIINKITnteqqtcykigdktfsdlpSLLAFYKVhyldtsplikpaTKTIEKVIAKydfdgndpddlpfkkndiLIVVSKdeehwwtaqnisgevgsipvpyvqkysegMSILSLRnlhldssshhvpqqqttpvrkthlevklpafarvkqvrvpnaydktalKLEIGDIIKVTKtningqwegelngktghfpfthvefiptnetsvetngngdihnstpktetpt
Flexible Loop (DISEMBL)
mtgtfdphdrnswYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLdtsplikpaTKTIEKVIAKYDFdgndpddlpfkKNDILIVVSKDEEHWWTaqnisgevgsipVPYVQKYSEGMSILSLRNLHLDSSSHhvpqqqttpvrkTHLEVKLpafarvkqvrvpnaydktalkleigdiikVTKTNINGQWEGELNGKTGHFPFTHVEFIPTnetsvetngngdihnstpktetpt
Low Complexity Region (SEG)
MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPKTETPT
Disordered region (IsUnstruct)
***********SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH******************THLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP*************************
Disordered Region (DISOPRED)
******PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV***********************************************ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV*****************************
Disordered Region (DISEMBL)
MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLD**************RKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIH**********
Disordered Region (DISPRO)
***********SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE*************************PVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPKTETPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q9XYM0	271	Adapter molecule Crk OS=D	yes	N/A	0.906	0.963	0.601	4e-93
P87378	296	Adapter molecule crk OS=X	N/A	N/A	0.916	0.891	0.505	6e-73
P46108	304	Adapter molecule crk OS=H	yes	N/A	0.906	0.858	0.461	4e-68
Q63768	304	Adapter molecule crk OS=R	yes	N/A	0.906	0.858	0.461	4e-68
Q64010	304	Adapter molecule crk OS=M	yes	N/A	0.906	0.858	0.461	5e-68
P46109	303	Crk-like protein OS=Homo	no	N/A	0.892	0.848	0.465	7e-68
P47941	303	Crk-like protein OS=Mus m	no	N/A	0.892	0.848	0.465	1e-67
Q04929	305	Adapter molecule crk OS=G	yes	N/A	0.906	0.855	0.449	1e-67
Q5U2U2	303	Crk-like protein OS=Rattu	no	N/A	0.892	0.848	0.462	3e-67
P05433	440	P47(GAG-CRK) protein OS=A	N/A	N/A	0.569	0.372	0.445	2e-42

>sp|Q9XYM0|CRK_DROME Adapter molecule Crk OS=Drosophila melanogaster GN=Crk PE=2 SV=1

 Score =  341 bits (874), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 160/266 (60%), Positives = 209/266 (78%), Gaps = 5/266 (1%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
           TFD  DRNSWYFG M+RQ+A  +L++E++ G FLVRDSN+I G+YVLCV+E+ KVS+YII
Sbjct: 3   TFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLCVREDTKVSNYII 62

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGND 123
           NK+   + Q  Y+IGD++F +LP LL FY +HYLDT+PL +PA + +EKVI K+DF G+D
Sbjct: 63  NKVQQ-QDQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPLKRPACRRVEKVIGKFDFVGSD 121

Query: 124 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSL-RNLHLDS 182
            DDLPF++ ++L +V KDE+ WWTA+N SG++G IPVPY+Q+Y + M   ++ +N    S
Sbjct: 122 QDDLPFQRGEVLTIVRKDEDQWWTARNSSGKIGQIPVPYIQQYDDYMDEDAIDKNEPSIS 181

Query: 183 SSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ 242
            S +V +   + +++T L  KLPA+ARVKQ RVPNAYDKTALKLEIGDIIKVTKTNINGQ
Sbjct: 182 GSSNVFE---STLKRTDLNRKLPAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQ 238

Query: 243 WEGELNGKTGHFPFTHVEFIPTNETS 268
           WEGELNGK GHFPFTHVEF+   + S
Sbjct: 239 WEGELNGKNGHFPFTHVEFVDDCDLS 264

Adapter protein which interacts with C-terminal portion of mbc, homolog of human DOCK180. May play a role in cellular processes throughout development.
Drosophila melanogaster (taxid: 7227)

>sp|P87378|CRK_XENLA Adapter molecule crk OS=Xenopus laevis GN=crk PE=2 SV=1

 Score =  274 bits (700), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 147/291 (50%), Positives = 183/291 (62%), Gaps = 27/291 (9%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  DR SWY+G   RQEA  +L  ++ +G FLVRDS TI G+YVL V EN+KVSH
Sbjct: 1   MAGNFDSEDRASWYWGKQNRQEAVNLLQGQR-HGVFLVRDSTTIPGDYVLSVSENSKVSH 59

Query: 61  YIINKITNTEQ-------QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT---- 109
           YIIN +TN  Q       Q+ ++IGD+ F  LP+LL FYK+HYLDT+ LI+P +K+    
Sbjct: 60  YIINSVTNNRQSSTAGMVQSRFRIGDQEFDSLPTLLEFYKIHYLDTTTLIEPVSKSKQSG 119

Query: 110 -------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E + A +DF GND +DLPFKK DIL +  K EE WW A++  G  G IPVPY
Sbjct: 120 VIQRQEEVEYLRALFDFIGNDDEDLPFKKGDILRIREKPEEQWWNAEDSDGRRGMIPVPY 179

Query: 163 VQKY----SEGMSIL--SLRNLHLDSSSHHVPQQQTTPVRKTHLE--VKLPAFARVKQVR 214
           V+KY    S G +++  +  N H        P     P   T L      P FARV Q R
Sbjct: 180 VEKYRPPSSPGSALIGGNQENSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIFARVIQKR 239

Query: 215 VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
           VPNAYDKTAL LE+GD++KVTK N++GQWEGE NGK GHFPFTHV  +  N
Sbjct: 240 VPNAYDKTALALEVGDLVKVTKINVSGQWEGECNGKYGHFPFTHVRLLEQN 290

Required for apoptosis in Xenopus egg extracts. May mediate attachment-induced mapk8 activation, membrane ruffling and cell motility in a Rac-dependent manner. May regulate the efna5-epha3 signaling.

Xenopus laevis (taxid: 8355)

>sp|P46108|CRK_HUMAN Adapter molecule crk OS=Homo sapiens GN=CRK PE=1 SV=2

 Score =  258 bits (659), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 180/295 (61%), Gaps = 34/295 (11%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59

Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119

Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179

Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLP------AF 207
           G IPVPYV+KY    + +S         SH  P    +  P  +  +   LP       +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

The Crk-I and Crk-II forms differ in their biological activities. Crk-II has less transforming activity than Crk-I. Crk-II mediates attachment-induced MAPK8 activation, membrane ruffling and cell motility in a Rac-dependent manner. Involved in phagocytosis of apoptotic cells and cell motility via its interaction with DOCK1 and DOCK4. May regulate the EFNA5-EPHA3 signaling.

Homo sapiens (taxid: 9606)

>sp|Q63768|CRK_RAT Adapter molecule crk OS=Rattus norvegicus GN=Crk PE=1 SV=1

 Score =  258 bits (659), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 180/295 (61%), Gaps = 34/295 (11%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59

Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119

Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179

Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLP------AF 207
           G IPVPYV+KY    + +S         SH  P    +  P  +  +   LP       +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

The Crk-I and Crk-II forms differ in their biological activities. Crk-II has less transforming activity than Crk-I. Crk-II mediates attachment-induced MAPK8 activation, membrane ruffling and cell motility in a Rac-dependent manner. Involved in phagocytosis of apoptotic cells and cell motility via its interaction with DOCK1 and DOCK4. May regulate the EFNA5-EPHA3 signaling.

Rattus norvegicus (taxid: 10116)

>sp|Q64010|CRK_MOUSE Adapter molecule crk OS=Mus musculus GN=Crk PE=1 SV=1

 Score =  258 bits (658), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 179/295 (60%), Gaps = 34/295 (11%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59

Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P  
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVA 119

Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179

Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLP------AF 207
           G IPVPYV+KY    + +S         SH  P    +  P  +  +   LP       +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

The Crk-I and Crk-II forms differ in their biological activities. Crk-II has less transforming activity than Crk-I. Crk-II mediates attachment-induced MAPK8 activation, membrane ruffling and cell motility in a Rac-dependent manner. Involved in phagocytosis of apoptotic cells and cell motility via its interaction with DOCK1 and DOCK4. May regulate the EFNA5-EPHA3 signaling.

Mus musculus (taxid: 10090)

>sp|P46109|CRKL_HUMAN Crk-like protein OS=Homo sapiens GN=CRKL PE=1 SV=1

 Score =  257 bits (656), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)

Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61

Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117

Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK +IL+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177

Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQN 235

Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295

Query: 263 PTN 265
           P N
Sbjct: 296 PQN 298

May mediate the transduction of intracellular signals.

Homo sapiens (taxid: 9606)

>sp|P47941|CRKL_MOUSE Crk-like protein OS=Mus musculus GN=Crkl PE=1 SV=2

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)

Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G +TRQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVTRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61

Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPVGSVSAPN 117

Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK ++L+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEENLEYVRTLYDFPGNDAEDLPFKKGELLVIIEKPEEQWWSARNKDGRVGMIPVPY 177

Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPTVASTPGAAINPLPSTQN 235

Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295

Query: 263 PTN 265
           P N
Sbjct: 296 PQN 298

May mediate the transduction of intracellular signals.

Mus musculus (taxid: 10090)

>sp|Q04929|CRK_CHICK Adapter molecule crk OS=Gallus gallus GN=CRK PE=1 SV=1

 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/296 (44%), Positives = 183/296 (61%), Gaps = 35/296 (11%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  DR SWY+G ++R +A ++L  ++ +G FLVRDS +I G++VL V E+++VSH
Sbjct: 1   MAGQFDSEDRGSWYWGRLSRGDAVSLLQGQR-HGTFLVRDSGSIPGDFVLSVSESSRVSH 59

Query: 61  YIINKITNTEQQ--------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPA 106
           YI+N +     +              T ++IGD+ F  LPSLL FYK+HYLDT+ LI+P 
Sbjct: 60  YIVNSLGPAGGRRAGGEGPGAPGLNPTRFRIGDQEFDSLPSLLEFYKIHYLDTTTLIEPV 119

Query: 107 TKT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
           +++            +E V A +DF+GND +DLPFKK DIL +  K EE WW A+++ G+
Sbjct: 120 SRSRQNSGVILRQEEVEYVRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGK 179

Query: 155 VGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLPA------ 206
            G IPVPYV+K     + +S        SSH  P    +  P  +  +   LP       
Sbjct: 180 RGMIPVPYVEKCRPSSASVSTLTGGNQDSSHPQPLGGPEPGPYAQPSINTPLPNLQNGPF 239

Query: 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 240 YARVIQKRVPNAYDKTALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 295

May mediate attachment-induced MAPK8 activation, membrane ruffling and cell motility in a Rac-dependent manner. May regulate the EFNA5-EPHA3 signaling.

Gallus gallus (taxid: 9031)

>sp|Q5U2U2|CRKL_RAT Crk-like protein OS=Rattus norvegicus GN=Crkl PE=1 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 140/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)

Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61

Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPNPPMGSVSAPN 117

Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK ++L+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LSTAEENLEYVRTLYDFPGNDAEDLPFKKGELLVIIEKPEEQWWSARNKDGRVGMIPVPY 177

Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPTVASTPGAAINPLPSTQN 235

Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295

Query: 263 PTN 265
           P N
Sbjct: 296 PQN 298

May mediate the transduction of intracellular signals.

Rattus norvegicus (taxid: 10116)

>sp|P05433|GAGC_AVISC P47(GAG-CRK) protein OS=Avian sarcoma virus (strain CT10) PE=4 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 27/191 (14%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  DR SWY+G ++R +A ++L  ++ +G FLVRDS +I G++VL V E+++VSH
Sbjct: 236 MAGQFDSEDRGSWYWGRLSRGDAVSLLQGQR-HGTFLVRDSGSIPGDFVLSVSESSRVSH 294

Query: 61  YIINKITNTEQQ--------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPA 106
           YI+N +     +              T + IGD+ F  LPSLL FYK+HYLDT+ LI+P 
Sbjct: 295 YIVNSLGPAGGRRAGGEGPGAPGLNPTRFLIGDQVFDSLPSLLEFYKIHYLDTTTLIEPV 354

Query: 107 TKT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
           +++            +E V A +DF GND  DLPFKK DIL +  K EE WW A+++ G+
Sbjct: 355 SRSRQNSGVILRQEEVEYVRALFDFKGNDDGDLPFKKGDILKIRDKPEEQWWNAEDMDGK 414

Query: 155 VGSIPVPYVQK 165
            G IPVPYV+K
Sbjct: 415 RGMIPVPYVEK 425

Galliformes (taxid: 8976)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
91076140	268	PREDICTED: similar to Adapter molecule C	0.906	0.973	0.642	1e-97
242013819	263	Adapter molecule Crk, putative [Pediculu	0.899	0.984	0.657	1e-97
328714409	267	PREDICTED: adapter molecule Crk-like iso	0.871	0.940	0.661	1e-96
307177324	287	Adapter molecule Crk [Camponotus florida	0.923	0.926	0.611	1e-95
332024999	287	Adapter molecule Crk [Acromyrmex echinat	0.920	0.923	0.602	5e-95
307194538	290	Adapter molecule Crk [Harpegnathos salta	0.923	0.917	0.601	1e-94
322786985	287	hypothetical protein SINV_05509 [Solenop	0.923	0.926	0.600	2e-94
194913661	269	GG16379 [Drosophila erecta] gi|190647961	0.902	0.966	0.6	1e-92
156547828	298	PREDICTED: adapter molecule Crk-like [Na	0.906	0.875	0.574	2e-92
195450666	280	GK13611 [Drosophila willistoni] gi|19416	0.875	0.9	0.611	1e-91

>gi|91076140|ref|XP_970221.1| PREDICTED: similar to Adapter molecule Crk [Tribolium castaneum] gi|270014714|gb|EFA11162.1| hypothetical protein TcasGA2_TC004767 [Tribolium castaneum]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 169/263 (64%), Positives = 213/263 (80%), Gaps = 2/263 (0%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M  TFD  D++SWYFG ++R+EA  +L++E+  G FLVRDS T +G++VLCVKE++KVSH
Sbjct: 1   MASTFDHEDKDSWYFGPISRKEATDLLMAERGGGVFLVRDSATCVGDFVLCVKEDSKVSH 60

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 120
           YIINK+  + QQ  Y+IGD+ F+DLPSLL+FYK+HYLDT+PLI+PA+K +EKVIAK+DF+
Sbjct: 61  YIINKMQES-QQIKYRIGDQIFADLPSLLSFYKLHYLDTTPLIRPASKKVEKVIAKFDFE 119

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSL-RNLH 179
           G DPDDL F+K +IL +V+KDEE WWTA N +G+ GSIPVPYVQKY EG +   + R   
Sbjct: 120 GQDPDDLVFRKGEILTIVAKDEEQWWTAVNSAGQRGSIPVPYVQKYEEGQAPTEIPRPGS 179

Query: 180 LDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI 239
             S +    QQ  T ++++ ++ KLPA ARVKQVRVPNAYDKTALKLEIGDII VTKTNI
Sbjct: 180 GGSVTSSTQQQAETAMKRSQMQRKLPAKARVKQVRVPNAYDKTALKLEIGDIITVTKTNI 239

Query: 240 NGQWEGELNGKTGHFPFTHVEFI 262
           NGQWEGELNGKTG+FPFTHVEF+
Sbjct: 240 NGQWEGELNGKTGYFPFTHVEFL 262

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013819|ref|XP_002427598.1| Adapter molecule Crk, putative [Pediculus humanus corporis] gi|212512013|gb|EEB14860.1| Adapter molecule Crk, putative [Pediculus humanus corporis]

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/263 (65%), Positives = 209/263 (79%), Gaps = 4/263 (1%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M  TFDP DR SWYFG M+RQ+A  +L+SEK+ G FL+RDS +I G+YVLCV+E++KVSH
Sbjct: 1   MASTFDPFDRTSWYFGQMSRQDATDLLMSEKEGGVFLIRDSISISGDYVLCVREDSKVSH 60

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 120
           YIINKI   EQ T Y+IGD+ F DLPSLL FYK+HYLDT+PLIKPA K +EKVIAKYDFD
Sbjct: 61  YIINKIQQGEQ-TIYRIGDQKFPDLPSLLTFYKLHYLDTTPLIKPAPKRVEKVIAKYDFD 119

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 180
           GNDPDDLPFKK ++L++VSKDE+ WWTA+N  G+ GSIPVPY+Q+Y E    ++  + H 
Sbjct: 120 GNDPDDLPFKKGEVLLIVSKDEDQWWTARNSLGKTGSIPVPYIQRYEENQPYIT--DGHR 177

Query: 181 DSS-SHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI 239
            SS S ++    + P +K +++ KLPA ARVKQ RVPNAYDKTALKLEIGD I VTK NI
Sbjct: 178 PSSGSGNLVAVPSEPSKKANIQRKLPALARVKQARVPNAYDKTALKLEIGDTITVTKMNI 237

Query: 240 NGQWEGELNGKTGHFPFTHVEFI 262
           NGQWEGELNGK GHFPFTH+  I
Sbjct: 238 NGQWEGELNGKYGHFPFTHLCLI 260

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714409|ref|XP_001943269.2| PREDICTED: adapter molecule Crk-like isoform 1 [Acyrthosiphon pisum] gi|328714411|ref|XP_003245351.1| PREDICTED: adapter molecule Crk-like isoform 2 [Acyrthosiphon pisum]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 172/260 (66%), Positives = 212/260 (81%), Gaps = 9/260 (3%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
            FDP+++ SWYFG M+R EA  +L+ E++ G FL+RDS +I G+YVLCV+E++KVSHYII
Sbjct: 5   CFDPNNKASWYFGQMSRIEASDLLMGERECGTFLIRDSLSIQGDYVLCVREDSKVSHYII 64

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGND 123
           NKI     +T Y+IGD+ F+DLPSLLAFYK+HYLDT+PL+KPA K IEKV+AKYDF GND
Sbjct: 65  NKI-QEHNETKYRIGDQMFADLPSLLAFYKLHYLDTTPLLKPAVKPIEKVVAKYDFVGND 123

Query: 124 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSS 183
            DDLPF+K DIL ++ KDEE WWTA+NI G++GSIPVPYVQKY +G   L +++      
Sbjct: 124 QDDLPFRKGDILTILVKDEEQWWTAKNIMGQMGSIPVPYVQKY-DGNPPLPIKD------ 176

Query: 184 SHHVP-QQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ 242
           S+ +P     + +R++ L+ KLPA ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ
Sbjct: 177 SNQIPGSNNESTLRRSSLQKKLPALARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ 236

Query: 243 WEGELNGKTGHFPFTHVEFI 262
           WEGELNGKTGHFPFTHVEF+
Sbjct: 237 WEGELNGKTGHFPFTHVEFV 256

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177324|gb|EFN66497.1| Adapter molecule Crk [Camponotus floridanus]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 173/283 (61%), Positives = 214/283 (75%), Gaps = 17/283 (6%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M  TFD +D++SWYFG M+RQ+A  +L+ EK+ G FLVRDS +I G++VLCV+E++KVSH
Sbjct: 1   MAATFDQYDKSSWYFGAMSRQDASDLLMGEKEGGVFLVRDSTSIHGDFVLCVREDSKVSH 60

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 120
           YIINKI   +Q   Y+IGD+ F D+PSLLAFYK+HYLDT+PLI+PA K  ++VIAKYDFD
Sbjct: 61  YIINKIQQGDQ-IRYRIGDQMFPDIPSLLAFYKLHYLDTTPLIRPAPKKTQRVIAKYDFD 119

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 180
           GND DDLPF+K DIL V+SKDEE WWTA+N  G+ GSIPVPYVQKY E   ++   N   
Sbjct: 120 GNDSDDLPFRKGDILTVISKDEEQWWTARNSVGQTGSIPVPYVQKYDEDNHMIIENNSRP 179

Query: 181 DSS-----------SHHVPQQ----QTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALK 225
           +S            +  V Q     Q T  R+++++  LPAFA+VKQ RVPNAYDKTALK
Sbjct: 180 ESGGSSGSNSNSGPTTQVSQAEITGQATVTRRSNIQRTLPAFAKVKQARVPNAYDKTALK 239

Query: 226 LEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           LE+GD+IKVTKTNINGQWEGEL+GK GHFPFTHVEF+  NET 
Sbjct: 240 LEVGDMIKVTKTNINGQWEGELHGKVGHFPFTHVEFV-DNETG 281

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024999|gb|EGI65186.1| Adapter molecule Crk [Acromyrmex echinatior]

 Score =  353 bits (906), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 170/282 (60%), Positives = 213/282 (75%), Gaps = 17/282 (6%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M  TFD +D++SWYFG M+RQ+A  +L+ EK+ G FLVRDS +I G++VLCV+E++KVSH
Sbjct: 1   MAATFDQYDKSSWYFGAMSRQDASDLLMGEKEGGVFLVRDSTSIHGDFVLCVREDSKVSH 60

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 120
           YIINKI   +Q   Y+IGD+ F D+PSLLAFYK+HYLDT+PLI+PA K  ++VIAKYDF+
Sbjct: 61  YIINKIQQGDQ-IRYRIGDQMFPDIPSLLAFYKLHYLDTTPLIRPAPKKTQRVIAKYDFE 119

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 180
           GND +DLPF+K DIL V+SKDEE WWTA+N  G+ GSIPVPYVQKY +   ++   N   
Sbjct: 120 GNDSEDLPFRKGDILTVISKDEEQWWTARNSVGQTGSIPVPYVQKYDDDSHMIIENNSRP 179

Query: 181 DSS---------------SHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALK 225
           +S                SH     Q T  R+++++  LPAFA+VKQ RVPNAYDKTALK
Sbjct: 180 ESGGSSGSNSNSGPTSQVSHTETTGQATVTRRSNIQRTLPAFAKVKQARVPNAYDKTALK 239

Query: 226 LEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
           LE+GD+IKVTKTNINGQWEGEL+GK GHFPFTHVEF+  NET
Sbjct: 240 LEVGDMIKVTKTNINGQWEGELHGKVGHFPFTHVEFV-DNET 280

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194538|gb|EFN76830.1| Adapter molecule Crk [Harpegnathos saltator]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 172/286 (60%), Positives = 217/286 (75%), Gaps = 20/286 (6%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M  TFD +D++SWYFG M+RQ+A  +L+ EK+ G FLVRDS +I G++VLCV+E++KVSH
Sbjct: 1   MAATFDQYDKSSWYFGAMSRQDASDLLMGEKEGGVFLVRDSTSIHGDFVLCVREDSKVSH 60

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 120
           YIINKI   +Q   Y+IGD+ F D+PSLLAFYK+HYLDT+PLI+PA K  +++IAKYDF+
Sbjct: 61  YIINKIQQGDQ-VRYRIGDQMFPDIPSLLAFYKLHYLDTTPLIRPALKKTQRIIAKYDFE 119

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 180
           GNDPDDLPF+K +IL VVSKDEE WWTA+N  G++GS+PVPYVQKY E   ++   N   
Sbjct: 120 GNDPDDLPFRKGEILTVVSKDEEQWWTARNSLGQIGSVPVPYVQKYDEDNHMIIENNSRP 179

Query: 181 D-----------SSSHHVPQQ-------QTTPVRKTHLEVKLPAFARVKQVRVPNAYDKT 222
           +            S+  VP +        TT  R+++++  LPAFA+VKQ RVPNAYDKT
Sbjct: 180 ESGGSSGSNSNSGSATQVPHETTAGQATTTTVTRRSNIQRTLPAFAKVKQARVPNAYDKT 239

Query: 223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           ALKLE+GDIIKVTKTNINGQWEGEL+GK GHFPFTHVEF+  NET 
Sbjct: 240 ALKLEVGDIIKVTKTNINGQWEGELHGKVGHFPFTHVEFV-DNETG 284

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786985|gb|EFZ13209.1| hypothetical protein SINV_05509 [Solenopsis invicta]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/283 (60%), Positives = 212/283 (74%), Gaps = 17/283 (6%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M  TFD +D++SWYFG M+RQ+A  +L+ EK+ G FLVRDS +I G++VLCV+E++KVSH
Sbjct: 1   MAATFDQYDKSSWYFGAMSRQDASDLLMGEKEGGVFLVRDSTSIHGDFVLCVREDSKVSH 60

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 120
           YIINKI   +Q   Y+IGD+ F D+PSLLAFYK+HYLDT+PLI+PA K  ++VIAKYDF+
Sbjct: 61  YIINKIQQGDQ-IRYRIGDQMFPDIPSLLAFYKLHYLDTTPLIRPAPKKTQRVIAKYDFE 119

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 180
           GND +DLPF+K DIL V+SKDEE WWTA+N  G+ GSIPVPYVQKY +   ++   N   
Sbjct: 120 GNDSEDLPFRKGDILTVISKDEEQWWTARNSVGQTGSIPVPYVQKYDDDNHMIIENNSRP 179

Query: 181 DSS---------------SHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALK 225
           +S                SH     Q T  R+ +++  LPAFA+VKQ RVPNAYDKTALK
Sbjct: 180 ESGGSSGSNSNSGPTSQVSHTESTGQATVTRRPNIQRTLPAFAKVKQARVPNAYDKTALK 239

Query: 226 LEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           LE+GD+IKVTKTNINGQWEGEL+GK GHFPFTHVEF+  NET 
Sbjct: 240 LEVGDMIKVTKTNINGQWEGELHGKVGHFPFTHVEFV-DNETG 281

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194913661|ref|XP_001982745.1| GG16379 [Drosophila erecta] gi|190647961|gb|EDV45264.1| GG16379 [Drosophila erecta]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 159/265 (60%), Positives = 206/265 (77%), Gaps = 5/265 (1%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
           TFD  DRNSWYFG M+RQ+A  +L++E++ G FLVRDSN+I G+YVLCV+E+ KVS+YII
Sbjct: 3   TFDVSDRNSWYFGSMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLCVREDTKVSNYII 62

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGND 123
           NK+   + QT Y+IGD++F +LP LL FY +HYLDT+PL +PA K +EKV+ K+DF G+D
Sbjct: 63  NKVQQ-QDQTVYRIGDQSFENLPKLLTFYTLHYLDTTPLKRPACKRVEKVMGKFDFVGSD 121

Query: 124 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSS 183
            DDLPF++ ++L +V KDE+ WWTA+N SG++G IPVPY+Q+Y + M   ++       S
Sbjct: 122 QDDLPFQRGEVLTIVRKDEDQWWTARNSSGKIGQIPVPYIQQYDDYMDENAIDKSEPSGS 181

Query: 184 SHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQW 243
           S+       + +++T L  KLPA+ARVKQ RVPNAYDKTALKLEIGDIIKVTKTNINGQW
Sbjct: 182 SNMF----GSTLKRTDLNRKLPAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQW 237

Query: 244 EGELNGKTGHFPFTHVEFIPTNETS 268
           EGELNGK GHFPFTHVEF+   + S
Sbjct: 238 EGELNGKNGHFPFTHVEFVDNCDLS 262

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547828|ref|XP_001600055.1| PREDICTED: adapter molecule Crk-like [Nasonia vitripennis]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 162/282 (57%), Positives = 207/282 (73%), Gaps = 21/282 (7%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M GTFD +D++SWYFG M+RQ+A  +L+SEK+ G FLVRDS +I G++VLCV+E++KVSH
Sbjct: 1   MAGTFDQNDKSSWYFGAMSRQDASDLLMSEKEGGVFLVRDSISIQGDFVLCVREDSKVSH 60

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 120
           YIINKI   +Q   Y+IGD+ F D+P+LLAFYK+HYLDT+PLI+PA + I++VIA+YDFD
Sbjct: 61  YIINKIQQGDQ-IRYRIGDQIFPDIPNLLAFYKLHYLDTTPLIRPAPRKIQRVIARYDFD 119

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS------------- 167
           GNDPDDLPF+K +IL ++SKDEE WWTA+N  G+ GS+PVPYVQKY              
Sbjct: 120 GNDPDDLPFRKGEILTIISKDEEQWWTAKNSLGQTGSVPVPYVQKYQDDDHQHIIDGSTP 179

Query: 168 -------EGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYD 220
                  E             + +           R+++++  LPA+A+VKQ RVPNAYD
Sbjct: 180 AAAAARPESGGSSGSGTTSHTTETVQQQATAAAATRRSNIQRTLPAYAKVKQARVPNAYD 239

Query: 221 KTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           KTALKLE+GDIIKVTKTNINGQWEGEL+GK GHFPFTHVEF+
Sbjct: 240 KTALKLEVGDIIKVTKTNINGQWEGELHGKVGHFPFTHVEFV 281

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195450666|ref|XP_002072580.1| GK13611 [Drosophila willistoni] gi|194168665|gb|EDW83566.1| GK13611 [Drosophila willistoni]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 159/260 (61%), Positives = 203/260 (78%), Gaps = 8/260 (3%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
           TFD  DR+SWYFG M+RQ+A  +L++E++ G FLVRDSN+I+G+YVLCV+E+ KVS+YII
Sbjct: 3   TFDVSDRSSWYFGSMSRQDATEVLMNERERGVFLVRDSNSIVGDYVLCVREDTKVSNYII 62

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGND 123
           NK+   + Q  Y+IGD++F +LP LL FY +HYLDT+PL +PA K +EKVI K+DF G+D
Sbjct: 63  NKVQQ-QDQIVYRIGDQSFENLPRLLTFYTLHYLDTTPLRRPAQKKVEKVIGKFDFVGSD 121

Query: 124 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSS 183
            DDLPF++ ++L V+ KDE+ WWTA+N SG+VG IPVPYVQ+Y + +      N  +   
Sbjct: 122 QDDLPFQRGEVLTVIRKDEDQWWTARNSSGQVGQIPVPYVQRYEDTIEEDGFDNGPM--- 178

Query: 184 SHHVPQQQTTP-VRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ 242
              VP   TT  +++T L  KLPA+ARVKQ RVPNAYDKTALKLEIGDIIKVTKTNINGQ
Sbjct: 179 ---VPSSSTTSTLKRTDLNRKLPAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQ 235

Query: 243 WEGELNGKTGHFPFTHVEFI 262
           WEGEL G+ GHFPFTHVEF+
Sbjct: 236 WEGELKGRKGHFPFTHVEFV 255

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
FB|FBgn0024811	271	Crk "Crk" [Drosophila melanoga	0.885	0.940	0.611	6.9e-86
UNIPROTKB|P87378	296	crk "Adapter molecule crk" [Xe	0.541	0.527	0.512	6.8e-69
ZFIN|ZDB-GENE-040801-148	311	crk "v-crk sarcoma virus CT10	0.520	0.482	0.511	2.9e-68
UNIPROTKB|E1BQ32	304	CRK "Uncharacterized protein"	0.527	0.5	0.5	4.2e-63
UNIPROTKB|E2QWD3	385	CRK "Uncharacterized protein"	0.527	0.394	0.5	4.2e-63
UNIPROTKB|P46108	304	CRK "Adapter molecule crk" [Ho	0.527	0.5	0.5	4.2e-63
RGD|2405	304	Crk "v-crk sarcoma virus CT10	0.527	0.5	0.5	4.2e-63
MGI|MGI:88508	304	Crk "v-crk sarcoma virus CT10	0.527	0.5	0.5	5.4e-63
UNIPROTKB|F1P241	280	CRKL "Uncharacterized protein"	0.579	0.596	0.483	2e-59
UNIPROTKB|G3N016	308	G3N016 "Uncharacterized protei	0.597	0.558	0.476	9.9e-54

FB|FBgn0024811 Crk "Crk" [Drosophila melanogaster (taxid:7227)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 159/260 (61%), Positives = 207/260 (79%)

Query:     4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
             TFD  DRNSWYFG M+RQ+A  +L++E++ G FLVRDSN+I G+YVLCV+E+ KVS+YII
Sbjct:     3 TFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLCVREDTKVSNYII 62

Query:    64 NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGND 123
             NK+   + Q  Y+IGD++F +LP LL FY +HYLDT+PL +PA + +EKVI K+DF G+D
Sbjct:    63 NKVQQ-QDQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPLKRPACRRVEKVIGKFDFVGSD 121

Query:   124 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSL-RNLHLDS 182
              DDLPF++ ++L +V KDE+ WWTA+N SG++G IPVPY+Q+Y + M   ++ +N    S
Sbjct:   122 QDDLPFQRGEVLTIVRKDEDQWWTARNSSGKIGQIPVPYIQQYDDYMDEDAIDKNEPSIS 181

Query:   183 SSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ 242
              S +V +   + +++T L  KLPA+ARVKQ RVPNAYDKTALKLEIGDIIKVTKTNINGQ
Sbjct:   182 GSSNVFE---STLKRTDLNRKLPAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQ 238

Query:   243 WEGELNGKTGHFPFTHVEFI 262
             WEGELNGK GHFPFTHVEF+
Sbjct:   239 WEGELNGKNGHFPFTHVEFV 258

GO:0005070 "SH3/SH2 adaptor activity" evidence=ISS;IDA;NAS

GO:0007165 "signal transduction" evidence=NAS

GO:0007520 "myoblast fusion" evidence=TAS

GO:0046529 "imaginal disc fusion, thorax closure" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0046330 "positive regulation of JNK cascade" evidence=IDA

GO:0007298 "border follicle cell migration" evidence=IMP

UNIPROTKB|P87378 crk "Adapter molecule crk" [Xenopus laevis (taxid:8355)]

 Score = 402 (146.6 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
 Identities = 84/164 (51%), Positives = 102/164 (62%)

Query:   110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY--- 166
             +E + A +DF GND +DLPFKK DIL +  K EE WW A++  G  G IPVPYV+KY   
Sbjct:   127 VEYLRALFDFIGNDDEDLPFKKGDILRIREKPEEQWWNAEDSDGRRGMIPVPYVEKYRPP 186

Query:   167 -SEGMSIL--SLRNLHLDSSSHHVPQQQTTPVRKTHLE--VKLPAFARVKQVRVPNAYDK 221
              S G +++  +  N H        P     P   T L      P FARV Q RVPNAYDK
Sbjct:   187 SSPGSALIGGNQENSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIFARVIQKRVPNAYDK 246

Query:   222 TALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
             TAL LE+GD++KVTK N++GQWEGE NGK GHFPFTHV  +  N
Sbjct:   247 TALALEVGDLVKVTKINVSGQWEGECNGKYGHFPFTHVRLLEQN 290

GO:0032319 "regulation of Rho GTPase activity" evidence=ISS

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISS

GO:0048013 "ephrin receptor signaling pathway" evidence=ISS

ZFIN|ZDB-GENE-040801-148 crk "v-crk sarcoma virus CT10 oncogene homolog (avian)" [Danio rerio (taxid:7955)]

 Score = 407 (148.3 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
 Identities = 86/168 (51%), Positives = 104/168 (61%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY---- 166
             E V A +DF GND +DLPF+K D+L V+ K EE WW AQN  G VG IPVPYV+KY    
Sbjct:   136 EYVRALFDFPGNDDEDLPFRKGDVLRVLEKPEEQWWNAQNSEGRVGMIPVPYVEKYRPAS 195

Query:   167 ----SEGMSILSLRNLHLDSSSHHV--------PQQQTTPVRKTHLEVKLPAFARVKQVR 214
                 + G+S+ S    H +S  H          P Q   P    +L+   P +AR  Q R
Sbjct:   196 PTSGAPGVSV-SGSGAHGNSDGHSTQSPPLLGEPGQYAQPTSLPNLQ-NGPVYARAIQKR 253

Query:   215 VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             VPNAYDKTAL LE+GD++KVTK N+NGQWEGE  GK GHFPFTHV  +
Sbjct:   254 VPNAYDKTALALEVGDMVKVTKINVNGQWEGECKGKHGHFPFTHVRLL 301

GO:0005575 "cellular_component" evidence=ND

GO:0007520 "myoblast fusion" evidence=IMP

UNIPROTKB|E1BQ32 CRK "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 393 (143.4 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 80/160 (50%), Positives = 101/160 (63%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct:   135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 194

Query:   171 SILSLRNLHLDSSSHHVPQ--QQTTPVRKTHLEVKLP------AFARVKQVRVPNAYDKT 222
             + +S         SH  P    +  P  +  +   LP       +ARV Q RVPNAYDKT
Sbjct:   195 ASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKT 254

Query:   223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             AL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct:   255 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0045309 "protein phosphorylated amino acid binding" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032319 "regulation of Rho GTPase activity" evidence=IEA

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA

UNIPROTKB|E2QWD3 CRK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 393 (143.4 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 80/160 (50%), Positives = 101/160 (63%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct:   216 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 275

Query:   171 SILSLRNLHLDSSSHHVPQ--QQTTPVRKTHLEVKLP------AFARVKQVRVPNAYDKT 222
             + +S         SH  P    +  P  +  +   LP       +ARV Q RVPNAYDKT
Sbjct:   276 ASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKT 335

Query:   223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             AL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct:   336 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 375

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0045309 "protein phosphorylated amino acid binding" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032319 "regulation of Rho GTPase activity" evidence=IEA

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA

UNIPROTKB|P46108 CRK "Adapter molecule crk" [Homo sapiens (taxid:9606)]

 Score = 393 (143.4 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 80/160 (50%), Positives = 101/160 (63%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct:   135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 194

Query:   171 SILSLRNLHLDSSSHHVPQ--QQTTPVRKTHLEVKLP------AFARVKQVRVPNAYDKT 222
             + +S         SH  P    +  P  +  +   LP       +ARV Q RVPNAYDKT
Sbjct:   195 ASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKT 254

Query:   223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             AL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct:   255 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0045309 "protein phosphorylated amino acid binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IPI

GO:0046875 "ephrin receptor binding" evidence=IPI

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IDA

GO:0032319 "regulation of Rho GTPase activity" evidence=IDA

GO:0048013 "ephrin receptor signaling pathway" evidence=IDA

GO:0005737 "cytoplasm" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0000186 "activation of MAPKK activity" evidence=TAS

GO:0005768 "endosome" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

RGD|2405 Crk "v-crk sarcoma virus CT10 oncogene homolog (avian)" [Rattus norvegicus (taxid:10116)]

 Score = 393 (143.4 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 80/160 (50%), Positives = 101/160 (63%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct:   135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 194

Query:   171 SILSLRNLHLDSSSHHVPQ--QQTTPVRKTHLEVKLP------AFARVKQVRVPNAYDKT 222
             + +S         SH  P    +  P  +  +   LP       +ARV Q RVPNAYDKT
Sbjct:   195 ASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKT 254

Query:   223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             AL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct:   255 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=TAS

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030674 "protein binding, bridging" evidence=IMP

GO:0032319 "regulation of Rho GTPase activity" evidence=ISO;ISS

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO;ISS

GO:0035020 "regulation of Rac protein signal transduction" evidence=IMP

GO:0042169 "SH2 domain binding" evidence=IEA;ISO

GO:0045309 "protein phosphorylated amino acid binding" evidence=IEA;ISO

GO:0046875 "ephrin receptor binding" evidence=IEA;ISO

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO;ISS

GO:0051270 "regulation of cellular component movement" evidence=TAS

MGI|MGI:88508 Crk "v-crk sarcoma virus CT10 oncogene homolog (avian)" [Mus musculus (taxid:10090)]

 Score = 393 (143.4 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 80/160 (50%), Positives = 101/160 (63%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct:   135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 194

Query:   171 SILSLRNLHLDSSSHHVPQ--QQTTPVRKTHLEVKLP------AFARVKQVRVPNAYDKT 222
             + +S         SH  P    +  P  +  +   LP       +ARV Q RVPNAYDKT
Sbjct:   195 ASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKT 254

Query:   223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             AL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct:   255 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

GO:0005070 "SH3/SH2 adaptor activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0032319 "regulation of Rho GTPase activity" evidence=ISO

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO

GO:0035020 "regulation of Rac protein signal transduction" evidence=ISO

GO:0042169 "SH2 domain binding" evidence=ISO

GO:0045309 "protein phosphorylated amino acid binding" evidence=IDA

GO:0046875 "ephrin receptor binding" evidence=ISO;IPI

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO

UNIPROTKB|F1P241 CRKL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 395 (144.1 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
 Identities = 89/184 (48%), Positives = 115/184 (62%)

Query:    99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
             ++P +  A + +E V   YDF GND +DLPFKK +IL++V K EE WW+A+N  G +G I
Sbjct:    92 SAPAMSAAEENVEYVRTLYDFPGNDAEDLPFKKGEILVIVEKPEEQWWSARNKDGRIGMI 151

Query:   159 PVPYVQKY-SEGMSILSLRNLH---LDSSSHHVPQQQTT-P---VRKTHLEV--KLPA-- 206
             PVPYV+K     +     RN +   +   +H   Q QTT P   V  T   V   LP+  
Sbjct:   152 PVPYVEKLVRSSIGKHGNRNSNSYGIPEPAHAYAQPQTTSPLPTVSSTPGAVINPLPSTQ 211

Query:   207 ----FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-F 261
                 +A+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F
Sbjct:   212 NGPVYAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIF 271

Query:   262 IPTN 265
              P N
Sbjct:   272 DPQN 275

GO:0001568 "blood vessel development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0060017 "parathyroid gland development" evidence=IEA

UNIPROTKB|G3N016 G3N016 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 397 (144.8 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 90/189 (47%), Positives = 112/189 (59%)

Query:    99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
             ++P +  A +T+E V   YDF GND +DLPFKK +IL++V K EE WW+A+N  G VG I
Sbjct:   120 SAPSLPAAEETLEYVRTLYDFPGNDAEDLPFKKGEILVIVEKPEEQWWSARNKDGRVGMI 179

Query:   159 PVPYVQKYSEGMSILSLRNLHLDS-----SSHHVPQQQTT-P----------VRKTHLEV 202
             PVPYV+K     +     N +  S      +H   Q QTT P          V       
Sbjct:   180 PVPYVEKLVRASAQGKPGNRNSSSYGVPEPAHAYAQPQTTAPPPAAGAPGAAVSPLPSTQ 239

Query:   203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
               P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ I
Sbjct:   240 NGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKII 299

Query:   263 -PTNETSVE 270
              P N    E
Sbjct:   300 DPQNPDESE 308

GO:0060017 "parathyroid gland development" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XYM0	CRK_DROME	No assigned EC number	0.6015	0.9062	0.9630	yes	N/A
Q9NHC3	CED2_CAEEL	No assigned EC number	0.3344	0.8854	0.9139	yes	N/A
P46108	CRK_HUMAN	No assigned EC number	0.4610	0.9062	0.8585	yes	N/A
Q63768	CRK_RAT	No assigned EC number	0.4610	0.9062	0.8585	yes	N/A
P87378	CRK_XENLA	No assigned EC number	0.5051	0.9166	0.8918	N/A	N/A
Q64010	CRK_MOUSE	No assigned EC number	0.4610	0.9062	0.8585	yes	N/A
Q04929	CRK_CHICK	No assigned EC number	0.4493	0.9062	0.8557	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	288
cd09926	106	cd09926, SH2_CRK_like, Src homology 2 domain found	1e-50
cd11759	57	cd11759, SH3_CRK_C, C-terminal Src Homology 3 doma	3e-35
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	5e-29
pfam00017	77	pfam00017, SH2, SH2 domain	8e-22
smart00252	84	smart00252, SH2, Src homology 2 domains	5e-21
cd00173	79	cd00173, SH2, Src homology 2 (SH2) domain	6e-21
smart00326	56	smart00326, SH3, Src homology 3 domains	9e-20
pfam00018	47	pfam00018, SH3_1, SH3 domain	4e-17
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	1e-16
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	3e-16
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	6e-16
cd10337	136	cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in	1e-14
cd10360	79	cd10360, SH2_Srm, Src homology 2 (SH2) domain foun	7e-14
cd10347	81	cd10347, SH2_Nterm_shark_like, N-terminal Src homo	1e-13
cd09933	101	cd09933, SH2_Src_family, Src homology 2 (SH2) doma	2e-13
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	8e-13
cd09941	95	cd09941, SH2_Grb2_like, Src homology 2 domain foun	1e-12
cd09931	99	cd09931, SH2_C-SH2_SHP_like, C-terminal Src homolo	2e-12
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	3e-12
cd09943	93	cd09943, SH2_Nck_family, Src homology 2 (SH2) doma	3e-12
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	7e-12
cd09937	98	cd09937, SH2_csk_like, Src homology 2 (SH2) domain	7e-12
cd10354	77	cd10354, SH2_Cterm_RasGAP, C-terminal Src homology	3e-11
cd10370	96	cd10370, SH2_Src_Src42, Src homology 2 (SH2) domai	4e-11
cd10355	92	cd10355, SH2_DAPP1_BAM32_like, Src homology 2 doma	4e-11
cd09944	108	cd09944, SH2_Grb7_family, Src homology 2 (SH2) dom	1e-10
cd10365	101	cd10365, SH2_Src_Src, Src homology 2 (SH2) domain	2e-10
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	2e-10
cd09935	94	cd09935, SH2_ABL, Src homology 2 (SH2) domain foun	2e-10
cd10361	90	cd10361, SH2_Fps_family, Src homology 2 (SH2) doma	2e-10
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	3e-10
cd10343	103	cd10343, SH2_SHIP, Src homology 2 (SH2) domain fou	3e-10
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	8e-10
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	9e-10
cd10341	99	cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src	1e-09
cd10352	91	cd10352, SH2_a2chimerin_b2chimerin, Src homology 2	1e-09
cd11905	56	cd11905, SH3_Tec, Src Homology 3 domain of Tec (Ty	5e-09
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	6e-09
cd09932	104	cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src	6e-09
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	1e-08
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	1e-08
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	1e-08
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	1e-08
cd10369	96	cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain	2e-08
cd09940	102	cd09940, SH2_Vav_family, Src homology 2 (SH2) doma	2e-08
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	2e-08
cd09925	104	cd09925, SH2_SHC, Src homology 2 (SH2) domain foun	2e-08
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	2e-08
cd10408	97	cd10408, SH2_Nck1, Src homology 2 (SH2) domain fou	4e-08
cd09938	104	cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src	5e-08
cd09929	121	cd09929, SH2_BLNK_SLP-76, Src homology 2 (SH2) dom	5e-08
cd11968	56	cd11968, SH3_SASH3, Src homology 3 domain of Sam A	5e-08
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	6e-08
cd10417	102	cd10417, SH2_SH2D7, Src homology 2 domain found in	7e-08
cd11908	56	cd11908, SH3_ITK, Src Homology 3 domain of Interle	7e-08
cd09930	104	cd09930, SH2_cSH2_p85_like, C-terminal Src homolog	8e-08
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	9e-08
cd11765	51	cd11765, SH3_Nck_1, First Src Homology 3 domain of	9e-08
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	1e-07
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	1e-07
cd10367	101	cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain	1e-07
cd11862	61	cd11862, SH3_MPP, Src Homology 3 domain of Membran	1e-07
cd11906	55	cd11906, SH3_BTK, Src Homology 3 domain of Bruton'	1e-07
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	1e-07
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	1e-07
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	1e-07
cd09923	81	cd09923, SH2_SOCS_family, Src homology 2 (SH2) dom	2e-07
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	2e-07
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	3e-07
cd10366	101	cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain	3e-07
cd10348	86	cd10348, SH2_Cterm_shark_like, C-terminal Src homo	3e-07
cd10353	103	cd10353, SH2_Nterm_RasGAP, N-terminal Src homology	3e-07
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	4e-07
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	4e-07
cd10340	99	cd10340, SH2_N-SH2_SHP_like, N-terminal Src homolo	4e-07
cd11822	52	cd11822, SH3_SASH_like, Src homology 3 domain of S	4e-07
cd10401	99	cd10401, SH2_C-SH2_Syk_like, C-terminal Src homolo	5e-07
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	5e-07
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	6e-07
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	6e-07
cd10349	77	cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain f	6e-07
cd10409	98	cd10409, SH2_Nck2, Src homology 2 (SH2) domain fou	7e-07
cd11907	55	cd11907, SH3_TXK, Src Homology 3 domain of TXK, al	8e-07
cd10405	103	cd10405, SH2_Vav1, Src homology 2 (SH2) domain fou	9e-07
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	1e-06
cd10414	108	cd10414, SH2_Grb14, Src homology 2 (SH2) domain fo	1e-06
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	1e-06
cd11775	57	cd11775, SH3_Sla1p_3, Third Src Homology 3 domain	1e-06
cd09934	104	cd09934, SH2_Tec_family, Src homology 2 (SH2) doma	1e-06
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	1e-06
cd10413	108	cd10413, SH2_Grb7, Src homology 2 (SH2) domain fou	1e-06
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	1e-06
cd12081	62	cd12081, SH3_CASK, Src Homology 3 domain of Calciu	1e-06
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	1e-06
cd10364	101	cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain	1e-06
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-06
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	2e-06
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	2e-06
cd10418	101	cd10418, SH2_Src_Fyn_isoform_a_like, Src homology	2e-06
cd10358	100	cd10358, SH2_PTK6_Brk, Src homology 2 domain found	2e-06
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	2e-06
cd11967	57	cd11967, SH3_SASH1, Src homology 3 domain of SAM A	2e-06
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	2e-06
cd09945	98	cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2	2e-06
smart00326	56	smart00326, SH3, Src homology 3 domains	3e-06
cd10363	104	cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain	3e-06
cd10368	101	cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain	3e-06
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	3e-06
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	3e-06
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	4e-06
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	4e-06
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	4e-06
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	4e-06
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	5e-06
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	5e-06
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	5e-06
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	5e-06
cd10419	101	cd10419, SH2_Src_Fyn_isoform_b_like, Src homology	5e-06
cd10407	103	cd10407, SH2_Vav3, Src homology 2 (SH2) domain fou	5e-06
cd10397	106	cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain	6e-06
cd10344	104	cd10344, SH2_SLAP, Src homology 2 domain found in	6e-06
cd11955	53	cd11955, SH3_srGAP1-3, Src homology 3 domain of Sl	7e-06
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	7e-06
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	7e-06
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	7e-06
cd11764	54	cd11764, SH3_Eps8, Src Homology 3 domain of Epider	9e-06
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	9e-06
cd11866	53	cd11866, SH3_SKAP1-like, Src Homology 3 domain of	1e-05
cd11911	55	cd11911, SH3_CIP4-like, Src Homology 3 domain of C	1e-05
cd11879	56	cd11879, SH3_Bem1p_2, Second Src Homology 3 domain	1e-05
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	1e-05
cd09942	110	cd09942, SH2_nSH2_p85_like, N-terminal Src homolog	1e-05
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	1e-05
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	1e-05
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	1e-05
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	1e-05
cd12004	56	cd12004, SH3_Lyn, Src homology 3 domain of Lyn Pro	1e-05
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	1e-05
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	2e-05
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	2e-05
cd10400	103	cd10400, SH2_SAP1a, Src homology 2 (SH2) domain fo	2e-05
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	2e-05
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	2e-05
cd10415	108	cd10415, SH2_Grb10, Src homology 2 (SH2) domain fo	2e-05
cd09927	116	cd09927, SH2_Tensin_like, Src homology 2 domain fo	2e-05
cd10391	98	cd10391, SH2_SHE, Src homology 2 domain found in S	2e-05
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	3e-05
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	3e-05
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	3e-05
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	3e-05
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	3e-05
cd10342	103	cd10342, SH2_SAP1, Src homology 2 (SH2) domain fou	3e-05
cd10402	105	cd10402, SH2_C-SH2_Zap70, C-terminal Src homology	3e-05
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	3e-05
cd12005	54	cd12005, SH3_Lck, Src homology 3 domain of Lck Pro	3e-05
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	3e-05
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	3e-05
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	3e-05
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	3e-05
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	3e-05
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	3e-05
cd11808	53	cd11808, SH3_Alpha_Spectrin, Src homology 3 domain	4e-05
cd11861	61	cd11861, SH3_DLG-like, Src Homology 3 domain of Di	4e-05
cd10396	108	cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain	4e-05
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	4e-05
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	4e-05
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	4e-05
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	4e-05
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	5e-05
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	5e-05
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	5e-05
cd10410	97	cd10410, SH2_SH2B1, Src homology 2 (SH2) domain fo	5e-05
cd10388	101	cd10388, SH2_SOCS7, Src homology 2 (SH2) domain fo	5e-05
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	6e-05
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	6e-05
cd10387	100	cd10387, SH2_SOCS6, Src homology 2 (SH2) domain fo	7e-05
cd10351	103	cd10351, SH2_SH2D4B, Src homology 2 domain found i	7e-05
cd12072	57	cd12072, SH3_FNBP1L, Src Homology 3 domain of Form	7e-05
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	7e-05
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	1e-04
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	1e-04
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	1e-04
cd10398	106	cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain	1e-04
cd12062	62	cd12062, SH3_Caskin1, Src Homology 3 domain of CAS	1e-04
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	1e-04
cd12035	62	cd12035, SH3_MPP1-like, Src Homology 3 domain of M	1e-04
cd11864	58	cd11864, SH3_PEX13_eumet, Src Homology 3 domain of	1e-04
cd10362	101	cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain	1e-04
cd11761	57	cd11761, SH3_FCHSD_1, First Src Homology 3 domain	1e-04
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	1e-04
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	2e-04
cd11899	58	cd11899, SH3_Nck2_1, First Src Homology 3 domain o	2e-04
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	2e-04
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	2e-04
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	2e-04
cd11904	57	cd11904, SH3_Nck1_3, Third Src Homology 3 domain o	2e-04
cd11953	57	cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of	2e-04
cd11897	55	cd11897, SH3_SNX18, Src Homology 3 domain of Sorti	2e-04
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	2e-04
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	2e-04
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	2e-04
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	2e-04
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	2e-04
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	3e-04
cd12045	53	cd12045, SH3_SKAP2, Src Homology 3 domain of Src K	3e-04
cd10718	88	cd10718, SH2_CIS, Src homology 2 (SH2) domain foun	3e-04
cd11930	55	cd11930, SH3_SH3RF1_2, Second Src Homology 3 domai	3e-04
cd11966	56	cd11966, SH3_ASAP2, Src homology 3 domain of ArfGA	3e-04
cd11880	61	cd11880, SH3_Caskin, Src Homology 3 domain of CASK	3e-04
cd11900	59	cd11900, SH3_Nck1_1, First Src Homology 3 domain o	3e-04
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	4e-04
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	5e-04
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	6e-04
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	6e-04
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	7e-04
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	7e-04
cd12063	62	cd12063, SH3_Caskin2, Src Homology 3 domain of CAS	7e-04
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	8e-04
cd12039	62	cd12039, SH3_MPP3, Src Homology 3 domain of Membra	8e-04
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	0.001
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	0.001
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	0.001
cd10371	100	cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain	0.001
cd12044	53	cd12044, SH3_SKAP1, Src Homology 3 domain of Src K	0.001
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	0.001
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	0.001
cd10399	106	cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain	0.001
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	0.001
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	0.001
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	0.002
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	0.002
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	0.002
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	0.002
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	0.002
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	0.002
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	0.002
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	0.002
cd11886	55	cd11886, SH3_BOI, Src Homology 3 domain of fungal	0.002
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	0.002
cd12034	61	cd12034, SH3_MPP4, Src Homology 3 domain of Membra	0.002
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	0.002
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	0.002
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	0.002
cd10389	97	cd10389, SH2_SHB, Src homology 2 domain found in S	0.002
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	0.003
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	0.003
cd10346	97	cd10346, SH2_SH2B_family, Src homology 2 (SH2) dom	0.003
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	0.003
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	0.003
cd11757	52	cd11757, SH3_SH3BP4, Src Homology 3 domain of SH3	0.003
cd11885	55	cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 d	0.003
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	0.004
cd12036	63	cd12036, SH3_MPP5, Src Homology 3 domain of Membra	0.004
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	0.004
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	0.004
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	0.004

>gnl|CDD|198180 cd09926, SH2_CRK_like, Src homology 2 domain found in cancer-related signaling adaptor protein CRK

 Score =  161 bits (410), Expect = 1e-50
 Identities = 62/105 (59%), Positives = 81/105 (77%), Gaps = 2/105 (1%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
           FD  DR+SWYFG M+RQEAQ +L  ++  G FLVRDS+TI G+YVL V EN++VSHYIIN
Sbjct: 1   FDSSDRSSWYFGPMSRQEAQELLQGQRH-GVFLVRDSSTIPGDYVLSVSENSRVSHYIIN 59

Query: 65  KIT-NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
            +      Q+ Y+IGD+ F DLP+LL FYK+HYLDT+ LI+PA++
Sbjct: 60  SLGQPAPNQSRYRIGDQEFDDLPALLEFYKLHYLDTTTLIEPASR 104

SH2 domain in the CRK proteins. CRKI (SH2-SH3) and CRKII (SH2-SH3-SH3) are splicing isoforms of the oncoprotein CRK. CRKs regulate transcription and cytoskeletal reorganization for cell growth and motility by linking tyrosine kinases to small G proteins. The SH2 domain of CRK associates with tyrosine-phosphorylated receptors or components of focal adhesions, such as p130Cas and paxillin. CRK transmits signals to small G proteins through effectors that bind its SH3 domain, such as C3G, the guanine-nucleotide exchange factor (GEF) for Rap1 and R-Ras, and DOCK180, the GEF for Rac6. The binding of p130Cas to the CRK-C3G complex activates Rap1, leading to regulation of cell adhesion, and activates R-Ras, leading to JNK-mediated activation of cell proliferation, whereas the binding of CRK DOCK180 induces Rac1-mediated activation of cellular migration. The activity of the different splicing isoforms varies greatly with CRKI displaying substantial transforming activity, CRKII less so, and phosphorylated CRKII with no biological activity whatsoever. CRKII has a linker region with a phosphorylated Tyr and an additional C-terminal SH3 domain. The phosphorylated Tyr creates a binding site for its SH2 domain which disrupts the association between CRK and its SH2 target proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|212693 cd11759, SH3_CRK_C, C-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score =  120 bits (303), Expect = 3e-35
 Identities = 45/57 (78%), Positives = 51/57 (89%)

Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 261
           PA+ARV Q RVPNAYDKTAL LE+GD++KVTK N++GQWEGELNGK GHFPFTHVE 
Sbjct: 1   PAYARVIQKRVPNAYDKTALALEVGDLVKVTKINVSGQWEGELNGKVGHFPFTHVEL 57

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The C-terminal SH3 domain of CRK has not been shown to bind any target protein; it acts as a negative regulator of CRK function by stabilizing a structure that inhibits the access by target proteins to the N-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score =  104 bits (262), Expect = 5e-29
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V A +DF GND +DLPFKK +IL V+ K EE WW A+N  G+ G IPVPYV+K
Sbjct: 1   EYVRALFDFPGNDDEDLPFKKGEILTVIRKPEEQWWNARNSEGKTGMIPVPYVEK 55

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|215658 pfam00017, SH2, SH2 domain

 Score = 86.5 bits (215), Expect = 8e-22
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G ++R+EA+ +LL+ K +G FLVR+S +  G+Y L V+++ +V HY I      +  
Sbjct: 1  WYHGKISREEAERLLLNPKPDGTFLVRESESKPGDYTLSVRDDGRVKHYRIQS---LDNG 57

Query: 73 TCYKIGDKTFSDLPSLLAFY 92
            Y  G  TF+ LP L+  Y
Sbjct: 58 GYYISGGVTFNSLPELVEHY 77

Length = 77

>gnl|CDD|214585 smart00252, SH2, Src homology 2 domains

 Score = 84.6 bits (210), Expect = 5e-21
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G ++R+EA+ +L +E D G FLVRDS +  G+YVL V+   KV HY I +    E  
Sbjct: 3  WYHGFISREEAEKLLKNEGD-GDFLVRDSESSPGDYVLSVRVKGKVKHYRIRR---NEDG 58

Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYL 97
            Y  G + F  L  L+  Y+ + L
Sbjct: 59 KFYLEGGRKFPSLVELVEHYQKNSL 83

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae. Length = 84

>gnl|CDD|198173 cd00173, SH2, Src homology 2 (SH2) domain

 Score = 84.4 bits (209), Expect = 6e-21
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK-ENNKVSHYIINKITNTE 70
           W+ G ++R+EA+ +L  + D G FLVR+S++  G+YVL V+  + KV HY+I +  N  
Sbjct: 1  PWFHGSISREEAERLLRGKPD-GTFLVRESSSEPGDYVLSVRSGDGKVKHYLIER--NEG 57

Query: 71 QQTCYKIGDKTFSDLPSLLAFY 92
                   +TF  LP L+  Y
Sbjct: 58 GYYLLGGSGRTFPSLPELVEHY 79

In general, SH2 domains are involved in signal transduction; they bind pTyr-containing polypeptide ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. They are present in a wide array of proteins including: adaptor proteins (Nck1, Crk, Grb2), scaffolds (Slp76, Shc, Dapp1), kinases (Src, Syk, Fps, Tec), phosphatases (Shp-1, Shp-2), transcription factors (STAT1), Ras signaling molecules (Ras-Gap), ubiquitination factors (c-Cbl), cytoskeleton regulators (Tensin), signal regulators (SAP), and phospholipid second messengers (PLCgamma), amongst others. Length = 79

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 80.3 bits (199), Expect = 9e-20
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
             +V A YD+   DPD+L FKK DI+ V+ K ++ WW  +   G+ G  P  YV+
Sbjct: 2   GPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 73.0 bits (180), Expect = 4e-17
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
           +A YD+   +PD+L FKK DI+IV+ K ++ WW  +   G+ G IP 
Sbjct: 1   VALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 71.7 bits (177), Expect = 1e-16
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
              A YD++  D D+L FKK DI+ V+ KD++ WW  +   G  G  P  Y
Sbjct: 1   YARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 71.2 bits (175), Expect = 3e-16
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVV--SKDEEHWWTAQNISGEVGSIPVPYVQK 165
           + IAKY+F+G   +DLPFKK DIL +V  +KD  +W+ A+N  G  G IP  YVQK
Sbjct: 3   ECIAKYNFNGASEEDLPFKKGDILTIVAVTKD-PNWYKAKNKDGREGMIPANYVQK 57

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 70.0 bits (172), Expect = 6e-16
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
            V+A YDF   +P DLP +K +  +V+    EHWW A++ +G  G IP  YV +
Sbjct: 1   IVVALYDFQPIEPGDLPLEKGEEYVVLDDSNEHWWRARDKNGNEGYIPSNYVTE 54

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198200 cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in the Breast Cancer Anti-estrogen Resistance protein 3

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G + RQ A++++  E D   FLVRDS +  G+YVL  +   +  H+ IN++     +
Sbjct: 8  WYHGRIPRQVAESLVQREGD---FLVRDSLSSPGDYVLTCRWKGQPLHFKINRVVLRPSE 64

Query: 73 TC----YKIGDKTFSDLPSLLAFY 92
                Y+  D+ F  +P+L+ FY
Sbjct: 65 AYTRVQYQFEDEQFDSIPALVHFY 88

BCAR3 is part of a growing family of guanine nucleotide exchange factors is responsible for activation of Ras-family GTPases, including Sos1 and 2, GRF1 and 2, CalDAG-GEF/GRP1-4, C3G, cAMP-GEF/Epac 1 and 2, PDZ-GEFs, MR-GEF, RalGDS family members, RalGPS, RasGEF, Smg GDS, and phospholipase C(epsilon). 12102558 21262352 BCAR3 binds to the carboxy-terminus of BCAR1/p130Cas, a focal adhesion adapter protein. Over expression of BCAR1 (p130Cas) and BCAR3 induces estrogen independent growth in normally estrogen-dependent cell lines. They have been linked to resistance to anti-estrogens in breast cancer, Rac activation, and cell motility, though the BCAR3/p130Cas complex is not required for this activity in BCAR3. Many BCAR3-mediated signaling events in epithelial and mesenchymal cells are independent of p130Cas association. Structurally these proteins contain a single SH2 domain upstream of their RasGEF domain, which is responsible for the ability of BCAR3 to enhance p130Cas over-expression-induced migration. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 136

>gnl|CDD|198223 cd10360, SH2_Srm, Src homology 2 (SH2) domain found in Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites (srm)

 Score = 65.4 bits (159), Expect = 7e-14
 Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          WYF  ++R +AQ +LLS  +  GAFL+R S + LG Y L V+   KV HY   +I     
Sbjct: 2  WYFSGISRTQAQQLLLSPPNEPGAFLIRPSESSLGGYSLSVRAQAKVCHY---RICMAPS 58

Query: 72 QTCYKIGDKTFSDLPSLLAFY 92
           + Y    + F  L  LLA+Y
Sbjct: 59 GSLYLQKGRLFPGLEELLAYY 79

Srm is a nonreceptor protein kinase that has two SH2 domains, a SH3 domain, and a kinase domain with a tyrosine residue for autophosphorylation. However it lacks an N-terminal glycine for myristoylation and a C-terminal tyrosine which suppresses kinase activity when phosphorylated. Srm is most similar to members of the Tec family who other members include: Tec, Btk/Emb, and Itk/Tsk/Emt. However Srm differs in its N-terminal unique domain it being much smaller than in the Tec family and is closer to Src. Srm is thought to be a new family of nonreceptor tyrosine kinases that may be redundant in function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 79

>gnl|CDD|198210 cd10347, SH2_Nterm_shark_like, N-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 12 SWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
           WY G ++R+ A+A+LL     +G FLVR+S +  G+YVL +    +V HY I +  + E
Sbjct: 2  RWYHGKISREVAEALLLREGGRDGLFLVRESTSAPGDYVLSLLAQGEVLHYQIRR--HGE 59

Query: 71 QQTCYKIGDKTFSDLPSLLAFY 92
                 G   F  L +L+  Y
Sbjct: 60 DAFFSDDGPLIFHGLDTLIEHY 81

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in the carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|199827 cd09933, SH2_Src_family, Src homology 2 (SH2) domain found in the Src family of non-receptor tyrosine kinases

 Score = 64.5 bits (158), Expect = 2e-13
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
          W+FG + R++A+ +LL+  +  G FL+R+S T  G Y L V++ +      V HY   +I
Sbjct: 5  WFFGKIKRKDAEKLLLAPGNPRGTFLIRESETTPGAYSLSVRDGDDARGDTVKHY---RI 61

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y     TF  L  L+  Y   
Sbjct: 62 RKLDNGGYYITTRATFPTLQELVQHYSKD 90

The Src family kinases are nonreceptor tyrosine kinases that have been implicated in pathways regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. It is thought that transforming ability of Src is linked to its ability to activate key signaling molecules in these pathways, rather than through direct activity. As such blocking Src activation has been a target for drug companies. Src family members can be divided into 3 groups based on their expression pattern: 1) Src, Fyn, and Yes; 2) Blk, Fgr, Hck, Lck, and Lyn; and 3) Frk-related kinases Frk/Rak and Iyk/Bsk Of these, cellular c-Src is the best studied and most frequently implicated in oncogenesis. The c-Src contains five distinct regions: a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Src exists in both active and inactive conformations. Negative regulation occurs through phosphorylation of Tyr, resulting in an intramolecular association between phosphorylated Tyr and the SH2 domain of SRC, which locks the protein in a closed conformation. Further stabilization of the inactive state occurs through interactions between the SH3 domain and a proline-rich stretch of residues within the kinase domain. Conversely, dephosphorylation of Tyr allows SRC to assume an open conformation. Full activity requires additional autophosphorylation of a Tyr residue within the catalytic domain. Loss of the negative-regulatory C-terminal segment has been shown to result in increased activity and transforming potential. Phosphorylation of the C-terminal Tyr residue by C-terminal Src kinase (Csk) and Csk homology kinase results in increased intramolecular interactions and consequent Src inactivation. Specific phosphatases, protein tyrosine phosphatase a (PTPa) and the SH-containing phosphatases SHP1/SHP2, have also been shown to take a part in Src activation. Src is also activated by direct binding of focal adhesion kinase (Fak) and Crk-associated substrate (Cas) to the SH2 domain. SRC activity can also be regulated by numerous receptor tyrosine kinases (RTKs), such as Her2, epidermal growth factor receptor (EGFR), fibroblast growth factor receptor, platelet-derived growth factor receptor (PDGFR), and vascular endothelial growth factor receptor (VEGFR). In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 61.3 bits (150), Expect = 8e-13
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
            A D   L L+ GD++KV   + NG WEGE  G+ G  P ++VE
Sbjct: 9   VATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|199828 cd09941, SH2_Grb2_like, Src homology 2 domain found in Growth factor receptor-bound protein 2 (Grb2) and similar proteins

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 11  NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
           + W+ G ++R EA+ IL++++ +GAFL+R+S +  G++ L VK  N V H+ + +    +
Sbjct: 3   HPWFHGKISRAEAEEILMNQRPDGAFLIRESESSPGDFSLSVKFGNDVQHFKVLR----D 58

Query: 71  QQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
               Y +    F+ L  L+ +++   +  +  I    
Sbjct: 59  GAGKYFLWVVKFNSLNELVDYHRTTSVSRNQQIFLRD 95

The adaptor proteins here include homologs Grb2 in humans, Sex muscle abnormal protein 5 (Sem-5) in Caenorhabditis elegans, and Downstream of receptor kinase (drk) in Drosophila melanogaster. They are composed of one SH2 and two SH3 domains. Grb2/Sem-5/drk regulates the Ras pathway by linking the tyrosine kinases to the Ras guanine nucleotide releasing protein Sos, which converts Ras to the active GTP-bound state. The SH2 domain of Grb2/Sem-5/drk binds class II phosphotyrosyl peptides while its SH3 domain binds to Sos and Sos-derived, proline-rich peptides. Besides it function in Ras signaling, Grb2 is also thought to play a role in apoptosis. Unlike most SH2 structures in which the peptide binds in an extended conformation (such that the +3 peptide residue occupies a hydrophobic pocket in the protein, conferring a modest degree of selectivity), Grb2 forms several hydrogen bonds via main chain atoms with the side chain of +2 Asn. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|198185 cd09931, SH2_C-SH2_SHP_like, C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 7/83 (8%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN-KVSHYIINKITNTEQ 71
          W+ G ++ +EA+ +LL +   G+FLVR+S +  G++VL V+ ++ KV+H +I       +
Sbjct: 2  WFHGHLSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDDKVTHIMIR--CQGGK 59

Query: 72 QTCYKIGD-KTFSDLPSLLAFYK 93
             Y +G  + F  L  L+  YK
Sbjct: 60 ---YDVGGGEEFDSLTDLVEHYK 79

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
             A  DF      DL FKK ++L ++SK  + WW A+N  G  G +P  Y++ 
Sbjct: 2   YEALSDFQAEQEGDLSFKKGEVLRIISKRADGWWLAENSKGNRGLVPKTYLKV 54

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198196 cd09943, SH2_Nck_family, Src homology 2 (SH2) domain found in the Nck family

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 11  NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
             WY+G +TR +A+ +L      G FL+RDS +  G+Y + +K   +  H+   K+    
Sbjct: 1   QPWYYGRITRHQAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHF---KVQV-- 55

Query: 71  QQTCYKIGDKTFSDLPSLLAFYKVHYLDTSP 101
               Y IG + F  +  L+  YK   + TS 
Sbjct: 56  VDNVYCIGQRKFHTMDELVEHYKKAPIFTSE 86

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 93

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 59.2 bits (144), Expect = 7e-12
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYVQ 164
            V+A Y F G + ++L F+K + L ++ K  D+  WW A+N  G  G +P  YV+
Sbjct: 1   VVVALYPFTGENDEELSFEKGERLEIIEKPEDDPDWWKARNALGTTGLVPRNYVE 55

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|198190 cd09937, SH2_csk_like, Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk)

 Score = 60.4 bits (147), Expect = 7e-12
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 13/85 (15%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII----NKITN 68
          W+ G ++R+EA+  LL   ++G FLVR+S    G+Y LCV    KV HY +     K+T 
Sbjct: 5  WFHGKISREEAER-LLQPPEDGLFLVRESTNYPGDYTLCVSFEGKVEHYRVIYRNGKLTI 63

Query: 69 TEQQTCYKIGDKTFSDLPSLLAFYK 93
           E++         F +L  L+  Y 
Sbjct: 64 DEEE--------YFENLIQLVEHYT 80

Both the C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK) are members of the CSK-family of protein tyrosine kinases. These proteins suppress activity of Src-family kinases (SFK) by selectively phosphorylating the conserved C-terminal tail regulatory tyrosine by a similar mechanism. CHK is also capable of inhibiting SFKs by a non-catalytic mechanism that involves binding of CHK to SFKs to form stable protein complexes. The unphosphorylated form of SFKs is inhibited by CSK and CHK by a two-step mechanism. The first step involves the formation of a complex of SFKs with CSK/CHK with the SFKs in the complex are inactive. The second step, involves the phosphorylation of the C-terminal tail tyrosine of SFKs, which then dissociates and adopt an inactive conformation. The structural basis of how the phosphorylated SFKs dissociate from CSK/CHK to adopt the inactive conformation is not known. The inactive conformation of SFKs is stabilized by two intramolecular inhibitory interactions: (a) the pYT:SH2 interaction in which the phosphorylated C-terminal tail tyrosine (YT) binds to the SH2 domain, and (b) the linker:SH3 interaction of which the SH2-kinase domain linker binds to the SH3 domain. SFKs are activated by multiple mechanisms including binding of the ligands to the SH2 and SH3 domains to displace the two inhibitory intramolecular interactions, autophosphorylation, and dephosphorylation of YT. By selective phosphorylation and the non-catalytic inhibitory mechanism CSK and CHK are able to inhibit the active forms of SFKs. CSK and CHK are regulated by phosphorylation and inter-domain interactions. They both contain SH3, SH2, and kinase domains separated by the SH3-SH2 connector and SH2 kinase linker, intervening segments separating the three domains. They lack a conserved tyrosine phosphorylation site in the kinase domain and the C-terminal tail regulatory tyrosine phosphorylation site. The CSK SH2 domain is crucial for stabilizing the kinase domain in the active conformation. A disulfide bond here regulates CSK kinase activity. The subcellular localization and activity of CSK are regulated by its SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198217 cd10354, SH2_Cterm_RasGAP, C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+ G ++R+EA  +L+     G+FLVR+S+   G+Y L  + N  + H+   KI  T   
Sbjct: 2  WFHGKISREEAYNMLVKVGGPGSFLVRESDNTPGDYSLSFRVNEGIKHF---KIIPTGNN 58

Query: 73 TCYKIGDKTFSDLPSLLAFY 92
            + +G + FS L  ++  Y
Sbjct: 59 Q-FMMGGRYFSSLDDVIDRY 77

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|198233 cd10370, SH2_Src_Src42, Src homology 2 (SH2) domain found in the Src oncogene at 42A (Src42)

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 13 WYFGMMTRQEAQ-AILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          WYFG + R EA+  +LL E ++GAFL+RDS +   +Y L V++ + V HY I ++     
Sbjct: 5  WYFGKIKRIEAEKKLLLPENEHGAFLIRDSESRHNDYSLSVRDGDTVKHYRIRQLDEGG- 63

Query: 72 QTCYKIGDK-TFSDLPSLLAFYKV 94
             + I  + TF  L  L+  Y  
Sbjct: 64 ---FFIARRTTFRTLQELVEHYSK 84

Src42 is a member of the Src non-receptor type tyrosine kinase family of proteins. The integration of receptor tyrosine kinase-induced RAS and Src42 signals by Connector eNhancer of KSR (CNK) as a two-component input is essential for RAF activation in Drosophila. Src42 is present in a wide variety of organisms including: California sea hare, pea aphid, yellow fever mosquito, honey bee, Panamanian leafcutter ant, and sea urchin. Src42 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198218 cd10355, SH2_DAPP1_BAM32_like, Src homology 2 domain found in dual adaptor for phosphotyrosine and 3-phosphoinositides ( DAPP1)/B lymphocyte adaptor molecule of 32 kDa (Bam32)-like proteins

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
            WY G +TR  A+A+LLS   +G++L+R+SN   G + L V+  + V H+ +        
Sbjct: 7   GWYHGNLTRHAAEALLLSNGVDGSYLLRNSNEGTGLFSLSVRAKDSVKHFHV-----EYT 61

Query: 72  QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLI 103
              +K G   F++  SL  F  V +    PLI
Sbjct: 62  GYSFKFG---FNEFSSLQDF--VKHFANQPLI 88

DAPP1/Bam32 contains a putative myristoylation site at its N-terminus, followed by a SH2 domain, and a pleckstrin homology (PH) domain at its C-terminus. DAPP1 could potentially be recruited to the cell membrane by any of these domains. Its putative myristoylation site could facilitate the interaction of DAPP1 with the lipid bilayer. Its SH2 domain may also interact with phosphotyrosine residues on membrane-associated proteins such as activated tyrosine kinase receptors. And finally its PH domain exhibits a high-affinity interaction with the PtdIns(3,4,5)P(3) PtdIns(3,4)P(2) second messengers produced at the cell membrane following the activation of PI 3-kinases. DAPP1 is thought to interact with both tyrosine phosphorylated proteins and 3-phosphoinositides and therefore may play a role in regulating the location and/or activity of such proteins(s) in response to agonists that elevate PtdIns(3,4,5)P(3) and PtdIns(3,4)P(2). This protein is likely to play an important role in triggering signal transduction pathways that lie downstream from receptor tyrosine kinases and PI 3-kinase. It is likely that DAPP1 functions as an adaptor to recruit other proteins to the plasma membrane in response to extracellular signals. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 92

>gnl|CDD|198197 cd09944, SH2_Grb7_family, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 8  HDRNSWYFGMMTRQEAQAIL--LSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
          H    W+ G ++R EA  ++      D G FLVR+S +  G +VL +K   K+ HY I  
Sbjct: 2  HRSQPWFHGGISRDEAARLIRQQGLVD-GVFLVRESQSNPGAFVLSLKHGQKIKHYQIIP 60

Query: 66 ITNTEQQTCYKI--GDKTFSDLPSLLAFYKV 94
          I + E Q  + +  G   F DL  L+ FY++
Sbjct: 61 IED-EGQWYFTLDDGVTKFYDLLQLVEFYQL 90

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. There are 3 members of the Grb7 family of proteins: Grb7, Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR). Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198228 cd10365, SH2_Src_Src, Src homology 2 (SH2) domain found in tyrosine kinase sarcoma (Src)

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      F+ L  L+A+Y  H
Sbjct: 65 ---DSGGFYITSRTQFNSLQQLVAYYSKH 90

Src is a member of the Src non-receptor type tyrosine kinase family of proteins. Src is thought to play a role in the regulation of embryonic development and cell growth. Members here include v-Src and c-Src. v-Src lacks the C-terminal inhibitory phosphorylation site and is therefore constitutively active as opposed to normal cellular src (c-Src) which is only activated under certain circumstances where it is required (e.g. growth factor signaling). v-Src is an oncogene whereas c-Src is a proto-oncogene. c-Src consists of three domains, an N-terminal SH3 domain, a central SH2 domain and a tyrosine kinase domain. The SH2 and SH3 domains work together in the auto-inhibition of the kinase domain. The phosphorylation of an inhibitory tyrosine near the c-terminus of the protein produces a binding site for the SH2 domain which then facilitates binding of the SH3 domain to a polyproline site within the linker between the SH2 domain and the kinase domain. Binding of the SH3 domain inactivates the enzyme. This allows for multiple mechanisms for c-Src activation: dephosphorylation of the C-terminal tyrosine by a protein tyrosine phosphatase, binding of the SH2 domain by a competitive phospho-tyrosine residue, or competitive binding of a polyproline binding site to the SH3 domain. Unlike most other Src members Src lacks cysteine residues in the SH4 domain that undergo palmitylation. Serine and threonine phosphorylation sites have also been identified in the unique domains of Src and are believed to modulate protein-protein interactions or regulate catalytic activity. Alternatively spliced forms of Src, which contain 6- or 11-amino acid insertions in the SH3 domain, are expressed in CNS neurons. c-Src has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A YDF   +P+ L F + +  +++ +   HWW   N SGE G +P  YV+
Sbjct: 4   ALYDFKSAEPNTLSFSEGETFLLLERSNAHWWLVTNHSGETGYVPANYVK 53

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198189 cd09935, SH2_ABL, Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          +++SWY G ++R  A+  LLS   NG+FLVR+S +  G Y + ++ + +V HY I++   
Sbjct: 1  EKHSWYHGPISRNAAE-YLLSSGINGSFLVRESESSPGQYSISLRYDGRVYHYRISE--- 56

Query: 69 TEQQTCYKIGDKTFSDLPSLLAFYKVH 95
                Y   +  F+ L  L+  +  +
Sbjct: 57 DSDGKVYVTQEHRFNTLAELVHHHSKN 83

ABL-family proteins are highly conserved tyrosine kinases. Each ABL protein contains an SH3-SH2-TK (Src homology 3-Src homology 2-tyrosine kinase) domain cassette, which confers autoregulated kinase activity and is common among nonreceptor tyrosine kinases. Several types of posttranslational modifications control ABL catalytic activity, subcellular localization, and stability, with consequences for both cytoplasmic and nuclear ABL functions. Binding partners provide additional regulation of ABL catalytic activity, substrate specificity, and downstream signaling. By combining this cassette with actin-binding and -bundling domain, ABL proteins are capable of connecting phosphoregulation with actin-filament reorganization. Vertebrate paralogs, ABL1 and ABL2, have evolved to perform specialized functions. ABL1 includes nuclear localization signals and a DNA binding domain which is used to mediate DNA damage-repair functions, while ABL2 has additional binding capacity for actin and for microtubules to enhance its cytoskeletal remodeling functions. SH2 is involved in several autoinhibitory mechanism that constrain the enzymatic activity of the ABL-family kinases. In one mechanism SH2 and SH3 cradle the kinase domain while a cap sequence stabilizes the inactive conformation resulting in a locked inactive state. Another involves phosphatidylinositol 4,5-bisphosphate (PIP2) which binds the SH2 domain through residues normally required for phosphotyrosine binding in the linker segment between the SH2 and kinase domains. The SH2 domain contributes to ABL catalytic activity and target site specificity. It is thought that the ABL catalytic site and SH2 pocket have coevolved to recognize the same sequences. Recent work now supports a hierarchical processivity model in which the substrate target site most compatible with ABL kinase domain preferences is phosphorylated with greatest efficiency. If this site is compatible with the ABL SH2 domain specificity, it will then reposition and dock in the SH2 pocket. This mechanism also explains how ABL kinases phosphorylates poor targets on the same substrate if they are properly positioned and how relatively poor substrate proteins might be recruited to ABL through a complex with strong substrates that can also dock with the SH2 pocket. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 94

>gnl|CDD|198224 cd10361, SH2_Fps_family, Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDS---NTILGNYVLCVKENNKVSHYI 62
             +   +Y G++ R++A+ +L   K++G FLVR +          VL V+ + K+ H++
Sbjct: 1  KDLENEPYYHGLLPREDAEELL---KNDGDFLVRKTEPKGGGKRKLVLSVRWDGKIRHFV 57

Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
          IN+  +  +   Y I  K+F  +  L+ +Y+  
Sbjct: 58 INR-DDGGK---YYIEGKSFKSISELINYYQKT 86

The Fps family consists of members Fps/Fes and Fer/Flk/Tyk3. They are cytoplasmic protein-tyrosine kinases implicated in signaling downstream from cytokines, growth factors and immune receptors. Fes/Fps/Fer contains three coiled-coil regions, an SH2 (Src-homology-2) and a TK (tyrosine kinase catalytic) domain signature. Members here include: Fps/Fes, Fer, Kin-31, and In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 90

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 54.2 bits (131), Expect = 3e-10
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +V A YDF+  +P +L F++ DI+ V+   +  WW  + + G VG  P  YVQ 
Sbjct: 1   RVQALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGE-LRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198206 cd10343, SH2_SHIP, Src homology 2 (SH2) domain found in SH2-containing inositol-5'-phosphatase (SHIP) and SLAM-associated protein (SAP)

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           WY G +TR +A+ +L     +G+FLVRDS ++ G Y LCV   N V  Y I  + N E 
Sbjct: 4  PWYHGNITRSKAEELLSKAGKDGSFLVRDSESVSGAYALCVLYQNCVHTYRI--LPNAED 61

Query: 72 ----QTCYKIGDKTFSDLPSLLAFYK 93
              Q    +  + F+ LP L+ FY+
Sbjct: 62 KLSVQASEGVPVRFFTTLPELIEFYQ 87

The SH2-containing inositol-5'-phosphatase, SHIP (also called SHIP1/SHIP1a), is a hematopoietic-restricted phosphatidylinositide phosphatase that translocates to the plasma membrane after extracellular stimulation and hydrolyzes the phosphatidylinositol-3-kinase (PI3K)-generated second messenger PI-3,4,5-P3 (PIP3) to PI-3,4-P2. As a result, SHIP dampens down PIP3 mediated signaling and represses the proliferation, differentiation, survival, activation, and migration of hematopoietic cells. PIP3 recruits lipid-binding pleckstrin homology(PH) domain-containing proteins to the inner wall of the plasma membrane and activates them. PH domain-containing downstream effectors include the survival/proliferation enhancing serine/threonine kinase, Akt (protein kinase B), the tyrosine kinase, Btk, the regulator of protein translation, S6K, and the Rac and cdc42 guanine nucleotide exchange factor, Vav. SHIP is believed to act as a tumor suppressor during leukemogenesis and lymphomagenesis, and may play a role in activating the immune system to combat cancer. SHIP contains an N-terminal SH2 domain, a centrally located phosphatase domain that specifically hydrolyzes the 5'-phosphate from PIP3, PI-4,5-P2 and inositol-1,3,4,5- tetrakisphosphate (IP4), a C2 domain, that is an allosteric activating site when bound by SHIP's enzymatic product, PI-3,4-P2; 2 NPXY motifs that bind proteins with a phosphotyrosine binding (Shc, Dok 1, Dok 2) or an SH2 (p85a, SHIP2) domain; and a proline-rich domain consisting of four PxxP motifs that bind a subset of SH3-containing proteins including Grb2, Src, Lyn, Hck, Abl, PLCg1, and PIAS1. The SH2 domain of SHIP binds to the tyrosine phosphorylated forms of Shc, SHP-2, Doks, Gabs, CD150, platelet-endothelial cell adhesion molecule, Cas, c-Cbl, immunoreceptor tyrosine-based inhibitory motifs (ITIMs), and immunoreceptor tyrosine-based activation motifs (ITAMs). The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX(V/I), which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 53.2 bits (128), Expect = 8e-10
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +VIA + +   + D+L F+K DI+ V+SKD+  WW  + ++G+ G  P  YV+
Sbjct: 1   QVIALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGE-LNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 53.0 bits (128), Expect = 9e-10
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPY 162
            +A YD++    DDL FKK D L ++   +  WW A+++S G+ G IP  Y
Sbjct: 2   YVALYDYEARTDDDLSFKKGDRLQILDDSDGDWWLARHLSTGKEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|199829 cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src homology 2 (N-SH2) domain in Phospholipase C gamma

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 8   HDRNSWYFGMMT--RQEAQAILLS--EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
           H    W+ G +   R EA+ +LL   E  +G FLVR+S T +G+Y L    N KV H  I
Sbjct: 1   HFTEPWFHGKLGDGRDEAEKLLLEYCEGGDGTFLVRESETFVGDYTLSFWRNGKVQHCRI 60

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
                  ++  Y   +  F  L  L+ +Y+ + L  +
Sbjct: 61  RSRQENGEKKYYLTDNLVFDSLYELIDYYRQNPLRCA 97

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198215 cd10352, SH2_a2chimerin_b2chimerin, Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
             Y G+++R+EA   LLS   +G++L+R+S+   G Y L ++ N KV +Y   K+    
Sbjct: 6  GREYHGLISREEA-EQLLSGASDGSYLIRESSRDDGYYTLSLRFNGKVKNY---KLYYDG 61

Query: 71 QQTCYKIGDKTFSDLPSLLA 90
          +   + +G+K F  +  L+A
Sbjct: 62 KNHYHYVGEKRFDTIHDLVA 81

Chimerins are a family of phorbol ester- and diacylglycerol-responsive GTPase-activating proteins. Alpha1-chimerin (formerly known as n-chimerin) and alpha2-chimerin are alternatively spliced products of a single gene, as are beta1- and beta2-chimerin. alpha1- and beta1-chimerin have a relatively short N-terminal region that does not encode any recognizable domains, whereas alpha2- and beta2-chimerin both include a functional SH2 domain that can bind to phosphotyrosine motifs within receptors. All of the isoforms contain a GAP domain with specificity in vitro for Rac1 and a diacylglycerol (DAG)-binding C1 domain which allows them to translocate to membranes in response to DAG signaling and anchors them in close proximity to activated Rac. Other C1 domain-containing diacylglycerol receptors including: PKC, Munc-13 proteins, phorbol ester binding scaffolding proteins involved in Ca2+-stimulated exocytosis, and RasGRPs, diacylglycerol-activated guanine-nucleotide exchange factors (GEFs) for Ras and Rap1. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 91

>gnl|CDD|212838 cd11905, SH3_Tec, Src Homology 3 domain of Tec (Tyrosine kinase expressed in hepatocellular carcinoma)

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           E V+A YDF   +P DL  +  +  +++ K++ HWW A++  G+ G IP  YV
Sbjct: 1   EIVVAMYDFQPTEPHDLRLETGEEYVILEKNDVHWWKARDKYGKEGYIPSNYV 53

Tec is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. It is more widely-expressed than other Tec subfamily kinases. Tec is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Tec is a key component of T-cell receptor (TCR) signaling, and is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 50.9 bits (122), Expect = 6e-09
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
           K +A YDF G  P DL F+K DI+ ++ K +    WWT + I G  G  P  YV+
Sbjct: 1   KAVALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGR-IGGREGIFPANYVE 54

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198186 cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src homology 2 (C-SH2) domain in Phospholipase C gamma

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 8  HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
          H+   W+   +TR++A+ +L+    +GAFLVR S T   ++ +  +   K+ H  I +  
Sbjct: 1  HESKEWFHANLTREQAEEMLMRVPRDGAFLVRPSETDPNSFAISFRAEGKIKHCRIKQ-- 58

Query: 68 NTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
            E +  + IG   F  L  L+++Y+ H L
Sbjct: 59 --EGRL-FVIGTSQFESLVELVSYYEKHPL 85

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +  AKY+F+ +   +L F+K D++ +  + +E+W+  + I G  G  PV YVQ
Sbjct: 1   EARAKYNFNADTGVELSFRKGDVITLTRRVDENWYEGR-IGGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           V A+YDF   DP  L F++ DI+ V+   + +WW  + ISG VG  P  YV 
Sbjct: 2   VQAQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGR-ISGRVGFFPRNYVH 52

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V+A + ++ + P+DL F+K D+++V+SK  E W   Q   G++G  P  +V+
Sbjct: 1   QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQ-CKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV-GSIPVPYVQ 164
           A YDF G+  ++L  KK+DI+ +V K++  WW A+ +     G +P  Y++
Sbjct: 4   ALYDFAGSVANELSLKKDDIVYIVQKEDNGWWLAKKLDESKEGWVPAAYLE 54

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|199831 cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain found in the Fyn-related kinase (Frk)

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          W+FG + R +A+  LL SE   GAFL+R+S +  G + L V +   V HY I ++   ++
Sbjct: 5  WFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGEFSLSVLDGGVVKHYRIRRL---DE 61

Query: 72 QTCYKIGDKTFSDLPSLLAFY 92
             +    KTFS L   + +Y
Sbjct: 62 GGFFLTRRKTFSTLNEFVNYY 82

Frk is a member of the Src non-receptor type tyrosine kinase family of proteins. The Frk subfamily is composed of Frk/Rak and Iyk/Bsk/Gst. It is expressed primarily epithelial cells. Frk is a nuclear protein and may function during G1 and S phase of the cell cycle and suppress growth. Unlike the other Src members it lacks a glycine at position 2 of SH4 which is important for addition of a myristic acid moiety that is involved in targeting Src PTKs to cellular membranes. FRK and SHB exert similar effects when overexpressed in rat phaeochromocytoma (PC12) and beta-cells, where both induce PC12 cell differentiation and beta-cell proliferation. Under conditions that cause beta-cell degeneration these proteins augment beta-cell apoptosis. The FRK-SHB responses involve FAK and insulin receptor substrates (IRS) -1 and -2. Frk has been demonstrated to interact with retinoblastoma protein. Frk regulates PTEN protein stability by phosphorylating PTEN, which in turn prevents PTEN degradation. Frk also plays a role in regulation of embryonal pancreatic beta cell formation. Frk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its activation loop. The tryosine involved is at the same site as the tyrosine involved in the autophosphorylation of Src. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198193 cd09940, SH2_Vav_family, Src homology 2 (SH2) domain found in the Vav family

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+ G M R  A+  L +  D G +LVR        Y L +K N  V H  I +       
Sbjct: 7  WFVGEMERDTAENRLENRPD-GTYLVRVRPQGETQYALSIKYNGDVKHMKIEQ----RSD 61

Query: 73 TCYKIGDKT-FSDLPSLLAFYKVHYL 97
            Y + +   F  L  L+ +Y+ + L
Sbjct: 62 GLYYLSESRHFKSLVELVNYYERNSL 87

Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 218 AYDKTALKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVE 260
           A D   L L  GD++K+ TK + NG W GE+NG+ G FP T+VE
Sbjct: 11  ARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVE 54

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198179 cd09925, SH2_SHC, Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          +      WY G M+R++A+++L   + +G FLVR+S T  G YVL   +N +  H ++
Sbjct: 2  EQLRGEPWYHGKMSRRDAESLL---QTDGDFLVRESTTTPGQYVLTGMQNGQPKHLLL 56

SHC is involved in a wide variety of pathways including regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. An adapter protein, SHC has been implicated in Ras activation following the stimulation of a number of different receptors, including growth factors [insulin, epidermal growth factor (EGF), nerve growth factor, and platelet derived growth factor (PDGF)], cytokines [interleukins 2, 3, and 5], erythropoietin, and granulocyte/macrophage colony-stimulating factor, and antigens [T-cell and B-cell receptors]. SHC has been shown to bind to tyrosine-phosphorylated receptors, and receptor stimulation leads to tyrosine phosphorylation of SHC. Upon phosphorylation, SHC interacts with another adapter protein, Grb2, which binds to the Ras GTP/GDP exchange factor mSOS which leads to Ras activation. SHC is composed of an N-terminal domain that interacts with proteins containing phosphorylated tyrosines, a (glycine/proline)-rich collagen-homology domain that contains the phosphorylated binding site, and a C-terminal SH2 domain. SH2 has been shown to interact with the tyrosine-phosphorylated receptors of EGF and PDGF and with the tyrosine-phosphorylated C chain of the T-cell receptor, providing one of the mechanisms of T-cell-mediated Ras activation. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           A Y +D  D D+L F + DI+ ++ +D   WWT + + G+ G  P  YV+K
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGR-LRGKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198271 cd10408, SH2_Nck1, Src homology 2 (SH2) domain found in Nck

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
          N WY+G +TR +A+  L    + G FL+RDS +   ++ + +K   K  H+ +       
Sbjct: 1  NPWYYGKVTRHQAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL----- 55

Query: 71 QQTCYKIGDKTFSDLPSLLAFYK 93
          ++  Y IG + FS +  L+  YK
Sbjct: 56 KECVYCIGQRKFSSMEELVEHYK 78

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198191 cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 13 WYFGMMTRQEAQAIL-LSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          +++G +TR+EA+  L L+   +G FL+R S   LG YVL V    K  HY I +  N
Sbjct: 3  FFYGSITREEAEEYLKLAGMSDGLFLLRQSLRSLGGYVLSVCHGRKFHHYTIERQLN 59

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the N-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198183 cd09929, SH2_BLNK_SLP-76, Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN--YVLCVKENNKVSHYIINKI 66
              WY G + R+EA+  L     +G FLVRDS+    +  Y L V  N+KV +  I  +
Sbjct: 9  LPKEWYAGNIDRKEAEEALRRSNKDGTFLVRDSSGKDSSQPYTLMVLYNDKVYNIQIRFL 68

Query: 67 TNTEQ 71
           NT Q
Sbjct: 69 ENTRQ 73

BLNK (also known as SLP-65 or BASH) is an important adaptor protein expressed in B-lineage cells. BLNK consists of a N-terminal sterile alpha motif (SAM) domain and a C-terminal SH2 domain. BLNK is a cytoplasmic protein, but a part of it is bound to the plasma membrane through an N-terminal leucine zipper motif and transiently bound to a cytoplasmic domain of Iga through its C-terminal SH2 domain upon B cell antigen receptor (BCR)-stimulation. A non-ITAM phosphotyrosine in Iga is necessary for the binding with the BLNK SH2 domain and/or for normal BLNK function in signaling and B cell activation. Upon phosphorylation BLNK binds Btk and PLCgamma2 through their SH2 domains and mediates PLCgamma2 activation by Btk. BLNK also binds other signaling molecules such as Vav, Grb2, Syk, and HPK1. BLNK has been shown to be necessary for BCR-mediated Ca2+ mobilization, for the activation of mitogen-activated protein kinases such as ERK, JNK, and p38 in a chicken B cell line DT40, and for activation of transcription factors such as NF-AT and NF-kappaB in human or mouse B cells. BLNK is involved in B cell development, B cell survival, activation, proliferation, and T-independent immune responses. BLNK is structurally homologous to SLP-76. SLP-76 and (linker for activation of T cells) LAT are adaptor/linker proteins in T cell antigen receptor activation and T cell development. BLNK interacts with many downstream signaling proteins that interact directly with both SLP-76 and LAT. New data suggest functional complementation of SLP-76 and LAT in T cell antigen receptor function with BLNK in BCR function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 121

>gnl|CDD|212901 cd11968, SH3_SASH3, Src homology 3 domain of Sam And SH3 Domain Containing Protein 3

 Score = 48.3 bits (115), Expect = 5e-08
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           ARV    +P+ YD  +LKL+ GDII++ +    G W G LN K G F F +V+
Sbjct: 3   ARVHTDFIPSPYDGDSLKLQKGDIIQIIEKPPVGTWTGLLNNKVGTFKFIYVD 55

SASH3, also called SLY/SLY1 (SH3-domain containing protein expressed in lymphocytes), is expressed exclusively in lymhocytes and is essential in the full activation of adaptive immunity. It is involved in the signaling of T cell receptors. It was the first described member of the SLY family of proteins, which are adaptor proteins containing a central conserved region with a bipartite nuclear localization signal (NLS) as well as SAM (sterile alpha motif) and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A  DF+ +D D+L F+KNDI+ ++S+ +EH W  + ++G  G  P  +V+
Sbjct: 4   ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVE 52

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|199832 cd10417, SH2_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 7 (SH2D7)

 Score = 49.1 bits (117), Expect = 7e-08
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 8/83 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+ G +TR++ +  LL +K  G+FL+R S+   G Y+L  + +++  H++IN+     + 
Sbjct: 9  WFHGFITRKQTEQ-LLRDKALGSFLIRLSDRATG-YILSYRGSDRCRHFVINQ----LRN 62

Query: 73 TCYKI-GDK-TFSDLPSLLAFYK 93
            Y I GD  + S L  L+  Y+
Sbjct: 63 RRYLISGDTSSHSTLAELVRHYQ 85

SH2D7 contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|212841 cd11908, SH3_ITK, Src Homology 3 domain of Interleukin-2-inducible T-cell Kinase

 Score = 48.1 bits (114), Expect = 7e-08
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           VIA YD+  NDP +L  + N+   ++   E HWW  Q+ +G  G +P  Y+
Sbjct: 3   VIALYDYQTNDPQELALRYNEEYHLLDSSEIHWWRVQDKNGHEGYVPSSYL 53

ITK (also known as Tsk or Emt) is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. ITK is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, ITK plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, ITK is crucial for the development of T-helper(Th)2 effector responses. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain found in p85

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 8  HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
          HD  +W  G + R +A+ +L   K +G FL+R+S+T  G Y   V  N +V H +I K
Sbjct: 3  HDERTWLVGDINRTQAEELLRG-KPDGTFLIRESST-QGCYACSVVCNGEVKHCVIYK 58

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and 2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, 2) p85 iSH2 domain with C2 domain of p110alpha, and 3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDIL-IVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           KV A YDFD     +L  +  ++L I      + W   +N  GEVG  P  YV+
Sbjct: 1   KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEVGLFPSSYVE 54

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212699 cd11765, SH3_Nck_1, First Src Homology 3 domain of Nck adaptor proteins

 Score = 47.4 bits (113), Expect = 9e-08
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           V+AKYD+      +L  KKN+ L ++  D +HWW  QN S + G +P  YV
Sbjct: 2   VVAKYDYTAQGDQELSIKKNEKLTLLD-DSKHWWKVQNSSNQTGYVPSNYV 51

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The first SH3 domain of Nck proteins preferentially binds the PxxDY sequence, which is present in the CD3e cytoplasmic tail. This binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 218 AYDKTALKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVE 260
           A D   L L+ GD++K+  K    G W GE+NG+ G FP T+VE
Sbjct: 10  ARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYV 163
           +AK+DF     D+L FKK  IL V++ ++  +W+ A+ + G+ G IP  Y+
Sbjct: 3   VAKHDFKATAEDELSFKKGSILKVLNMEDDPNWYKAE-LDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|198230 cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain found in Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog, Fgr

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG + R++A+  LLS  +  GAFL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5  WYFGKIGRKDAERQLLSPGNPRGAFLIRESETTKGAYSLSIRDWDQNRGDHVKHYKIRKL 64

Query: 67 TN 68
            
Sbjct: 65 DT 66

Fgr is a member of the Src non-receptor type tyrosine kinase family of proteins. The protein contains N-terminal sites for myristoylation and palmitoylation, a PTK domain, and SH2 and SH3 domains which are involved in mediating protein-protein interactions with phosphotyrosine-containing and proline-rich motifs, respectively. Fgr is expressed in B-cells and myeloid cells, localizes to plasma membrane ruffles, and functions as a negative regulator of cell migration and adhesion triggered by the beta-2 integrin signal transduction pathway. Multiple alternatively spliced variants, encoding the same protein, have been identified Fgr has been shown to interact with Wiskott-Aldrich syndrome protein. Fgr has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212796 cd11862, SH3_MPP, Src Homology 3 domain of Membrane Protein, Palmitoylated (or MAGUK p55 subfamily member) proteins

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 10/55 (18%)

Query: 115 AKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNI---SGEVGSIP 159
           A +D+D  +   +P       FKK DIL +V++D+ +WW A+ +   +G  G IP
Sbjct: 4   ALFDYDPEEDPLIPCKEAGLSFKKGDILQIVNQDDPNWWQARKVGDPNGRAGLIP 58

The MPP/p55 subfamily of MAGUK (membrane-associated guanylate kinase) proteins includes at least eight vertebrate members (MPP1-7 and CASK), four Drosophila proteins (Stardust, Varicose, CASK and Skiff), and other similar proteins; they all contain one each of the core of three domains characteristic of MAGUK proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, most members except for MPP1 contain N-terminal L27 domains and some also contain a Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. CASK has an additional calmodulin-dependent kinase (CaMK)-like domain at the N-terminus. Members of this subfamily are scaffolding proteins that play important roles in regulating and establishing cell polarity, cell adhesion, and synaptic targeting and transmission, among others. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212839 cd11906, SH3_BTK, Src Homology 3 domain of Bruton's tyrosine kinase

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           KV+A YD+   +  DL  +K +  +++ +    WW A++ +G  G IP  YV
Sbjct: 2   KVVALYDYTPMNAQDLQLRKGEEYVILEESNLPWWRARDKNGREGYIPSNYV 53

BTK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain with proline-rich and zinc-binding regions. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 219 YDKTALK-----LEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           YD TA K      + GDII VTK N +G +EG LNG TG FP  +VE
Sbjct: 6   YDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 216 PNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
            N  D+  L L+ GDII+V +   +G W GELNGK G FP T+VE
Sbjct: 10  ANREDE--LSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A Y+++G +P DL FKK DI+++  + +E+W+  +  +G+ G  P  YVQ
Sbjct: 4   ALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGE-CNGKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198178 cd09923, SH2_SOCS_family, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV 52
           WY+G +TR EA+  LL+ K  G FLVRDS+     Y+  V
Sbjct: 1  GWYWGGITRYEAEE-LLAGKPEGTFLVRDSSD--SRYLFSV 38

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +VI  YD+   + D+L F K  I+ V++K++  WW  + ++G+VG  P  YV+
Sbjct: 2   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-LNGQVGLFPSNYVK 53

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 112 KVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQ 164
           +  A Y +D +  DP++L F+K +IL V   D    WW A+  +GE G  P  Y+Q
Sbjct: 1   RARALYPYDASPDDPNELSFEKGEILEV--SDTSGKWWQARKSNGETGICPSNYLQ 54

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198229 cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain found in Yes

 Score = 47.7 bits (113), Expect = 3e-07
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG M R++A+ +LL+  +  G FLVR+S T  G Y L +++      + V HY I K+
Sbjct: 5  WYFGKMGRKDAERLLLNPGNQRGIFLVRESETTKGAYSLSIRDWDEVRGDNVKHYKIRKL 64

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           N      Y      F  L  L+  Y  H
Sbjct: 65 DNGGY---YITTRAQFDTLQKLVKHYTEH 90

Yes is a member of the Src non-receptor type tyrosine kinase family of proteins. Yes is the cellular homolog of the Yamaguchi sarcoma virus oncogene. In humans it is encoded by the YES1 gene which maps to chromosome 18 and is in close proximity to thymidylate synthase. A corresponding Yes pseudogene has been found on chromosome 22. YES1 has been shown to interact with Janus kinase 2, CTNND1,RPL10, and Occludin. Yes1 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198211 cd10348, SH2_Cterm_shark_like, C-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          W  G + R EA  IL  + D +G+FLVR S    G YVL +   N V H+ I        
Sbjct: 2  WLHGALDRNEAVEILKQKADADGSFLVRYSRRRPGGYVLTLVYENHVYHFEIQN----RD 57

Query: 72 QTCYKIGD-KTFSDLPSLLAFY 92
             + I D   F  L  L+  Y
Sbjct: 58 DKWFYIDDGPYFESLEHLIEHY 79

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in its carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 86

>gnl|CDD|198216 cd10353, SH2_Nterm_RasGAP, N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
          N WY G + R  A+  L      G++L+R+S+   G++VL       V+H+ I  +    
Sbjct: 19 NQWYHGRLDRTIAEERLRQAGKLGSYLIRESDRRPGSFVLSFLSRTGVNHFRIIAMCGD- 77

Query: 71 QQTCYKIGDKTFSDLPSLLAFY 92
              Y IG + FS L  L+ +Y
Sbjct: 78 ----YYIGGRRFSSLSDLIGYY 95

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general the longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the N-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           VIA+YDF  ++  DL  KK + L V+  D E WW A+++ +G+ G IP  YV
Sbjct: 2   VIAQYDFVPSNERDLQLKKGEKLQVLKSDGE-WWLAKSLTTGKEGYIPSNYV 52

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           K    YD+   + D+L   K D++ V+ K E+ WWT +  +G+ G +P  Y++K
Sbjct: 1   KYSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVER-NGQKGLVPGTYLEK 53

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198203 cd10340, SH2_N-SH2_SHP_like, N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+  +++  EA+ +L +   +G+FL R S +  G++ L V+  ++V+H    KI NT   
Sbjct: 2  WFHPVISGIEAENLLKTRGVDGSFLARPSKSNPGDFTLSVRRGDEVTHI---KIQNTGD- 57

Query: 73 TCYK-IGDKTFSDLPSLLAFY 92
            Y   G + F+ L  L+ +Y
Sbjct: 58 -YYDLYGGEKFATLSELVQYY 77

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [IVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|212756 cd11822, SH3_SASH_like, Src homology 3 domain of SAM And SH3 Domain Containing Proteins

 Score = 45.7 bits (108), Expect = 4e-07
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTH 258
           A+V     P+ YD  +LKL+ GDII +      G W G LN K G+F F +
Sbjct: 2   AKVHTDFTPSPYDTDSLKLKKGDIIDIINKPPMGIWTGMLNNKVGNFKFIY 52

This subfamily, also called the SLY family, is composed of SAM And SH3 Domain Containing Protein 1 (SASH1), SASH2, SASH3, and similar proteins. These are adaptor proteins containing a central conserved region with a bipartite nuclear localization signal (NLS) as wells as SAM (sterile alpha motif) and SH3 domains. SASH1 is a potential tumor suppressor in breast and colon cancer. It is widely expressed in normal tissues (except lymphocytes and dendritic cells) and is localized in the nucleus and the cytoplasm. SASH1 interacts with the oncoprotein cortactin and is important in cell migration and adhesion. SASH2 (also called SAMSN-1, SLY2, HACS1 or NASH1) and SASH3 (also called SLY/SLY1) are expressed mainly in hematopoietic cells, although SASH2 is also found in endothelial cells as well as myeloid leukemias and myeloma. SASH2 was found to be differentially expressed in malignant haematopoietic cells and in colorectal tumors, and is a potential tumor suppressor in lung cancer. SASH3 is essential in the full activation of adaptive immunity and is involved in the signaling of T cell receptors. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|198264 cd10401, SH2_C-SH2_Syk_like, C-terminal Src homology 2 (SH2) domain found in Spleen tyrosine kinase (Syk) proteins

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 6/56 (10%)

Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLV--RDSNTILGNYVLCVKENNKVSHYIINK 65
          W+ G ++R+E++ ILL   K NG FL+  RD+N   G+Y LC+  + KV HY I+K
Sbjct: 5  WFHGKISREESEQILLIGSKTNGKFLIRERDNN---GSYALCLLHDGKVLHYRIDK 57

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Syk. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW 146
           V+A YDF     + L FK  DI+ V++KD   WW
Sbjct: 2   VVALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWW 35

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 45.4 bits (107), Expect = 6e-07
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G  P  YV+
Sbjct: 2   QVIAMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGE-INGVTGLFPSNYVK 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           V+A YD+  N  D+L   + DI+ V+ KD ++WW    ++G+ G  P  YV
Sbjct: 2   VVALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|199830 cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 2A and 7 (SH2D2A and SH2D7)

 Score = 46.0 bits (109), Expect = 6e-07
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+ G +TR+EA+  LL  K  G +LVR S + +  +VL  +      H+++ ++ +    
Sbjct: 2  WFHGFITRREAER-LLEPKPQGCYLVRFSESAVT-FVLSYRSRTCCRHFLLAQLRD---- 55

Query: 73 TCYKI-GDKT-FSDLPSLLAFY 92
            + + G+ +  + L  LL  Y
Sbjct: 56 GRHVVLGEDSAHARLQDLLLHY 77

SH2D2A and SH7 both contain a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|198272 cd10409, SH2_Nck2, Src homology 2 (SH2) domain found in Nck

 Score = 46.2 bits (109), Expect = 7e-07
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY+G +TR +A+  L      G FL+RDS +   ++ + +K   K  H+ +  + N    
Sbjct: 3  WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKAVGKNKHFKVQLVDNV--- 59

Query: 73 TCYKIGDKTFSDLPSLLAFYK 93
            Y IG + F+ +  L+  YK
Sbjct: 60 --YCIGQRRFNSMDELVEHYK 78

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|212840 cd11907, SH3_TXK, Src Homology 3 domain of TXK, also called Resting lymphocyte kinase (Rlk)

 Score = 44.9 bits (106), Expect = 8e-07
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           +V A YDF   +P +L  K+ +  +++ + + HWW A++  G  G IP  YV
Sbjct: 2   QVKALYDFLPREPSNLALKRAEEYLILEQYDPHWWKARDRYGNEGLIPSNYV 53

TXK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal cysteine-rich region. Rlk is expressed in T-cells and mast cell lines, and is a key component of T-cell receptor (TCR) signaling. It is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198268 cd10405, SH2_Vav1, Src homology 2 (SH2) domain found in the Vav1 proteins

 Score = 46.2 bits (109), Expect = 9e-07
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G M R  A++IL +  D G +LVR        + + +K N +V H  I        +
Sbjct: 7  WYAGPMERAGAESILANRSD-GTYLVRQRVKDAAEFAISIKYNVEVKHIKI-----MTAE 60

Query: 73 TCYKIGD-KTFSDLPSLLAFYKVHYL 97
            Y+I + K F  L  L+ FY+ + L
Sbjct: 61 GLYRITEKKAFRGLTELVEFYQQNSL 86

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav1 plays a role in T-cell and B-cell development and activation. It has been identified as the specific binding partner of Nef proteins from HIV-1, resulting in morphological changes, cytoskeletal rearrangements, and the JNK/SAPK signaling cascade, leading to increased levels of viral transcription and replication. Vav1 has been shown to interact with Ku70, PLCG1, Lymphocyte cytosolic protein 2, Janus kinase 2, SIAH2, S100B, Abl gene, ARHGDIB, SHB, PIK3R1, PRKCQ, Grb2, MAPK1, Syk, Linker of activated T cells, Cbl gene and EZH2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A Y +  N  D+L  +  DI+ V  K ++ WW    ++G+ G  P  YV+
Sbjct: 4   ALYSYTANREDELSLQPGDIIEVHEKQDDGWWLG-ELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198277 cd10414, SH2_Grb14, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 14 (Grb14) proteins

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 8  HDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHY-IINK 65
          H    W+   ++R EAQ +++ +   +G FLVRDS +    +VL +    K+ H+ II  
Sbjct: 2  HRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPRTFVLSMSHGQKIKHFQIIPV 61

Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
            + E       G   F+DL  L+ FY+++
Sbjct: 62 EDDGELFHTLDDGHTRFTDLIQLVEFYQLN 91

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb14 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR) and weakly to the erbB2 receptor. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           A YD++   PD+L F++ D+L +  K + +WW A    G+ G IP  YV
Sbjct: 4   ALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKAT-CGGKTGLIPSNYV 51

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQNIS-GEVGSIPVPYVQ 164
           ++    YDFD    D+L  K+ D++ ++   +   WW  +N+S G+ G +P  Y++
Sbjct: 1   KRGKVLYDFDAQSDDELTVKEGDVVYILDDKKSKDWWMVENVSTGKEGVVPASYIE 56

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin while retaining the ability to bind proline-rich ligands; monoubiquitination of target proteins signals internalization and sorting through the endocytic pathway. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|198188 cd09934, SH2_Tec_family, Src homology 2 (SH2) domain found in Tec-like proteins

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV----KENNKVSHYIIN 64
          ++  WY G M+RQ A+++L  E   G F+VR+S+T  G Y + +      +  V HY I 
Sbjct: 4  EKYEWYVGDMSRQRAESLLKQEDKEGCFVVRNSST-KGLYTVSLFTKVPGSPHVKHYHIK 62

Query: 65 KITNTEQQTCYKIGDK-TFSDLPSLLAFYK 93
          +  N   +  + + +K  F  +P L+ +++
Sbjct: 63 Q--NARSE--FYLAEKHCFETIPELINYHQ 88

The Tec protein tyrosine kinase is the founding member of a family that includes Btk, Itk, Bmx, and Txk. The members have a PH domain, a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is involved in B-cell receptor signaling with mutations in Btk responsible for X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency (xid) in mice. Itk is involved in T-cell receptor signaling. Tec is expressed in both T and B cells, and is thought to function in activated and effector T lymphocytes to induce the expression of genes regulated by NFAT transcription factors. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 218 AYDKTALKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVE 260
           A D++ L L+ GDIIK+  K    G W GE+ G+ G FP  +VE
Sbjct: 10  ARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198276 cd10413, SH2_Grb7, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 8  HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
          H    W+ G ++R+E+Q ++  +   +G FLVR+S      +VL +    KV HY+I   
Sbjct: 2  HRTQPWFHGRISREESQRLIGQQGLVDGVFLVRESQRNPQGFVLSLCHLQKVKHYLILPS 61

Query: 67 TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH 95
             E +  + +  G   F+DL  L+ F++++
Sbjct: 62 -EEEGRLYFSMDDGQTRFTDLLQLVEFHQLN 91

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb7 is part of the Grb7 family of proteins which also includes Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    +DL FKK +   +++  E  WW A++I +G+ G IP  YV
Sbjct: 4   VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 54

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|213014 cd12081, SH3_CASK, Src Homology 3 domain of Calcium/calmodulin-dependent Serine protein Kinase

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 10/59 (16%)

Query: 113 VIAKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQ---NISGEVGSIPVP 161
           V A++++D    D +P       F+  DIL ++SKD+ +WW A+   + +G  G IP P
Sbjct: 2   VRAQFEYDPLKDDLIPCKQAGIRFRVGDILQIISKDDHNWWQAKLENSKNGTAGLIPSP 60

CASK is a scaffolding protein that is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. CASK interacts with many different binding partners including parkin, neurexin, syndecans, calcium channel proteins, caskin, among others, to perform specific functions in different subcellular locations. Disruption of the CASK gene in mice results in neonatal lethality while mutations in the human gene have been associated with X-linked mental retardation. Drosophila CASK is associated with both pre- and postsynaptic membranes and is crucial in synaptic transmission and vesicle cycling. CASK contains an N-terminal calmodulin-dependent kinase (CaMK)-like domain, two L27 domains, followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 20/37 (54%), Positives = 24/37 (64%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L  + GDII VT+    G WEG LNGKTG FP  +V+
Sbjct: 16  LSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198227 cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain found in Lyn

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          W+F  +TR++A+  LL+  ++ GAFL+R+S T+ G+Y L V++      + + HY I  +
Sbjct: 5  WFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSYSLSVRDYDPQHGDVIKHYKIRSL 64

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
           N       +I   TF  +  ++  Y+
Sbjct: 65 DNGGYYISPRI---TFPCISDMIKHYQ 88

Lyn is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in the hematopoietic cells, in neural tissues, liver, and adipose tissue. There are two alternatively spliced forms of Lyn. Lyn plays an inhibitory role in myeloid lineage proliferation. Following engagement of the B cell receptors, Lyn undergoes rapid phosphorylation and activation, triggering a cascade of signaling events mediated by Lyn phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the receptor proteins, and subsequent recruitment and activation of other kinases including Syk, phospholipase C2 (PLC2) and phosphatidyl inositol-3 kinase. These kinases play critical roles in proliferation, Ca2+ mobilization and cell differentiation. Lyn plays an essential role in the transmission of inhibitory signals through phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based inhibitory motifs (ITIM) in regulatory proteins such as CD22, PIR-B and FC RIIb1. Their ITIM phosphorylation subsequently leads to recruitment and activation of phosphatases such as SHIP-1 and SHP-1 which further down modulate signaling pathways, attenuate cell activation and can mediate tolerance. Lyn also plays a role in the insulin signaling pathway. Activated Lyn phosphorylates insulin receptor substrate 1 (IRS1) leading to an increase in translocation of Glut-4 to the cell membrane and increased glucose utilization. It is the primary Src family member involved in signaling downstream of the B cell receptor. Lyn plays an unusual, 2-fold role in B cell receptor signaling; it is essential for initiation of signaling but is also later involved in negative regulation of the signal. Lyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
            V AK++F+G + D+L F K DI+ V    E  WW    ++G+ G  P  YV
Sbjct: 1   LVRAKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEG-TLNGKTGWFPSNYV 51

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           V A YD++G + D+L FK  DIL  + +++E  W    + G VG  P  YV+
Sbjct: 2   VRALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLDGRVGLYPANYVE 53

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 216 PNAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVE 260
           P A D+ ALK   GD+I+V        G WEGELNG+ G FP   V 
Sbjct: 10  PVAPDELALK--KGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198281 cd10418, SH2_Src_Fyn_isoform_a_like, Src homology 2 (SH2) domain found in Fyn isoform a like proteins

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 67 TN 68
           N
Sbjct: 65 DN 66

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform a type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198221 cd10358, SH2_PTK6_Brk, Src homology 2 domain found in protein-tyrosine kinase-6 (PTK6) which is also known as breast tumor kinase (Brk)

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          W+FG ++R EA   L +E +  GAFL+R S     +YVL V++   V HY I +      
Sbjct: 4  WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63

Query: 72 QTCYKIGDKTFSDLPSLLAFYKVHYL 97
               +   +F  LP L+ +++   L
Sbjct: 64 HLNEAV---SFLSLPELVNYHRAQSL 86

Human protein-tyrosine kinase-6 (PTK6, also known as breast tumor kinase (Brk)) is a member of the non-receptor protein-tyrosine kinase family and is expressed in two-thirds of all breast tumors. PTK6 (9). PTK6 contains a SH3 domain, a SH2 domain, and catalytic domains. For the case of the non-receptor protein-tyrosine kinases, the SH2 domain is typically involved in negative regulation of kinase activity by binding to a phosphorylated tyrosine residue near to the C terminus. The C-terminal sequence of PTK6 (PTSpYENPT where pY is phosphotyrosine) is thought to be a self-ligand for the SH2 domain. The structure of the SH2 domain resembles other SH2 domains except for a centrally located four-stranded antiparallel beta-sheet (strands betaA, betaB, betaC, and betaD). There are also differences in the loop length which might be responsible for PTK6 ligand specificity. There are two possible means of regulation of PTK6: autoinhibitory with the phosphorylation of Tyr playing a role in its negative regulation and autophosphorylation at this site, though it has been shown that PTK6 might phosphorylate signal transduction-associated proteins Sam68 and signal transducing adaptor family member 2 (STAP/BKS) in vivo. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 115 AKYDFDGNDPD-DLPFKKNDILIVVSK-----DEEHWWTAQNISGEVGSIPVPYVQ 164
           A YDF   +P+ +L  KK DI+ V+SK      +  WW  +   G +G  P  YV+
Sbjct: 4   ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212900 cd11967, SH3_SASH1, Src homology 3 domain of SAM And SH3 Domain Containing Protein 1

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           ARV     P+ YD  +LKL+ GDII +      G W G LN K G F F +V+ +
Sbjct: 3   ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVL 57

SASH1 is a potential tumor suppressor in breast and colon cancer. Its decreased expression is associated with aggressive tumor growth, metastasis, and poor prognosis. It is widely expressed in normal tissues (except lymphocytes and dendritic cells) and is localized in the nucleus and the cytoplasm. SASH1 interacts with the oncoprotein cortactin and is important in cell migration and adhesion. It is a member of the SLY family of proteins, which are adaptor proteins containing a central conserved region with a bipartite nuclear localization signal (NLS) as well as SAM (sterile alpha motif) and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A Y ++G +P DL F K DI+I+  K +E+W+  + ++G  G +P  Y+Q
Sbjct: 5   ALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGE-LNGCHGFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198198 cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2 domain found in SH2 domain-containing adapter proteins B, D, E, and F (SHB, SHD, SHE, SHF)

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G +TR EA+++L   K+ G++LVR+S +   +Y L +K      H  I +  N   Q
Sbjct: 3  WYHGAITRIEAESLLRPCKE-GSYLVRNSESTKQDYSLSLKSAKGFMHMRIQR--NETGQ 59

Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYL 97
                 + F  +P ++  Y ++ L
Sbjct: 60 YILGQFSRPFETIPEMIRHYCLNKL 84

SHB, SHD, SHE, and SHF are SH2 domain-containing proteins that play various roles throughout the cell. SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. SHE is expressed in heart, lung, brain, and skeletal muscle, while expression of SHD is restricted to the brain. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVE 260
            A D   L  + GDII V + + +G W+G L  GK G FP  +VE
Sbjct: 12  TAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|198226 cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain found in HCK

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V++      + V HY   KI
Sbjct: 5  WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPQHGDTVKHY---KI 61

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
             +    Y     TFS L  L+  YK
Sbjct: 62 RTLDNGGFYISPRSTFSTLQELVDHYK 88

HCK is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in hemopoietic cells. HCK is proposed to couple the Fc receptor to the activation of the respiratory burst. It may also play a role in neutrophil migration and in the degranulation of neutrophils. It has two different translational starts that have different subcellular localization. HCK has been shown to interact with BCR gene, ELMO1 Cbl gene, RAS p21 protein activator 1, RASA3, Granulocyte colony-stimulating factor receptor, ADAM15 and RAPGEF1. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. HCK has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198231 cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain found in Fyn

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 67 TN 68
           N
Sbjct: 65 DN 66

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           IA Y ++ N+P DL F   D+++V  KD E WWT   I    G  P  YV+ 
Sbjct: 3   IALYPYESNEPGDLTFNAGDVILVTKKDGE-WWTG-TIGDRTGIFPSNYVRP 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           +A +D+ G    +L FK+ D+L++ SK    WW  +  +G  G IP  Y+
Sbjct: 5   VACFDYTGRTAQELSFKRGDVLLLHSKASSDWWRGE-HNGMRGLIPHKYI 53

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 42.8 bits (102), Expect = 4e-06
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
                +D+   DP++L  KK D++ V+ KD+  WW  +   G  G +P  YV++
Sbjct: 1   YGRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGER-GGRRGLVPSSYVEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           V A +DFD  +  +L F++ D + V+   + +WW      G+ G  P  YV 
Sbjct: 2   VQALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGA-CHGQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            A YD+   + +++ F + DI+  + + +E WW   N  G+ G  P  YV+
Sbjct: 3   KALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
           V A Y F+G  P DL F+  D + V+++ +    WW  + + G VG  P  YV 
Sbjct: 2   VTALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGR-LRGRVGIFPANYVS 54

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 19/37 (51%), Positives = 22/37 (59%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L L++GDII   K    G WEG LNGK G FP   V+
Sbjct: 16  LTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFVK 52

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVV-SKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YD+DG + D+L FK  D L  +  +DE+ W   +  SG+VG  P  YV+
Sbjct: 2   RVRALYDYDGQEQDELSFKAGDELTKLEDEDEQGWCKGRLDSGQVGLYPANYVE 55

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 215 VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
           +P   D+  L+L++GDII+V      G WEG LNGKTG FP
Sbjct: 9   LPQNEDE--LELKVGDIIEVVGEVEEGWWEGVLNGKTGMFP 47

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198282 cd10419, SH2_Src_Fyn_isoform_b_like, Src homology 2 (SH2) domain found in Fyn isoform b like proteins

 Score = 43.9 bits (103), Expect = 5e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 67 TN 68
           N
Sbjct: 65 DN 66

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform b type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3 proteins

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G M R +A+  L++ + N  +LVR      G Y + +K NN+V H     I    + 
Sbjct: 7  WYAGAMERLQAETELIN-RVNSTYLVRHRTKESGEYAISIKYNNEVKH-----IKILTRD 60

Query: 73 TCYKIGD-KTFSDLPSLLAFYKVHYL 97
            + I + + F  L  L+ +YK H L
Sbjct: 61 GFFHIAENRKFKSLMELVEYYKHHSL 86

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav3 preferentially activates RhoA, RhoG and, to a lesser extent, Rac1. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. VAV3 has been shown to interact with Grb2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198260 cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain found in Tec protein, Bruton's tyrosine kinase (Btk)

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 12/95 (12%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVS 59
          D  +   WY   MTR +A+ +L  E   G F+VRDS +  G Y + V           + 
Sbjct: 1  DSLEMYEWYSKNMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSAGDPQGVIR 59

Query: 60 HYIINKITNTEQQTCYKIGDK-TFSDLPSLLAFYK 93
          HY++     +  Q+ Y + +K  FS +P L+ +++
Sbjct: 60 HYVV----CSTPQSQYYLAEKHLFSTIPELINYHQ 90

A member of the Tec protein tyrosine kinase Btk is expressed in bone marrow, spleen, all hematopoietic cells except T lymphocytes and plasma cells where it plays a crucial role in B cell maturation and mast cell activation. Btk has been shown to interact with GNAQ, PLCG2, protein kinase D1, B-cell linker, SH3BP5, caveolin 1, ARID3A, and GTF2I. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is implicated in the primary immunodeficiency disease X-linked agammaglobulinemia (Bruton's agammaglobulinemia). The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. Two tyrosine phosphorylation (pY) sites have been identified in Btk: one located in the activation loop of the catalytic domain which regulates the transition between open (active) and closed (inactive) states and the other in its SH3 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198207 cd10344, SH2_SLAP, Src homology 2 domain found in Src-like adaptor proteins

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 11 NSWYFGMMTRQEAQAIL-LSEKDNGAFLVRDSNTILGNYVLCVK-----ENNKVSHYIIN 64
          + W F  ++R++A+ +L L     G+FL+R+S T  G Y L V+       + V HY I 
Sbjct: 10 HGWLFEGLSREKAEELLMLPGNQVGSFLIRESETRRGCYSLSVRHRGSQSRDSVKHYRIF 69

Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFY 92
          ++ N      Y     TF  L  ++  Y
Sbjct: 70 RLDNG---WFYISPRLTFQCLEDMVNHY 94

SLAP belongs to the subfamily of adapter proteins that negatively regulate cellular signaling initiated by tyrosine kinases. It has a myristylated N-terminus, SH3 and SH2 domains with high homology to Src family tyrosine kinases, and a unique C-terminal tail, which is important for c-Cbl binding. SLAP negatively regulates platelet-derived growth factor (PDGF)-induced mitogenesis in fibroblasts and regulates F-actin assembly for dorsal ruffles formation. c-Cbl mediated SLAP inhibition towards actin remodeling. Moreover, SLAP enhanced PDGF-induced c-Cbl phosphorylation by SFK. In contrast, SLAP mitogenic inhibition was not mediated by c-Cbl, but it rather involved a competitive mechanism with SFK for PDGF-receptor (PDGFR) association and mitogenic signaling. Accordingly, phosphorylation of the Src mitogenic substrates Stat3 and Shc were reduced by SLAP. Thus, we concluded that SLAP regulates PDGFR signaling by two independent mechanisms: a competitive mechanism for PDGF-induced Src mitogenic signaling and a non-competitive mechanism for dorsal ruffles formation mediated by c-Cbl. SLAP is a hematopoietic adaptor containing Src homology (SH)3 and SH2 motifs and a unique carboxy terminus. Unlike c-Src, SLAP lacks a tyrosine kinase domain. Unlike c-Src, SLAP does not impact resorptive function of mature osteoclasts but induces their early apoptosis. SLAP negatively regulates differentiation of osteoclasts and proliferation of their precursors. Conversely, SLAP decreases osteoclast death by inhibiting activation of caspase 3. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|212888 cd11955, SH3_srGAP1-3, Src homology 3 domain of Slit-Robo GTPase Activating Proteins 1, 2, and 3

 Score = 42.2 bits (99), Expect = 7e-06
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           IAK+D+ G    +L FKK   L++  +  + WW  ++ +G  G +P  Y+
Sbjct: 3   IAKFDYVGRSARELSFKKGASLLLYHRASDDWWEGRH-NGIDGLVPHQYI 51

srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of central nervous system tissues. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIP 159
           V A +D++  + D+L F++ D L V+ K   DE  WW A+  + + G +P
Sbjct: 3   VYALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARL-NDKEGYVP 51

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 42.3 bits (99), Expect = 7e-06
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YD+ G + D+L FK  + L+ +  +DE+ W   + +SG +G  P  YV+
Sbjct: 3   RVRALYDYTGQEADELSFKAGEELLKIGEEDEQGWCKGRLLSGRIGLYPANYVE 56

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L+L++GD I+V      G WEG+LNGK G FP   V+
Sbjct: 16  LELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212698 cd11764, SH3_Eps8, Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
           V   YDF   +  +L   K + L V+  D   WW  +N  G+VG +P
Sbjct: 2   VRVLYDFTARNSKELSVLKGEYLEVLD-DSRQWWKVRNSRGQVGYVP 47

This group is composed of Eps8 and Eps8-like proteins including Eps8-like 1-3, among others. These proteins contain N-terminal Phosphotyrosine-binding (PTB), central SH3, and C-terminal effector domains. Eps8 binds either Abi1 (also called E3b1) or Rab5 GTPase activating protein RN-tre through its SH3 domain. With Abi1 and Sos1, it becomes part of a trimeric complex that is required to activate Rac. Together with RN-tre, it inhibits the internalization of EGFR. The SH3 domains of Eps8 and similar proteins recognize peptides containing a PxxDY motif, instead of the classical PxxP motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A YDF+  +  +L FK+ DI+ + ++ +E+W+    ++G+ G  PV YV+
Sbjct: 5   ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM-VNGQSGFFPVNYVE 53

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212800 cd11866, SH3_SKAP1-like, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYV 163
             +D  GN+PD+L FK+ D++ ++SK  D   WW  + ++G+VG +P  Y+
Sbjct: 4   GLWDCSGNEPDELSFKRGDLIYIISKEYDSFGWWVGE-LNGKVGLVPKDYL 53

This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212844 cd11911, SH3_CIP4-like, Src Homology 3 domain of Cdc42-Interacting Protein 4

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWT-AQNISGEVGSIPVPYVQ 164
              A YDFDG     L  ++ +IL+V+ +D    WT  +  +G+ G +P  Y++
Sbjct: 1   TCTALYDFDGTSEGTLSMEEGEILLVLEEDGGDGWTRVRKNNGDEGYVPTSYIE 54

This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. It functions downstream of Cdc42 in PDGF-dependent actin reorganization and cell migration, and also regulates the activity of PDGFRbeta. It uses Src as a substrate in regulating the invasiveness of breast tumor cells. CIP4 may also play a role in the pathogenesis of Huntington's disease. Members of this subfamily typically contain an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. The SH3 domain of CIP4 associates with Gapex-5, a Rab31 GEF. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212812 cd11879, SH3_Bem1p_2, Second Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQ 164
           I  YDF    PD+L  K  D +I+ +     W+ A+ I   G  G IPV +V+
Sbjct: 3   IVLYDFKAERPDELDAKAGDAIIICAHSNYEWFVAKPIGRLGGPGLIPVSFVE 55

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
            A++D+ G    +L FKK D L +  +  + WW  Q ++G+ G +P  Y+
Sbjct: 3   TAQFDYTGRSERELSFKKGDSLTLYRQVSDDWWRGQ-LNGQDGLVPHKYI 51

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198195 cd09942, SH2_nSH2_p85_like, N-terminal Src homology 2 (nSH2) domain found in p85

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK--ENNKV 58
          WY+G ++R+E    +  +  +G FLVRD++T+ G+Y L ++   NNK+
Sbjct: 9  WYWGDISREEVNEKM-RDTPDGTFLVRDASTMKGDYTLTLRKGGNNKL 55

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, an internal SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and (2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, (2) p85 iSH2 domain with C2 domain of p110alpha, and (3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 110

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE---VGSIPVPY 162
           +V A YD   ++ D+L F + +I++V  ++++ WW    I G+    G  PV +
Sbjct: 1   RVRALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGH-IEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 114 IAKYDFDGNDPDD---LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
            A YDF+  D D+   L FKK D++ V+ + +E+W   + +  ++G  P+ +
Sbjct: 3   KALYDFEMKDEDEKDCLTFKKGDVITVIRRVDENWAEGR-LGDKIGIFPISF 53

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYVQ 164
           A +D+D    D+L  ++   + V+SKD     +E WWT + I  +VG  P  YV 
Sbjct: 4   ALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGK-IGDKVGIFPSNYVA 57

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 214 RVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGK-----TGHFPFTHVE 260
           +V   +  TA   L L +G ++ V K + +G WEGEL  +      G FP  +V+
Sbjct: 3   QVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVK 57

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine Kinase

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 6/56 (10%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISG-EVGSIPVPYVQK 165
           V+A Y +DG   DDL FKK + L V+   EEH  WW A++++  + G IP  YV K
Sbjct: 2   VVALYPYDGIHEDDLSFKKGEKLKVI---EEHGEWWKARSLTTKKEGFIPSNYVAK 54

Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
            +A  DF   D   L F+  D L+V+ K    WW A   +G  G IP  ++ +
Sbjct: 2   YVAIADFVATDDSQLSFESGDKLLVLRKPSVDWWWA-EHNGCCGYIPASHLHQ 53

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTH 258
           L  + GDII V + + +G WEGELN G+ G FP  +
Sbjct: 16  LSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           KV+A YD+  +  D+L F++ DI+ V  K+++ W+    ++G  G  P  YV+
Sbjct: 1   KVVALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGV-LNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|198263 cd10400, SH2_SAP1a, Src homology 2 (SH2) domain found in SLAM-associated protein (SAP) 1a

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 14  YFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNT---E 70
           Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV     V  Y +++ T T    
Sbjct: 6   YHGKISRETGEKLLLAAGLDGSYLLRDSESVPGVYCLCVLYKGYVYTYRVSQ-TETGSWS 64

Query: 71  QQTCYKIGDKTFSDLPSLL-AFYKVHYLDTSPLIKPATK 108
            +T   +  + F  + +L+ AF K      +PL  P  K
Sbjct: 65  AETAPGVHKRLFRKVKNLISAFQKPDQGIVTPLQYPVEK 103

The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A Y+++G +P DL F K DI+I+  + +E+W+  + ++G  G  P  +VQ
Sbjct: 5   ALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGE-VNGIHGFFPTNFVQ 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           KV A YDF+  + ++L FK  +I+ V+   + +WW   N  GE G  P  +V  
Sbjct: 2   KVRALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGE-GLFPANFVTA 54

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198278 cd10415, SH2_Grb10, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 10 (Grb10) proteins

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 8  HDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
          H    W+ G ++R+E+  I+  +   +G FL+RDS +    +VL +  + K+ ++ I   
Sbjct: 2  HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61

Query: 67 TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH 95
           + + QT + +  G+  FSDL  L+ FY+++
Sbjct: 62 ED-DGQTFFSLDDGNTKFSDLIQLVDFYQLN 91

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb10 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198181 cd09927, SH2_Tensin_like, Src homology 2 domain found in Tensin-like proteins

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK 53
          WY   ++R +A A LL +K  G FLVRDS T  G Y L VK
Sbjct: 5  WYKPNISRDQAIA-LLKDKPPGTFLVRDSTTYKGAYGLAVK 44

SH2 domain found in Tensin-like proteins. The Tensins are a family of intracellular proteins that interact with receptor tyrosine kinases (RTKs), integrins, and actin. They are thought act as signaling bridges between the extracellular space and the cytoskeleton. There are four homologues: Tensin1, Tensin2 (TENC1, C1-TEN), Tensin3 and Tensin4 (cten), all of which contain a C-terminal tandem SH2-PTB domain pairing, as well as actin-binding regions that may localize them to focal adhesions. The isoforms of Tensin2 and Tensin3 contain N-terminal C1 domains, which are atypical and not expected to bind to phorbol esters. Tensins 1-3 contain a phosphatase (PTPase) and C2 domain pairing which resembles PTEN (phosphatase and tensin homologue deleted on chromosome 10) protein. PTEN is a lipid phosphatase that dephosphorylates phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) to yield phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). As PtdIns(3,4,5)P3 is the product of phosphatidylinositol 3-kinase (PI3K) activity, PTEN is therefore a key negative regulator of the PI3K pathway. Because of their PTEN-like domains, the Tensins may also possess phosphoinositide-binding or phosphatase capabilities. However, only Tensin2 and Tensin3 have the potential to be phosphatases since only their PTPase domains contain a cysteine residue that is essential for catalytic activity. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 116

>gnl|CDD|198254 cd10391, SH2_SHE, Src homology 2 domain found in SH2 domain-containing adapter protein E (SHE)

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 14/94 (14%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN--- 68
            WY G ++R EA++ L   K+  ++LVR+S +    Y + +K +    H I+ +  +   
Sbjct: 2   PWYHGSISRAEAESRLQPCKE-ASYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDNKY 60

Query: 69  TEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPL 102
           T  QT        F  +P +     VHY     L
Sbjct: 61  TLNQTS-----AVFDSIPEV-----VHYYSNEKL 84

SHE is expressed in heart, lung, brain, and skeletal muscle. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           GDII V  ++    W+GEL G+ G FP  +V+
Sbjct: 21  GDIITVLDSSDPDWWKGELRGRVGIFPANYVQ 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           A D   L    GDII++ K + +G W G L GK G FP  +VE
Sbjct: 10  AQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYVE 52

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +VI ++D+D  +PD+L  K  DI+  V K EE WW    ++G+ G  P  +V+ 
Sbjct: 1   EVIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGT-LNGKRGMFPDNFVKV 53

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
           +A YD++     DL FKK + L +V+  E  WW A +++ G+ G IP  YV
Sbjct: 3   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 53

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 4   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198205 cd10342, SH2_SAP1, Src homology 2 (SH2) domain found in SLAM-associated protein (SAP)1

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++     + 
Sbjct: 5  VYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQ----TET 60

Query: 73 TCYKI 77
            +  
Sbjct: 61 GSWSA 65

The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198265 cd10402, SH2_C-SH2_Zap70, C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70)

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 8  HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
          H+R  WY G + R EA+  L S  + +G FL+R+     G Y L +     V HY I++
Sbjct: 7  HERMPWYHGSIARDEAERRLYSGAQPDGKFLLRERKE-SGTYALSLVYGKTVYHYRIDQ 64

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 105

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTA------QNISGEVGSIPVPY 162
           A YD++    D+L  +++DIL ++ K ++ WW         +    VG +P  Y
Sbjct: 4   ALYDYEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine Kinase

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 165
           V+A Y ++ +   DL F+K + L ++ +  E WW AQ++ +G+ G IP  +V K
Sbjct: 2   VVALYSYEPSHDGDLGFEKGEKLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 54

Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
           L  E G++I+V +    G WEGE +G  G FP ++V
Sbjct: 17  LSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           GDII VT+    G WEG LNGKTG FP  +V 
Sbjct: 23  GDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
             + K++++    D+L  +K D ++V+ K  + WW  +   G+VG  P  YV +
Sbjct: 1   PAVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECN-GQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           A YDF      +L FKK D + ++ K +++W+  ++  G VG  P+ YV+K
Sbjct: 5   AVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEH-HGRVGIFPISYVEK 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V+A + ++   P+DL F++ D + V+S+  E W    +  G VG  P  +V 
Sbjct: 1   QVVALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHS-DGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YD+ G +PD+L FK  + L+ V  +DE+ W       G VG  P  YV+
Sbjct: 3   RVRAVYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKGVTDGGAVGLYPANYVE 56

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212742 cd11808, SH3_Alpha_Spectrin, Src homology 3 domain of Alpha Spectrin

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
            V+A YD+    P ++  KK DIL +++   + WW  +  +   G +P  YV+K
Sbjct: 1   CVVALYDYQEKSPREVSMKKGDILTLLNSSNKDWWKVEV-NDRQGFVPAAYVKK 53

Spectrin is a major structural component of the red blood cell membrane skeleton and is important in erythropoiesis and membrane biogenesis. It is a flexible, rope-like molecule composed of two subunits, alpha and beta, which consist of many spectrin-type repeats. Alpha and beta spectrin associate to form heterodimers and tetramers; spectrin tetramer formation is critical for red cell shape and deformability. Defects in alpha spectrin have been associated with inherited hemolytic anemias including hereditary spherocytosis (HSp), hereditary elliptocytosis (HE), and hereditary pyropoikilocytosis (HPP). Alpha spectrin contains a middle SH3 domain and a C-terminal EF-hand binding motif in addition to multiple spectrin repeats. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212795 cd11861, SH3_DLG-like, Src Homology 3 domain of Disks large homolog proteins

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 10/57 (17%)

Query: 113 VIAKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNIS-----GEVGSIP 159
           V A +D+D +    LP     FK  DIL V +  ++ WW A+ ++      EVG IP
Sbjct: 2   VRALFDYDPSRDSGLPSQGLSFKFGDILHVTNASDDEWWQARRVTPNGEEEEVGVIP 58

The DLG-like proteins are scaffolding proteins that cluster at synapses and are also called PSD (postsynaptic density)-95 proteins or SAPs (synapse-associated proteins). They play important roles in synaptic development and plasticity, cell polarity, migration and proliferation. They are members of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG-like proteins contain three PDZ domains and varying N-terminal regions. All DLG proteins exist as alternatively-spliced isoforms. Vertebrates contain four DLG proteins from different genes, called DLG1-4. DLG4 and DLG2 are found predominantly at postsynaptic sites and they mediate surface ion channel and receptor clustering. DLG3 is found axons and some presynaptic terminals. DLG1 interacts with AMPA-type glutamate receptors and is critical in their maturation and delivery to synapses. The SH3 domain of DLG4 binds and clusters the kainate subgroup of glutamate receptors via two proline-rich sequences in their C-terminal tail. It also binds AKAP79/150 (A-kinase anchoring protein). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|198259 cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain found in Tec protein, IL2-inducible T-cell kinase (Itk)

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYI 62
          D+  WY   + R +A+ +L  E   G F+VRDS+   G Y + +      + N  + HY 
Sbjct: 4  DQYEWYNKNINRSKAEKLLRDEGKEGGFMVRDSSQP-GLYTVSLYTKAGGEGNPCIRHYH 62

Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
          I K TN   +  Y      F+ +P L+ ++K
Sbjct: 63 I-KETNDSPKKYYLAEKHVFNSIPELIEYHK 92

A member of the Tec protein tyrosine kinase Itk is expressed thymus, spleen, lymph node, T lymphocytes, NK and mast cells. It plays a role in T-cell proliferation and differentiation, analogous to Tec family kinases Txk. Itk has been shown to interact with Fyn, Wiskott-Aldrich syndrome protein, KHDRBS1, PLCG1, Lymphocyte cytosolic protein 2, Linker of activated T cells, Karyopherin alpha 2, Grb2, and Peptidylprolyl isomerase A. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 163
           A +D++ +  D+L  ++ D + V+SKD     +E WWT + I+  VG  P  YV
Sbjct: 4   AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGK-INDRVGIFPSNYV 56

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 224 LKLEIGDIIKV-TKTNIN-GQWEGELNGKTGHFPFTHVE 260
           L L  GDI+ + +K   + G W+GELNGK G FP   VE
Sbjct: 16  LTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVE 54

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 17/36 (47%), Positives = 21/36 (58%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
           L    GD+I VT+    G WEG  NG+TG FP  +V
Sbjct: 16  LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 164
           +A Y F   + D+LPF+K DIL +++ +D+++W+ A+ + G  G IP  Y++
Sbjct: 3   VALYSFQATESDELPFQKGDILKILNMEDDQNWYKAE-LQGREGYIPKNYIK 53

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
            K+DF  +  D+L FKK D+L ++S D+   W    ++GE G +P  +V
Sbjct: 4   GKFDFTASGEDELSFKKGDVLKILSSDDI--WFKAELNGEEGYVPKNFV 50

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           V A YDF+  + D+L F   D++ V+      WW  + + G++G  P  YV
Sbjct: 2   VRALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGR-LHGKLGLFPANYV 51

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           K  A Y F      +L  KK DI+ +  + +++W+  ++ +G VG  P  YV+
Sbjct: 1   KARALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEH-NGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198273 cd10410, SH2_SH2B1, Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3)

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 7  PHDRNSWYFGMMTRQEAQAILLS--EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
          P     W+ GM++R +A  ++L      +G FLVR S T  G YVL      K  H    
Sbjct: 4  PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGEYVLTFNFQGKAKHL--- 60

Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
          +++  E+  C ++    F  +  +L  ++VH
Sbjct: 61 RLSLNEEGQC-RVQHLWFQSIFDMLEHFRVH 90

SH2B1 (SH2-B, PSM), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198251 cd10388, SH2_SOCS7, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           WY+G M+ ++A+ +L ++ D G+FLVRDS+     + L  +    V H
Sbjct: 11 GWYWGPMSWEDAEKVLSNKPD-GSFLVRDSSDDRYIFSLSFRSQGSVHH 58

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +  A YD+   D  ++ F   DI+  + + +E WW      G  G  P  YV+
Sbjct: 1   RARALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYVE 53

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           KV A YDF+  + ++L FK  +I+IV+   + +WW  +N  G VG  P  +V
Sbjct: 3   KVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG-VGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|198250 cd10387, SH2_SOCS6, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDS 41
          +  WY+G +TR EA+  L +  D G+FLVRDS
Sbjct: 9  KQGWYWGPITRWEAEGKLANVPD-GSFLVRDS 39

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198214 cd10351, SH2_SH2D4B, Src homology 2 domain found in the SH2 domain containing protein 4B (SH2D4B)

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
          W+ G+++R+EA+A LL     G+FLVR S  I G Y L  +  +   H++++
Sbjct: 9  WFHGIISREEAEA-LLMNATEGSFLVRVSEKIWG-YTLSYRLQSGFKHFLVD 58

SH2D4B contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|213005 cd12072, SH3_FNBP1L, Src Homology 3 domain of Formin Binding Protein 1-Like

 Score = 39.6 bits (92), Expect = 7e-05
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWT-AQNISGEVGSIPVPYVQ 164
           A Y FDG++   L  K+ ++L ++ +D+   WT A+  +GE G +P  Y++
Sbjct: 5   ALYPFDGSNEGTLAMKEGEVLYIIEEDKGDGWTRARKQNGEEGYVPTSYIE 55

FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. The SH3 domain of the related protein, CIP4, associates with Gapex-5, a Rab31 GEF. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 39.6 bits (92), Expect = 7e-05
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +A Y ++ N+  DL F++ D+++V  KD + WWT   +  + G  P  YV+
Sbjct: 3   VAMYTYESNEQGDLTFQQGDVILVTKKDGD-WWTG-TVGDKTGVFPSNYVR 51

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 165
            A+YDF   D  +L  K+ D++ + +K  ++ WW  + I+G +G  P  YV++
Sbjct: 3   KARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGE-INGRIGWFPSTYVEE 54

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           A+YDF   D  +L  K+ DI+ +++K  +  W    I G VG  P  YV++
Sbjct: 4   ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVEE 54

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 229 GDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFI 262
           GDII +T   I+  W EG +NG++G FP  +VE +
Sbjct: 22  GDIITLT-NQIDENWYEGMVNGQSGFFPVNYVEVL 55

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198261 cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain found in Tec protein, Txk

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK------VSHYIINKI 66
          WY   +TR +A+ +L  E   GAF+VRDS   LG+Y + V    +      + HY I K 
Sbjct: 8  WYHKNITRNQAERLLRQESKEGAFIVRDSRH-LGSYTISVFTRARRSTEASIKHYQIKK- 65

Query: 67 TNTEQQTCYKIGDK-TFSDLPSLLAFYK 93
           N   Q  + + ++  F  +P L+ +++
Sbjct: 66 -NDSGQ--WYVAERHLFQSIPELIQYHQ 90

A member of the Tec protein tyrosine kinase Txk is expressed in thymus, spleen, lymph node, T lymphocytes, NK cells, mast cell lines, and myeloid cell line. Txk plays a role in TCR signal transduction, T cell development, and selection which is analogous to the function of Itk. Txk has been shown to interact with IFN-gamma. Unlike most of the Tec family members Txk lacks a PH domain. Instead Txk has a unique region containing a palmitoylated cysteine string which has a similar membrane tethering function as the PH domain. Txk also has a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP and crucial to the function of the PH domain. It is not present in Txk which is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|212995 cd12062, SH3_Caskin1, Src Homology 3 domain of CASK interacting protein 1

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 6/52 (11%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL------NGKTGHFPFTHVEFI 262
           N YD T+L ++ GD+I V + + +G+W+G +      N + G+FP + VE I
Sbjct: 11  NNYDLTSLNIKAGDVITVLEQHPDGRWKGCIHDNRTGNDRVGYFPSSLVEAI 62

Caskin1 is a multidomain adaptor protein that contains six ankyrin repeats, a single SH3 domain, tandem sterile alpha motif (SAM) domains, and a long disordered proline-rich region. It is expressed at high levels in the brain and is localized in presynaptic regions. It binds to the multidomain scaffolding protein CASK through the CaMK domain in competition with Munc-interacting protein 1 (Mint1). CASK participates in one of two evolutionarily conserved tripartite complexes containing either Mint1 and Velis or Caskin1 and Velis. Caskin1 may play a role in infantile myoclonic epilepsy. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 62

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           AK+DF      +LP +K DI+ +  + +++W+  ++  G VG  P  Y++
Sbjct: 5   AKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEH-HGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212968 cd12035, SH3_MPP1-like, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)-like proteins

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 12/60 (20%)

Query: 113 VIAKYDFDGNDPDDL--------PFKKNDILIVVSKDEEHWWTAQNISGE---VGSIPVP 161
           V A++D+D +  DDL         FK  DIL ++SKD+ +WW A+         G IP P
Sbjct: 2   VRAQFDYDPSK-DDLIPCQQAGIAFKTGDILQIISKDDHNWWQARKPGASKEPAGLIPSP 60

This subfamily includes MPP1, CASK (Calcium/calmodulin-dependent Serine protein Kinase), Caenorhabditis elegans lin-2, and similar proteins. MPP1 and CASK are scaffolding proteins from the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). In addition, they also have the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. CASK and lin-2 also contain an N-terminal calmodulin-dependent kinase (CaMK)-like domain and two L27 domains. MPP1 is ubiquitously-expressed and plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. CASK is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212798 cd11864, SH3_PEX13_eumet, Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEH----WWTAQNISGEVGSIPVPYVQ 164
            A+YDF     D+L F+  D L +  K+ +     W  A     ++G +P  YV+
Sbjct: 3   RAEYDFVAESEDELSFRAGDKLRLAPKELQPRVRGWLLATVDGQKIGLVPANYVK 57

PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|198225 cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain in lymphocyte cell kinase (Lck)

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 9/86 (10%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
          W+F  ++R +A+  LL+  + +G+FL+R+S T  G++ L V++ ++     V HY   KI
Sbjct: 5  WFFKNLSRNDAERQLLAPGNTHGSFLIRESETTAGSFSLSVRDFDQNQGEVVKHY---KI 61

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
           N +    Y     TF  L  L+  Y
Sbjct: 62 RNLDNGGFYISPRITFPGLHELVRHY 87

Lck is a member of the Src non-receptor type tyrosine kinase family of proteins. It is expressed in the brain, T-cells, and NK cells. The unique domain of Lck mediates its interaction with two T-cell surface molecules, CD4 and CD8. It associates with their cytoplasmic tails on CD4 T helper cells and CD8 cytotoxic T cells to assist signaling from the T cell receptor (TCR) complex. When the T cell receptor is engaged by the specific antigen presented by MHC, Lck phosphorylase the intracellular chains of the CD3 and zeta-chains of the TCR complex, allowing ZAP-70 to bind them. Lck then phosphorylates and activates ZAP-70, which in turn phosphorylates Linker of Activated T cells (LAT), a transmembrane protein that serves as a docking site for proteins including: Shc-Grb2-SOS, PI3K, and phospholipase C (PLC). The tyrosine phosphorylation cascade culminates in the intracellular mobilization of a calcium ions and activation of important signaling cascades within the lymphocyte, including the Ras-MEK-ERK pathway, which goes on to activate certain transcription factors such as NFAT, NF-kappaB, and AP-1. These transcription factors regulate the production cytokines such as Interleukin-2 that promote long-term proliferation and differentiation of the activated lymphocytes. The N-terminal tail of Lck is myristoylated and palmitoylated and it tethers the protein to the plasma membrane of the cell. Lck also contains a SH3 domain, a SH2 domain, and a C-terminal tyrosine kinase domain. Lck has 2 phosphorylation sites, the first an autophosphorylation site that is linked to activation of the protein and the second which is phosphorylated by Csk, which inhibits it. Lck is also inhibited by SHP-1 dephosphorylation and by Cbl ubiquitin ligase, which is part of the ubiquitin-mediated pathway. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212695 cd11761, SH3_FCHSD_1, First Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 117 YDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 165
           Y ++   PD+L   + + L V+   D + W  A+N SGEVG +P  Y+Q 
Sbjct: 8   YSYEAQRPDELTITEGEELEVIEDGDGDGWVKARNKSGEVGYVPENYLQF 57

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +A YD+   D D++ F  +DI+  +   +E WW      G+ G  P  YV+
Sbjct: 3   VALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGV-CRGKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           V AK++F   + D+L F K D++ V   +E  WW     +G  G  P  YV++
Sbjct: 2   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEG-THNGRTGWFPSNYVRE 53

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212832 cd11899, SH3_Nck2_1, First Src Homology 3 domain of Nck2 adaptor protein

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           VIAK+D+      +L  KKN+ L ++  D + WW  +N +   G +P  YV++
Sbjct: 6   VIAKWDYTAQQDQELDIKKNERLWLLD-DSKTWWRVRNAANRTGYVPSNYVER 57

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck2 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           +EKV+A YD+  +  D+L F++  I+ V+ K+++ W+    ++G  G  P  YV+   
Sbjct: 2   LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV-MNGVTGLFPGNYVESIM 58

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 215 VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           VP   D+  L+L++GDII + +    G W G LNGK+G FP   V+
Sbjct: 10  VPQNEDE--LELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
            +A YDF G   +DL F++ D ++V    +  W   + ++G  G  P  +
Sbjct: 2   AVALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGR-LNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212837 cd11904, SH3_Nck1_3, Third Src Homology 3 domain of Nck1 adaptor protein

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYV 163
           V A Y F  ++ ++L F+K +++ V+ K E    WW  +  +G+VG +P  YV
Sbjct: 3   VQALYPFSSSNDEELNFEKGEVMDVIEKPENDPEWWKCRKANGQVGLVPKNYV 55

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212886 cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of Apoptosis Stimulating of p53 protein 2

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIP 159
           V A +D++G   D+L FK+ D + ++ +   DE  WW A+    E G +P
Sbjct: 3   VYALWDYEGESDDELSFKEGDCMTILRREDEDETEWWWARLNDKE-GYVP 51

ASPP2 is the full length form of the previously-identified tumor supressor, p53-binding protein 2 (p53BP2). ASPP2 activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). It plays a central role in regulating apoptosis and cell growth; ASPP2-deficient mice show postnatal death. Downregulated expression of ASPP2 is frequently found in breast tumors, lung cancer, and diffuse large B-cell lymphoma where it is correlated with a poor clinical outcome. ASPP2 contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP2 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212830 cd11897, SH3_SNX18, Src Homology 3 domain of Sorting nexin 18

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 164
           A YDF   +P ++  +++++L + S +D E W    N  G+ G  P  YV+
Sbjct: 4   ALYDFRSENPGEISLREHEVLSLCSEQDIEGWLEGVNSRGDRGLFPASYVE 54

SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. It binds FIP5 and is required for apical lumen formation. It may also play a role in axonal elongation. SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX18 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPF 256
           A +   L  E+GD I++  T  +G  EGEL G+ G FP 
Sbjct: 10  ALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFPH 48

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           +A++DF+G   D+L F + D++ +     E W   + ++G++G  P+ +V
Sbjct: 3   VARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKGE-LNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
              A Y +     + L F K DI+ V+ + E  WW  +   GE G  P  YV+
Sbjct: 1   TATALYPWRAKKENHLSFAKGDIITVLEQQEM-WWFGELEGGEEGWFPKSYVK 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 218 AYDKTALKLEIGDIIKVTKT--NINGQWEGELNGKTGHFPFTHVE 260
           A D   L L  GD++++        G W+GE NG+ G FP T+VE
Sbjct: 11  ARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 55

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG--EVGSIPVPYVQ 164
           +A+Y F G+   +L F+K + + ++ K  E+W+  + I+G    G  P  YVQ
Sbjct: 4   VAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGR-ITGTGRQGIFPASYVQ 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
              A +D    DP++L FK  D++ V+   ++ WW    I  E G  P  +V+
Sbjct: 1   LAEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGS-IRDEEGWFPASFVR 52

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212978 cd12045, SH3_SKAP2, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 2

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYV 163
           +D  G+ PD+L FK+ D + ++SK+     WW  + + G +G +P  Y+
Sbjct: 6   WDCTGDQPDELSFKRGDTIYILSKEYNRFGWWVGE-MKGTIGLVPKAYI 53

SKAP2, also called SKAP55-Related (SKAP55R) or SKAP55 homolog (SKAP-HOM or SKAP55-HOM), is an immune cell-specific adaptor protein that plays an important role in adhesion and migration of B-cells and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), YopH, SHPS1, and HPK1. SKAP2 has also been identified as a substrate for lymphoid-specific tyrosine phosphatase (Lyp), which has been implicated in a wide variety of autoimmune diseases. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. Like SKAP1, SKAP2 is expected to bind primarily to a proline-rich region of ADAP through its SH3 domain; its degradation may be regulated by ADAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198285 cd10718, SH2_CIS, Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI-- 66
            + WY+G +T  EA   L  +   G FLVRDS+       L VK     ++  I     
Sbjct: 2  RESGWYWGSITASEAHQALQ-KAPEGTFLVRDSSHPSYMLTLSVKTTRGPTNVRIEYSDG 60

Query: 67 -----TNTEQQTCYKIGDKTFSDLPSLLAFY 92
               +++  +        +F D+ SL+  Y
Sbjct: 61 SFRLDSSSLARPRL----LSFPDVVSLVQHY 87

CIS family members are known to be cytokine-inducible negative regulators of cytokine signaling. The expression of the CIS gene can be induced by IL2, IL3, GM-CSF and EPO in hematopoietic cells. Proteasome-mediated degradation of this protein has been shown to be involved in the inactivation of the erythropoietin receptor. Suppressor of cytokine signalling (SOCS) was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 88

>gnl|CDD|212863 cd11930, SH3_SH3RF1_2, Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 7/54 (12%)

Query: 115 AKYDFDGNDP----DDLPFKKNDILIVVSKDEEHWWTAQNISGE-VGSIPVPYV 163
           A YDF+  D     D LPF K+DIL V+ + +E+W  A+ + G+ +G  P+ YV
Sbjct: 4   ALYDFEVKDKEADKDCLPFAKDDILTVIRRVDENW--AEGMLGDKIGIFPISYV 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212899 cd11966, SH3_ASAP2, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 2

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV---GSIPVPYVQ 164
           +V A Y+   ++PD+L F + +I+IV  ++++ WW   +I GE    G+ PV +V 
Sbjct: 1   RVKALYNCVADNPDELTFSEGEIIIVDGEEDKEWWIG-HIDGEPTRRGAFPVSFVH 55

ASAP2 is also called DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. It mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and it binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212813 cd11880, SH3_Caskin, Src Homology 3 domain of CASK interacting protein

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL------NGKTGHFPFTHVE 260
           N +D TAL +  GDII V + + +G+W+G +      N + G+FP + VE
Sbjct: 11  NNHDLTALNVRAGDIITVLEQHPDGRWKGHIHDNQTGNDRVGYFPPSLVE 60

Caskin proteins are multidomain adaptor proteins that contain six ankyrin repeats, a single SH3 domain, tandem sterile alpha motif (SAM) domains, and a long disordered proline-rich region. There are two Caskin proteins called Caskin1 and Caskin2. Caskin1 binds to the multidomain scaffolding protein CASK through the CaM domain in competition with Munc-interacting protein 1 (Mint1). CASK participates in one of two evolutionarily conserved tripartite complexes containing either Mint1 and Velis or Caskin1 and Velis. Caskin1 may play a role in infantile myoclonic epilepsy. There is not much known about Caskin2; despite sharing a domain architecture with Caskin1, Caskin2 does not bind CASK. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 61

>gnl|CDD|212833 cd11900, SH3_Nck1_1, First Src Homology 3 domain of Nck1 adaptor protein

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           V+AK+D+      +L  KKN+ L ++  D + WW  +N   + G +P  YV++
Sbjct: 5   VVAKFDYVAQQDQELDIKKNERLWLLD-DSKSWWRVRNAMNKTGFVPSNYVER 56

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck1 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           IA+YDF   D  +L   K D++ + +K   + W    ++G VG  P  YV++
Sbjct: 4   IARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVEE 55

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 212 QVRVPNAYDKT---ALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEF 261
           QV+  +AY       L LE GD++ V +   +G +EGE   +G+ G FP ++ E 
Sbjct: 1   QVQCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTEE 55

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           KV A YDF+  + ++L FK  DI+ ++   + +WW  +   G  G  P  +V
Sbjct: 2   KVRAIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQG-TGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
           L + +GDII   K +  G WEGE+ G+ G FP
Sbjct: 16  LTITVGDIITKIKKDDGGWWEGEIKGRRGLFP 47

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 165
           +  A YD+   D D++ F++ D++I V   ++ W       +G+ G +P  YV+ 
Sbjct: 1   RYRAMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQRTGQSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 36.7 bits (85), Expect = 7e-04
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +A YD+ G   D++ F   + +  +   +E WW      G  G  P  YV+
Sbjct: 4   VALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGT-CHGHRGLFPANYVE 53

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212996 cd12063, SH3_Caskin2, Src Homology 3 domain of CASK interacting protein 2

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELN------GKTGHFPFTHVEFI 262
           N +D TAL +  GD+I V + + +G+W+G ++       + G+FP + VE I
Sbjct: 11  NLHDPTALNVRAGDVITVLEQHPDGRWKGHIHDSQRGTDRVGYFPPSIVEVI 62

Caskin2 is a multidomain adaptor protein that contains six ankyrin repeats, a single SH3 domain, tandem sterile alpha motif (SAM) domains, and a long disordered proline-rich region. It shares a domain architecture with Caskin1, but does not bind CASK. The function of Caskin2 is still unknown. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 62

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 229 GDIIKVTKTNIN----GQWEGELNGKTGHFPFTHVE 260
           G II++ + + N    G WEGE NG+ G FP   VE
Sbjct: 21  GAIIRILRKDDNGVDDGWWEGEFNGRVGVFPSLVVE 56

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212972 cd12039, SH3_MPP3, Src Homology 3 domain of Membrane Protein, Palmitoylated 3 (or MAGUK p55 subfamily member 3)

 Score = 36.9 bits (85), Expect = 8e-04
 Identities = 14/25 (56%), Positives = 19/25 (76%)

Query: 127 LPFKKNDILIVVSKDEEHWWTAQNI 151
           LPFK+ DIL VVS+D+  WW A+ +
Sbjct: 23  LPFKRRDILEVVSQDDPTWWQAKRV 47

MPP3 is a scaffolding protein that colocalizes with MPP5 and CRB1 at the subdpical region adjacent to adherens junctions and may function in photoreceptor polarity. It interacts with some nectins and regulates their trafficking and processing. Nectins are cell-cell adhesion proteins involved in the establishment apical-basal polarity at cell adhesion sites. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L L  GD + V + + +G W GE NG+ G FP  +V 
Sbjct: 16  LSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVT 52

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +  A Y     D  +L F+   I+  V   +E  W    ++G  G IP  YV+
Sbjct: 1   RARALYACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYVE 53

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 218 AYDKTALKLEIGDIIK-VTKTNINGQWEGELNGKTGHFPFTHVEF 261
           A D++ L  E G II  V  ++  G  EG LNG+TG  P  +VEF
Sbjct: 10  AEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYVEF 54

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|198234 cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain found in B lymphoid kinase (Blk)

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVK----ENNKVSHYIINKIT 67
          W+F  ++R++A+  LL+  +  G+FL+R+S +  G + L VK    +   V HY   KI 
Sbjct: 5  WFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDVTTQGEVVKHY---KIR 61

Query: 68 NTEQQTCYKIGDKTFSDLPSLLAFY 92
          + +    Y     TF  L +L+  Y
Sbjct: 62 SLDNGGYYISPRITFPTLQALVQHY 86

Blk is a member of the Src non-receptor type tyrosine kinase family of proteins. Blk is expressed in the B-cells. Unlike most other Src members Blk lacks cysteine residues in the SH4 domain that undergo palmitylation. Blk is required for the development of IL-17-producing gamma-delta T cells. Furthermore, Blk is expressed in lymphoid precursors and, in this capacity, plays a role in regulating thymus cellularity during ontogeny. Blk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|212977 cd12044, SH3_SKAP1, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYV 163
           +D  G++PD+L F++ D++ ++SK+     WW  + ++G VG +P  Y+
Sbjct: 6   WDCFGDNPDELSFQRGDLIYILSKEYNMYGWWVGE-LNGIVGIVPKDYL 53

SKAP1, also called SKAP55 (Src kinase-associated protein of 55kDa), is an immune cell-specific adaptor protein that plays an important role in T-cell adhesion, migration, and integrin clustering. It is expressed exclusively in T-lymphocytes, mast cells, and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), Fyn, Riam, RapL, and RasGRP. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPY 162
           V A +D+    PD+L FK+ D++ V+ KD     WW A ++ G  G +P  Y
Sbjct: 3   VYALWDYSAEFPDELSFKEGDMVTVLRKDGEGTDWWWA-SLCGREGYVPRNY 53

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           IA Y +  ++P DL F + + ++V  KD E WWT   I    G  P  YV+
Sbjct: 3   IALYPYSSSEPGDLTFNEGEEILVTQKDGE-WWTGS-IEDRTGIFPSNYVR 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|198262 cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain found in Tec protein, Bmx

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNY---VLCVKENNK---VSHYI 62
          D   W+ G ++R +++ +L  +   GAF+VR+S+ + G Y   +     N+K   V HY 
Sbjct: 4  DAYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQV-GMYTVSLFSKAVNDKKGTVKHYH 62

Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
          ++  TN E +  Y   +  F  +P L+ +++
Sbjct: 63 VH--TNAENKL-YLAENYCFDSIPKLIHYHQ 90

A member of the Tec protein tyrosine kinase Bmx is expressed in the endothelium of large arteries, fetal endocardium, adult endocardium of the left ventricle, bone marrow, lung, testis, granulocytes, myeloid cell lines, and prostate cell lines. Bmx is involved in the regulation of Rho and serum response factor (SRF). Bmx has been shown to interact with PAK1, PTK2, PTPN21, and RUFY1. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains. It is not present in Txk and the type 1 splice form of the Drosophila homolog. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +A Y F   + +DL  +  D + ++    E WW  + I   VG  P  +VQ+
Sbjct: 3   VALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGK-IEDRVGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVE 260
           L+L+ GDI+ V K   +G ++G L   GKTG FP + VE
Sbjct: 16  LELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVE 54

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 207 FARVKQVRVPNAYDKTALKLEIGDIIKV-TKTNINGQ----WEGEL-NGKTGHFPFTHVE 260
           F R      P    +  L L+ GDI+ V +KT+  G+    W+G   +G+ G FP  +VE
Sbjct: 1   FCRALYDFTPEN-PEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 224 LKLEIGDIIKV-TKTNI-NGQWEGELNGKTGHFPFTHV 259
           L  + GD I V T+T+     WEG L G+ G FP  +V
Sbjct: 16  LSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           V A+++F   + D+L   K DI+ V   +E  WW    ++G+ G  P  YV++ 
Sbjct: 4   VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEG-TLNGKTGWFPSNYVREI 56

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIP 159
           +D++  + D+L  ++ DI+ ++SKD E   WW  + ++G+ G  P
Sbjct: 6   FDYEAENEDELTLREGDIVTILSKDCEDKGWWKGE-LNGKRGVFP 49

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 218 AYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 260
           A     L L+ GDII + +  I+  W EGE NG+ G FP ++VE
Sbjct: 10  AQSAKELSLKKGDIIYIRR-QIDKNWYEGEHNGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           L  + G II V K N +G +EG +NG TG FP  +VE I
Sbjct: 19  LSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 57

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 10/52 (19%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +A  D++    D++  ++ +++ V+ K++  WW  +    + G +P  Y++ 
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVR-KGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 217 NAYDKTALKLEIGDIIK-VTKTNINGQWEGELNGKTGHFP 255
           +A  +  L + +G+II+ V K    G  EGELNG+ G FP
Sbjct: 9   DAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFP 48

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like proteins

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---WWTAQN-ISGEVGSIPVPY 162
           +I  +DF+    D+L  K  D + ++  DEE    W+  +N  +GE G  PV +
Sbjct: 2   LIVIHDFNARSEDELTLKPGDKIELIEDDEEFGDGWYLGRNLRTGETGLFPVVF 55

This subfamily includes the Saccharomyces cerevisiae proteins BOI1 and BOI2, and similar proteins. They contain an N-terminal SH3 domain, a Sterile alpha motif (SAM), and a Pleckstrin homology (PH) domain at the C-terminus. BOI1 and BOI2 interact with the SH3 domain of Bem1p, a protein involved in bud formation. They promote polarized cell growth and participates in the NoCut signaling pathway, which is involved in the control of cytokinesis. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A  ++ G++P DL F K D++++  + +E+W+  + I+G  G  P   V+
Sbjct: 5   ALCNYRGHNPGDLKFNKGDVILLRRQLDENWYLGE-INGVSGIFPASSVE 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212967 cd12034, SH3_MPP4, Src Homology 3 domain of Membrane Protein, Palmitoylated 4 (or MAGUK p55 subfamily member 4)

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 127 LPFKKNDILIVVSKDEEHWWTAQNIS 152
           LPF+K DIL +V +++  WW A+ +S
Sbjct: 23  LPFRKGDILQIVDQNDSLWWQARKLS 48

MPP4, also called Disks Large homolog 6 (DLG6) or Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 5 protein (ALS2CR5), is a retina-specific scaffolding protein that plays a role in organizing presynaptic protein complexes in the photoreceptor synapse, where it localizes to the plasma membrane. It is required in the proper localization of calcium ATPases and for maintenance of calcium homeostasis. MPP4 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQK 165
           A Y F+  +PD++ F+  DI+ V      E  W A  + G+ G  P  YV+K
Sbjct: 4   ALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVEK 55

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEV--GSIPVPYVQK 165
           KV A Y ++ +  DDL F    ++ V  +++  W+  + +  +G    G  P  +V+ 
Sbjct: 3   KVKALYPYESDHEDDLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNFVEV 60

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 6/54 (11%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 163
           A YD++ +  D+L  ++ D++ V+S+D     ++ WW  + I   +G  P  YV
Sbjct: 4   ALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGK-IRHRLGIFPANYV 56

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|198252 cd10389, SH2_SHB, Src homology 2 domain found in SH2 domain-containing adapter protein B (SHB)

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G ++R +A+ +L   K+  ++LVR+S T   +Y L +K N    H    K+  T+++
Sbjct: 3  WYHGAISRGDAENLLRLCKE-CSYLVRNSQTSKHDYSLSLKSNQGFMHM---KLAKTKEK 58

Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYL 97
                   F  +P ++ +Y    L
Sbjct: 59 YVLGQNSPPFDSVPEVIHYYTTRKL 83

SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
            A ++  L  + GDII V   +    W GELNG+TG FP  +VE
Sbjct: 9   TAQNEDELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYVQK 165
           +A+Y+F   D  +L  ++ D++ + S+   ++ WW  +  +G +G  P  YV++
Sbjct: 4   VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGET-NGRIGWFPSTYVEE 56

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|198209 cd10346, SH2_SH2B_family, Src homology 2 (SH2) domain found in SH2B adapter protein family

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 13 WYFGMMTRQEA-QAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
          W+ G ++R +A Q +L S  D +G FLVR S T  G +VL      +  H    ++T  E
Sbjct: 10 WFHGTLSRSDAAQLVLHSGADGHGVFLVRQSETRRGEFVLTFNFQGRAKHL---RLTLNE 66

Query: 71 QQTC 74
          +  C
Sbjct: 67 KGQC 70

The SH2B adapter protein family has 3 members: SH2B1 (SH2-B, PSM), SH2B2 (APS), and SH2B3 (Lnk). SH2B family members contain a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. SH2B3 negatively regulates lymphopoiesis and early hematopoiesis. The lnk-deficiency results in enhanced production of B cells, and expansion as well as enhanced function of hematopoietic stem cells (HSCs), demonstrating negative regulatory functions of Sh2b3/Lnk in cytokine signaling. Sh2b3/Lnk also functions in responses controlled by cell adhesion and in crosstalk between integrin- and cytokine-mediated signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           V A YD+    PD+L F K+ I+  V K++  WW       +    P  YV++
Sbjct: 2   VKALYDYRAQRPDELSFCKHAIITNVEKEDGGWWRGDYGGKKQKWFPANYVEE 54

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +++A++D+    P+DL F + D + ++S+  + W    +  G +G  P  +  +
Sbjct: 1   RMVAQHDYSAQGPEDLEFSQGDTIDILSEVNQEWLEG-HCDGRIGIFPKCFAVR 53

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212691 cd11757, SH3_SH3BP4, Src Homology 3 domain of SH3 domain-binding protein 4

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V+A  D+   +   L F K D L V+      WW A N + E+G IP  YVQ
Sbjct: 1   EVVAIKDYCPTNFTTLKFSKGDHLYVLDTSGGEWWYAHNTT-EMGYIPSSYVQ 52

SH3 domain-binding protein 4 (SH3BP4) is also called transferrin receptor trafficking protein (TTP). SH3BP4 is an endocytic accessory protein that interacts with endocytic proteins including clathrin and dynamin, and regulates the internalization of the transferrin receptor (TfR). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212818 cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNI-SGEVGSIPVPYV 163
              AK DF+G +P +L F++ D + ++        W+  ++  SG VG +P  + 
Sbjct: 1   SCTAKMDFEGVEPGELSFRQGDSIEIIGDLIPGLQWFVGRSKSSGRVGFVPTNHF 55

This subfamily is composed of vertebrate SH3TC proteins and hypothetical fungal proteins containing BAR and SH3 domains. Mammals contain two SH3TC proteins, SH3TC1 and SH3TC2. The function of SH3TC1 is unknown. SH3TC2 is localized in Schwann cells in the peripheral nervous system, where it interacts with Rab11 and plays a role in peripheral nerve myelination. Mutations in SH3TC2 are associated with Charcot-Marie-Tooth disease type 4C, a severe hereditary peripheral neuropathy with symptoms that include progressive scoliosis, delayed age of walking, muscular atrophy, distal weakness, and reduced nerve conduction velocity. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 224 LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVE 260
           L  + GDII + K   + N  W G + G+ G FP  +VE
Sbjct: 16  LAFQKGDIITILKKSDSQNDWWTGRIGGREGIFPANYVE 54

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212969 cd12036, SH3_MPP5, Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 13/46 (28%)

Query: 113 VIAKYDFDGNDPDD----------LPFKKNDILIVVSKDEEHWWTA 148
           V A +D+D   P+D          L F+K DIL V+S+++ +WW A
Sbjct: 2   VRAHFDYD---PEDDPYIPCRELGLSFQKGDILHVISQEDPNWWQA 44

MPP5, also called PALS1 (Protein associated with Lin7) or Nagie oko protein in zebrafish or Stardust in Drosophila, is a scaffolding protein which associates with Crumbs homolog 1 (CRB1), CRB2, or CRB3 through its PDZ domain and with PALS1-associated tight junction protein (PATJ) or multi-PDZ domain protein 1 (MUPP1) through its L27 domain. The resulting tri-protein complexes are core proteins of the Crumb complex, which localizes at tight junctions or subapical regions, and is involved in the maintenance of apical-basal polarity in epithelial cells and the morphogenesis and function of photoreceptor cells. MPP5 is critical for the proper stratification of the retina and is also expressed in T lymphocytes where it is important for TCR-mediated activation of NFkB. Drosophila Stardust exists in several isoforms, some of which show opposing functions in photoreceptor cells, which suggests that the relative ratio of different Crumbs complexes regulates photoreceptor homeostasis. MPP5 contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 34.5 bits (79), Expect = 0.004
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 218 AYDKTALKLEIGDIIKV-TKTNIN-GQWEGELNGKTGHFPFTHVEFI 262
           A ++  L ++ GDI+ + +K  I+ G WEGELNG+ G FP   V+ +
Sbjct: 10  AQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFVKLL 56

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW--TAQNISGEVGSIPVPYVQ 164
           A YD+   D D++ FK  D ++ V   +E W   T Q  +G+ G +P  YV+
Sbjct: 6   AMYDYRAADDDEVSFKDGDTIVNVQTIDEGWMYGTVQR-TGKTGMLPANYVE 56

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 34.5 bits (79), Expect = 0.004
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +A Y F   + +DLP +  D ++VV    E WW  +     VG  P  +VQ+
Sbjct: 3   VALYKFLPQENNDLPLQPGDRVMVVDDSNEDWWKGK-SGDRVGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG4792|consensus	293		100.0
KOG1264|consensus	1267		99.96
KOG1264|consensus	1267		99.95
KOG2996|consensus	865		99.94
KOG4226|consensus	379		99.87
KOG4226|consensus	379		99.85
smart00252	84	SH2 Src homology 2 domains. Src homology 2 domains	99.85
cd00173	94	SH2 Src homology 2 domains; Signal transduction, i	99.85
KOG4348|consensus	627		99.85
PF00017	77	SH2: SH2 domain; InterPro: IPR000980 The Src homol	99.84
KOG3601|consensus	222		99.82
KOG1029|consensus	1118		99.79
KOG4225|consensus	489		99.77
KOG4348|consensus	627		99.75
KOG4278|consensus	1157		99.71
KOG1029|consensus	1118		99.7
KOG4637|consensus	464		99.66
KOG0790|consensus	600		99.66
KOG0197|consensus	468		99.55
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.49
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.4
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.37
KOG4637|consensus	464		99.35
KOG1930|consensus	483		99.35
KOG2070|consensus	661		99.29
KOG2996|consensus	865		99.26
KOG0194|consensus	474		99.23
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.22
KOG3632|consensus	1335		99.14
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.12
KOG0790|consensus	600		99.11
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.07
KOG3601|consensus	222		99.07
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.05
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.02
KOG2199|consensus	462		99.01
KOG2070|consensus	661		98.97
KOG1118|consensus	366		98.94
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	98.92
KOG0162|consensus	1106		98.91
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.89
KOG4225|consensus	489		98.89
KOG2199|consensus	462		98.85
KOG1118|consensus	366		98.59
KOG2546|consensus	483		98.55
KOG3751|consensus	622		98.54
KOG2856|consensus	472		98.51
KOG0162|consensus	1106		98.51
KOG4792|consensus	293		98.37
KOG2856|consensus	472		98.21
KOG2546|consensus	483		98.13
KOG0515|consensus	752		98.11
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	98.1
KOG3655|consensus	484		98.08
KOG3875|consensus	362		98.04
KOG3697|consensus	345		98.01
KOG1702|consensus	264		97.98
KOG0515|consensus	752		97.92
KOG1843|consensus	473		97.89
KOG3875|consensus	362		97.86
KOG1702|consensus	264		97.84
KOG3655|consensus	484		97.78
KOG4773|consensus	386		97.76
KOG2222|consensus	848		97.75
KOG3523|consensus	695		97.75
KOG3632|consensus	1335		97.7
KOG4278|consensus	1157		97.69
KOG1843|consensus	473		97.65
KOG4575|consensus	874		97.51
KOG2528|consensus	490		97.37
KOG3725|consensus	375		97.28
KOG4566|consensus	258		97.28
KOG3557|consensus	721		97.23
KOG3523|consensus	695		97.06
KOG4773|consensus	386		96.84
KOG3557|consensus	721		96.79
KOG4429|consensus	421		96.79
KOG2222|consensus	848		96.75
KOG2528|consensus	490		96.61
KOG3771|consensus	460		96.42
KOG1856|consensus	1299		96.35
KOG1451|consensus	812		96.31
KOG0609|consensus	542		96.25
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	96.19
KOG0609|consensus	542		96.16
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	96.12
KOG3775|consensus	482		96.1
KOG0197|consensus	468		96.0
KOG3775|consensus	482		95.41
KOG1451|consensus	812		95.07
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	94.94
KOG4575|consensus	874		94.6
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	94.26
KOG3725|consensus	375		93.87
KOG4429|consensus	421		93.69
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	93.42
KOG0199|consensus	1039		93.31
smart00287	63	SH3b Bacterial SH3 domain homologues.	93.23
KOG1856|consensus	1299		92.83
KOG3771|consensus	460		92.82
KOG3565|consensus	640		92.62
COG3103	205	SH3 domain protein [Signal transduction mechanisms	92.36
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	92.33
KOG0199|consensus	1039		91.76
KOG3812|consensus	475		91.43
smart00287	63	SH3b Bacterial SH3 domain homologues.	90.86
PRK10884	206	SH3 domain-containing protein; Provisional	89.52
PRK10884	206	SH3 domain-containing protein; Provisional	87.94
PF02762	86	Cbl_N3: CBL proto-oncogene N-terminus, SH2-like do	87.81
KOG4384|consensus	361		85.49
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	85.22
KOG0040|consensus	2399		80.99

>KOG4792|consensus

Probab=100.00  E-value=2e-46  Score=302.94  Aligned_cols=268  Identities=54%  Similarity=0.917  Sum_probs=223.8

Q ss_pred             CCCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcc---eEEee
Q psy5076           1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ---TCYKI   77 (288)
Q Consensus         1 ~~~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~---~~~~~   77 (288)
                      |+.+||+.+...||+|.|||++|.++|+..+. |.||||+|++.+|+|+|||+.+..|-||.|........+   ..|.|
T Consensus         1 ~~~~FD~~er~swYfg~mSRqeA~~lL~~~r~-G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rI   79 (293)
T KOG4792|consen    1 MAGNFDSSERSSWYFGPMSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRI   79 (293)
T ss_pred             CCCccChhhccceecCcccHHHHHHHhcCcce-eeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeee
Confidence            68899999999999999999999999998886 999999999999999999999999999999984332211   13999


Q ss_pred             CCcccCChhhhhhhheecccCCCccccccccee------------eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCe
Q psy5076          78 GDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTI------------EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHW  145 (288)
Q Consensus        78 ~~~~F~sl~~LV~~y~~~~l~~~~l~~p~~~~~------------~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~w  145 (288)
                      ++..|++|+.|++||+.+-|+.+.|+.|++++.            ..++++|+|.+.+..+|.|++|+++.++++.+..|
T Consensus        80 gdQ~Fd~lPaLL~fykihyLdtttLi~p~~r~~~~~~~~~~~~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqW  159 (293)
T KOG4792|consen   80 GDQEFDSLPALLEFYKIHYLDTTTLIEPAKRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQW  159 (293)
T ss_pred             ccccccchHHHHhheeEeeeccccccccccccccccCcccchhhhhheeeeeccCCCccccCCcccCcEEEEecCcHHHh
Confidence            999999999999999999999889999988752            24678999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCeEecccCCc-cccc-----ccCCCCCCCCCC--CCCCCccccccccCCCCCeEEEEEEcccCC
Q psy5076         146 WTAQNISGEVGSIPVPYVQKYSEGMS-ILSL-----RNLHLDSSSHHV--PQQQTTPVRKTHLEVKLPAFARVKQVRVPN  217 (288)
Q Consensus       146 w~~~~~~g~~G~vP~~~v~~~~~~~~-~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  217 (288)
                      |..++..|++|++|.+||+....... ...+     ..+.+.+..+..  +++..+......+.+.+|.+++++++..|.
T Consensus       160 W~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPn  239 (293)
T KOG4792|consen  160 WNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGGGAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPN  239 (293)
T ss_pred             hhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCCCCCCCCCCCcccCCcCccccCCChheeeehhcCCC
Confidence            99999999999999999998765431 1111     112222222222  222223333344555579999999999999


Q ss_pred             CCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCcc
Q psy5076         218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSV  269 (288)
Q Consensus       218 ~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~  269 (288)
                      |+++..|.++.||+|.|.++..+|.|+|+++|+.|.||-.||+.+..+++.+
T Consensus       240 AYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~~~~de  291 (293)
T KOG4792|consen  240 AYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDVQNPDE  291 (293)
T ss_pred             ccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeeccCCcCc
Confidence            9999999999999999999999999999999999999999999998887643

>KOG1264|consensus

Probab=99.96  E-value=2.9e-29  Score=234.22  Aligned_cols=257  Identities=19%  Similarity=0.247  Sum_probs=164.5

Q ss_pred             CCCCCCCccccCCC-HHHHHHHHcC-----CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC
Q psy5076           6 DPHDRNSWYFGMMT-RQEAQAILLS-----EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD   79 (288)
Q Consensus         6 ~~~~~~~Wy~g~is-r~~ae~lL~~-----~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~   79 (288)
                      ..|-.+.||||.+. |.+|++||.+     +..||+||||+|++..|+|+||++.+|+|.|+||+....+...++|..++
T Consensus       529 ElH~~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~dN  608 (1267)
T KOG1264|consen  529 ELHFGEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTDN  608 (1267)
T ss_pred             hhccchhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEecc
Confidence            34667899999999 9999999975     35679999999999999999999999999999999776554556455568


Q ss_pred             cccCChhhhhhhheecccCC----CcccccccceeeEEeeeccCCCC---C-CCCCC-CCC----------CCEEEEEEe
Q psy5076          80 KTFSDLPSLLAFYKVHYLDT----SPLIKPATKTIEKVIAKYDFDGN---D-PDDLP-FKK----------NDILIVVSK  140 (288)
Q Consensus        80 ~~F~sl~~LV~~y~~~~l~~----~~l~~p~~~~~~~~~a~~~~~~~---~-~~eLs-~~~----------g~~i~vl~~  140 (288)
                      ..|+||.+||.||+.+.|.+    ..|+.|||++..+-.-.+-+...   . .+-|. +.+          +.-..++..
T Consensus       609 ~vfdslY~LI~~Y~~~~Lr~aeF~m~LtePvPqp~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~~~~nsy~iSf  688 (1267)
T KOG1264|consen  609 LVFDSLYALIQHYRETHLRCAEFEMRLTEPVPQPNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKREGSNSYAISF  688 (1267)
T ss_pred             hhHHHHHHHHHHHHhccccccceEEEecCCCCCCCcccCCccccccccHHHHHHHHhhCccCcceEEEeccCCceEEEEE
Confidence            89999999999999999984    57999999864432221111110   0 00011 111          111223332


Q ss_pred             -cCCCeEEEEe-CCCcEEEEeCCCeEeccc------------------CCcccccc---cCCCCCCCCCCCCCCCccccc
Q psy5076         141 -DEEHWWTAQN-ISGEVGSIPVPYVQKYSE------------------GMSILSLR---NLHLDSSSHHVPQQQTTPVRK  197 (288)
Q Consensus       141 -~~~~ww~~~~-~~g~~G~vP~~~v~~~~~------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  197 (288)
                       .++..|.|+. .+|+.-.+-..-++.+..                  +.....++   ...-.++.......+..+...
T Consensus       689 r~~gkikHcRi~rdGr~fvl~t~~FesLv~lv~yY~k~~lyR~mkLr~PVnee~l~~~~~e~d~~a~~d~~r~pg~yme~  768 (1267)
T KOG1264|consen  689 RARGKIKHCRINRDGRHFVLGTSAFESLVELVSYYEKHPLYRKMKLRYPVNEELLERYNTERDINALYDVSRMPGDYMEI  768 (1267)
T ss_pred             EEcCcEeEEEEccCceEEEeccHHHHHHHHHHHHHhcChhhhcccccCcCCHHHHHHhhhhcccccccccccCCCCcccc
Confidence             2344677764 334433222111111100                  00000000   000000000000001111111


Q ss_pred             cc-cCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCC-eeeEecCCcEEEcCCCCC
Q psy5076         198 TH-LEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG-KTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       198 ~~-~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~-~~G~~P~~~v~~~~~~~~  267 (288)
                      .. ++   .+.++|||+|  .|..++||+|.+|.+|.++++..+|||.|..+| ..+|||+|||+.+.+...
T Consensus       769 n~~~~---~vt~kAL~~Y--ka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~~~  835 (1267)
T KOG1264|consen  769 NPSMP---QVTVKALYDY--KAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTADF  835 (1267)
T ss_pred             Ccccc---chhhhhhhcc--ccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccccc
Confidence            11 11   2468999999  778888999999999999999999999999986 689999999999988654

>KOG1264|consensus

Probab=99.95  E-value=2.3e-28  Score=228.26  Aligned_cols=158  Identities=29%  Similarity=0.562  Sum_probs=140.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCCh
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDL   85 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl   85 (288)
                      .+|++++|||..++|++||++|..-+.||+||||.+. ....|+||++.+++|+||||.+.+..     |.++...|++|
T Consensus       643 ~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~~-~~nsy~iSfr~~gkikHcRi~rdGr~-----fvl~t~~FesL  716 (1267)
T KOG1264|consen  643 NPHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKRE-GSNSYAISFRARGKIKHCRINRDGRH-----FVLGTSAFESL  716 (1267)
T ss_pred             CcccCCccccccccHHHHHHHHhhCccCcceEEEecc-CCceEEEEEEEcCcEeEEEEccCceE-----EEeccHHHHHH
Confidence            4899999999999999999999998888999999444 46789999999999999999986544     99998899999


Q ss_pred             hhhhhhheecccC-CCcccccccce--------------------------------eeEEeeeccCCCCCCCCCCCCCC
Q psy5076          86 PSLLAFYKVHYLD-TSPLIKPATKT--------------------------------IEKVIAKYDFDGNDPDDLPFKKN  132 (288)
Q Consensus        86 ~~LV~~y~~~~l~-~~~l~~p~~~~--------------------------------~~~~~a~~~~~~~~~~eLs~~~g  132 (288)
                      .+||+||.+++|- ...|.+|+..+                                ...+.|+++|.+..++||+|.++
T Consensus       717 v~lv~yY~k~~lyR~mkLr~PVnee~l~~~~~e~d~~a~~d~~r~pg~yme~n~~~~~vt~kAL~~Yka~r~DELSFpk~  796 (1267)
T KOG1264|consen  717 VELVSYYEKHPLYRKMKLRYPVNEELLERYNTERDINALYDVSRMPGDYMEINPSMPQVTVKALYDYKAKRSDELSFPKG  796 (1267)
T ss_pred             HHHHHHHhcChhhhcccccCcCCHHHHHHhhhhcccccccccccCCCCccccCccccchhhhhhhccccCCccccccccc
Confidence            9999999999986 67888887763                                12477999999999999999999


Q ss_pred             CEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         133 DILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       133 ~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      -+|.+++++++|||.|...+...+|||+|||+++...
T Consensus       797 aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~  833 (1267)
T KOG1264|consen  797 AIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA  833 (1267)
T ss_pred             ceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence            9999999999999999965567899999999987763

>KOG2996|consensus

Probab=99.94  E-value=8.5e-27  Score=211.31  Aligned_cols=151  Identities=30%  Similarity=0.598  Sum_probs=133.7

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChhhh
Q psy5076          10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSL   88 (288)
Q Consensus        10 ~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~L   88 (288)
                      ..+||.|.|.|.+||.+|+.... |+||||.+....+.|++|+++++.|+|++|...++.     |+|. ...|.++.||
T Consensus       684 ~~~WyaG~MERaqaes~Lk~~~n-gT~LVR~r~kea~e~AISikynnevKHikI~~~dg~-----~~i~E~k~F~sl~EL  757 (865)
T KOG2996|consen  684 EFPWYAGEMERAQAESTLKNRPN-GTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGK-----VHITEDKKFNSLVEL  757 (865)
T ss_pred             hhhhhcchHhhhhhhhHhhcCCC-ceEEEEecccchhheeEEEEeccccceEEEEecCCe-----EEechhhhhhhHHHH
Confidence            35899999999999999987766 999999998878899999999999999999988654     8887 5799999999


Q ss_pred             hhhheecccC------CCcccccccce--------------------eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec-
Q psy5076          89 LAFYKVHYLD------TSPLIKPATKT--------------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-  141 (288)
Q Consensus        89 V~~y~~~~l~------~~~l~~p~~~~--------------------~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-  141 (288)
                      |+||+.++|.      .++|+.|+..+                    ...+++-|||-+.+-.+|+|+.||+|.++.+. 
T Consensus       758 VeyYq~~sLke~Fk~LDTtLk~Pyke~e~sa~~~~~~~~~sv~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g  837 (865)
T KOG2996|consen  758 VEYYQSHSLKEIFKALDTTLKFPYKEPEHSAGQRGNRAGNSVLSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVG  837 (865)
T ss_pred             HHHHHhccHHHHHHHhhhhhcCCCcChhhhhhhccccccccccCcceeeeeeeccccCCCchhhcccccCCEEEEehhcc
Confidence            9999999985      46788888732                    34678889999999999999999999999875 


Q ss_pred             -CCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         142 -EEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       142 -~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                       +.|||.|. .+|+.||||++||++..
T Consensus       838 ~d~GWWkGe-vngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  838 EDQGWWKGE-VNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             ccCceecce-ecCcccccccccccccC
Confidence             46999999 99999999999998754

>KOG4226|consensus

Probab=99.87  E-value=5.9e-22  Score=165.22  Aligned_cols=155  Identities=25%  Similarity=0.378  Sum_probs=115.6

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccc---------cccCCCC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILS---------LRNLHLD  181 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~---------~~~~~~~  181 (288)
                      ..++|.+||.++...||.+++++.+.+++ +..-||++++...+.|+||+|||+..+.......         +......
T Consensus         5 ~~vvak~dy~aq~~qeldikkner~~lld-dsk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~   83 (379)
T KOG4226|consen    5 VIVVAKWDYTAQQDQELDIKKNERLWLLD-DSKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKT   83 (379)
T ss_pred             EEEEEEechhcccchhccccccceEEEEc-CCccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccCC
Confidence            45789999999999999999999998888 5568999999889999999999998765532111         1122222


Q ss_pred             CCCCCCCCCCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEE
Q psy5076         182 SSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF  261 (288)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~  261 (288)
                      ++....+++.......++....+...+.+.|.|  .++.++||+|-+|..|.|++++.+|||.|..+|+.||||+|||.+
T Consensus        84 s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y--~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E  161 (379)
T KOG4226|consen   84 SARDASPSPSTDAEYPPDRIYDLNTPAVVKFNY--VAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTE  161 (379)
T ss_pred             CccccCCCCCccccCCcchhhhcCCceEEEEee--ccccccccccccCcEEEEEEeccCcceecccCCeeccccccceeh
Confidence            333333333322222222211222347778888  678888999999999999999999999999999999999999998


Q ss_pred             cCCCCCc
Q psy5076         262 IPTNETS  268 (288)
Q Consensus       262 ~~~~~~~  268 (288)
                      ..++.++
T Consensus       162 ~~ds~~g  168 (379)
T KOG4226|consen  162 EVDSAAG  168 (379)
T ss_pred             hcccccc
Confidence            8777543

>KOG4226|consensus

Probab=99.85  E-value=2e-21  Score=162.01  Aligned_cols=142  Identities=18%  Similarity=0.348  Sum_probs=108.5

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccc--cccCCCCCCCCCCCC
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILS--LRNLHLDSSSHHVPQ  189 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~  189 (288)
                      .+++.|.|.++..+||++.+|+.|.|++++.+|||.|. .+|+.||||+||+.+..+......  .-+.++..+..+.++
T Consensus       109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~-~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~~~  187 (379)
T KOG4226|consen  109 PAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGS-YNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNGQG  187 (379)
T ss_pred             ceEEEEeeccccccccccccCcEEEEEEeccCcceecc-cCCeeccccccceehhccccccCCccceecchhhcccCCCC
Confidence            37788999999999999999999999999999999999 699999999999988766533211  000111111000000


Q ss_pred             CCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEe-CCeeeEecCCcEEEcCCCC
Q psy5076         190 QQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGEL-NGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~-~~~~G~~P~~~v~~~~~~~  266 (288)
                                  ...-..++|||.|  .+....||+|++||.+.|+++.  |.+||.++. .|+.|+||.|||+.+.+..
T Consensus       188 ------------s~vl~vVvaLYsF--sssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~  253 (379)
T KOG4226|consen  188 ------------SRVLHVVVALYSF--SSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGP  253 (379)
T ss_pred             ------------ceEEEEEEEEecc--cCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCc
Confidence                        1112368999999  5677779999999999999876  679997755 6999999999999998877


Q ss_pred             Cc
Q psy5076         267 TS  268 (288)
Q Consensus       267 ~~  268 (288)
                      ..
T Consensus       254 ~t  255 (379)
T KOG4226|consen  254 ST  255 (379)
T ss_pred             cc
Confidence            54

>smart00252 SH2 Src homology 2 domains

Probab=99.85  E-value=5.5e-21  Score=137.90  Aligned_cols=82  Identities=37%  Similarity=0.722  Sum_probs=74.0

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC-cccCChhhhh
Q psy5076          11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KTFSDLPSLL   89 (288)
Q Consensus        11 ~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-~~F~sl~~LV   89 (288)
                      ++||||.|+|++||++|...+ +|+||||.|++..+.|+||++.++.++||+|.....+   . |.+.+ ..|+||.+||
T Consensus         1 ~~w~~g~i~r~~Ae~lL~~~~-~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~---~-~~l~~~~~F~sl~eLI   75 (84)
T smart00252        1 QPWYHGFISREEAEKLLKNEG-DGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDG---K-FYLDGGRKFPSLVELV   75 (84)
T ss_pred             CCeecccCCHHHHHHHHhcCC-CcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCC---c-EEECCCCccCCHHHHH
Confidence            489999999999999998866 5999999999888999999999999999999987643   3 88885 8999999999


Q ss_pred             hhheeccc
Q psy5076          90 AFYKVHYL   97 (288)
Q Consensus        90 ~~y~~~~l   97 (288)
                      +||+.+++
T Consensus        76 ~~y~~~~~   83 (84)
T smart00252       76 EHYQKNSL   83 (84)
T ss_pred             HHHhhCCC
Confidence            99998765

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.

>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr)

Probab=99.85  E-value=5.7e-21  Score=140.72  Aligned_cols=89  Identities=37%  Similarity=0.706  Sum_probs=77.0

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC--CcccCChhhhh
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTFSDLPSLL   89 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~~F~sl~~LV   89 (288)
                      +||||.|+|++|+++|+.. .+|+||||.|.+..+.|+||++.+++++||+|....++     +.+.  ...|+||.+||
T Consensus         1 ~w~~g~i~r~~Ae~~L~~~-~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~-----~~~~~~~~~f~sl~eLv   74 (94)
T cd00173           1 PWYHGPISREEAEELLKKK-PDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDG-----YYLLGEGRSFPSLPELI   74 (94)
T ss_pred             CccccCCCHHHHHHHHhcC-CCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCC-----eEEecCCCccCCHHHHH
Confidence            6999999999999999885 44999999999878999999999999999999988765     4444  78999999999


Q ss_pred             hhheeccc--C-CCcccccc
Q psy5076          90 AFYKVHYL--D-TSPLIKPA  106 (288)
Q Consensus        90 ~~y~~~~l--~-~~~l~~p~  106 (288)
                      +||+.+++  . ++.|..|+
T Consensus        75 ~~y~~~~~~~~~~~~L~~p~   94 (94)
T cd00173          75 EHYQKNPLSDGLGVKLRYPV   94 (94)
T ss_pred             HHHhhCccCCCcccEeCCcC
Confidence            99999885  2 55666664

SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.

>KOG4348|consensus

Probab=99.85  E-value=1.3e-21  Score=172.51  Aligned_cols=152  Identities=30%  Similarity=0.536  Sum_probs=112.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccc------cc------c
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILS------LR------N  177 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~------~~------~  177 (288)
                      .+.|++.|.|.+++.+||.|+.||+|.++...+.|||.|. .+|..|+||+|||.++........      ++      +
T Consensus       100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~-Lngk~GmFPsNFVkel~~~sde~~~aqd~~~S~stlags  178 (627)
T KOG4348|consen  100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGK-LNGKVGMFPSNFVKELPTPSDESAAAQDPAASASTLAGS  178 (627)
T ss_pred             ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhce-ecCcccccchhhceecCCCCcchhhhcCcccchhhhcCc
Confidence            5679999999999999999999999999999999999999 899999999999998876533110      00      0


Q ss_pred             CCCCCCC--------CC--CCC-------------------------------------------CCCccccccccC--C
Q psy5076         178 LHLDSSS--------HH--VPQ-------------------------------------------QQTTPVRKTHLE--V  202 (288)
Q Consensus       178 ~~~~~~~--------~~--~~~-------------------------------------------~~~~~~~~~~~~--~  202 (288)
                      ..+.++.        ++  +|.                                           .++..+...++.  .
T Consensus       179 t~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~tktd~~~~t  258 (627)
T KOG4348|consen  179 TARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDITKTDTAETT  258 (627)
T ss_pred             CCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCccccccccccch
Confidence            0111100        00  110                                           001111122221  1


Q ss_pred             CCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       203 ~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      +...||+++|.|  .++..+||+|+.||+|.++.+.  +.|||+|+++|+.|.||-|||+.++.
T Consensus       259 KtKeycrv~F~Y--e~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~~  320 (627)
T KOG4348|consen  259 KTKEYCRVKFVY--EPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQV  320 (627)
T ss_pred             hhhhheeeeeee--cCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcCC
Confidence            235699999999  5577779999999999998765  67999999999999999999999873

>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []

Probab=99.84  E-value=1.7e-20  Score=133.10  Aligned_cols=76  Identities=41%  Similarity=0.777  Sum_probs=68.8

Q ss_pred             ccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChhhhhhh
Q psy5076          13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAF   91 (288)
Q Consensus        13 Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~LV~~   91 (288)
                      ||||.|+|++||++|+...++|+||||.|.+.++.|+|||+.+++++||+|.+...+   . |++. +..|+||.+||+|
T Consensus         1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~---~-~~~~~~~~F~sl~~LV~~   76 (77)
T PF00017_consen    1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENG---G-YFLSDGKKFPSLSDLVEH   76 (77)
T ss_dssp             TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTS---E-EESSTSSEBSSHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCc---e-EEccCCCcCCCHHHHHHh
Confidence            999999999999999985556999999999888999999999999999999998765   4 6665 5789999999999


Q ss_pred             h
Q psy5076          92 Y   92 (288)
Q Consensus        92 y   92 (288)
                      |
T Consensus        77 y   77 (77)
T PF00017_consen   77 Y   77 (77)
T ss_dssp             H
T ss_pred             C
Confidence            8

Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....

>KOG3601|consensus

Probab=99.82  E-value=8.4e-21  Score=153.31  Aligned_cols=157  Identities=23%  Similarity=0.416  Sum_probs=131.9

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccC
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFS   83 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~   83 (288)
                      ++......+||+|.|+|..||++|+.... |+||+|.+...+|+|.++++....|.||++.+...+   + |++....|.
T Consensus        51 Nai~~~~~~wve~~i~r~~ae~~l~~~~~-G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~---k-~~lw~skfn  125 (222)
T KOG3601|consen   51 NAIRMKPHEWVEGLIPRPLAEDLLSKKRD-GDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFG---K-YFLWSSKFN  125 (222)
T ss_pred             cccccccccceecccccchhhhhhhccCc-chhhhhhhhcCcccccccccCCCCceeccccccCcc---c-cccchhhcc
Confidence            44444456999999999999999988555 999999999999999999999999999999987655   4 888888999


Q ss_pred             ChhhhhhhheecccCC-----Ccccc----ccc--ceeeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC
Q psy5076          84 DLPSLLAFYKVHYLDT-----SPLIK----PAT--KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS  152 (288)
Q Consensus        84 sl~~LV~~y~~~~l~~-----~~l~~----p~~--~~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~  152 (288)
                      ++.+||+||.+.+...     .....    |++  .+.....+.++|.++.+.++.|++|+.+.|+...+..||.|. ..
T Consensus       126 slnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs-~l  204 (222)
T KOG3601|consen  126 SLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGS-KL  204 (222)
T ss_pred             CCCCCcccCcccccccceeeeecccccccccCCCCccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhcc-cc
Confidence            9999999999887541     11111    233  235567899999999999999999999999999999999999 88


Q ss_pred             CcEEEEeCCCeEec
Q psy5076         153 GEVGSIPVPYVQKY  166 (288)
Q Consensus       153 g~~G~vP~~~v~~~  166 (288)
                      |+.|+||++|+...
T Consensus       205 g~agiFpagyv~p~  218 (222)
T KOG3601|consen  205 GRAGIFPAGYVAPS  218 (222)
T ss_pred             CceeeecCcccccc
Confidence            99999999998643

>KOG1029|consensus

Probab=99.79  E-value=6.3e-20  Score=171.29  Aligned_cols=131  Identities=24%  Similarity=0.441  Sum_probs=107.4

Q ss_pred             cccceeeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CC---CcEEEEeCCCeEecccCCcccccccCCC
Q psy5076         105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-IS---GEVGSIPVPYVQKYSEGMSILSLRNLHL  180 (288)
Q Consensus       105 p~~~~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~---g~~G~vP~~~v~~~~~~~~~~~~~~~~~  180 (288)
                      |.+++...+.++.+|.+..+..|++..|++|.|..+...|||.|.. .+   .+.||||++||.-+.....+..      
T Consensus       974 ~~~kkpeiAqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raT------ 1047 (1118)
T KOG1029|consen  974 PTPKKPEIAQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRAT------ 1047 (1118)
T ss_pred             CCCCCchhhhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCC------
Confidence            3444456677889999999999999999999999999999999974 22   3679999999988887633221      


Q ss_pred             CCCCCCCCCCCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEE
Q psy5076         181 DSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE  260 (288)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~  260 (288)
                             |.          .  ...|.+.++|||  .|+.++||+|.+||+|.|+.+.+.+||.|+++|+.|+||+|||.
T Consensus      1048 -------Pa----------~--~~v~qviamYdY--~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~ 1106 (1118)
T KOG1029|consen 1048 -------PA----------T--RPVCQVIAMYDY--EAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQ 1106 (1118)
T ss_pred             -------CC----------C--CccceeEEeecc--ccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccc
Confidence                   00          0  002568899999  78999999999999999999999999999999999999999995


Q ss_pred             Ec
Q psy5076         261 FI  262 (288)
Q Consensus       261 ~~  262 (288)
                      ..
T Consensus      1107 k~ 1108 (1118)
T KOG1029|consen 1107 KQ 1108 (1118)
T ss_pred             cc
Confidence            44

>KOG4225|consensus

Probab=99.77  E-value=2e-18  Score=152.77  Aligned_cols=147  Identities=27%  Similarity=0.431  Sum_probs=105.5

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccccc--------c--C---
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLR--------N--L---  178 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~--------~--~---  178 (288)
                      .++|+|+|.++...||+|.+||+|.|+.+.+..|+.|. .+|+.|+||++||+.+.......+..        .  +   
T Consensus       232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGE-hhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A~  310 (489)
T KOG4225|consen  232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGE-HHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIAK  310 (489)
T ss_pred             hhhheeccccCCccccccCCCCEEEEEeeccCceeeee-ecceecceechheeecCcccccCcCCCCccccccccccccc
Confidence            47899999999999999999999999999999999999 89999999999999987732111100        0  0   


Q ss_pred             ------CCCCCC----------------------------CCCCC-----------------------------------
Q psy5076         179 ------HLDSSS----------------------------HHVPQ-----------------------------------  189 (288)
Q Consensus       179 ------~~~~~~----------------------------~~~~~-----------------------------------  189 (288)
                            .++..+                            +..|.                                   
T Consensus       311 y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~~~p~~p~~s~~~~~~~~  390 (489)
T KOG4225|consen  311 YNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYPDLPIPPRSSNELRPLSE  390 (489)
T ss_pred             CCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccCCCCCCcccchhhccccc
Confidence                  000000                            00000                                   


Q ss_pred             ---------CCCccc--------cccc--------cCC-CCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCee
Q psy5076         190 ---------QQTTPV--------RKTH--------LEV-KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQW  243 (288)
Q Consensus       190 ---------~~~~~~--------~~~~--------~~~-~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~  243 (288)
                               .++...        ..+.        .+. +-+.-++|||.|  .++..+||-|..||+|.|++++|+||+
T Consensus       391 ~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y--~pqnedeLEl~egDii~VmeKcddgWf  468 (489)
T KOG4225|consen  391 DSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSY--RPQNEDELELREGDIIDVMEKCDDGWF  468 (489)
T ss_pred             chhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceecccc--CCCCchhheeccCCEEeeeecccCcce
Confidence                     000000        0000        000 012337999999  557777999999999999999999999


Q ss_pred             EE--EeCCeeeEecCCcEEE
Q psy5076         244 EG--ELNGKTGHFPFTHVEF  261 (288)
Q Consensus       244 ~~--~~~~~~G~~P~~~v~~  261 (288)
                      .|  ++.|+.|.||-|||+.
T Consensus       469 vGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  469 VGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             eccceecccccccCcccccc
Confidence            99  7789999999999975

>KOG4348|consensus

Probab=99.75  E-value=3.5e-19  Score=157.22  Aligned_cols=150  Identities=28%  Similarity=0.447  Sum_probs=112.1

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccccccCCCC-------CCC
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLD-------SSS  184 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~-------~~~  184 (288)
                      .+++.|||.++.++||.++.|++|+-+.+.+.|||.|. .+|+.|.||-|+|.+++.....+++.+-.+.       +..
T Consensus         3 d~ive~dy~a~hddelti~vgeii~nvkk~e~gw~ege-lngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n   81 (627)
T KOG4348|consen    3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGE-LNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRN   81 (627)
T ss_pred             ceeeecccccccCceeeEeHHHHHHhhhhhccceeece-eccccccCCchhhhhhhhhcccccccccccccchhhcccCC
Confidence            36788999999999999999999999998999999999 9999999999999887766443332211100       000


Q ss_pred             CCCCCCC-CccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         185 HHVPQQQ-TTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       185 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      .-..+.+ ......+..+   .-.|+++|.|.+  +..+||.|..||+|.+++....|||.|.++|+.|+||+|||..+.
T Consensus        82 ~l~~~q~v~rtn~~~q~~---~r~c~v~f~Y~p--qndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~  156 (627)
T KOG4348|consen   82 PLTVHQQVERTNPPPQPQ---ARICVVTFAYSP--QNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELP  156 (627)
T ss_pred             CccccCcccccCCCCCcc---ceeEEEEEeecC--CCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecC
Confidence            0000000 0111111111   337899999965  666699999999999999999999999999999999999999986


Q ss_pred             CCCC
Q psy5076         264 TNET  267 (288)
Q Consensus       264 ~~~~  267 (288)
                      ....
T Consensus       157 ~~sd  160 (627)
T KOG4348|consen  157 TPSD  160 (627)
T ss_pred             CCCc
Confidence            6554

>KOG4278|consensus

Probab=99.71  E-value=2.1e-17  Score=153.08  Aligned_cols=104  Identities=29%  Similarity=0.479  Sum_probs=91.8

Q ss_pred             CCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcc
Q psy5076           2 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKT   81 (288)
Q Consensus         2 ~~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~   81 (288)
                      +..+++++...||||.+||..||.+|...-. |.||||+|++.+|+|+||+|+++.|+||+|.....+   +.|...+..
T Consensus       143 ItPvNSLeKhsWYHGpvSRsaaEy~LsSgIn-GSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dg---K~yvt~Esr  218 (1157)
T KOG4278|consen  143 ITPVNSLEKHSWYHGPVSRSAAEYILSSGIN-GSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDG---KMYVTQESR  218 (1157)
T ss_pred             cccccchhhcccccCccccchhhhhhhcCcc-cceEEeeccCCCcceeEEEEecceEEEEEeeccCCc---cEEEeehhh
Confidence            3467889999999999999999999987655 999999999999999999999999999999986655   535555789


Q ss_pred             cCChhhhhhhheecccC-CCcccccccce
Q psy5076          82 FSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      |.+|.|||.||.+..++ .|.|++|.+++
T Consensus       219 F~TLaELVHHHStvADGLittLhYPApK~  247 (1157)
T KOG4278|consen  219 FRTLAELVHHHSTVADGLITTLHYPAPKK  247 (1157)
T ss_pred             hhHHHHHHhhccccccceeEeeeccCccC
Confidence            99999999999999888 78899998874

>KOG1029|consensus

Probab=99.70  E-value=1.9e-17  Score=154.95  Aligned_cols=151  Identities=31%  Similarity=0.498  Sum_probs=115.3

Q ss_pred             eEEeeec-cCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccccccCCCCCCCCCCCC
Q psy5076         111 EKVIAKY-DFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQ  189 (288)
Q Consensus       111 ~~~~a~~-~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (288)
                      +.+.+++ .+.+....+|.|..||.|.|++++ +.||.|+ .+++.|.||+||+.........             ..|+
T Consensus       906 eq~ya~~~~~e~vEq~dlt~~egd~iLvtekd-geww~gt-~~~r~gifPan~y~r~~~q~gs-------------~Tp~  970 (1118)
T KOG1029|consen  906 EQLYAVYPYFEAVEQGDLTFHEGDEILVTEKD-GEWWTGT-CGDREGIFPANYYVRPKDQEGS-------------GTPP  970 (1118)
T ss_pred             ceeEEEecccccccCCCccccccceEEEeecc-Cceeccc-cCCccccccccceeeehhccCC-------------CCCC
Confidence            3444544 455688899999999999888865 5799999 9999999999966554432110             0000


Q ss_pred             CCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--C---eeeEecCCcEEEcCC
Q psy5076         190 QQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--G---KTGHFPFTHVEFIPT  264 (288)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~---~~G~~P~~~v~~~~~  264 (288)
                             ......+.|+.++++-+|  .|..++.|++..|++|.|.++...|||+|++.  |   +.||||.+||+.++.
T Consensus       971 -------k~g~~~kkpeiAqVia~y--vAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~ 1041 (1118)
T KOG1029|consen  971 -------KQGPTPKKPEIAQVIADY--VASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEP 1041 (1118)
T ss_pred             -------CCCCCCCCchhhhhhhhh--hccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccC
Confidence                   011111237789999999  67888899999999999999999999999763  3   569999999999876


Q ss_pred             CC-----------------------CccCCCCCCccccCCCCCC
Q psy5076         265 NE-----------------------TSVETNGNGDIHNSTPKTE  285 (288)
Q Consensus       265 ~~-----------------------~~~~~~~~~~~~~~~~~~~  285 (288)
                      ..                       +.+.+++++|||++.+|+.
T Consensus      1042 ~s~raTPa~~~v~qviamYdY~AqndDELsF~kgdiI~Vlnkde 1085 (1118)
T KOG1029|consen 1042 GSGRATPATRPVCQVIAMYDYEAQNDDELSFKKGDIINVLNKDE 1085 (1118)
T ss_pred             CCCcCCCCCCccceeEEeeccccCCcccccccCCCEEEecCCCC
Confidence            62                       4477899999999999875

>KOG4637|consensus

Probab=99.66  E-value=8.2e-17  Score=139.72  Aligned_cols=97  Identities=28%  Similarity=0.545  Sum_probs=85.6

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCC
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSD   84 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~s   84 (288)
                      +.+..++||||.|||+++.+.|++.+. |+||||+-++..|+|+|+++.++.++-++|...++.     |-|. .-.|.|
T Consensus        18 ~~L~~a~WYWgdisReev~~~L~d~PD-GsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgK-----yGF~d~ltf~S   91 (464)
T KOG4637|consen   18 DELQDAEWYWGDISREEVNKKLRDQPD-GSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGK-----YGFSDPLTFNS   91 (464)
T ss_pred             hhhhhccccccccCHHHHHHHhcCCCC-CcEEeeccccCCCceEEEEecCCccceeeeEEecCc-----cCCCCchhhHH
Confidence            347778999999999999999987755 999999988889999999999999999999998876     5555 569999


Q ss_pred             hhhhhhhheecccC------CCcccccccc
Q psy5076          85 LPSLLAFYKVHYLD------TSPLIKPATK  108 (288)
Q Consensus        85 l~~LV~~y~~~~l~------~~~l~~p~~~  108 (288)
                      +.+||+||++.+|.      ...|++|+.+
T Consensus        92 VVelIn~yr~~SL~~yN~~LDvrLlyPVs~  121 (464)
T KOG4637|consen   92 VVELINHYRNESLAQYNPKLDVRLLYPVSR  121 (464)
T ss_pred             HHHHHHHHhhhHHHhhCcccceeeechHHH
Confidence            99999999999885      4678999876

>KOG0790|consensus

Probab=99.66  E-value=1.5e-16  Score=141.35  Aligned_cols=95  Identities=29%  Similarity=0.601  Sum_probs=82.1

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCC---------eEEEEEEEeecCCCcceEEeeC-
Q psy5076           9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN---------KVSHYIINKITNTEQQTCYKIG-   78 (288)
Q Consensus         9 ~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~---------~v~h~~I~~~~~~~~~~~~~~~-   78 (288)
                      .++.||||.|+-.+||+||.++...|+||||.|.+.+|+|+|||+.+.         +|.|..|...+..     |-++ 
T Consensus       108 tserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~k-----ydVGg  182 (600)
T KOG0790|consen  108 TSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGK-----YDVGG  182 (600)
T ss_pred             hhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecccc-----cccCC
Confidence            346799999999999999977666699999999999999999999854         8999999998754     9997 


Q ss_pred             CcccCChhhhhhhheecccC-----CCcccccccc
Q psy5076          79 DKTFSDLPSLLAFYKVHYLD-----TSPLIKPATK  108 (288)
Q Consensus        79 ~~~F~sl~~LV~~y~~~~l~-----~~~l~~p~~~  108 (288)
                      +..|+|+.+||+||+++|+-     ...|.+|+..
T Consensus       183 ge~F~sltdLidhykknpmvEt~gtvv~LrqP~na  217 (600)
T KOG0790|consen  183 GERFDSLTDLVEHYKKNPMVETLGTVVYLRQPLNA  217 (600)
T ss_pred             ccccchHHHHHHHhccCchhhhcceeEEeeccccc
Confidence            57999999999999999974     2457777664

>KOG0197|consensus

Probab=99.55  E-value=1e-14  Score=133.28  Aligned_cols=101  Identities=36%  Similarity=0.636  Sum_probs=85.6

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHc-CCCCCCeEEEEeCCCCCCceEEEEeeCC------eEEEEEEEeecCCCcceEEe
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENN------KVSHYIINKITNTEQQTCYK   76 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~-~~~~~G~FLvR~s~~~~~~~~lsv~~~~------~v~h~~I~~~~~~~~~~~~~   76 (288)
                      .+.+++.++||||.|+|++||+.|. .....|+||||+|++..|.|+|||+...      .|+||+|...+.+   . |+
T Consensus        74 ~~~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~---~-~~  149 (468)
T KOG0197|consen   74 AFIKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGG---G-LY  149 (468)
T ss_pred             CccccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCC---C-ee
Confidence            4578889999999999999996554 4455599999999999999999999866      8999999998765   2 44


Q ss_pred             --eC-CcccCChhhhhhhheecccC-CCcccccccc
Q psy5076          77 --IG-DKTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        77 --~~-~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                        +. ...|.+|.+||+||+.+..+ +..|..||..
T Consensus       150 ~~~~~~~~F~~l~~lv~~~~~~~~gl~~~l~~p~~~  185 (468)
T KOG0197|consen  150 PYIDERELFSSLQQLVNYYSKNADGLCTRLRDPCSK  185 (468)
T ss_pred             cCCCHHHhhhhHHHHHhhhhccCcchhhcccCchhc
Confidence              65 57999999999999999988 7788888876

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.49  E-value=5.2e-14  Score=90.30  Aligned_cols=49  Identities=35%  Similarity=0.529  Sum_probs=43.1

Q ss_pred             EEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEE
Q psy5076         210 VKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE  260 (288)
Q Consensus       210 ~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~  260 (288)
                      |+|+|  .+..++||+|.+||+|.|+++.+++||.++.+|+.|+||++||+
T Consensus         1 Al~~y--~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDY--EAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCB--CSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccC--CCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            68899  56777799999999999999999999999999999999999996

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.40  E-value=6.6e-13  Score=87.55  Aligned_cols=54  Identities=37%  Similarity=0.545  Sum_probs=47.1

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEE-EeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~-~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      +++|++||  .+..+++|+|.+||+|.|+ ++.+++||.++.+|+.||||.+||+++
T Consensus         1 ~~~a~~d~--~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDY--VAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSB--ESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred             CEEEeEEE--CCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence            57899999  5577889999999999999 888899999999999999999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.37  E-value=1.1e-12  Score=84.10  Aligned_cols=49  Identities=43%  Similarity=1.011  Sum_probs=44.3

Q ss_pred             eeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeE
Q psy5076         115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ  164 (288)
Q Consensus       115 a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~  164 (288)
                      |+++|.++..+||+|++||+|.|+.+.+++||.+++ +|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN-TGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE-TTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE-CCEEEEECHHhCC
Confidence            689999999999999999999999998999999995 9999999999985

...

>KOG4637|consensus

Probab=99.35  E-value=7.7e-13  Score=115.22  Aligned_cols=96  Identities=27%  Similarity=0.514  Sum_probs=79.1

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC--ccc
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--KTF   82 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~--~~F   82 (288)
                      ..++...-|+.+.+-|..||.||+..+. |+||||.|+. .|+|+|||..++.|+||.|.++..|     |-|..  ..+
T Consensus       326 ~ph~~e~~w~~~~a~r~kAe~llrg~~d-GtFLIR~ss~-~g~yalSV~~~~~V~HClIy~tatG-----~GFa~pyn~y  398 (464)
T KOG4637|consen  326 LPHNDEKTWRVRDANRDKAEELLRGKPD-GTFLIRESSK-GGCYALSVVHDGEVKHCLIYQTATG-----FGFAEPYNLY  398 (464)
T ss_pred             CcchhhhHhHHhhhhHHHHHHHhcCCCC-CeEEEeeccC-CCceEEEEEECCceeeeEEeecccc-----ccccchhHHH
Confidence            3344445799999999999999977655 9999999664 8999999999999999999998887     77764  478


Q ss_pred             CChhhhhhhheecccC------CCccccccc
Q psy5076          83 SDLPSLLAFYKVHYLD------TSPLIKPAT  107 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l~------~~~l~~p~~  107 (288)
                      .||.+||.||+..+|.      .+.|.+|+-
T Consensus       399 ~tlk~lV~hY~h~SLe~HnDal~ttLr~Pv~  429 (464)
T KOG4637|consen  399 STLKELVLHYQHTSLEQHNDALTTTLRYPVF  429 (464)
T ss_pred             HHHHHHHHHHhhhhHHhhcccccccccccee
Confidence            9999999999999885      345555543

>KOG1930|consensus

Probab=99.35  E-value=8e-13  Score=116.85  Aligned_cols=98  Identities=28%  Similarity=0.489  Sum_probs=82.7

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee----------C-----CeEEEEEEEeecC
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE----------N-----NKVSHYIINKITN   68 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~----------~-----~~v~h~~I~~~~~   68 (288)
                      +|....+.-||.-+|+|++|..||+++.+ |+||||+|.+..|.|-|.++.          +     .-|+||.|+....
T Consensus       205 kFV~DTSKyWYKP~isREQAIalLrdkeP-GtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spk  283 (483)
T KOG1930|consen  205 LFVKDTSKYWYKPNISREQAIALLRDKEP-GTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPK  283 (483)
T ss_pred             eeeecccccccCCCCCHHHHHHHhhcCCC-CeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCC
Confidence            45667788999999999999999999988 999999999999999999994          1     3489999998776


Q ss_pred             CCcceEEeeC----CcccCChhhhhhhheecccC-CCccccccc
Q psy5076          69 TEQQTCYKIG----DKTFSDLPSLLAFYKVHYLD-TSPLIKPAT  107 (288)
Q Consensus        69 ~~~~~~~~~~----~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~  107 (288)
                      |     ..+.    +..|.||..||..|...+|. .|+|..|-.
T Consensus       284 G-----VkLKGC~nEP~FGSLSALV~QHSIt~LALPckL~iP~r  322 (483)
T KOG1930|consen  284 G-----VKLKGCDNEPVFGSLSALVYQHSITALALPCKLVIPDR  322 (483)
T ss_pred             c-----eeccCCCCCCccchhHHHHhhccchhhhcceeEeccCC
Confidence            6     6664    46999999999999888876 666665533

>KOG2070|consensus

Probab=99.29  E-value=2.3e-12  Score=116.14  Aligned_cols=61  Identities=36%  Similarity=0.592  Sum_probs=56.2

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      |..++|.|.|  .....+||+|.+||+|.|....++|||+|.++|++||||+|||..+..+.+
T Consensus        17 pLvvrAkf~F--~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~e~p   77 (661)
T KOG2070|consen   17 PLVVRAKFNF--QGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKSEKP   77 (661)
T ss_pred             ceEEEEEeec--ccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhhcCC
Confidence            7789999999  567777999999999999999999999999999999999999999986655

>KOG2996|consensus

Probab=99.26  E-value=7.6e-12  Score=114.83  Aligned_cols=57  Identities=33%  Similarity=0.438  Sum_probs=47.8

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      +..|+.+|+.-+.+..||||++||+|.+..+.  |.|||.|+.+|+.||||++||++-.
T Consensus       805 ~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  805 VGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             eeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence            44555555547888889999999999999876  5799999999999999999998754

>KOG0194|consensus

Probab=99.23  E-value=3.1e-11  Score=111.92  Aligned_cols=90  Identities=31%  Similarity=0.611  Sum_probs=75.4

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCc---e-EEEEeeC--CeEEEEEEEeecCCCcceEEeeC-CcccC
Q psy5076          11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN---Y-VLCVKEN--NKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (288)
Q Consensus        11 ~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~---~-~lsv~~~--~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (288)
                      ++||||.|.|++++.+|..   +|+||||.+....+.   + +|||...  .+++||.|....+.     |++. ...|+
T Consensus        49 ~~~yHG~l~red~~~lL~~---~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~-----~~~~~~~~F~  120 (474)
T KOG0194|consen   49 LPYYHGLLPREDAEKLLKN---DGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNL-----FFFEGLRKFP  120 (474)
T ss_pred             CccccccccHhHHHHHhCC---CCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCe-----eEEeccccCC
Confidence            6999999999999999984   399999999865543   3 9999985  89999999987664     5544 68999


Q ss_pred             ChhhhhhhheecccC----CCcccccccc
Q psy5076          84 DLPSLLAFYKVHYLD----TSPLIKPATK  108 (288)
Q Consensus        84 sl~~LV~~y~~~~l~----~~~l~~p~~~  108 (288)
                      ++.+||.||..+.+.    ...|+.|+++
T Consensus       121 si~~li~~~~~~~~~~~~~~~~L~~PI~r  149 (474)
T KOG0194|consen  121 TISELVNYYKFSKLEITGKNFFLKRPIPR  149 (474)
T ss_pred             cHHHHHHHHHhcccceeccceeecccccc
Confidence            999999999998875    3458888887

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.22  E-value=2.7e-11  Score=79.77  Aligned_cols=53  Identities=40%  Similarity=0.852  Sum_probs=47.1

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEE-EecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVV-SKDEEHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl-~~~~~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      +++|+++|.+..+++|+|++||+|.|+ +...++||.++. +|+.||||.+||++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~-~g~~G~~P~~~v~~   54 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGEN-NGRRGWFPSSYVEE   54 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEE-TTEEEEEEGGGEEE
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEE-CCcEEEEcHHHEEE
Confidence            478999999999999999999999999 777789999996 99999999999986

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG3632|consensus

Probab=99.14  E-value=9.1e-11  Score=113.22  Aligned_cols=157  Identities=22%  Similarity=0.307  Sum_probs=104.0

Q ss_pred             eeEEeeeccCCCC--------CCCCCCCCCCCEEEEEEe-cCCCeEEEEeCCCcEEEEeCCCeEecccCCccc--ccccC
Q psy5076         110 IEKVIAKYDFDGN--------DPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQKYSEGMSIL--SLRNL  178 (288)
Q Consensus       110 ~~~~~a~~~~~~~--------~~~eLs~~~g~~i~vl~~-~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~--~~~~~  178 (288)
                      ...++|+|||.+-        ...||.|++|++|.|+.. +.+|++.|+ .+++.|+||.|+|.++.-+....  -..++
T Consensus      1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE-~ngr~GlIPcNmvae~~vd~eq~~~r~rqG 1216 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGE-LNGRRGLIPCNMVAEQPVDNEQTDRRWRQG 1216 (1335)
T ss_pred             ceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecc-cccccccccccccccccCCcHHHHHHHHhc
Confidence            5678999999863        457899999999999874 567899999 99999999999998876553100  01100


Q ss_pred             C-CC-CCCCCCCCCCCccccccccCCCCCeEEEEEEcccCCCCCCC-----eeeecCCCEEEEEEeC-CCCeeEEEeCCe
Q psy5076         179 H-LD-SSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKT-----ALKLEIGDIIKVTKTN-INGQWEGELNGK  250 (288)
Q Consensus       179 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----eLs~~~g~~v~v~~~~-~~~w~~~~~~~~  250 (288)
                      . |. ..-...-++.-.... ..+....+....+.+||+++...++     +|.|..||+|.|..+. ++|++.|+++|+
T Consensus      1217 ~lPsv~~~e~~~gs~~s~g~-~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngq 1295 (1335)
T KOG3632|consen 1217 LLPSVPTEEMRKGSAFSDGQ-QKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQ 1295 (1335)
T ss_pred             cCCCCCchhhhcccccCCCC-ccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCc
Confidence            0 00 000000000000000 0000001224677899987654433     8999999999999876 468889999999


Q ss_pred             eeEecCCcEEEcCCCCCc
Q psy5076         251 TGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       251 ~G~~P~~~v~~~~~~~~~  268 (288)
                      .|++|++|++....+...
T Consensus      1296 kglvpsnfle~p~~e~~~ 1313 (1335)
T KOG3632|consen 1296 KGLVPSNFLEAPNAEKTS 1313 (1335)
T ss_pred             cCccccccccCCCccccc
Confidence            999999999988555543

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.12  E-value=1.1e-10  Score=74.52  Aligned_cols=46  Identities=33%  Similarity=0.465  Sum_probs=40.3

Q ss_pred             EEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--CeeeEecC
Q psy5076         209 RVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPF  256 (288)
Q Consensus       209 ~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~~~G~~P~  256 (288)
                      +|+|+|  .+..++||+|++||.|.|+++.+++||.++..  ++.||||+
T Consensus         1 ~Alydf--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDF--DAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCB--ETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeee--CCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            589999  56778899999999999999999999999885  69999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG0790|consensus

Probab=99.11  E-value=8.9e-11  Score=105.02  Aligned_cols=92  Identities=27%  Similarity=0.513  Sum_probs=79.2

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEee-CCcccCChhhh
Q psy5076          10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLPSL   88 (288)
Q Consensus        10 ~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~sl~~L   88 (288)
                      +..|||..|+-.+||.||+....||.||.|.|.+.+|.|+|+++.+++|.|++|...+..     |.+ ++..|.++.||
T Consensus         3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~-----~~l~~gekfat~~EL   77 (600)
T KOG0790|consen    3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDF-----YDLYGGEKFATLAEL   77 (600)
T ss_pred             chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecCcc-----ccccCCccccchHHH
Confidence            568999999999999999998888999999999999999999999999999999876543     555 47899999999


Q ss_pred             hhhheecccC-------CCcccccc
Q psy5076          89 LAFYKVHYLD-------TSPLIKPA  106 (288)
Q Consensus        89 V~~y~~~~l~-------~~~l~~p~  106 (288)
                      |+||+.+.-.       ...|++|+
T Consensus        78 vqyyme~~~~lkekng~~ielK~pl  102 (600)
T KOG0790|consen   78 VQYYMEHHGQLKEKNGDVIELKYPL  102 (600)
T ss_pred             HHHHHhhhHHHHhcCCCEEEecCCC
Confidence            9999998721       23566664

>smart00326 SH3 Src homology 3 domains

Probab=99.07  E-value=4e-10  Score=74.38  Aligned_cols=55  Identities=38%  Similarity=0.537  Sum_probs=48.8

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC-CeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~-~~~G~~P~~~v~~~  262 (288)
                      .+++|+++|.  +..+++|+|.+||.|.+++..+++||.++.. ++.||||.+|++.+
T Consensus         3 ~~~~a~~~~~--~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~   58 (58)
T smart00326        3 PQVRALYDYT--AQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI   58 (58)
T ss_pred             cEEEEeeeeC--CCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence            3689999995  5677799999999999999989999999887 89999999999864

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG3601|consensus

Probab=99.07  E-value=1.1e-10  Score=94.98  Aligned_cols=179  Identities=16%  Similarity=0.070  Sum_probs=117.6

Q ss_pred             cCChhhhhhhheecccC--CCccc-ccccceeeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEE
Q psy5076          82 FSDLPSLLAFYKVHYLD--TSPLI-KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI  158 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~--~~~l~-~p~~~~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~v  158 (288)
                      =.++.|.|..|...-.+  ...-. .+--+..+.+.+.+++.......+..+.|+.+..+.+..++|..+. .+...|.+
T Consensus        27 ~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgs-vr~~d~vq  105 (222)
T KOG3601|consen   27 ILNMEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGS-VRFPDGVQ  105 (222)
T ss_pred             ecchHHhhhhhhHhhcCccccCcccccccccccceecccccchhhhhhhccCcchhhhhhhhcCccccccc-ccCCCCce
Confidence            34566777777654333  11111 1111224567788888888888888899999999998999999998 88899999


Q ss_pred             eCCCeEecccCCcccc--cccCCCCCCCCCCC-CCCCccccccccCC--------CCCeEEEEEEcccCCCCCCCeeeec
Q psy5076         159 PVPYVQKYSEGMSILS--LRNLHLDSSSHHVP-QQQTTPVRKTHLEV--------KLPAFARVKQVRVPNAYDKTALKLE  227 (288)
Q Consensus       159 P~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~eLs~~  227 (288)
                      +.++|.+......-..  ..+.+|-..-.... ......+.+.....        ....|.+++|+|  +.+.+.+|.|.
T Consensus       106 hfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df--~~~pp~ql~f~  183 (222)
T KOG3601|consen  106 HFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDF--QPQPPGQLAFR  183 (222)
T ss_pred             eccccccCccccccchhhccCCCCCcccCcccccccceeeeecccccccccCCCCccchhhhhcCCC--CCCCchhhccc
Confidence            9999976554422111  11111111111000 00111111111110        013478999999  56888899999


Q ss_pred             CCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         228 IGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       228 ~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      +||++.|+...+.-||.|++.|+.|+||++|+....
T Consensus       184 ~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~d  219 (222)
T KOG3601|consen  184 RGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPSD  219 (222)
T ss_pred             cCCcceeecCCCcchhhccccCceeeecCccccccc
Confidence            999999999999999999999999999999997654

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.05  E-value=3.7e-10  Score=72.12  Aligned_cols=47  Identities=49%  Similarity=0.961  Sum_probs=42.5

Q ss_pred             eeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC-CcEEEEeC
Q psy5076         114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPV  160 (288)
Q Consensus       114 ~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~-g~~G~vP~  160 (288)
                      +|+|+|.+...++|+|++||.|.|+++.+++||.+++.. ++.|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            589999999999999999999999999999999999755 79999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.02  E-value=6.5e-10  Score=72.33  Aligned_cols=51  Identities=41%  Similarity=0.607  Sum_probs=45.4

Q ss_pred             EEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCC-eeeEecCCcEE
Q psy5076         208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG-KTGHFPFTHVE  260 (288)
Q Consensus       208 ~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~-~~G~~P~~~v~  260 (288)
                      ++++++|  .+..+++|+|.+||.|.+++..++|||.++..+ +.||||..||+
T Consensus         2 ~~a~~~~--~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDY--DARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEee--CCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            6789999  456667999999999999999889999998866 99999999985

>KOG2199|consensus

Probab=99.01  E-value=6.3e-11  Score=104.48  Aligned_cols=55  Identities=27%  Similarity=0.315  Sum_probs=51.7

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      .+||||||  .+.+.+||+|.+||+|.|++..+..||.|.+.+..|+||+|||...-
T Consensus       217 kVRALYDF--eAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  217 KVRALYDF--EAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL  271 (462)
T ss_pred             hhhhhhcc--cccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence            59999999  78888999999999999999999999999999999999999998765

>KOG2070|consensus

Probab=98.97  E-value=2.1e-10  Score=103.70  Aligned_cols=57  Identities=33%  Similarity=0.746  Sum_probs=53.2

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      -.++|.|.|.+.+.+||+|.+||+|.|.+..++|||.|. .+|++||||++||.+++.
T Consensus        18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGT-lng~TGWFPsnYV~eik~   74 (661)
T KOG2070|consen   18 LVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGT-LNGRTGWFPSNYVREIKS   74 (661)
T ss_pred             eEEEEEeecccCCCceeccccCCEEEEEEeccCcceecc-ccCccCccchHHHHHHhh
Confidence            357899999999999999999999999999999999999 999999999999988763

>KOG1118|consensus

Probab=98.94  E-value=8e-10  Score=94.54  Aligned_cols=59  Identities=27%  Similarity=0.397  Sum_probs=52.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      ...|+++|||.|  +..+||.|.+||+|.++...|.+||+|...|.+|+||.|||+.+.+-
T Consensus       306 ~p~cralYdFep--enEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvpl  364 (366)
T KOG1118|consen  306 QPCCRALYDFEP--ENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVPL  364 (366)
T ss_pred             chhheeeeccCC--CCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEeccC
Confidence            347999999965  66669999999999999999999999999999999999999988653

>smart00326 SH3 Src homology 3 domains

Probab=98.92  E-value=4.4e-09  Score=69.29  Aligned_cols=55  Identities=40%  Similarity=0.830  Sum_probs=50.0

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      ..++++++|.+...++|+|++||.|.++....++||.+++.+++.||||.+|++.
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~   57 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE   57 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence            4578999999999999999999999999988899999996659999999999875

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG0162|consensus

Probab=98.91  E-value=1.6e-09  Score=102.07  Aligned_cols=55  Identities=31%  Similarity=0.466  Sum_probs=51.1

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      ..++|+|+|  .+++.+||+|.+||+|.++.+...|||.|+.+|+.||||.+||+++
T Consensus      1052 p~~~A~Y~y--~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDY--PGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred             cceeeeccC--CCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence            479999999  5678899999999999999999999999999999999999999763

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=98.89  E-value=5.5e-09  Score=67.88  Aligned_cols=52  Identities=44%  Similarity=0.926  Sum_probs=47.3

Q ss_pred             EeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeE
Q psy5076         113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ  164 (288)
Q Consensus       113 ~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~  164 (288)
                      +.++++|.+...++|+|.+||.+.++....++||.+++..++.||||.+|++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            5789999999999999999999999998788999999665699999999985

>KOG4225|consensus

Probab=98.89  E-value=1.6e-09  Score=96.73  Aligned_cols=56  Identities=29%  Similarity=0.395  Sum_probs=53.2

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      .++|+|+|  .++...||.|.+||+|.|+++.|..|++|..+|+.|+||++||+++..
T Consensus       232 ~aralf~F--~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~  287 (489)
T KOG4225|consen  232 AARALFDF--EAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP  287 (489)
T ss_pred             hhhheecc--ccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence            38999999  678888999999999999999999999999999999999999999987

>KOG2199|consensus

Probab=98.85  E-value=6.3e-10  Score=98.26  Aligned_cols=56  Identities=30%  Similarity=0.705  Sum_probs=51.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ...++|+|||++...+||+|++||+|.|++..+.+||.|. ..+..|+||+|||...
T Consensus       215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~-~~~~~GlFPsnfVT~~  270 (462)
T KOG2199|consen  215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGE-NHRGIGLFPSNFVTAD  270 (462)
T ss_pred             chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccc-cCCcccccchhhhhhh
Confidence            4579999999999999999999999999999999999999 7789999999999753

>KOG1118|consensus

Probab=98.59  E-value=2.2e-08  Score=85.86  Aligned_cols=58  Identities=29%  Similarity=0.602  Sum_probs=53.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...|+|+|+|++.+.+||.|+.||+|.++..-+.+||.|. ..|..|+||.|||+.+-+
T Consensus       306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~-~~g~sG~FPvnYv~vlvp  363 (366)
T KOG1118|consen  306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGE-KHGESGMFPVNYVEVLVP  363 (366)
T ss_pred             chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhhe-ecCccCccccceeEEecc
Confidence            3457899999999999999999999999999999999999 888999999999998754

>KOG2546|consensus

Probab=98.55  E-value=2.7e-08  Score=88.72  Aligned_cols=55  Identities=31%  Similarity=0.314  Sum_probs=50.4

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      .+.++|||  .+...+||+|.+|.+|.|+++.++|||+|-.++.+|+||-|||+.+.
T Consensus       425 kVv~iydy--~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  425 KVVAIYDY--TADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHhhccc--ccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence            36789999  56777799999999999999999999999999999999999998874

>KOG3751|consensus

Probab=98.54  E-value=3.7e-08  Score=90.05  Aligned_cols=91  Identities=29%  Similarity=0.520  Sum_probs=76.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC--Ccc
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKT   81 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~~   81 (288)
                      +..|.++.||||.|+|+++..++++ +-.+|.||+|+|.+.+..|++++.+..+|+||+|.-.+...... |...  ...
T Consensus       513 ~~~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~-~t~~~g~t~  591 (622)
T KOG3751|consen  513 QAIHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTF-FTLDDGPTK  591 (622)
T ss_pred             hhhcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCcee-eccCCCCcc
Confidence            5578899999999999999998876 67889999999999999999999999999999999866542222 3333  368


Q ss_pred             cCChhhhhhhheecc
Q psy5076          82 FSDLPSLLAFYKVHY   96 (288)
Q Consensus        82 F~sl~~LV~~y~~~~   96 (288)
                      |.++..||++|+-+.
T Consensus       592 ~sd~~ql~~~~ql~k  606 (622)
T KOG3751|consen  592 FSDLIQLVEFYQLNK  606 (622)
T ss_pred             ccccccccchhhcCC
Confidence            999999999998764

>KOG2856|consensus

Probab=98.51  E-value=2.2e-08  Score=87.74  Aligned_cols=55  Identities=24%  Similarity=0.359  Sum_probs=47.8

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEEeC-CeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELN-GKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~~~-~~~G~~P~~~v~~~  262 (288)
                      ..++|||||.  .++.+||+|++||.+..++..| .||+.|+++ |+.|++|+|||+.+
T Consensus       415 v~vraLYDY~--gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYA--GQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccC--cccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            3589999995  4667799999999999987766 589899998 99999999999875

>KOG0162|consensus

Probab=98.51  E-value=6.7e-08  Score=91.48  Aligned_cols=54  Identities=37%  Similarity=0.775  Sum_probs=51.4

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      +.+.|+|+|.+++.+||+|++|++|.++.++-.|||.|+ .+|+.||||.+||.+
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk-~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGK-LNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhc-cCCcccccccccccc
Confidence            568999999999999999999999999999999999999 999999999999975

>KOG4792|consensus

Probab=98.37  E-value=1.5e-07  Score=77.43  Aligned_cols=61  Identities=20%  Similarity=0.331  Sum_probs=52.6

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++++|||.  ..+..+|-|++||++.+++|....||..+. .|+.|.+|..||+......+
T Consensus       124 ~~~vr~~fdF~--G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~  185 (293)
T KOG4792|consen  124 AEYVRALFDFN--GNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASA  185 (293)
T ss_pred             hhheeeeeccC--CCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhc
Confidence            45899999994  566669999999999999999999997655 58999999999999876663

>KOG2856|consensus

Probab=98.21  E-value=3.2e-07  Score=80.57  Aligned_cols=56  Identities=36%  Similarity=0.609  Sum_probs=48.8

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+|||.++..+||+|++||.+..+... +-||..|+...|+.|++|+|||+-+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            4689999999999999999999999887754 5699999955599999999999754

>KOG2546|consensus

Probab=98.13  E-value=1.2e-06  Score=78.46  Aligned_cols=56  Identities=32%  Similarity=0.676  Sum_probs=52.5

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      .++++|+|.+...+||+|..|-+|.|+.+.+++||.|. .++.+|+||.|||+.+..
T Consensus       425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV-~~~VTglFpgnyve~~~~  480 (483)
T KOG2546|consen  425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGV-QDGVTGLFPGNYVEPLKA  480 (483)
T ss_pred             HHHhhcccccccccccccccccEEEEEEecCCcchhhe-ecCcceeccCcccccccc
Confidence            47899999999999999999999999999999999999 899999999999988754

>KOG0515|consensus

Probab=98.11  E-value=1.2e-06  Score=80.53  Aligned_cols=57  Identities=33%  Similarity=0.729  Sum_probs=50.3

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC---CCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE---EHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~---~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ..+.|++||+++..+||+|+.||.++|+++++   .+||.++ .+|+.|+||.||+-.+..
T Consensus       684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~-lng~eGyVPRnylgLyPr  743 (752)
T KOG0515|consen  684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWAR-LNGEEGYVPRNYLGLYPR  743 (752)
T ss_pred             ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHh-hcCcccccchhhhhcCcc
Confidence            45789999999999999999999999999854   4799998 899999999999865543

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=98.10  E-value=2.9e-05  Score=65.37  Aligned_cols=81  Identities=16%  Similarity=0.220  Sum_probs=61.9

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee-CCeEEEEEEEeecCCC---cceEEeeCCcccCChhh
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIINKITNTE---QQTCYKIGDKTFSDLPS   87 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v~h~~I~~~~~~~---~~~~~~~~~~~F~sl~~   87 (288)
                      |-|+ +++-.+|+++|..... |.+|||+|+......+++++. ++...|+-|...+..+   .+..+.|++..|.+|.|
T Consensus        39 P~F~-n~~~~qAe~~L~~~~~-Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~~~~yeDLDE  116 (220)
T PF14633_consen   39 PLFK-NFNYKQAEEYLADQDV-GEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIGGEEYEDLDE  116 (220)
T ss_dssp             TTEE-SS-HHHHHHHHCCS-T-T-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEETTEEESSHHH
T ss_pred             CCcc-CCCHHHHHHHHhcCCC-CCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEECCeEECCHHH
Confidence            5566 9999999999998777 999999999877778999996 5666799998765322   22337788899999999


Q ss_pred             hhhhhee
Q psy5076          88 LLAFYKV   94 (288)
Q Consensus        88 LV~~y~~   94 (288)
                      ||..|-.
T Consensus       117 ii~r~V~  123 (220)
T PF14633_consen  117 IIARHVE  123 (220)
T ss_dssp             HHHHCHH
T ss_pred             HHHHHHH
Confidence            9998865

>KOG3655|consensus

Probab=98.08  E-value=9.3e-07  Score=80.35  Aligned_cols=56  Identities=32%  Similarity=0.481  Sum_probs=50.0

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFI  262 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~  262 (288)
                      +..++|+|||  +|-+..||+|..+++|.++...+.|||.|.. .|..|+||+|||+.+
T Consensus       427 ~q~A~A~~dy--qAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  427 PQTARALYDY--QAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCCccccccc--cccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            3468899999  7788889999999999999999999999887 478999999999876

>KOG3875|consensus

Probab=98.04  E-value=5.8e-07  Score=77.34  Aligned_cols=59  Identities=25%  Similarity=0.340  Sum_probs=48.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-----CCeeEE-Ee-CCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-----NGQWEG-EL-NGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-----~~w~~~-~~-~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|||  .+.++.||+|++||.+.|..|.+     +.||.. .. ++..||||.|||+++..+.
T Consensus       269 ~~arA~YdF--~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq~  334 (362)
T KOG3875|consen  269 EFARALYDF--VARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQP  334 (362)
T ss_pred             HHHHHHhhh--hcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcCC
Confidence            478999999  67888899999999999988753     467754 44 5789999999999997733

>KOG3697|consensus

Probab=98.01  E-value=6.4e-06  Score=70.29  Aligned_cols=92  Identities=17%  Similarity=0.239  Sum_probs=71.2

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCC----------------------------------------------
Q psy5076           9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSN----------------------------------------------   42 (288)
Q Consensus         9 ~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~----------------------------------------------   42 (288)
                      -.++||||.+++++++..|+-   +|.|++|.+.                                              
T Consensus       199 ~k~pp~~g~l~~~~~q~~l~~---~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~  275 (345)
T KOG3697|consen  199 SKMPPPGGFLDTRLKQRPLAP---DAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDE  275 (345)
T ss_pred             ccCCCCCCccchhhhhccCCc---ccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhccc
Confidence            346999999999999999963   3788877543                                              


Q ss_pred             -CCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhhhhhhheecccC------CCcccccccc
Q psy5076          43 -TILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD------TSPLIKPATK  108 (288)
Q Consensus        43 -~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~------~~~l~~p~~~  108 (288)
                       +.+|+|+|+-...++.+|..+.--++-     ....+..|+|+..||+|+..+.|.      ..+|.+|+.+
T Consensus       276 ~~~~gqyvltgl~~~~~khlllvdpegv-----vrtkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r  343 (345)
T KOG3697|consen  276 TTTPGQYVLTGLQSGQPKHLLLVDPEGV-----VRTKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVER  343 (345)
T ss_pred             cCCCccEEEecccCCCcceEEEECCccc-----eecccchhhHHHHHHHHhhhccCceecCcchhhhhCcccc
Confidence             456889999888999999887643322     444578999999999999999885      2467788765

>KOG1702|consensus

Probab=97.98  E-value=7.8e-06  Score=66.41  Aligned_cols=54  Identities=26%  Similarity=0.298  Sum_probs=48.2

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~  262 (288)
                      ..+|.|||  .|++.+|++|.-||.|..+...++||..|.+  .|.+|..|+||++-+
T Consensus       209 tyra~ydy--saqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  209 TYRAFYDY--SAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             cchhhccC--cccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            58899999  7889999999999999999999999987755  689999999999854

>KOG0515|consensus

Probab=97.92  E-value=4.1e-06  Score=77.13  Aligned_cols=56  Identities=21%  Similarity=0.292  Sum_probs=47.5

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC---CCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI---NGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~---~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      .+-|++||  .++..+||+|.+||.+.|+++.|   -+||-++++|+.|+||.||+-.+..
T Consensus       685 ~vYAlwdY--eaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPr  743 (752)
T KOG0515|consen  685 VVYALWDY--EAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPR  743 (752)
T ss_pred             eeEEeecc--cccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCcc
Confidence            46789999  67888899999999999999854   4677677999999999999876543

>KOG1843|consensus

Probab=97.89  E-value=6.1e-06  Score=73.67  Aligned_cols=54  Identities=30%  Similarity=0.405  Sum_probs=48.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC--CCeeEEEeCCeeeEecCCcEEE
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEF  261 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~--~~w~~~~~~~~~G~~P~~~v~~  261 (288)
                      -.+.++|+|  ..+.+++|+|++||+|.++++.+  +.||.++.++..|+||+|||..
T Consensus       417 n~a~a~ysf--age~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  417 NIATALYSF--AGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             ceeeeeehh--ccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            368999999  56778899999999999999875  6999999999999999999964

>KOG3875|consensus

Probab=97.86  E-value=3.9e-06  Score=72.37  Aligned_cols=58  Identities=34%  Similarity=0.586  Sum_probs=49.9

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC-----CCeEEEEeC-CCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-----EHWWTAQNI-SGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-----~~ww~~~~~-~g~~G~vP~~~v~~~~~  168 (288)
                      ..++|+|||.+.++.||+|++||.+.|+.+++     ..||..... .+.+||||.|||+.+..
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            45789999999999999999999999988754     458887755 67899999999998876

>KOG1702|consensus

Probab=97.84  E-value=1.2e-05  Score=65.31  Aligned_cols=56  Identities=23%  Similarity=0.468  Sum_probs=49.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEe
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQK  165 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~  165 (288)
                      ...++|.|||.+++.++++|..||.|..++.-++||..|.. .+|.+|+.|+||++.
T Consensus       207 gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~  263 (264)
T KOG1702|consen  207 GKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF  263 (264)
T ss_pred             CccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence            35789999999999999999999999888888889977764 678999999999985

>KOG3655|consensus

Probab=97.78  E-value=8.1e-06  Score=74.37  Aligned_cols=57  Identities=32%  Similarity=0.674  Sum_probs=52.1

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      .+.++|+|+|.+.++.+++|..++.|.++...+.|||.|.-.+|+.|+||+|||+.+
T Consensus       427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            346789999999999999999999999999999999999877899999999999754

>KOG4773|consensus

Probab=97.76  E-value=4.7e-06  Score=72.97  Aligned_cols=68  Identities=18%  Similarity=0.080  Sum_probs=59.1

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCccCCCCCCc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGD  276 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~~~~~~~~  276 (288)
                      .++++++|.  .....||.|.+|+++.++.+.+.+||.|...+.+||+|..|++++++..+++..+++..
T Consensus       177 ~~~a~~df~--gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpeeD~~~nw~r  244 (386)
T KOG4773|consen  177 RAEASFDFP--GNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPEEDAGTNWLR  244 (386)
T ss_pred             HHHhhccCC--CCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCccccCCCCccc
Confidence            467899994  45556999999999999999999999999999999999999999988888777766643

>KOG2222|consensus

Probab=97.75  E-value=2.8e-06  Score=77.28  Aligned_cols=59  Identities=29%  Similarity=0.410  Sum_probs=52.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..++|+.||  ...+.+||.|++.|+|.+++.-+..+|.|+++|-+||||+.||+.+..-.
T Consensus       549 krakal~df--~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellder~  607 (848)
T KOG2222|consen  549 KRAKALHDF--AREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDERG  607 (848)
T ss_pred             HHHHHHhhh--hhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHhcc
Confidence            357899999  66778899999999999999999999999999999999999998875543

>KOG3523|consensus

Probab=97.75  E-value=3.1e-06  Score=79.03  Aligned_cols=58  Identities=29%  Similarity=0.440  Sum_probs=51.5

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~  266 (288)
                      -+.+...|  .+..++||+|+.+|+|.|+.+.++||++|..  +|..||||..|++.|.+.+
T Consensus       610 Qv~~~~sy--~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~  669 (695)
T KOG3523|consen  610 QVQCVHSY--KAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNPH  669 (695)
T ss_pred             hhheeecc--ccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCHH
Confidence            47788889  6788889999999999999999999999854  5889999999999987765

>KOG3632|consensus

Probab=97.70  E-value=3.1e-05  Score=75.93  Aligned_cols=60  Identities=28%  Similarity=0.383  Sum_probs=51.2

Q ss_pred             EEEEEEcccCCCCCCC------eeeecCCCEEEEEE-eCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         207 FARVKQVRVPNAYDKT------ALKLEIGDIIKVTK-TNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~------eLs~~~g~~v~v~~-~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+.|+|||++....++      ||.|++|++|.|+. +.-+|++.|+++++.|++|+|+|.++.-.+
T Consensus      1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~ 1206 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDN 1206 (1335)
T ss_pred             eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCc
Confidence            5789999997654433      89999999999996 445799999999999999999999986665

>KOG4278|consensus

Probab=97.69  E-value=4.4e-05  Score=72.42  Aligned_cols=60  Identities=17%  Similarity=0.138  Sum_probs=48.5

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      |-++.|||||  -+...+.|++.+||.+.|+.-. +++|.+.+..+..||||+||+.++....
T Consensus        90 pNLFVALYDF--vasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyItPvNSLe  150 (1157)
T KOG4278|consen   90 PNLFVALYDF--VASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYITPVNSLE  150 (1157)
T ss_pred             CceeEeeeee--eccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccccccchh
Confidence            4479999999  5677779999999999999866 5567777665455999999999986544

>KOG1843|consensus

Probab=97.65  E-value=2.5e-05  Score=69.82  Aligned_cols=55  Identities=36%  Similarity=0.758  Sum_probs=49.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC--CCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~--~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      ...+.++++|..+...+++|++||+|.++.+.+  ++||.++ .+++.|+||+|||+.
T Consensus       416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr-~~~~egifPanyv~~  472 (473)
T KOG1843|consen  416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGR-GNGYEGIFPANYVSL  472 (473)
T ss_pred             cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhh-ccccccccccceecc
Confidence            347899999999999999999999999999875  5899999 999999999999863

>KOG4575|consensus

Probab=97.51  E-value=0.0001  Score=69.32  Aligned_cols=58  Identities=24%  Similarity=0.349  Sum_probs=48.6

Q ss_pred             CCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCcEEEc
Q psy5076         203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFI  262 (288)
Q Consensus       203 ~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~  262 (288)
                      ++|++++|+|.+  ..+..++|.|..||++.+++..++.||.+...  +-.|+||.|||..+
T Consensus         6 q~p~~vrA~y~w--~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL   65 (874)
T KOG4575|consen    6 QLPCMVRALYAW--PGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL   65 (874)
T ss_pred             CCCceEEeeccC--CCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence            458899999998  56777799999999999999988888876543  56799999999655

>KOG2528|consensus

Probab=97.37  E-value=0.00012  Score=66.30  Aligned_cols=78  Identities=23%  Similarity=0.230  Sum_probs=58.9

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEE-eCCCCeeEEEe-CCeeeEecCCcEEEcCCCCCccCC-CCCCccccCCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTK-TNINGQWEGEL-NGKTGHFPFTHVEFIPTNETSVET-NGNGDIHNSTPK  283 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~-~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~~~~~~~-~~~~~~~~~~~~  283 (288)
                      .+|++|||  .+....||++..||++.+.. ....|||+|.. .|.+|+||+.||+.+....+.+.. .+...+-.+++.
T Consensus         4 k~RamyDf--~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~sSs~As~p~~v~sl~~p   81 (490)
T KOG2528|consen    4 KARAMYDF--QSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAVASSSLASIPFAVFSLTDP   81 (490)
T ss_pred             chhhhcch--hhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccccchhccCCCCCCcccccCc
Confidence            58899999  55678899999999999985 45789999865 689999999999999866654433 333444555555


Q ss_pred             CCC
Q psy5076         284 TET  286 (288)
Q Consensus       284 ~~~  286 (288)
                      ++.
T Consensus        82 ~sa   84 (490)
T KOG2528|consen   82 TSA   84 (490)
T ss_pred             ccC
Confidence            554

>KOG3725|consensus

Probab=97.28  E-value=7.6e-05  Score=62.94  Aligned_cols=54  Identities=30%  Similarity=0.250  Sum_probs=48.4

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      .++++|||  .+..+.||++..+|+|.|.+..  |.+|..|+.+++.|-+|..|++.+
T Consensus       319 kArVlyDY--dAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  319 KARVLYDY--DAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             ceeeeecc--cccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence            58999999  6778889999999999998865  789999999999999999999764

>KOG4566|consensus

Probab=97.28  E-value=0.00047  Score=59.23  Aligned_cols=88  Identities=25%  Similarity=0.396  Sum_probs=69.9

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-----
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-----   78 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-----   78 (288)
                      ++..+....||+|.+++++|+..|...+. |+||||+|+.....+.|+++....-+..+|......     |..+     
T Consensus        45 s~~~~~~~g~~w~~~~~~~~~~~l~~~p~-~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~s-----fr~ds~~~~  118 (258)
T KOG4566|consen   45 SLSLLDSSGHYWGLETANEAELCLGQEPR-GTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSS-----FRLDSSHRH  118 (258)
T ss_pred             eeeccccCCcccccccchhHHHhhcCCCc-cceeeecCcCccccceeEeeeccCCCCccccccccc-----eeccccccc
Confidence            45567778999999999999999988766 999999999878788999998777777777765533     4432     


Q ss_pred             -C--cccCChhhhhhhheeccc
Q psy5076          79 -D--KTFSDLPSLLAFYKVHYL   97 (288)
Q Consensus        79 -~--~~F~sl~~LV~~y~~~~l   97 (288)
                       .  ..|+.+..|+.+|+....
T Consensus       119 ~~pl~~~e~~~~~~~~y~~~~~  140 (258)
T KOG4566|consen  119 TPPLISFEDVEVLIHHYRQSRK  140 (258)
T ss_pred             CCCcccChhHHHHHHhhhhhhh
Confidence             2  489999999999966443

>KOG3557|consensus

Probab=97.23  E-value=0.00014  Score=68.74  Aligned_cols=60  Identities=27%  Similarity=0.576  Sum_probs=53.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM  170 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~  170 (288)
                      ...+.+.|+|.+.+..||++.+|+++.|+. ++..||.+++..|+.||||.|.+..+....
T Consensus       500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~-d~R~WW~~kn~~G~~GyvP~nIL~~~~~~~  559 (721)
T KOG3557|consen  500 KKWVLVLYDFQARNSSELSVKKGEVLEVLD-DGRKWWKVKNGHGRAGYVPSNILAPLQPEH  559 (721)
T ss_pred             ceeeeeehhhhcccchhhhhhhhhhhhhhh-ccccceeccCccCCCCCcchhhhccCCCcc
Confidence            457889999999999999999999999998 567899999999999999999998877653

>KOG3523|consensus

Probab=97.06  E-value=6.7e-05  Score=70.33  Aligned_cols=58  Identities=24%  Similarity=0.528  Sum_probs=52.4

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      .+.+...|.+..+++|++..+|++.|+++..+||..|.. .+|..||||.+|++++...
T Consensus       610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~  668 (695)
T KOG3523|consen  610 QVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNP  668 (695)
T ss_pred             hhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCH
Confidence            366778899999999999999999999999999999976 6789999999999988765

>KOG4773|consensus

Probab=96.84  E-value=0.0001  Score=64.76  Aligned_cols=56  Identities=27%  Similarity=0.582  Sum_probs=51.5

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      .+.++++|.+....||.|.+|+++.++.+++.+||.|+ ..+.+||+|.+|+..+..
T Consensus       177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk-~R~~~g~yp~sF~~~ld~  232 (386)
T KOG4773|consen  177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGK-VRGLTGYYPDSFVKQLDD  232 (386)
T ss_pred             HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeee-eccccccccHHhhhhhcc
Confidence            46688999999999999999999999999999999999 899999999999988844

>KOG3557|consensus

Probab=96.79  E-value=0.00051  Score=65.02  Aligned_cols=62  Identities=16%  Similarity=0.255  Sum_probs=52.7

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCCCCCcc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNETSV  269 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~~~~~  269 (288)
                      ..++.++|||  .+....||++.+||++.|+.. .-+||.++. -|+.||||.|.+..+...+...
T Consensus       500 ~k~~~~~Ydf--~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~~~~~  562 (721)
T KOG3557|consen  500 KKWVLVLYDF--QARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPEHTGE  562 (721)
T ss_pred             ceeeeeehhh--hcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCccccc
Confidence            3488999999  788888999999999999876 456887766 4889999999999999888765

>KOG4429|consensus

Probab=96.79  E-value=0.00025  Score=60.94  Aligned_cols=55  Identities=24%  Similarity=0.179  Sum_probs=49.8

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      ..+.++|.|  ++...+||....|+++.+.++-..|||.|++.|..|-||+.+++..
T Consensus       364 ~lcdafYSf--qarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  364 ILCDAFYSF--QARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HHhhhhhcc--ccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence            368899999  7788889999999999999999999999999999999999998753

>KOG2222|consensus

Probab=96.75  E-value=0.0003  Score=64.45  Aligned_cols=57  Identities=35%  Similarity=0.700  Sum_probs=51.0

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      .++.|+.||...+.+||.|+++|+|+++..-+.-.|.|. .+|-.||||+.||+-+..
T Consensus       549 krakal~df~r~dddelgfrkndiitiisekdehcwvge-lnglrgwfpakfvellde  605 (848)
T KOG2222|consen  549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGE-LNGLRGWFPAKFVELLDE  605 (848)
T ss_pred             HHHHHHhhhhhccccccccccccEEEEeecCCcceeeec-cccccccchHHHHHHHHh
Confidence            457789999999999999999999999998888889999 999999999999876544

>KOG2528|consensus

Probab=96.61  E-value=0.0017  Score=59.08  Aligned_cols=58  Identities=31%  Similarity=0.532  Sum_probs=51.9

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      .++++|+|.....++++...|+++.++..+ ..+||.+.+..|.+|.||+.||+.+...
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a   62 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLA   62 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccc
Confidence            468899999999999999999999998865 5789999999999999999999987743

>KOG3771|consensus

Probab=96.42  E-value=0.003  Score=58.01  Aligned_cols=52  Identities=25%  Similarity=0.137  Sum_probs=42.4

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCcEE
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVE  260 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-~~~w~~~~~~~~~G~~P~~~v~  260 (288)
                      .+.++|+|  .+.+.++|+|+.||+|.|+... .++||+|++.|..+-+|.+|+.
T Consensus       402 ~v~a~~dy--~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~  454 (460)
T KOG3771|consen  402 KVKALHDY--AAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP  454 (460)
T ss_pred             ceeccccc--cccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence            47899999  7899999999999999999854 4689999887776666666553

>KOG1856|consensus

Probab=96.35  E-value=0.0056  Score=61.73  Aligned_cols=82  Identities=20%  Similarity=0.286  Sum_probs=63.2

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee-CCeEEEEEEEeecCCC---cceEEeeCCcccCChhh
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIINKITNTE---QQTCYKIGDKTFSDLPS   87 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v~h~~I~~~~~~~---~~~~~~~~~~~F~sl~~   87 (288)
                      |-|| +++-++|+.+|..... |.++||+|+......+++++- ++...|+.|...+..+   -++.+.+++..|..|.+
T Consensus      1109 P~F~-n~n~eQAe~yL~~~d~-ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDLDE 1186 (1299)
T KOG1856|consen 1109 PLFK-NLNAEQAEAYLSDMDQ-GELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDLDE 1186 (1299)
T ss_pred             cccc-CCCHHHHHHHHHhccc-ccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccHHH
Confidence            7788 9999999999988777 999999999878888898886 4556777777544321   01114456789999999


Q ss_pred             hhhhheec
Q psy5076          88 LLAFYKVH   95 (288)
Q Consensus        88 LV~~y~~~   95 (288)
                      +|.-|-..
T Consensus      1187 iI~r~vqp 1194 (1299)
T KOG1856|consen 1187 IIARYVQP 1194 (1299)
T ss_pred             HHHHHHHH
Confidence            99988653

>KOG1451|consensus

Probab=96.31  E-value=0.0032  Score=59.18  Aligned_cols=53  Identities=32%  Similarity=0.388  Sum_probs=44.4

Q ss_pred             EEEEEcccCCCCCCCeeeecCCCEEEEEE-eCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         208 ARVKQVRVPNAYDKTALKLEIGDIIKVTK-TNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       208 ~~~l~~~~~~~~~~~eLs~~~g~~v~v~~-~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      +.++|.-  .+....+|+|..|.++..+. ...+||..|+++|+.|++|.|||+++
T Consensus       759 ~k~lyAc--~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l  812 (812)
T KOG1451|consen  759 VKTLYAC--TADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL  812 (812)
T ss_pred             ccceecc--CCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence            5556554  67777899999999988776 55689999999999999999999864

>KOG0609|consensus

Probab=96.25  E-value=0.0011  Score=61.75  Aligned_cols=56  Identities=21%  Similarity=0.392  Sum_probs=43.8

Q ss_pred             eEEEEEEcccCCCCC-----CCeeeecCCCEEEEEEeCCCCeeEEEe-----CCeeeEecCCcEEE
Q psy5076         206 AFARVKQVRVPNAYD-----KTALKLEIGDIIKVTKTNINGQWEGEL-----NGKTGHFPFTHVEF  261 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~-----~~eLs~~~g~~v~v~~~~~~~w~~~~~-----~~~~G~~P~~~v~~  261 (288)
                      .+++|+|||+|....     ...|+|.+||++.|+.+.|..||.+..     ++.+|++|+..++.
T Consensus       215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe  280 (542)
T KOG0609|consen  215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE  280 (542)
T ss_pred             eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence            589999999874332     226999999999999999999996543     25679999866544

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=96.19  E-value=0.0061  Score=51.44  Aligned_cols=73  Identities=19%  Similarity=0.338  Sum_probs=53.8

Q ss_pred             CCHHHHHHHHcC----CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEE--EEeecCCCcceEEeeCCcccCChhhhhhh
Q psy5076          18 MTRQEAQAILLS----EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI--INKITNTEQQTCYKIGDKTFSDLPSLLAF   91 (288)
Q Consensus        18 isr~~ae~lL~~----~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~--I~~~~~~~~~~~~~~~~~~F~sl~~LV~~   91 (288)
                      -++++++++|..    .+.--.|.+..+...+|.|.|+...+...+|..  |.....|     |.+.+..|+++.+|+.+
T Consensus       141 g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p~G-----f~~r~~~f~~~~~L~~~  215 (220)
T PF14633_consen  141 GTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTPDG-----FRFRKQVFPSLDRLINW  215 (220)
T ss_dssp             S-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-SSS-----EEETTEEESSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEecCc-----EEEecccCCCHHHHHHH
Confidence            346677777864    233357888888888999999999866555554  8777777     99999999999999999


Q ss_pred             heec
Q psy5076          92 YKVH   95 (288)
Q Consensus        92 y~~~   95 (288)
                      ++.+
T Consensus       216 FK~~  219 (220)
T PF14633_consen  216 FKKH  219 (220)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            8753

>KOG0609|consensus

Probab=96.16  E-value=0.0017  Score=60.50  Aligned_cols=55  Identities=38%  Similarity=0.767  Sum_probs=45.2

Q ss_pred             eEEeeeccCCCCCC-------CCCCCCCCCEEEEEEecCCCeEEEEeC----CCcEEEEeCCCeEe
Q psy5076         111 EKVIAKYDFDGNDP-------DDLPFKKNDILIVVSKDEEHWWTAQNI----SGEVGSIPVPYVQK  165 (288)
Q Consensus       111 ~~~~a~~~~~~~~~-------~eLs~~~g~~i~vl~~~~~~ww~~~~~----~g~~G~vP~~~v~~  165 (288)
                      ..++|+|||.+..+       ..|+|++||++.|+.+++..||.++..    .+..|.+|+..+++
T Consensus       215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe  280 (542)
T KOG0609|consen  215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE  280 (542)
T ss_pred             eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence            67889999998754       448999999999999999999998753    25679999876654

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=96.12  E-value=0.0092  Score=42.14  Aligned_cols=48  Identities=21%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         122 NDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       122 ~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      .+..+|.+++|+.+.|++..+..-|.|++..|+-|+||.+++-+....
T Consensus        28 ~G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d~~   75 (89)
T PF14603_consen   28 WGGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLDGE   75 (89)
T ss_dssp             --TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS------
T ss_pred             CCcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCCCc
Confidence            457889999999999999999999999999999999999998665544

>KOG3775|consensus

Probab=96.10  E-value=0.0043  Score=55.27  Aligned_cols=58  Identities=29%  Similarity=0.292  Sum_probs=49.0

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~  266 (288)
                      .-++++.|.|  +.++||-|+.||.|.|-...++-|.+|..  .|++|+||+.|+..+....
T Consensus       264 THR~~~rFvP--RHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~e  323 (482)
T KOG3775|consen  264 THRAVFRFVP--RHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPE  323 (482)
T ss_pred             hhhhhhhccC--CCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCch
Confidence            4578999976  56669999999999999998999988744  6999999999999886654

>KOG0197|consensus

Probab=96.00  E-value=0.0024  Score=59.35  Aligned_cols=57  Identities=37%  Similarity=0.816  Sum_probs=49.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCE-EEEEEecCCCeEEEEeC-CCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDI-LIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~-i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~  166 (288)
                      ...++|+++|.+....+|+|.+|++ ..+++..+..||..++. .+..|++|.|||.+.
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            3468999999999999999999999 77777777899998754 688999999999875

>KOG3775|consensus

Probab=95.41  E-value=0.0094  Score=53.19  Aligned_cols=60  Identities=23%  Similarity=0.470  Sum_probs=52.8

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      .+.-++.+.|.+...+||.+..||-|.|-...++-|..|.| ..|+.|+||+.|+-++...
T Consensus       262 e~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~  322 (482)
T KOG3775|consen  262 EQTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP  322 (482)
T ss_pred             chhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence            45567899999999999999999999888888888999988 5699999999999887765

>KOG1451|consensus

Probab=95.07  E-value=0.027  Score=53.26  Aligned_cols=56  Identities=25%  Similarity=0.532  Sum_probs=48.0

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEE-ecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~-~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ...+.+++...+....+++|..|.++.-.. ..++||..|+ .+|.+|++|.|||+.+
T Consensus       756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~Gt-LnGktglip~nyve~l  812 (812)
T KOG1451|consen  756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGT-LNGKTGLIPSNYVEPL  812 (812)
T ss_pred             cccccceeccCCCCcccccccCcceeeeecccCCCCceeee-cCCCcccCcccccCcC
Confidence            345778888889999999999999988666 4578999999 9999999999999864

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.94  E-value=0.079  Score=34.12  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=30.1

Q ss_pred             eeecCCCEEEEEEeCCCC-eeEE-EeCCeeeEecCCcEE
Q psy5076         224 LKLEIGDIIKVTKTNING-QWEG-ELNGKTGHFPFTHVE  260 (288)
Q Consensus       224 Ls~~~g~~v~v~~~~~~~-w~~~-~~~~~~G~~P~~~v~  260 (288)
                      -.+..|+.|.++....++ |+.. ..++..||++..||.
T Consensus        17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            456889999999887665 9887 668899999999984

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG4575|consensus

Probab=94.60  E-value=0.05  Score=51.87  Aligned_cols=58  Identities=24%  Similarity=0.486  Sum_probs=46.8

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~~~  168 (288)
                      -.++|.|.+.++..++|.|-.||+|.++.-.++-||-+... ....|+||+|||.-+..
T Consensus         9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd~   67 (874)
T KOG4575|consen    9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLDK   67 (874)
T ss_pred             ceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeeccc
Confidence            35789999999999999999999999999776656666544 45789999999955443

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.26  E-value=0.11  Score=33.43  Aligned_cols=37  Identities=16%  Similarity=0.528  Sum_probs=29.9

Q ss_pred             CCCCCCEEEEEEecCCC-eEEEEeCCCcEEEEeCCCeE
Q psy5076         128 PFKKNDILIVVSKDEEH-WWTAQNISGEVGSIPVPYVQ  164 (288)
Q Consensus       128 s~~~g~~i~vl~~~~~~-ww~~~~~~g~~G~vP~~~v~  164 (288)
                      .+..|+.|.++.....+ |++....++..|||+..||+
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            35788999999977655 99886588899999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG3725|consensus

Probab=93.87  E-value=0.014  Score=49.61  Aligned_cols=56  Identities=23%  Similarity=0.501  Sum_probs=48.1

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec--CCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~--~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ...+++++||.+....||++-.+++|.|..-.  +.+|..|. .+++.|-+|..|++-+
T Consensus       317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgE-rGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGE-RGNKKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhh-hcCCCCCcchhHHHhc
Confidence            34688999999999999999999999998865  46788888 7788999999998754

>KOG4429|consensus

Probab=93.69  E-value=0.021  Score=49.36  Aligned_cols=54  Identities=22%  Similarity=0.215  Sum_probs=47.9

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      .+.+.|.|.+...++|....|+++.+-+..+.+||.|+ ..|..|.||+.++++.
T Consensus       365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~r-l~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCR-LLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HhhhhhccccccccccCCcccceeeecCcccCCCceee-eccccCCCcHHHHHHh
Confidence            46788999999999999999999988888889999999 8899999999888754

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=93.42  E-value=0.12  Score=36.54  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=28.8

Q ss_pred             CCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcC
Q psy5076         221 KTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIP  263 (288)
Q Consensus       221 ~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~  263 (288)
                      ..+|.+.+||.+.|+...+..=|.|+. .|+-||||..++-+.+
T Consensus        30 ~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d   73 (89)
T PF14603_consen   30 GKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLD   73 (89)
T ss_dssp             TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred             cccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence            458999999999999999888887776 5899999999885544

>KOG0199|consensus

Probab=93.31  E-value=0.31  Score=47.76  Aligned_cols=52  Identities=37%  Similarity=0.450  Sum_probs=42.3

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEE--eCCeeeEecCCcEE
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGE--LNGKTGHFPFTHVE  260 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~--~~~~~G~~P~~~v~  260 (288)
                      +..+++.||+    ..++.|.|.+||.|.|++... +-||.|.  .+++.|.||.+-|.
T Consensus       376 p~~a~~~~d~----~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  376 PAVARETYDS----IEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             Cceeeeeccc----cCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            5567777776    567799999999999998765 5788884  36789999999987

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=93.23  E-value=0.32  Score=32.05  Aligned_cols=37  Identities=24%  Similarity=0.179  Sum_probs=30.0

Q ss_pred             eeecCCCEEEEEEeCCCCeeEEEeC-CeeeEecCCcEE
Q psy5076         224 LKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVE  260 (288)
Q Consensus       224 Ls~~~g~~v~v~~~~~~~w~~~~~~-~~~G~~P~~~v~  260 (288)
                      -.+..|+.+.++...+++|...... |..||+|..++.
T Consensus        25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~~   62 (63)
T smart00287       25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN   62 (63)
T ss_pred             EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeeec
Confidence            4478999999998865589988876 899999887763

>KOG1856|consensus

Probab=92.83  E-value=0.25  Score=50.48  Aligned_cols=81  Identities=23%  Similarity=0.418  Sum_probs=64.6

Q ss_pred             CccccCCCHHHHHHHHcC-CCCCCeEE---EEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhh
Q psy5076          12 SWYFGMMTRQEAQAILLS-EKDNGAFL---VRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPS   87 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~-~~~~G~FL---vR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~   87 (288)
                      .+|. .=++++.|++|.. ...++.++   ..-|...+|.|+|+.+.+++++|--|...+.+     |++.+..|+|+.+
T Consensus      1206 kyf~-~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g-----~~~rg~~f~tld~ 1279 (1299)
T KOG1856|consen 1206 KYFF-TGTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEG-----FRFRGQNFGTLDE 1279 (1299)
T ss_pred             hHhh-cCCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcccc-----eEEecccchhHHH
Confidence            4555 3348899999984 33335554   45677889999999999999999999988887     9999999999999


Q ss_pred             hhhhheecccC
Q psy5076          88 LLAFYKVHYLD   98 (288)
Q Consensus        88 LV~~y~~~~l~   98 (288)
                      |..+++.+-..
T Consensus      1280 L~~~FK~h~~~ 1290 (1299)
T KOG1856|consen 1280 LCRWFKRHYKD 1290 (1299)
T ss_pred             HHHHHHHHhcC
Confidence            99998876443

>KOG3771|consensus

Probab=92.82  E-value=0.058  Score=49.83  Aligned_cols=53  Identities=26%  Similarity=0.324  Sum_probs=40.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC-CCeEEEEeCCCcEEEEeCCCe
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYV  163 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-~~ww~~~~~~g~~G~vP~~~v  163 (288)
                      ...+.++++|.+++.++|+|..|++|.|+..++ +.||.|. ..|..+-++.+|+
T Consensus       400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~-~mg~ke~~~~~~~  453 (460)
T KOG3771|consen  400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGW-LMGVKESDWNGLF  453 (460)
T ss_pred             ccceeccccccccccccccccCCCEEEEecCCCccchhhHH-Hhhhcccccccce
Confidence            346789999999999999999999999998553 5688887 4454444444444

>KOG3565|consensus

Probab=92.62  E-value=0.06  Score=52.58  Aligned_cols=56  Identities=18%  Similarity=0.345  Sum_probs=45.8

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEE--eCCeeeEecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGE--LNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~--~~~~~G~~P~~~v~~~~~  264 (288)
                      .+.++|.|  .+..++++++..|+++.+++... +||=+++  .++..|+||..|++.+..
T Consensus       580 ~~~a~~~~--~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~~  638 (640)
T KOG3565|consen  580 TSKALYAF--EGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTET  638 (640)
T ss_pred             ceecccCc--CCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccccc
Confidence            47778888  66777899999999999998765 5665776  678999999999987654

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=92.36  E-value=0.23  Score=41.50  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=69.2

Q ss_pred             CCCCCCEEEEEEecCC-CeEEEEeCCCcEEEEeCCCeEecccCCcccccccCCCCCCCCCCCCCCCccccccccCCCCCe
Q psy5076         128 PFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPA  206 (288)
Q Consensus       128 s~~~g~~i~vl~~~~~-~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (288)
                      ++++|+.+.|+..... +|.+.+..+|+.|||+..++........+                        .|.+...   
T Consensus        49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~~------------------------~p~~~~n---  101 (205)
T COG3103          49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNER------------------------VPDLELN---  101 (205)
T ss_pred             EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcccccccee------------------------cCchhhh---
Confidence            5789999999998765 78888878899999999887654433111                        1111111   


Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                       ++.+-.-....    .=.+..|..+.+..+..++|..-...++.||+-..|+..-
T Consensus       102 -Vr~~t~t~~~v----~g~~~~~t~~~~~sk~~~~w~~~~~~~k~~~vs~q~~~~~  152 (205)
T COG3103         102 -VRELTKTLSNV----DGTWKQGTAVMQISKTQNNWYIITLKGKNGYVSGQLVTAQ  152 (205)
T ss_pred             -hhhcccchhhh----hhhhhcCcEEEEEeeccccchhhhhhcccchhhhhheecc
Confidence             11111000000    1136788899999998899999999999999988887543

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=92.33  E-value=0.59  Score=30.07  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=29.3

Q ss_pred             eeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcE
Q psy5076         223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV  259 (288)
Q Consensus       223 eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v  259 (288)
                      -..+.+|..+.+++. .++|...+.+|..||++...|
T Consensus        18 v~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   18 VARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence            456788999998854 778998889999999988764

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>KOG0199|consensus

Probab=91.76  E-value=0.18  Score=49.37  Aligned_cols=52  Identities=27%  Similarity=0.483  Sum_probs=43.0

Q ss_pred             EeeeccCCCCCCCCCCCCCCCEEEEEEecC-CCeEEEEe-CCCcEEEEeCCCeE
Q psy5076         113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQN-ISGEVGSIPVPYVQ  164 (288)
Q Consensus       113 ~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-~~ww~~~~-~~g~~G~vP~~~v~  164 (288)
                      +++-..|.....+.|.|++||.|.|++... +.||+|.+ .+++.|.||.+-|.
T Consensus       377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            455566778889999999999999999764 46999976 66889999998877

>KOG3812|consensus

Probab=91.43  E-value=0.13  Score=45.66  Aligned_cols=49  Identities=20%  Similarity=0.331  Sum_probs=38.8

Q ss_pred             EEEEEcccCCCCC-----CCeeeecCCCEEEEEEeCCCCeeEEEe---CCeeeEecC
Q psy5076         208 ARVKQVRVPNAYD-----KTALKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPF  256 (288)
Q Consensus       208 ~~~l~~~~~~~~~-----~~eLs~~~g~~v~v~~~~~~~w~~~~~---~~~~G~~P~  256 (288)
                      +++..+|++...+     ...++|...|-+.|-++-+++||.|++   ++..||+|+
T Consensus        61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            5777888654333     125999999999999999999998865   567899997

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=90.86  E-value=0.6  Score=30.72  Aligned_cols=36  Identities=31%  Similarity=0.417  Sum_probs=28.4

Q ss_pred             CCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCe
Q psy5076         128 PFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV  163 (288)
Q Consensus       128 s~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v  163 (288)
                      .+..|+.+.++.....+|......+|..||++..++
T Consensus        26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            367899999998765589998855699999977654

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.52  E-value=0.46  Score=39.82  Aligned_cols=42  Identities=7%  Similarity=0.184  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEEecC-CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         128 PFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       128 s~~~g~~i~vl~~~~-~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      .+..|+.|.++...+ .+|...+..+|+.|||+..|+......
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p~~   91 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTPSL   91 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCccH
Confidence            467899999998765 579998877899999999998765544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.94  E-value=0.7  Score=38.77  Aligned_cols=39  Identities=15%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             eeecCCCEEEEEEeCC-CCeeEEEe-CCeeeEecCCcEEEc
Q psy5076         224 LKLEIGDIIKVTKTNI-NGQWEGEL-NGKTGHFPFTHVEFI  262 (288)
Q Consensus       224 Ls~~~g~~v~v~~~~~-~~w~~~~~-~~~~G~~P~~~v~~~  262 (288)
                      -++.+|+.|.|++..+ ++|...+. +|+.||++..||...
T Consensus        48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence            4578999999998776 57887764 688999999998654

>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface

Probab=87.81  E-value=3.5  Score=28.49  Aligned_cols=43  Identities=28%  Similarity=0.434  Sum_probs=34.7

Q ss_pred             CccccCCCHHHHHHHHcC--CCCCCeEEEEeCCCCCCceEEEEeeC
Q psy5076          12 SWYFGMMTRQEAQAILLS--EKDNGAFLVRDSNTILGNYVLCVKEN   55 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~--~~~~G~FLvR~s~~~~~~~~lsv~~~   55 (288)
                      |=|...|+=+|....|+.  ..+ |+|+.|-|.+..|++++-....
T Consensus         3 pgY~AFlTYdevk~~L~~~~~kp-GsYiFRlSCTrLGQWAIGyV~~   47 (86)
T PF02762_consen    3 PGYMAFLTYDEVKARLQHYRDKP-GSYIFRLSCTRLGQWAIGYVTQ   47 (86)
T ss_dssp             TTBETT--HHHHHHHHGGGTTST-TEEEEEEESSSTTSEEEEEEET
T ss_pred             CceeEEEeHHHHHHHHHHHhCCc-ccEEEeeccccccceeEEEEcC
Confidence            557788999999999986  455 9999999999999999887763

The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....

>KOG4384|consensus

Probab=85.49  E-value=0.44  Score=42.58  Aligned_cols=63  Identities=38%  Similarity=0.614  Sum_probs=56.5

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCcc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSV  269 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~  269 (288)
                      .+++.-+|.+..++.++|.+.+|+++.++.+..=+-|.+-++++.|-|+.-||..+..+.+..
T Consensus       138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s~e~~~~  200 (361)
T KOG4384|consen  138 RARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVISEEEPAP  200 (361)
T ss_pred             cccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceecccccccccc
Confidence            367888899899999999999999999999999999999999999999999999887666543

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=85.22  E-value=2  Score=27.58  Aligned_cols=35  Identities=11%  Similarity=0.229  Sum_probs=27.8

Q ss_pred             CCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCe
Q psy5076         127 LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV  163 (288)
Q Consensus       127 Ls~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v  163 (288)
                      ..+.+|..+.++. ..++|...+ .+|..||++.+.|
T Consensus        19 ~~l~~g~~v~v~~-~~~~W~~V~-~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIE-CRGGWCKVR-ADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEE-ccCCeEEEE-ECCeEEeEEeeec
Confidence            3467788887775 567899999 9999999988765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>KOG0040|consensus

Probab=80.99  E-value=0.044  Score=57.03  Aligned_cols=57  Identities=14%  Similarity=0.247  Sum_probs=50.7

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      .+.++|+|  ....+.+.+.++||++..+.-..-.||.++++...|++|+.||+.+...
T Consensus       970 ~v~alyd~--q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen  970 CVLALYDY--QEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred             HHHHHHHH--HhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence            46789999  6788889999999999888888889999999999999999999888665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
2eyz_A	304	Ct10-Regulated Kinase Isoform Ii Length = 304		3e-69
2lqw_A	303	Solution Structure Of Phosphorylated Crkl Length =		5e-69
2lqn_A	303	Solution Structure Of Crkl Length = 303		5e-69
2dvj_A	230	Phosphorylated Crk-Ii Length = 230		4e-45
2eyy_A	204	Ct10-Regulated Kinase Isoform I Length = 204		7e-45
2l3s_A	163	Structure Of The Autoinhibited Crk Length = 163		6e-39
3qwy_A	308	Ced-2 Length = 308		3e-35
2eo3_A	111	Solution Structure Of The Sh2 Domain From Human Crk		4e-27
2eyv_A	124	Sh2 Domain Of Ct10-Regulated Kinase Length = 124		3e-24
3qwx_X	174	Ced-2 1-174 Length = 174		3e-23
1ju5_A	109	Ternary Complex Of An Crk Sh2 Domain, Crk-Derived P		3e-22
2ggr_A	76	Solution Structure Of The C-Terminal Sh3 Domain Of		2e-20
2eyx_A	67	C-Terminal Sh3 Domain Of Ct10-Regulated Kinase Leng		2e-20
2l3p_A	78	Structure Of The Prolyl Cis Isomer Of The Crk Prote		7e-20
2dbk_A	88	Solution Structures Of The Sh3 Domain Of Human Crk-		2e-19
2bzx_A	67	Atomic Model Of Crkl-Sh3c Monomer Length = 67		4e-19
2eyw_A	78	N-Terminal Sh3 Domain Of Ct10-Regulated Kinase Leng		2e-14
1m3c_A	60	Solution Structure Of A Circular Form Of The N-Term		5e-14
1m30_A	58	Solution Structure Of N-Terminal Sh3 Domain From On		7e-14
1b07_A	65	Crk Sh3 Domain Complexed With Peptoid Inhibitor Len		7e-14
1cka_A	57	Structural Basis For The Specific Interaction Of Ly		9e-14
1m3b_A	58	Solution Structure Of A Circular Form Of The N-Term		1e-13
1m3a_A	57	Solution Structure Of A Circular Form Of The Trunca		2e-13
1gri_A	217	Grb2 Length = 217		2e-11
1gri_A	217	Grb2 Length = 217		2e-04
4f59_A	112	Triple Mutant Src Sh2 Domain Length = 112		2e-09
1bkm_A	113	Cocrystal Structure Of D-Amino Acid Substituted Pho		9e-09
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		1e-08
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		2e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		1e-08
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		3e-05
1bkl_A	113	Self-Associated Apo Src Sh2 Domain Length = 113		2e-08
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-08
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		9e-05
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		3e-08
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		9e-05
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		3e-08
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		8e-05
1skj_A	113	Cocrystal Structure Of Urea-Substituted Phosphopept		4e-08
1is0_A	106	Crystal Structure Of A Complex Of The Src Sh2 Domai		4e-08
1kc2_A	103	Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c		4e-08
1sha_A	104	Crystal Structure Of The Phosphotyrosine Recognitio		5e-08
1nzl_A	103	Crystal Structure Of Src Sh2 Domain Bound To Doubly		5e-08
1p13_A	102	Crystal Structure Of The Src Sh2 Domain Complexed W		5e-08
1f1w_A	104	Src Sh2 Thref1trp Mutant Complexed With The Phospho		8e-08
1o41_A	108	Crystal Structure Of Sh2 In Complex With Ru78300. L		9e-08
1o4c_A	108	Crystal Structure Of Sh2 In Complex With Phosphate.		1e-07
1shd_A	107	Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein In		1e-07
1a1a_A	107	C-Src (Sh2 Domain With C188a Mutation) Complexed Wi		2e-07
2kk6_A	116	Solution Structure Of Sh2 Domain Of Proto-Oncogene		2e-07
1jeg_A	83	Solution Structure Of The Sh3 Domain From C-Termina		5e-07
1s1n_A	68	Sh3 Domain Of Human Nephrocystin Length = 68		5e-07
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		6e-07
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		8e-07
2ci9_A	102	Nck1 Sh2-Domain In Complex With A Dodecaphosphopept		1e-06
2ci8_A	99	Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomple		1e-06
1ghu_A	107	Nmr Solution Structure Of Growth Factor Receptor-Bo		1e-06
1csk_A	71	The Crystal Structure Of Human Csksh3: Structural D		1e-06
1a81_A	254	Crystal Structure Of The Tandem Sh2 Domain Of The S		2e-06
1bm2_A	117	Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acet		2e-06
1csy_A	112	Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed		2e-06
2h46_E	116	Native Domain-Swapped Dimer Crystal Structure Of Th		2e-06
1x0n_A	104	Nmr Structure Of Growth Factor Receptor Binding Pro		2e-06
3ove_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-06
3imd_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-06
1fhs_A	112	The Three-Dimensional Solution Structure Of The Src		2e-06
1bmb_A	123	Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-9		2e-06
3n84_A	112	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-06
1fyr_A	114	Dimer Formation Through Domain Swapping In The Crys		3e-06
2dly_A	121	Solution Structure Of The Sh2 Domain Of Murine Fyn-		3e-06
4fl3_A	635	Structural And Biophysical Characterization Of The		3e-06
4fl2_A	636	Structural And Biophysical Characterization Of The		3e-06
3mxc_A	101	Structures Of Grb2-Sh2 Domain And Aicd Peptide Comp		3e-06
2ecd_A	119	Solution Structure Of The Human Abl2 Sh2 Domain Len		3e-06
1zfp_E	98	Growth Factor Receptor Binding Protein Sh2 Domain C		3e-06
3eaz_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		3e-06
2aoa_A	99	Crystal Structures Of A High-affinity Macrocyclic P		3e-06
1tze_E	98	Signal Transduction Adaptor Growth Factor, Grb2 Sh2		3e-06
1cj1_A	96	Growth Factor Receptor Binding Protein Sh2 Domain (		3e-06
1jyq_A	96	Xray Structure Of Grb2 Sh2 Domain Complexed With A		4e-06
2cia_A	102	Human Nck2 Sh2-Domain In Complex With A Decaphospho		6e-06
3eac_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		6e-06
1z3k_A	98	Structural Insight Into The Binding Diversity Betwe		7e-06
2lmj_A	66	Itk-Sh3 Length = 66		7e-06
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		8e-06
4ey0_A	246	Structure Of Tandem Sh2 Domains From Plcgamma1 Leng		8e-06
2yuq_A	85	Solution Structure Of The Sh3 Domain Of Human Tyros		8e-06
2fci_A	105	Structural Basis For The Requirement Of Two Phospho		9e-06
3gqi_B	226	Crystal Structure Of Activated Receptor Tyrosine Ki		9e-06
4fbn_A	246	Insights Into Structural Integration Of The Plcgamm		1e-05
1ab2_A	109	Three-Dimensional Solution Structure Of The Src Hom		1e-05
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		2e-05
3t04_A	123	Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN C		2e-05
1aot_F	106	Nmr Structure Of The Fyn Sh2 Domain Complexed With		2e-05
3k2m_A	112	Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN CO		2e-05
2ebp_A	73	Solution Structure Of The Sh3 Domain From Human Sam		2e-05
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		2e-05
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		1e-04
2gsb_A	119	Solution Structure Of The Second Sh2 Domain Of Huma		2e-05
1rja_A	100	Solution Structure And Backbone Dynamics Of The Non		2e-05
2ysx_A	119	Solution Structure Of The Human Ship Sh2 Domain Len		2e-05
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		2e-05
1tce_A	107	Solution Nmr Structure Of The Shc Sh2 Domain Comple		2e-05
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		2e-05
2eob_A	124	Solution Structure Of The Second Sh2 Domain From Ra		3e-05
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		3e-05
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		1e-04
2yuo_A	78	Solution Structure Of The Sh3 Domain Of Mouse Run A		3e-05
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		4e-05
2abl_A	163	Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine K		4e-05
2ge9_A	125	Solution Structures Of The Sh2 Domain Of Bruton's T		4e-05
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		4e-05
2aug_A	126	Crystal Structure Of The Grb14 Sh2 Domain Length =		4e-05
1gl5_A	67	Nmr Structure Of The Sh3 Domain From The Tec Protei		5e-05
1mil_A	104	Transforming Protein Length = 104		5e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-05
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-05
1i3z_A	103	Murine Eat2 Sh2 Domain In Complex With Slam Phospho		6e-05
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		6e-05
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		6e-05
3nhn_A	193	Crystal Structure Of The Src-Family Kinase Hck Sh3-		7e-05
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		7e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		8e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		8e-05
2d8h_A	80	Solution Structure Of The Sh3 Domain Of Hypothetica		8e-05
2crh_A	138	Solution Structure Of The Sh2 Domain Of Human Proto		8e-05
2xmf_A	60	Myosin 1e Sh3 Length = 60		8e-05
1aya_A	101	Crystal Structures Of Peptide Complexes Of The Amin		9e-05
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		1e-04
3tl0_A	109	Structure Of Shp2 N-Sh2 Domain In Complex With Rlnp		1e-04
2i0n_A	80	Structure Of Dictyostelium Discoideum Myosin Vii Sh		1e-04
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		1e-04
4hxj_A	60	Crystal Structure Of Sh3:rgt Complex Length = 60		1e-04
1qwe_A	64	C-Src Sh3 Domain Complexed With Ligand App12 Length		1e-04
3haj_A	486	Crystal Structure Of Human Pacsin2 F-Bar Domain (P2		2e-04
3hck_A	107	Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domai		2e-04
1prl_C	64	Two Binding Orientations For Peptides To Src Sh3 Do		2e-04
2shp_A	525	Tyrosine Phosphatase Shp-2 Length = 525		2e-04
3s9k_A	118	Crystal Structure Of The Itk Sh2 Domain Length = 11		2e-04
1x2q_A	88	Solution Structure Of The Sh3 Domain Of The Signal		2e-04
1awj_A	77	Intramolecular Itk-Proline Complex, Nmr, Minimized		2e-04
1a0n_B	69	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		2e-04
1uue_A	62	A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length =		2e-04
1azg_B	67	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		3e-04
1bk2_A	57	A-Spectrin Sh3 Domain D48g Mutant Length = 57		3e-04
1avz_C	57	V-1 Nef Protein In Complex With Wild Type Fyn Sh3 D		3e-04
3ua6_A	64	Crystal Structure Of The Human Fyn Sh3 Domain Lengt		3e-04
1wi7_A	68	Solution Structure Of The Sh3 Domain Of Sh3-Domain		3e-04
1fyn_A	62	Phosphotransferase Length = 62		3e-04
1aww_A	67	Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 S		3e-04
2k79_A	63	Solution Structure Of The Binary Complex Between Th		3e-04
2l2p_A	66	Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FR		3e-04
3fj5_A	57	Crystal Structure Of The C-Src-Sh3 Domain Length =		3e-04
2x3w_D	60	Structure Of Mouse Syndapin I (Crystal Form 2) Leng		3e-04
4esr_A	69	Molecular And Structural Characterization Of The Sh		3e-04
1m27_C	61	Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX		4e-04
1shf_A	59	Crystal Structure Of The Sh3 Domain In Human Fyn; C		4e-04
2rn8_A	64	Nmr Structure Note: Murine Itk Sh3 Domain Length =		4e-04
3reb_B	90	Hiv-1 Nef Protein In Complex With Engineered Hck-Sh		4e-04
2o2o_A	92	Solution Structure Of Domain B From Human Cin85 Pro		4e-04
1lui_A	110	Nmr Structures Of Itk Sh2 Domain, Pro287cis Isoform		4e-04
2etz_A	109	The Nmr Minimized Average Structure Of The Itk Sh2		4e-04
2yt6_A	109	Solution Structure Of The Sh3_1 Domain Of Yamaguchi		4e-04
3rea_B	61	Hiv-1 Nef Protein In Complex With Engineered Hck-Sh		4e-04
2k79_B	110	Solution Structure Of The Binary Complex Between Th		5e-04
1ka6_A	128	SapSH2D1A BOUND TO PEPTIDE N-Py Length = 128		5e-04
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		5e-04
1aze_A	56	Nmr Structure Of The Complex Between The C32s-Y7v M		5e-04
2kno_A	131	Nmr Solution Structure Of Sh2 Domain Of The Human T		5e-04
3m0p_A	62	Crystal Structure Of The R21d Mutant Of Alpha-Spect		5e-04
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		5e-04
2l6k_A	123	Solution Structure Of A Nonphosphorylated Peptide R		5e-04
3m0s_A	57	Crystal Structure Of The R21d Mutant Of Alpha-Spect		5e-04
1d4t_A	104	Crystal Structure Of The Xlp Protein Sap In Complex		5e-04
2hda_A	64	Yes Sh3 Domain Length = 64		5e-04
2dm0_A	125	Solution Structure Of The Sh2 Domain Of Human Tyros		6e-04
1mw4_A	120	Solution Structure Of The Human Grb7-Sh2 Domain In		6e-04
3h0h_A	73	Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Le		6e-04
2kbt_A	142	Attachment Of An Nmr-Invisible Solubility Enhanceme		6e-04
1nrv_A	105	Crystal Structure Of The Sh2 Domain Of Grb10 Length		7e-04
1wa7_A	65	Sh3 Domain Of Human Lyn Tyrosine Kinase Length = 65		7e-04
3m7f_A	108	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		7e-04
3h0f_A	73	Crystal Structure Of The Human Fyn Sh3 R96w Mutant		7e-04
4d8d_A	58	Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant		8e-04
3pqz_A	117	Grb7 Sh2 With Peptide Length = 117		8e-04
1neg_A	83	Crystal Structure Analysis Of N-And C-Terminal Labe		8e-04
3thk_A	73	Structure Of Sh3 Chimera With A Type Ii Ligand Link		9e-04
1qly_A	58	Nmr Study Of The Sh3 Domain From Bruton's Tyrosine		9e-04

>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii Length = 304

Iteration: 1
 Score =  258 bits (659), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 180/295 (61%), Gaps = 34/295 (11%)
Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59
Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119
Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179
Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLP------AF 207
           G IPVPYV+KY    + +S         SH  P    +  P  +  +   LP       +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239
Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl Length = 303

Iteration: 1
 Score =  257 bits (657), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)
Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61
Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117
Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK +IL+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177
Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAXAQPQTTTPLPAVSGSPGAAITPLPSTQN 235
Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295
Query: 263 PTN 265
           P N
Sbjct: 296 PQN 298

>pdb|2LQN|A Chain A, Solution Structure Of Crkl Length = 303

Iteration: 1
 Score =  257 bits (656), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)
Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61
Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117
Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK +IL+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177
Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQN 235
Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295
Query: 263 PTN 265
           P N
Sbjct: 296 PQN 298

>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii Length = 230

Iteration: 1
 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 26/191 (13%)
Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 3   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 61
Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 62  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 121
Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 122 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 181
Query: 156 GSIPVPYVQKY 166
           G IPVPYV+KY
Sbjct: 182 GMIPVPYVEKY 192

>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I Length = 204

Iteration: 1
 Score =  177 bits (448), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 26/191 (13%)
Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59
Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119
Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179
Query: 156 GSIPVPYVQKY 166
           G IPVPYV+KY
Sbjct: 180 GMIPVPYVEKY 190

>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk Length = 163

Iteration: 1
 Score =  157 bits (397), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 103/161 (63%), Gaps = 8/161 (4%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
           +E V A +DF+GND +DLPFKK DIL +  K EE WW A+++ G+ G IPVPYV+K    
Sbjct: 1   VEYVRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEKCRPS 60
Query: 170 MSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLPA------FARVKQVRVPNAYDK 221
            + +S        SSH  P    +  P  +  +   LP       +ARV Q RVPNAYDK
Sbjct: 61  SASVSTLTGGNQDSSHPQPLGGPEPGPYAQPSINTPLPNLQNGPFYARVIQKRVPNAYDK 120
Query: 222 TALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           TAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 121 TALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 161

>pdb|3QWY|A Chain A, Ced-2 Length = 308

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 32/287 (11%)
Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE---NNK 57
           T  FDP +  S+YF  M+R+EA  +L   + + G FL+RDS+   G Y L V+E    N 
Sbjct: 32  TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNA 90
Query: 58  VSHYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKV 113
           V HY+I +    E  T     KI +++F D+P+LL  +K+  L  + L+    K  IE V
Sbjct: 91  VCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVV 150
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSIL 173
           +  + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ   E     
Sbjct: 151 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQME----- 205
Query: 174 SLRNLHLDSSSHHVP--------------QQQTTPVRKTHLEVKLPAFARVKQVRVPNAY 219
                H D +S                     +T      L+ +LPA A+V   RVPNAY
Sbjct: 206 ----FHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAY 261
Query: 220 DKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
           D T L+++ G  + VT+   NG ++ EL+G+ G  P T++ F   +E
Sbjct: 262 DPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVSE 308

>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like Protein Length = 111

Iteration: 1
 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 5/106 (4%)
Query: 3   GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
             FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHYI
Sbjct: 11  ARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHYI 69
Query: 63  INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
           IN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +
Sbjct: 70  INSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPR 111

>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase Length = 124

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 76/117 (64%), Gaps = 14/117 (11%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           D  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSHYIIN 
Sbjct: 5   DSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINS 63
Query: 66  ITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT 109
                               +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +++
Sbjct: 64  SGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRS 120

>pdb|3QWX|X Chain X, Ced-2 1-174 Length = 174

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE---NNK 57
           T  FDP +  S+YF  M+R+EA  +L   + + G FL+RDS+   G Y L V+E    N 
Sbjct: 3   TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNA 61
Query: 58  VSHYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKV 113
           V HY+I +    E  T     KI +++F D+P+LL  +K+  L  + L+    K  IE V
Sbjct: 62  VCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVV 121
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +  + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ
Sbjct: 122 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172

>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy Length = 109

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 14/110 (12%)
Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSHYIIN       
Sbjct: 1   SWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPP 59
Query: 72  Q-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
                         +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P ++
Sbjct: 60  VPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 109

>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of C-Crkii Length = 76

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 9   PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 66

>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase Length = 67

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 6   PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 63

>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein Length = 78

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 19  PFYARVIQKRVPNAYDKTALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 76

>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like Protein Length = 88

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FIP 263
           P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F P
Sbjct: 16  PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 75
Query: 264 TNETSVET 271
            N    E+
Sbjct: 76  QNPDENES 83

>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer Length = 67

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/62 (69%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FIP 263
           P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F P
Sbjct: 1   PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 60
Query: 264 TN 265
            N
Sbjct: 61  QN 62

>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase Length = 78

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct: 15  EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 74
Query: 171 SILS 174
           + +S
Sbjct: 75  ASVS 78

>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene Protein C-Crk Length = 60

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 4   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59

>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene Protein C-Crk Length = 58

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor Length = 65

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           + E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59

>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine- Containing Proline-Rich Peptides With The N-Terminal Sh3 Domain Of C-Crk Length = 57

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene Protein C-Crk Length = 58

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N- Terminal Sh3 Domain From Oncogene Protein C-Crk Length = 57

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 3   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 56

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + +    +  
Sbjct: 60  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR----DGA 115
Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEK-------VIAKYDFDGNDPD 125
             Y +    F+ L  L+ +++   +  +  I    + IE+       V A +DFD  +  
Sbjct: 116 GKYFLWVVKFNSLNELVDYHRSTSVSRNQQI--FLRDIEQVPQQPTYVQALFDFDPQEDG 173
Query: 126 DLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           +L F++ D + V+   + +WW      G+ G  P  YV
Sbjct: 174 ELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYV 210

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain Length = 112

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 3  GTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK-- 57
          G  D      WYFG +TR+E++ +LL +E   G FLVR+S T+ G Y L V   +N K  
Sbjct: 1  GAMDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGL 60
Query: 58 -VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           V HY+I K+   +    Y      F+ L  L+A+Y  H
Sbjct: 61 NVKHYLIRKL---DSGGFYITSRTQFNSLQQLVAYYSKH 96

>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++A+LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 6  WYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 66 ---DSGGFYITSRTQFSSLQQLVAYYSKH 91

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 13  WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
           WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 68  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 127
Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYKVH-------YLDTSPLIKPATKTIEK 112
              +    Y      FS L  L+A+Y  H         +  P  KP T+ + K
Sbjct: 128 ---DSGGFYITSRTQFSSLQQLVAYYSKHADGLCHRLTNVCPTSKPQTQGLAK 177

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++     DL FKK + L +V+  E  WW A ++ +G+ G IP  YV
Sbjct: 7   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 13  WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
           WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 150 WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 209
Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 112
              +    Y      F+ L  L+A+Y        H L T  P  KP T+ + K
Sbjct: 210 ---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 259

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 86  PSLLAFYKVHYLDTSP-LIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH 144
           P L   +      TSP    P    +   +A YD++     DL FKK + L +V+  E  
Sbjct: 60  PKLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGD 119
Query: 145 WWTAQNIS-GEVGSIPVPYV 163
           WW A ++S G+ G IP  YV
Sbjct: 120 WWLAHSLSTGQTGYIPSNYV 139

>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain Length = 113

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++++LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 6  WYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 66 ---DSGGFYITSRTQFSSLQQLVAYYSKH 91

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VS 59
           D      WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V 
Sbjct: 60  DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119
Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 112
           HY I K+   +    Y      F+ L  L+A+Y        H L T  P  KP T+ + K
Sbjct: 120 HYKIRKL---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
           +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VS 59
           D      WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V 
Sbjct: 60  DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119
Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 112
           HY I K+   +    Y      F+ L  L+A+Y        H L T  P  KP T+ + K
Sbjct: 120 HYKIRKL---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
           +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VS 59
           D      WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V 
Sbjct: 60  DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119
Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 112
           HY I K+   +    Y      F+ L  L+A+Y        H L T  P  KP T+ + K
Sbjct: 120 HYKIRKL---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
           +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 6  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 66 ---DSGGFYITSRTQFSSLQQLVAYYSKH 91

>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain With Conformationally Constrained Peptide Inhibitor Length = 106

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 65 ---DSGGFYITSRTQFSSLQQLVAYYSKH 90

>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala, Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The Pqpyeeipi Peptide Length = 103

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V    N K   V+HY I K+
Sbjct: 4  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIRKL 63
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 64 ---DSGGFYITSRTQFSSLQQLVAYYSKH 89

>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition Domain Sh2 Of V-Src Complexed With Tyrosine-Phosphorylated Peptides Length = 104

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 65 ---DSGGFYITSRTQFSSLQQLVAYYSKH 90

>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly Phosphorylated Peptide Pqpyepyipi Length = 103

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 4  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 63
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 64 ---DSGGFYITSRTQFSSLQQLVAYYSKH 89

>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With Peptide (Sdpyanfk) Length = 102

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 4  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 63
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 64 ---DSGGFYITSRTQFSSLQQLVAYYSKH 89

>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide S(Ptr)vnvqn Length = 104

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 67 TNTEQQTCYKIGDKT-FSDLPSLLAFYKVH 95
           +      + I  +T FS L  L+A+Y  H
Sbjct: 65 DSGG----FYIWSRTQFSSLQQLVAYYSKH 90

>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300. Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 7  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 66
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      F+ L  L+A+Y  H
Sbjct: 67 ---DSGGFYITSRTQFNSLQQLVAYYSKH 92

>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate. Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 7  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHYKIRKL 66
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      F+ L  L+A+Y  H
Sbjct: 67 ---DSGGFYITSRTQFNSLQQLVAYYSKH 92

>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein Interactions Length = 107

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 9  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 68
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      F+ L  L+A+Y  H
Sbjct: 69 ---DSGGFYITSRTQFNSLQQLVAYYSKH 94

>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine) Length = 107

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 9  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHYKIRKL 68
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      F+ L  L+A+Y  H
Sbjct: 69 ---DSGGFYITSRTQFNSLQQLVAYYSKH 94

>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene Tyrosine- Protein Kinase Fer From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr3461d Length = 116

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
          P     WY G + R EAQ +L   K  G FLVR+S+   G YVL V  + +  H+II  +
Sbjct: 13 PLAEQDWYHGAIPRIEAQELL---KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYV 69
Query: 67 TNTEQQTCYKIGDKTFSDLPSLL 89
           N      Y+     FS++P L+
Sbjct: 70 DN-----MYRFEGTGFSNIPQLI 87

>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src Kinase Complexed With A Peptide From The Tyrosine Phosphatase Pep Length = 83

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVP 161
           I+ A  +  + IAKY+F G    DLPF K D+L +V+   + +W+ A+N  G  G IP  
Sbjct: 4   IQAAWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63
Query: 162 YVQK 165
           YVQK
Sbjct: 64  YVQK 67

>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin Length = 68

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           T E+ IA  DF      DL FKK +IL+V+ K  + WW A++  G  G +P  Y++ YSE
Sbjct: 9   TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQK 165
           + IAKY+F G    DLPF K D+L +V+  ++ +W+ A+N  G  G IP  YVQK
Sbjct: 13  ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNG 275
           L LE GDI+ + +    G W G LNGK GHFP  +VE +P+N  +  T  +G
Sbjct: 24  LNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTATKASG 75

>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide From Epec Protein Tir Length = 102

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY+G +TR +A+  L      G FL+RDS +   ++ + +K   K  H+ +       ++
Sbjct: 7  WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL-----KE 61
Query: 73 TCYKIGDKTFSDLPSLLAFYK 93
          T Y IG + FS +  L+  YK
Sbjct: 62 TVYCIGQRKFSTMEELVEHYK 82

>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed Length = 99

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY+G +TR +A+  L      G FL+RDS +   ++ + +K   K  H+ +       ++
Sbjct: 3  WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL-----KE 57
Query: 73 TCYKIGDKTFSDLPSLLAFYK 93
          T Y IG + FS +  L+  YK
Sbjct: 58 TVYCIGQRKFSTMEELVEHYK 78

>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound Protein 2 (Grb2) Sh2 Domain, 24 Structures Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
           SW+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 1  GSWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 53

>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural Diversity Near The Rt-Src And N-Src Loop Length = 71

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQK 165
           + IAKY+F G    DLPF K D+L +V+  ++ +W+ A+N  G  G IP  YVQK
Sbjct: 13  ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67

>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk Kinase Bound To A Dually Tyrosine-Phosphorylated Itam Length = 254

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 8   HDRNSWYFGMMTRQEA-QAILLSEKDNGAFLVR--DSNTILGNYVLCVKENNKVSHYIIN 64
           H++  W+ G ++R+E+ Q +L+  K NG FL+R  D+N   G+Y LC+    KV HY I+
Sbjct: 155 HEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN---GSYALCLLHEGKVLHYRID 211
Query: 65  K 65
           K
Sbjct: 212 K 212

>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acetyl-L-Thi Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl] (Pkf273-791) Length = 117

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 14 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 64

>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A Phosphopeptidefrom The Gamma Chain Of The High Affinity Immunoglobin G Receptor, Nmr Length = 112

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 4  TFDPHDRNSWYFGMMTRQEA-QAILLSEKDNGAFLVR--DSNTILGNYVLCVKENNKVSH 60
          +   H++  W+ G ++R+E+ Q +L+  K NG FL+R  D+N   G+Y LC+    KV H
Sbjct: 6  SVGSHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN---GSYALCLLHEGKVLH 62
Query: 61 YIINK 65
          Y I+K
Sbjct: 63 YRIDK 67

>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2 Sh2 Domain Length = 116

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 8  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 58

>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein Sh2 Domain Complexed With The Inhibitor Length = 104

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 5  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 55

>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Pyxn- Derived Tripeptide Length = 117

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 8  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 58

>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic Length = 117

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 8  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 58

>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src Homology Domain-2 Of The Growth Factor Receptor Bound Protein-2, Nmr, 18 Structures Length = 112

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 9  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 59

>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974) Length = 123

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 15 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 65

>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A 23-Membered Macrocyclic Ligand Having The Sequence Pyvnvp Length = 112

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 9  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 59

>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal Structure Of The Grb2-Sh2 Ac-Pyvnv Complex Length = 114

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 13 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 63

>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related Kinase Length = 121

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 2  TGTFDPHDRN----SWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENN 56
          +G+    DR+     W+FG + R +A+  LL SE   GAFL+R+S +  G++ L V +  
Sbjct: 3  SGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEG 62
Query: 57 KVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFY 92
           V HY I ++   ++   +    K FS L   + +Y
Sbjct: 63 VVKHYRIRRL---DEGGFFLTRRKVFSTLNEFVNYY 95

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 2  TGTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
          +G  D  +   ++FG +TR+EA+  L+     +G +L+R S   LG + L V    K  H
Sbjct: 4  SGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHH 63
Query: 61 YIINKITN 68
          Y I +  N
Sbjct: 64 YTIERELN 71

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 2  TGTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
          +G  D  +   ++FG +TR+EA+  L+     +G +L+R S   LG + L V    K  H
Sbjct: 5  SGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHH 64
Query: 61 YIINKITN 68
          Y I +  N
Sbjct: 65 YTIERELN 72

>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes Reveal A Conformational Switch And Their Functional Implications. Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 9  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 59

>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain Length = 119

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN    
Sbjct: 14 EKHSWYHGPVSRSAAE-YLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRIN---T 69
Query: 69 TEQQTCYKIGDKTFSDLPSLL 89
          T     Y   +  FS L  L+
Sbjct: 70 TADGKVYVTAESRFSTLAELV 90

>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain Complexed With A Phosphotyrosyl Pentapeptide Length = 98

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 5  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 55

>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), C122s Mutant Length = 106

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+ G +TR++A+  LL   + G FLVR+S    G+Y LCV  + KV HY I
Sbjct: 10 WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRI 59

>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide Mimetic In Complex With The Grb2 Sh2 Domain Length = 99

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 6  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 56

>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain Complexed With Phosphotyrosyl Heptapeptide Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2) Length = 98

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 6  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 56

>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human) Complexed With A Phosphotyrosyl Derivative Length = 96

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 4  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 54

>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly Affine Phospho Peptide Length = 96

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          +W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 4  AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 55

>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide From Translocated Intimin Receptor (Tir) Of Epec Length = 102

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
          + WY+G +TR +A+  L      G FL+RDS +   ++ + +K + K  H+ +  + N  
Sbjct: 5  SEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV- 63
Query: 71 QQTCYKIGDKTFSDLPSLLAFYK 93
              Y IG + F  +  L+  YK
Sbjct: 64 ----YCIGQRRFHTMDELVEHYK 82

>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), Oxidized Form Length = 106

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+ G +TR++A+  LL   + G FLVR+S    G+Y LCV  + KV HY I
Sbjct: 10 WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRI 59

>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain Length = 98

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY+G +TR +A+  L      G FL+RDS +   ++ + +K + K  H+ +  + N    
Sbjct: 3  WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV--- 59
Query: 73 TCYKIGDKTFSDLPSLLAFYK 93
            Y IG + F  +  L+  YK
Sbjct: 60 --YCIGQRRFHTMDELVEHYK 78

>pdb|2LMJ|A Chain A, Itk-Sh3 Length = 66

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           VIA YD+  NDP +L  ++N+   ++   E HWW  Q+ +G  G +P  Y+ + S
Sbjct: 11  VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS 65

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           PA   + +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G  P  YV+
Sbjct: 29  PAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGLFPSNYVK 87

>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1 Length = 246

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           + H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
               E QT   +G+  F  L  L+++Y+ H L
Sbjct: 176 ----EGQTVM-LGNSEFDSLVDLISYYEKHPL 202

>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine- Protein Kinase ItkTSK Length = 85

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
           PL +P       VIA YD+  NDP +L  ++N+   ++   E HWW  Q+ +G  G +P 
Sbjct: 13  PLWEPEETV---VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPS 69
Query: 161 PYVQKYS 167
            Y+ + S
Sbjct: 70  SYLVEKS 76

>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two Phosphotyrosines In Signaling Mediated By Syk Tyrosine Kinase Length = 105

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 3  GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
          G+   H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  
Sbjct: 1  GSPGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCR 59
Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
          + +    E QT   +G+  F  L  L+++Y+ H L
Sbjct: 60 VQQ----EGQTVM-LGNSEFDSLVDLISYYEKHPL 89

>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 226

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           + H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
               E QT   +G+  F  L  L+++Y+ H L
Sbjct: 176 ----EGQTVM-LGNSEFDSLVDLISYYEKHPL 202

>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma Regulatory Region And Mechanism Of Autoinhibition And Activation Based On Key Roles Of Sh2 Domains Length = 246

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           + H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
               E QT   +G+  F  L  L+++Y+ H L
Sbjct: 176 ----EGQTV-MLGNSEFDSLVDLISYYEKHPL 202

>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2 Domain Of C-Abl Length = 109

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 3  GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
          G+ +  +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY 
Sbjct: 1  GSGNSLEKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYR 59
Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLL 89
          IN  ++ +    Y   +  F+ L  L+
Sbjct: 60 INTASDGK---LYVSSESRFNTLAELV 83

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G  P  YV+
Sbjct: 20  QVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGLFPSNYVK 71

>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX Length = 123

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++
Sbjct: 14 EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 72
Query: 69 TEQQTCYKIGDKTFSDLPSLL 89
           +    Y   +  F+ L  L+
Sbjct: 73 GK---LYVSSESRFNTLAELV 90

>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A Phosphotyrosyl Peptide, Minimized Average Structure Length = 106

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 7  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 66
Query: 67 TN 68
           N
Sbjct: 67 DN 68

>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX Length = 112

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++
Sbjct: 3  EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 69 TEQQTCYKIGDKTFSDLPSLL 89
           +    Y   +  F+ L  L+
Sbjct: 62 GK---LYVSSESRFNTLAELV 79

>pdb|2EBP|A Chain A, Solution Structure Of The Sh3 Domain From Human Sam And Sh3 Domain Containing Protein 1 Length = 73

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
           ARV     P+ YD  +LKL+ GDII +      G W G LN K G F F +V+ + +  +
Sbjct: 12  ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPS 71
Query: 268 S 268
           S
Sbjct: 72  S 72

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 13  WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
           WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 68  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 127
Query: 67  TN 68
            N
Sbjct: 128 DN 129

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 7   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57

>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras Gtpase-Activating Protein 1 Length = 119

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
          DPH+   W+ G +++QEA  +L++     +FLVR S+   G+Y L  + N  +  + I  
Sbjct: 11 DPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICP 70
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
            N +    + +G + ++ +  ++  Y+
Sbjct: 71 TPNNQ----FMMGGRYYNSIGDIIDHYR 94

>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN Length = 100

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          W+FG ++R EA   L +E +  GAFL+R S     +YVL V++   V HY I +      
Sbjct: 4  WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63
Query: 72 QTCYKIGDKTFSDLPSLLAFYKVHYLD 98
               +   +F  LP L+ +++   L 
Sbjct: 64 HLNEAV---SFLSLPELVNYHRAQSLS 87

>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain Length = 119

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII--NKITNT 69
           W  G +TR +A+ +L     +G+FLVR S +I   Y LCV   N V  Y I  N+    
Sbjct: 11 CWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKF 70
Query: 70 EQQTCYKIGDKTFSDLPSLLAFYK 93
            Q    +  + F+ L  L+ FYK
Sbjct: 71 TVQASEGVSMRFFTKLDQLIEFYK 94

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
           K +A Y F G +  DLPF+K D++ ++ K +    WWT + ++G  G  P  YV+
Sbjct: 5   KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR-VNGREGIFPANYVE 58

>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed With A Tyrosine-Phosphorylated Peptide From The T-Cell Receptor, Minimized Average Structure Length = 107

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGSQSGQPKHLLL-----VDPE 60
Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
              +  D  F  +  L++++  ++L   P+I   ++
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHL---PIISAGSE 93

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 273
           GDII VT+    G WEG LNG+TG FP  +V  I ++E S  ++G
Sbjct: 32  GDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSGPSSG 76

>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc Gamma-2 Length = 124

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           +PH+   WY+  ++R EA+ +L+    +GAFL+R       +Y +  +   KV H  IN+
Sbjct: 14  NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINR 72
Query: 66  ITNTEQQTCYKIGDKT-FSDLPSLLAFYKVHYL 97
                    + +G    F  L  L+++Y+ H L
Sbjct: 73  -----DGRHFVLGTSAYFESLVELVSYYEKHAL 100

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 13  WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
           WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 69  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVKHYKIRKL 128
Query: 67  TN 68
            N
Sbjct: 129 DN 130

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 8   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58

>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1 Domain Containing 3 Length = 78

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           A  DF+ +D D+L F+KNDI+ ++S+ +EH W  + ++G  G  P  +V+   E
Sbjct: 12  ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVEVLDE 64

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           A YD+   +PD+L     DIL V+ + E+ WWT +  +G+ G +P  Y++K S
Sbjct: 13  ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVER-NGQRGFVPGSYLEKLS 64

>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase Length = 163

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 9   DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++
Sbjct: 68  EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 126
Query: 69  TEQQTCYKIGDKTFSDLPSLL 89
            +    Y   +  F+ L  L+
Sbjct: 127 GK---LYVSSESRFNTLAELV 144

>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's Tyrosine Kinase Length = 125

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 1  MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK--- 57
          MT   D  +   WY   MTR +A+ +L  E   G F+VRDS+   G Y + V   +    
Sbjct: 1  MTEAEDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKA-GKYTVSVFAKSTGDP 59
Query: 58 ---VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
             + HY+   + +T Q   Y      FS +P L+ +++
Sbjct: 60 QGVIRHYV---VCSTPQSQYYLAEKHLFSTIPELINYHQ 95

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +VI  YD+   + D+L F K  I+ V++K++  WW  + +SG+VG  P  YV+
Sbjct: 4   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-VSGQVGLFPSNYVK 55

>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain Length = 126

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 3   GTFDPHDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           G+   H    W+   ++R EAQ +++ +   +G FLVRDS +    +VL +    K+ H+
Sbjct: 18  GSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHF 77
Query: 62  -IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKV 94
            II    + E       G   F+DL  L+ FY++
Sbjct: 78  QIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQL 111

>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein Tyrosine Kinase Length = 67

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           E V+A YDF   +  DL  ++    I++ K++ HWW A++  G  G IP  YV
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYV 55

>pdb|1MIL|A Chain A, Transforming Protein Length = 104

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-----VDPE 60
Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
              +  D  F  +  L++++  ++L   P+I   ++
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHL---PIISAGSE 93

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 9   DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++
Sbjct: 142 EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 200
Query: 69  TEQQTCYKIGDKTFSDLPSLL 89
            +    Y   +  F+ L  L+
Sbjct: 201 GK---LYVSSESRFNTLAELV 218

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 9   DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++
Sbjct: 103 EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 161
Query: 69  TEQQTCYKIGDKTFSDLPSLL 89
            +    Y   +  F+ L  L+
Sbjct: 162 GK---LYVSSESRFNTLAELV 179

>pdb|1I3Z|A Chain A, Murine Eat2 Sh2 Domain In Complex With Slam Phosphopeptide Length = 103

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          +Y G +T++E +A+LL    +G FL+RDS ++ G   LCV     V  Y I +    E+ 
Sbjct: 5  YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFR----EKH 60
Query: 73 TCYKI 77
            Y+I
Sbjct: 61 GYYRI 65

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YD+D    D+L FK+ D +IV  KD   WW  + ++G+ G +P  YVQ
Sbjct: 6   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQ 57

>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck Sh3-Sh2-Linker Regulatory Region Length = 193

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVS 59
           D  +   W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V     ++ + V 
Sbjct: 66  DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVK 125
Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
           HY I  + N      Y     TFS L  L+  YK
Sbjct: 126 HYKIRTLDNG---GFYISPRSTFSTLQELVDHYK 156

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YD+D    D+L FK+ D +IV  KD   WW  + ++G+ G +P  YVQ
Sbjct: 5   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQ 56

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVS 59
           D  +   W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V     ++ + V 
Sbjct: 65  DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVK 124
Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
           HY I  + N      Y     TFS L  L+  YK
Sbjct: 125 HYKIRTLDNG---GFYISPRSTFSTLQELVDHYK 155

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVS 59
           D  +   W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V     ++ + V 
Sbjct: 59  DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVK 118
Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
           HY I  + N      Y     TFS L  L+  YK
Sbjct: 119 HYKIRTLDNG---GFYISPRSTFSTLQELVDHYK 149

>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical Protein Sh3yl1 Length = 80

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYV 163
           +V A Y F+G  P DL F+  D + V+SK + H  WW  + + G+ G  P  YV
Sbjct: 19  EVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK-LRGQTGIFPANYV 71

>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto- Oncogene Protein Vav1 Length = 138

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           WY G M R  A++IL +  D G FLVR        + + +K N +V H    KI   E  
Sbjct: 28  WYAGPMERAGAESILANRSD-GTFLVRQRVKDAAEFAISIKYNVEVKHI---KIMTAE-- 81
Query: 73  TCYKIGD-KTFSDLPSLLAFYK-------VHYLDTS---PLIKPATKTIEK 112
             Y+I + K F  L  L+ FY+          LDT+   P  +P  +TI +
Sbjct: 82  GLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEPEKRTISR 132

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
           PL  P  K      A Y +D  D D+L F  NDI+ ++ +D   WWT + + G+ G  P 
Sbjct: 2   PLGSPQCK------ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGR-LRGKQGLFPN 54
Query: 161 PYVQK 165
            YV K
Sbjct: 55  NYVTK 59

>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino- Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase Length = 101

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+   +T  EA+ +LL+   +G+FL R S +  G++ L V+ N  V+H    KI NT   
Sbjct: 4  WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 60
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHY 96
               G+K F+ L  L+ +Y  H+
Sbjct: 61 YDLYGGEK-FATLAELVQYYMEHH 83

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
           +A Y+F G  P DL FKK D++ ++ K +    WWT +  +G+ G  P  YV+
Sbjct: 7   VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRT-NGKEGIFPANYVR 58

>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr Peptide Length = 109

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+   +T  EA+ +LL+   +G+FL R S +  G++ L V+ N  V+H    KI NT   
Sbjct: 9  WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 65
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHY 96
               G+K F+ L  L+ +Y  H+
Sbjct: 66 YDLYGGEK-FATLAELVQYYMEHH 88

>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3 Domain With Adjacent Proline Rich Region Length = 80

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 114 IAKY-----DFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            AKY     D++ +D   LPFK+NDI+ +  KD+E+ W    ++G+ GS PV +V+
Sbjct: 9   FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 11  EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 63

>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex Length = 60

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
           +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12 Length = 64

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +   +A YD++     DL FKK + L +V+  E  WW A ++ +G+ G IP  YV
Sbjct: 7   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61

>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121 Lattice) Length = 486

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 98  DTSPLIKPATKTIE-KVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEV 155
           D++P    AT   E +V A YD++G + D+L FK  D L  +  +DE+ W   +  +G+V
Sbjct: 415 DSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQV 474
Query: 156 GSIPVPYVQ 164
           G  P  YV+
Sbjct: 475 GLYPANYVE 483

>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20 Structures Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVSHYIINKI 66
          W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V     ++ + V HY I  +
Sbjct: 6  WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTL 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
           N      Y     TFS L  L+  YK
Sbjct: 66 DNG---GFYISPRSTFSTLQELVDHYK 89

>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain: Development Of A General Model For Sh3-Ligand Interactions Length = 64

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +   +A YD++     DL FKK + L +V+  E  WW A ++ +G+ G IP  YV
Sbjct: 7   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61

>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2 Length = 525

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 16/92 (17%)
Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENN----KVSHYI 62
           W+ G ++ +EA+ +L  +  +G+FLVR+S +  G++VL V+      E+N    KV+H +
Sbjct: 112 WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 171
Query: 63  INKITNTEQQTCYKI-GDKTFSDLPSLLAFYK 93
           I       Q+  Y + G + F  L  L+  YK
Sbjct: 172 IRC-----QELKYDVGGGERFDSLTDLVEHYK 198

>pdb|3S9K|A Chain A, Crystal Structure Of The Itk Sh2 Domain Length = 118

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYIINKI 66
          WY   ++R +A+ +LL     GAF+VRDS T  G Y + V       EN  + HY I K 
Sbjct: 11 WYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHI-KE 68
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
          TN   +  Y      F  +P L+ +++
Sbjct: 69 TNDSPKRYYVAEKYVFDSIPLLIQYHQ 95

>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal Transducing Adaptor Molecule 2 Length = 88

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
           I+   K   KV A YDF+  + ++L FK  +I+IV+   + +WW  +N  G +G  P  +
Sbjct: 10  IQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG-IGLFPSNF 68
Query: 163 V 163
           V
Sbjct: 69  V 69

>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average Structure Length = 77

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+
Sbjct: 23  VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 73

>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3- Kinase, Family Of 25 Structures Length = 69

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 9   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59

>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+A YD+    P ++  KK DIL +++   + WW  + ++G  G +P  YV+K
Sbjct: 7   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTE-VNGRQGFVPAAYVKK 60

>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3-Kinase, Minimized Average (Probmap) Structure Length = 67

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 7   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57

>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant Length = 57

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+A YD+    P ++  KK DIL +++   + WW  + ++G  G +P  YV+K
Sbjct: 2   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNGRQGFVPAAYVKK 55

>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 4   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain Length = 64

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 9   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59

>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 Length = 68

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
           L+L++GDII+V      G WEG LNGKTG FP
Sbjct: 24  LELKVGDIIEVVGEVEEGWWEGVLNGKTGMFP 55

>pdb|1FYN|A Chain A, Phosphotransferase Length = 62

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 8   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58

>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 Structures Length = 67

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +T  ++KV+A YD+   + +DL  +K D   ++ +    WW A++ +G+ G IP  YV +
Sbjct: 4   STSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63

>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3 And Sh2 Domain Of Interleukin-2 Tyrosine Kinase Length = 63

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ + S
Sbjct: 8   VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEKS 62

>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR RELAXATION Dispersion Experiments Length = 66

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           A YD++    DDL F K +   +++  E  WW  +++ +GE G IP PY+
Sbjct: 12  ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYL 61

>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++     DL FKK + L +V+  E  WW A ++ +G  G IP  YV
Sbjct: 4   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54

>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2) Length = 60

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQ 164
           +V A YD+DG + D+L FK  D L  + +++E  W    + SG++G  P  YV+
Sbjct: 5   RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58

>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3 Domain Of Ahi-1 In Regulation Of Cellular Resistance Of Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine Kinase Inhibitors Length = 69

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 95  HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
           H +DT+P           V+A YD+  N  D+L   + DI+ V  KD E WW      G+
Sbjct: 1   HQVDTAP----------TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQ 50
Query: 155 VGSIPVPYV 163
            G  P  +V
Sbjct: 51  EGYFPANHV 59

>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX Length = 61

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 5   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55

>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn; Comparison Of The Three-Dimensional Structures Of Sh3 Domains In Tyrosine Kinases And Spectrin Length = 59

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 5   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55

>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain Length = 64

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ + S
Sbjct: 8   VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEKS 62

>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain Length = 90

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG-EVGSIPVPYVQK 165
           V+A YD+    PDDL F+K D ++V+ +  E WW A++++  + G IP  YV +
Sbjct: 6   VVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 58

>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein Length = 92

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
           L+L++GDII+V      G WEG LNGKTG FP
Sbjct: 35  LELKVGDIIEVVGEVEEGWWEGVLNGKTGMFP 66

>pdb|1LUI|A Chain A, Nmr Structures Of Itk Sh2 Domain, Pro287cis Isoform, Ensemble Of 20 Low Energy Structures Length = 110

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYIINKI 66
          WY   ++R +A+ +LL     GAF+VRDS T  G Y + V       EN  + HY I K 
Sbjct: 9  WYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIKHYHI-KE 66
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
          TN   +  Y      F  +P L+ +++
Sbjct: 67 TNDSPKRYYVAEKYVFDSIPLLIQYHQ 93

>pdb|2ETZ|A Chain A, The Nmr Minimized Average Structure Of The Itk Sh2 Domain Bound To A Phosphopeptide Length = 109

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYIINKI 66
          WY   ++R +A+ +LL     GAF+VRDS T  G Y + V       EN  + HY I K 
Sbjct: 9  WYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIKHYHI-KE 66
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
          TN   +  Y      F  +P L+ +++
Sbjct: 67 TNDSPKRYYVAEKYVFDSIPLLIQYHQ 93

>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi Sarcoma Viral (V-Yes) Oncogene Homolog 1 Length = 109

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
           T  +   +A YD++    +DL FKK +   +++  E  WW A++I+ G+ G IP  YV
Sbjct: 24  TGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81

>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain Length = 61

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG-EVGSIPVPYVQK 165
           V+A YD+    PDDL F+K D ++V+ +  E WW A++++  + G IP  YV +
Sbjct: 6   VVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 58

>pdb|2K79|B Chain B, Solution Structure Of The Binary Complex Between The Sh3 And Sh2 Domain Of Interleukin-2 Tyrosine Kinase Length = 110

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYIINKI 66
          WY   ++R +A+ +LL     GAF+VRDS T  G Y + V       EN  + HY I K 
Sbjct: 10 WYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIKHYHI-KE 67
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
          TN   +  Y      F  +P L+ +++
Sbjct: 68 TNDSPKRYYVAEKYVFDSIPLLIQYHQ 94

>pdb|1KA6|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Py Length = 128

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          D  + Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y   +++ 
Sbjct: 2  DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTY---RVSQ 58
Query: 69 TE 70
          TE
Sbjct: 59 TE 60

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           V A +DF+  +  +L FK+ D++ +++KD+ +WW  Q ++   G  P  YV  Y+
Sbjct: 7   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ-LNNRRGIFPSNYVAPYN 60

>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10 Structures Length = 56

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           + IAK DF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 2   EAIAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIE 54

>pdb|2KNO|A Chain A, Nmr Solution Structure Of Sh2 Domain Of The Human Tensin Like C1 Domain Containing Phosphatase (Tenc1) Length = 131

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK 53
          WY   ++R +A A LL +KD GAFL+RDS++  G Y L +K
Sbjct: 22 WYKPHLSRDQAIA-LLKDKDPGAFLIRDSHSFQGAYGLALK 61

>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 4. Length = 62

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+A YD+    PD++  KK DIL +++   + WW  + ++   G +P  YV+K
Sbjct: 7   ELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 60

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
           L    GD+I VT+    G WEG LNG+TG FP  +V
Sbjct: 25  LSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60

>pdb|2L6K|A Chain A, Solution Structure Of A Nonphosphorylated Peptide Recognizing Domain Length = 123

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK 53
          WY   ++R +A A LL +KD GAFL+RDS++  G Y L +K
Sbjct: 7  WYKPHLSRDQAIA-LLKDKDPGAFLIRDSHSFQGAYGLALK 46

>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 7 Length = 57

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+A YD+    PD++  KK DIL +++   + WW  + ++   G +P  YV+K
Sbjct: 2   ELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 55

>pdb|1D4T|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With A Slam Peptide Length = 104

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          D  + Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y   +++ 
Sbjct: 2  DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTY---RVSQ 58
Query: 69 TE 70
          TE
Sbjct: 59 TE 60

>pdb|2HDA|A Chain A, Yes Sh3 Domain Length = 64

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    +DL FKK +   +++  E  WW A++I +G+ G IP  YV
Sbjct: 9   VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 59

>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine- Protein Kinase Txk Length = 125

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK------VSHYIINKI 66
           WY   +TR +A+ +L  E   GAF+VRDS   LG+Y + V    +      + HY I K 
Sbjct: 18  WYHRNITRNQAEHLLRQESKEGAFIVRDSRH-LGSYTISVFMGARRSTEAAIKHYQIKK- 75
Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
              +    Y      F  +P L+ +++
Sbjct: 76  --NDSGQWYVAERHAFQSIPELIWYHQ 100

>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex With A 10 Amino Acid Peptide Py1139 Length = 120

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 8   HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           H    W+ G ++R+E+Q ++  +   +G FLVR+S      +VL +    KV HY+I  +
Sbjct: 14  HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLI--L 71
Query: 67  TNTEQQTCY---KIGDKTFSDLPSLLAFYKV 94
            + E+   Y     G   F+DL  L+ F+++
Sbjct: 72  PSEEEGRLYFSMDDGQTRFTDLLQLVEFHQL 102

>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Length = 73

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 19  VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69

>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag (Inset) Using A Sortase-Mediated Protein Ligation Method Length = 142

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK-YSE 168
           A+YDF   D  +L  K+ DI+ +++K  +  W    I G +G  P  YV++ YSE
Sbjct: 10  ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSE 64

>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10 Length = 105

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 8  HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
          H    W+ G ++R+E+  I+  +   +G FL+RDS +    +VL +  + K+ ++ I   
Sbjct: 2  HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61
Query: 67 TNTEQQTCYKI--GDKTFSDLPSLLAFYKV 94
           + + QT + +  G+  FSDL  L+ FY++
Sbjct: 62 ED-DGQTFFSLDDGNTKFSDLIQLVDFYQL 90

>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 108

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 8  HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
          H    W+ G ++R+E+  I+  +   +G FL+RDS +    +VL +  + K+ ++ I   
Sbjct: 2  HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61
Query: 67 TNTEQQTCYKI--GDKTFSDLPSLLAFYKV 94
           + + QT + +  G+  FSDL  L+ FY++
Sbjct: 62 ED-DGQTFFSLDDGNTKFSDLIQLVDFYQL 90

>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant Length = 73

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 19  VALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69

>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant Length = 58

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 5   VALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55

>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide Length = 117

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 8  HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
          H    W+ G ++R+E+Q ++  +   +G FLVR+S      +VL +    KV HY+I  +
Sbjct: 11 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLI--L 68
Query: 67 TNTEQQTCY---KIGDKTFSDLPSLLAFYKV 94
           + E+   Y     G   F+DL  L+ F+++
Sbjct: 69 PSEEEGRLYFSMDDGQTRFTDLLQLVEFHQL 99

>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled Sh3- Domain Of Alpha-Chicken Spectrin Length = 83

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           E V+A YD+    P ++  KK DIL +++   + WW  + ++   G +P  YV+K +   
Sbjct: 18  ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLAAAW 76
Query: 171 S 171
           S
Sbjct: 77  S 77

>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To The Chain C- Terminal Length = 73

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           E V+A YD+    P ++  KK DIL +++   + WW  + ++   G +P  YV+K     
Sbjct: 6   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDPAQ 64
Query: 171 S 171
           S
Sbjct: 65  S 65

>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase, 20 Structures Length = 58

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           ++KV+A YD+   + +DL  +K D   ++ +    WW A++ +G+ G IP  YV +
Sbjct: 1   LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	3e-74
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-69
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-04
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	5e-63
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	2e-45
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	1e-44
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	3e-04
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	2e-35
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	3e-16
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	1e-34
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	8e-33
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	7e-30
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	1e-28
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	3e-28
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	1e-27
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	2e-27
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	3e-27
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	1e-26
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	3e-26
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	3e-26
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	9e-26
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	1e-25
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	2e-25
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	2e-25
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	3e-25
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	8e-05
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	4e-25
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	4e-25
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	8e-25
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	9e-25
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	5e-04
2dly_A	121	FYN-related kinase; BRK family kinase, structural	9e-25
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	1e-24
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	1e-24
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	5e-12
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	1e-24
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	2e-24
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	2e-24
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	1e-13
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	2e-24
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	3e-24
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	3e-24
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	3e-05
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	4e-24
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	4e-24
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	6e-12
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	8e-24
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	8e-24
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	1e-23
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	2e-23
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	4e-12
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	2e-07
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	2e-23
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	6e-19
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	4e-23
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	6e-23
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	2e-22
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	9e-04
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	2e-22
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	2e-22
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	3e-22
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	4e-22
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	7e-20
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	4e-22
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	6e-22
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	6e-12
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	8e-22
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	4e-19
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	8e-22
1awj_A	77	ITK; transferase, regulatory intramolecular comple	1e-21
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	1e-21
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	2e-21
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	2e-21
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	6e-21
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	8e-21
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	1e-20
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	2e-20
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	2e-20
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	2e-20
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-20
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	6e-20
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	7e-20
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-19
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-13
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	2e-19
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	2e-19
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	2e-19
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	3e-19
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	7e-09
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	3e-19
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-15
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	3e-19
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	5e-19
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	5e-19
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	6e-19
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	7e-19
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	2e-18
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	3e-18
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	3e-18
1wxb_A	68	Epidermal growth factor receptor pathway substrate	5e-18
1wxb_A	68	Epidermal growth factor receptor pathway substrate	4e-04
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	5e-18
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-18
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-11
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	7e-18
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	9e-18
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	1e-17
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	1e-17
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	1e-17
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	1e-15
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	2e-17
1i07_A	60	Epidermal growth factor receptor kinase substrate	2e-17
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	3e-17
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	4e-09
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	3e-17
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	1e-06
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	4e-17
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	5e-17
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	3e-07
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	5e-17
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	8e-08
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	6e-17
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-13
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	1e-16
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	1e-16
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	3e-07
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	1e-16
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	1e-04
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	1e-16
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	2e-05
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	1e-16
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	2e-16
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	2e-16
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	3e-16
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	3e-16
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	2e-08
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	3e-16
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	4e-16
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	1e-08
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	4e-16
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	1e-06
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	4e-16
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	4e-04
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	4e-16
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	5e-16
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	6e-05
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	5e-16
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	6e-16
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	1e-04
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	6e-16
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	4e-08
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	6e-16
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	1e-07
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	7e-16
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	5e-08
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	7e-16
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	1e-08
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	8e-16
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-07
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	8e-16
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	1e-07
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	9e-16
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	1e-07
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	1e-15
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	7e-08
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-15
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	8e-11
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	1e-15
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	1e-15
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	7e-05
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	1e-15
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	1e-15
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	7e-08
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	2e-15
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	2e-07
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	2e-15
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	2e-15
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	3e-08
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	2e-15
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	4e-04
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	2e-15
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	2e-15
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	4e-08
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	2e-15
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	1e-07
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	2e-15
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	3e-04
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	3e-15
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	1e-08
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	3e-15
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	2e-08
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	3e-15
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	9e-05
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	3e-15
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	2e-10
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	3e-15
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	9e-08
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	3e-15
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	3e-15
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	5e-07
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	6e-15
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	6e-07
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	6e-15
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	2e-08
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	7e-15
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	6e-08
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	7e-15
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	5e-09
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	7e-15
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	5e-09
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	9e-15
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	4e-05
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	9e-15
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	2e-06
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	1e-14
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	2e-07
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	9e-13
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	1e-14
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	5e-09
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	1e-14
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	1e-14
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	5e-09
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	1e-14
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	7e-09
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	1e-14
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	5e-08
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	2e-14
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	4e-04
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	3e-14
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	6e-05
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	3e-14
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	1e-08
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	4e-14
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	4e-08
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	4e-14
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	4e-14
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	2e-10
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	4e-14
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	9e-07
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	6e-14
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	6e-09
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	8e-14
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	2e-05
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	8e-14
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	2e-10
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	8e-14
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	4e-11
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	9e-14
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	5e-09
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	9e-14
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	5e-08
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	1e-13
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	4e-11
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	1e-13
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	4e-05
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	1e-13
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	1e-08
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	1e-13
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	1e-08
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	1e-13
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	4e-08
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	1e-13
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	2e-05
3u23_A	65	CD2-associated protein; structural genomics, struc	2e-13
3u23_A	65	CD2-associated protein; structural genomics, struc	4e-10
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	2e-13
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	1e-07
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	2e-13
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	3e-13
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	3e-13
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	2e-07
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	3e-13
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	1e-08
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	3e-13
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	1e-10
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	3e-13
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	4e-04
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	3e-13
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	8e-07
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	4e-13
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	1e-09
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	4e-13
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	5e-08
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	4e-13
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	3e-04
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	4e-13
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	1e-04
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	5e-13
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	3e-06
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	6e-13
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	8e-08
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	6e-13
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	7e-13
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	4e-07
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	7e-13
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	7e-08
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	8e-13
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	1e-08
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	1e-12
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	7e-09
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	1e-12
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	5e-09
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	1e-12
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	8e-09
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	1e-12
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	2e-07
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-12
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-08
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	2e-12
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	1e-07
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	2e-12
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	2e-06
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	3e-12
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	9e-05
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	3e-12
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	2e-07
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	3e-12
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	4e-04
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	3e-12
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	5e-05
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	4e-12
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	5e-04
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	4e-12
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	2e-07
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	6e-12
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	4e-07
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	7e-12
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	4e-09
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	1e-11
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	3e-07
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	1e-11
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	4e-11
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	1e-11
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	3e-11
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	3e-11
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	3e-11
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	1e-06
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	4e-11
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	7e-07
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	4e-11
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	6e-07
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	5e-11
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-06
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	1e-10
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-08
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	2e-10
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	5e-06
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	2e-10
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	9e-09
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	2e-10
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	3e-07
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	3e-10
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	2e-05
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	4e-10
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	1e-05
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	4e-10
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	5e-10
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	5e-10
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-06
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	7e-10
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-07
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	8e-10
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	8e-10
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	2e-07
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	1e-09
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-08
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	2e-09
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	4e-09
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	4e-09
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	6e-05
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	7e-09
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	2e-05
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	2e-08
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	2e-06
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	2e-08
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	5e-08
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	4e-06
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	6e-08
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	7e-08
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	2e-07
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	2e-07
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	3e-07
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	6e-07
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	1e-05
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	1e-06
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	2e-06
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	3e-06
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	4e-06
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	1e-05
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	1e-05
1uur_A	473	Stata protein, STAT protein; transcription activat	5e-05
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	7e-05
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	3e-04
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	3e-04
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	4e-04
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	4e-04
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	6e-04

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score =  228 bits (583), Expect = 3e-74
 Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 14/279 (5%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVK---ENN 56
            T  FDP +  S+YF  M+R+EA  +L   + + G FL+RDS +  G Y L V+   E N
Sbjct: 31  TTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGN 89

Query: 57  KVSHYIINKITNTEQ---QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPA-TKTIEK 112
            V HY+I +    E        KI +++F D+P+LL  +K+  L  + L+       IE 
Sbjct: 90  AVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEV 149

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSI 172
           V+  + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ   E  + 
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHND 209

Query: 173 LSLRN-----LHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLE 227
            + +      +             +T      L+ +LPA A+V   RVPNAYD T L+++
Sbjct: 210 RTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVK 269

Query: 228 IGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
            G  + VT+   NG ++ EL+G+ G  P T++ F   +E
Sbjct: 270 KGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVSE 308

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score =  217 bits (552), Expect = 1e-69
 Identities = 135/305 (44%), Positives = 177/305 (58%), Gaps = 34/305 (11%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++  G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSH 59

Query: 61  YIINKI-------------TNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119

Query: 108 KTI------------EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179

Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTP--------VRKTHLEVKLPAF 207
           G IPVPYV+KY    + +S         SH  P     P                  P +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +     
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNP 299

Query: 268 SVETN 272
             + +
Sbjct: 300 EEDFS 304

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 29/175 (16%), Positives = 46/175 (26%), Gaps = 8/175 (4%)

Query: 122 NDPDD--LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH 179
             P D  L   +N  +     +          S       V   +         SL  L 
Sbjct: 42  TSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALL 101

Query: 180 LDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKV 234
                H++             +       + +   V   +D        L  + GDI+++
Sbjct: 102 EFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRI 161

Query: 235 TKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPKTETPT 288
                   W  E   GK G  P  +VE       SV     G+   S P+     
Sbjct: 162 RDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGP 216

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score =  200 bits (508), Expect = 5e-63
 Identities = 133/303 (43%), Positives = 171/303 (56%), Gaps = 41/303 (13%)

Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G ++RQEAQ  L  ++  G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQRH-GMFLVRDSSTCPGDYVLSVSENSRVSHY 61

Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT------------ 109
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117

Query: 110 -------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK +IL+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177

Query: 163 VQKYSEGMSILSLRNLHLDSS-----------------SHHVPQQQTTPVRKTHLEVKLP 205
           V+K           N + +S                     V       +         P
Sbjct: 178 VEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGP 237

Query: 206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
            FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+     
Sbjct: 238 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 297

Query: 266 ETS 268
              
Sbjct: 298 NPD 300

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score =  150 bits (379), Expect = 2e-45
 Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 9/169 (5%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK---ENNKVS 59
            FDP +  S+YF  M+R+EA  +L   +   G FL+RDS+   G Y L V+   E N V 
Sbjct: 5   GFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNAVC 63

Query: 60  HYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIE-KVIA 115
           HY+I +    E  T     KI +++F D+P+LL  +K+  L  + L+    K I   V+ 
Sbjct: 64  HYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 123

Query: 116 KYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ
Sbjct: 124 TFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score =  150 bits (379), Expect = 1e-44
 Identities = 92/216 (42%), Positives = 122/216 (56%), Gaps = 26/216 (12%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
            FD  +R+SWY+G ++RQEA A+L  ++  G FLVRDS+T  G+YVL V EN++VSHYII
Sbjct: 6   NFDSEERSSWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYII 64

Query: 64  NKITNTEQ-------------QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPA---- 106
           N                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P     
Sbjct: 65  NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 124

Query: 107 --------TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
                    +  E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G I
Sbjct: 125 QGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMI 184

Query: 159 PVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTP 194
           PVPYV+KY    + +S         SH  P     P
Sbjct: 185 PVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEP 220

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 6/129 (4%)

Query: 166 YSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-- 223
                   SL  L      H++             +       + +   V   +D     
Sbjct: 90  RIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGND 149

Query: 224 ---LKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETNGNGDIHN 279
              L  + GDI+++        W  E   GK G  P  +VE       SV     G+   
Sbjct: 150 EEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEG 209

Query: 280 STPKTETPT 288
           S P+     
Sbjct: 210 SHPQPLGGP 218

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score =  126 bits (317), Expect = 2e-35
 Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 10/171 (5%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
           +     + W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + 
Sbjct: 52  YIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVL 111

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-----TSPLIKPATKTIEKVIAKYDF 119
           +    +    Y +    F+ L  L+ +++   +          I+   +    V A +DF
Sbjct: 112 R----DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDF 167

Query: 120 DGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           D  +  +L F++ D + V+   + +WW      G+ G  P  YV   +  +
Sbjct: 168 DPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-HGQTGMFPRNYVTPVNRNV 217

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 74.7 bits (183), Expect = 3e-16
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++    
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH 58

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score =  120 bits (303), Expect = 1e-34
 Identities = 57/104 (54%), Positives = 75/104 (72%), Gaps = 5/104 (4%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
           FD  DR++WY G ++RQEAQ  L  ++  G FLVRDS+T  G+YVL V EN++VSHYIIN
Sbjct: 13  FDSSDRSAWYMGPVSRQEAQTRLQGQRH-GMFLVRDSSTCPGDYVLSVSENSRVSHYIIN 71

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
            + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +
Sbjct: 72  SLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPR 111

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 109

 Score =  115 bits (290), Expect = 8e-33
 Identities = 51/110 (46%), Positives = 70/110 (63%), Gaps = 14/110 (12%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK------ 65
           SWY+G ++RQEA A+L  ++  G FLVRDS+T  G+YVL V EN++VSHYIIN       
Sbjct: 1   SWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPP 59

Query: 66  -------ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
                         +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P ++
Sbjct: 60  VPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 109

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score =  108 bits (272), Expect = 7e-30
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           DPH+   W+ G +++QEA  +L++     +FLVR S+   G+Y L  + N  +  + I  
Sbjct: 11  DPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICP 70

Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH-YLDTSPLIKPATK 108
             N +    + +G + ++ +  ++  Y+    ++   L +P   
Sbjct: 71  TPNNQ----FMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPVPM 110

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A Length = 105

 Score =  104 bits (262), Expect = 1e-28
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           H    W+ G ++R+E+  I+  +   +G FL+RDS +    +VL +  + K+ ++ I   
Sbjct: 2   HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61

Query: 67  TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
            + + QT + +  G+  FSDL  L+ FY+++   L    L     +
Sbjct: 62  ED-DGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVL-PCKLKHHCIR 105

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A Length = 117

 Score =  103 bits (260), Expect = 3e-28
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
             H    W+ G ++R+E+Q ++  +   +G FLVR+S      +VL +    KV HY+I 
Sbjct: 9   AIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLIL 68

Query: 65  KITNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
                E +  + +  G   F+DL  L+ F++++   L    L    T+
Sbjct: 69  PSEE-EGRLYFSMDDGQTRFTDLLQLVEFHQLNRGIL-PCLLRHCCTR 114

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A* Length = 100

 Score =  101 bits (255), Expect = 1e-27
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 3  GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
          G+F   +   W+   ++R +A+  LL  KD G F++R S +  G++ + V+  + V H+ 
Sbjct: 1  GSFIDIEFPEWFHEGLSRHQAEN-LLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFK 59

Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
          + + T       Y +  + F  L  L+ +Y+  
Sbjct: 60 VMRDTKGN----YFLWTEKFPSLNKLVDYYRTT 88

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A* Length = 102

 Score =  101 bits (254), Expect = 2e-27
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           WY+G +TR +A+  L      G FL+RDS +   ++ + +K + K  H+ +  + N    
Sbjct: 7   WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV--- 63

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSP 101
             Y IG + F  +  L+  YK   + TS 
Sbjct: 64  --YCIGQRRFHTMDELVEHYKKAPIFTSE 90

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens} Length = 126

 Score =  101 bits (254), Expect = 3e-27
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
             H    W+   ++R EAQ +++     +G FLVRDS +    +VL +    K+ H+ I 
Sbjct: 21  MIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQII 80

Query: 65  KITNTEQ-QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
            + +  +       G   F+DL  L+ FY+++   L    L     +
Sbjct: 81  PVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNKGVLPC-KLKHYCAR 126

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A* Length = 96

 Score = 99.2 bits (248), Expect = 1e-26
 Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          +W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + +    + 
Sbjct: 4  AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR----DG 59

Query: 72 QTCYKIGDKTFSDLPSLLAFYKVH 95
             Y +    F+ L  L+ +++  
Sbjct: 60 AGKYFLWVVKFNSLNELVDYHRST 83

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} PDB: 1jwo_A Length = 98

 Score = 98.4 bits (246), Expect = 3e-26
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++ QEA   L   +D G FLVR+S    G+YVLCV     V HY +         
Sbjct: 7   WFHGKISGQEAVQQLQPPED-GLFLVRESARHPGDYVLCVSFGRDVIHYRVLH----RDG 61

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
                    F +L  ++  Y        + L++P  K
Sbjct: 62  HLTIDEAVFFCNLMDMVEHYSKDKGAICTKLVRPKRK 98

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 98.9 bits (247), Expect = 3e-26
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           +  +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY   +
Sbjct: 11  NSLEKHSWYHGPVSRSAAEY-LLSSLINGSFLVRESESSPGQLSISLRYEGRVYHY---R 66

Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
           I  T     Y   +  FS L  L+  +      L T+ L  PA K
Sbjct: 67  INTTADGKVYVTAESRFSTLAELVHHHSTVADGLVTT-LHYPAPK 110

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 116

 Score = 97.4 bits (243), Expect = 9e-26
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
              P     WY G + R EAQ +L   K  G FLVR+S+   G YVL V  + +  H+II
Sbjct: 10  HMKPLAEQDWYHGAIPRIEAQELL---KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFII 66

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-----DTSPLIKPATKT 109
             + N      Y+     FS++P L+  +              L+ P  K 
Sbjct: 67  QYVDNM-----YRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 100

 Score = 96.5 bits (241), Expect = 1e-25
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 13  WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           W+FG ++R EA   L +E    GAFL+R S     +YVL V++   V HY I +      
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG--- 60

Query: 72  QTCYKIGDK-TFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
                + +  +F  LP L+ +++   L     L  P  K
Sbjct: 61  -GRLHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCRK 98

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 96.9 bits (242), Expect = 2e-25
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
              +    W+ G M RQ+    LL    +G +L+R+       + + +K N++V H  + 
Sbjct: 10  EIDYTAYPWFAGNMERQQTDN-LLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVV 68

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATKT 109
           +    +    +    K F  L  L+ +Y+ H L  S       L  P +  
Sbjct: 69  E----KDNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGP 115

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Length = 112

 Score = 96.2 bits (240), Expect = 2e-25
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
           HD  +W  G   R +A+ +L  ++D G FLVR+S+   G Y   V  + +V H +INK  
Sbjct: 7   HDEKTWNVGSSNRNKAENLLRGKRD-GTFLVRESSKQ-GCYACSVVVDGEVKHCVINK-- 62

Query: 68  NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATKT 109
            T     +      +S L  L+  Y+   L          L  P    
Sbjct: 63  -TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQ 109

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 94.1 bits (235), Expect = 3e-25
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 38.7 bits (91), Expect = 8e-05
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVE 260
           N  D+  L  + GDI+++        W  E   GK G  P  +VE
Sbjct: 11  NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ... Length = 117

 Score = 95.8 bits (239), Expect = 4e-25
 Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + +  +   +
Sbjct: 8   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR--DGAGK 65

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTS-----PLIKPATKT 109
             Y +    F+ L  L+ +++   +  +       I+   + 
Sbjct: 66  --YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 105

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C* Length = 111

 Score = 95.5 bits (238), Expect = 4e-25
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 3  GTFDPHDRNSWYFGMMTRQEAQAILL--SEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
          G+  P     W+ GM++R +A  ++L      +G FLVR S T  G  VL      K  H
Sbjct: 1  GSDQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKH 60

Query: 61 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
            ++   N   Q   ++    F  +  +L  ++VH +
Sbjct: 61 LRLSL--NAAGQ--CRVQHLHFQSIFDMLEHFRVHPI 93

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A* Length = 104

 Score = 94.7 bits (236), Expect = 8e-25
 Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 9   DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
           D  + Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++   
Sbjct: 2   DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61

Query: 69  TEQ--QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
                +T   +  + F  + +L++ ++     +   PL  P  K
Sbjct: 62  GSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVI-PLQYPVEK 104

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 93.5 bits (233), Expect = 9e-25
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           T E+ IA  DF      DL FKK +IL+V+ K  + WW A++  G  G +P  Y++ YSE
Sbjct: 9   TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEG-ELNGKTGHFPFTHVE 260
            D TA     L  + G+I+ V +   +G W   +  G  G  P T++E
Sbjct: 17  GDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 121

 Score = 95.0 bits (237), Expect = 9e-25
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
                  W+FG + R +A+  LL  E   GAFL+R+S +  G++ L V +   V HY   
Sbjct: 11  RSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHY--- 67

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKT 109
           +I   ++   +    K FS L   + +Y          L KP  K 
Sbjct: 68  RIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSDGLCVKLEKPCLKI 113

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Length = 106

 Score = 94.2 bits (235), Expect = 1e-24
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
                W+ G +TR++A+ +L   +  G FLVR+S    G+Y LCV  + KV HY   +I 
Sbjct: 5   LSLMPWFHGKITREQAERLLYPPET-GLFLVRESTNYPGDYTLCVSSDGKVEHY---RIM 60

Query: 68  NTEQQTCYKIGDK-TFSDLPSLLAFYKVH--YLDTSPLIKPATKTIEKVIA 115
               +    I ++  F +L  L+  Y      L T  LIKP     E  +A
Sbjct: 61  YHASK--LSIDEEVYFENLMQLVEHYTSDADGLCT-RLIKPKVM--EGTVA 106

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 92.8 bits (231), Expect = 1e-24
 Identities = 40/64 (62%), Positives = 47/64 (73%)

Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+    
Sbjct: 1   PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 60

Query: 265 NETS 268
               
Sbjct: 61  QNPD 64

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 59.3 bits (144), Expect = 5e-12
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           K I K      D   L  +  DI+ V   +    W  + ++G  G  P  +V+ +  
Sbjct: 5   KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVKIFDP 60

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A Length = 128

 Score = 94.8 bits (236), Expect = 1e-24
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 9   DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
           D  + Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++   
Sbjct: 2   DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61

Query: 69  TEQ--QTCYKIGDKTFSDLPSLLAFYKVHYLD--TSPLIKPATKTIEKVIAKYDFDGNDP 124
                +T   +  + F  + +L++ ++         PL  P  K       +      + 
Sbjct: 62  GSWSAETAPGVHKRYFRKIKNLISAFQ-KPDQGIVIPLQYPVEKKSSARSTQGTTGIRED 120

Query: 125 DDLPFKK 131
            D+  K 
Sbjct: 121 PDVCLKA 127

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1 Length = 103

 Score = 93.5 bits (233), Expect = 2e-24
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-- 70
          +Y G +T++E +A+LL    +G FL+RDS ++ G   LCV     V  Y I +  +    
Sbjct: 5  YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64

Query: 71 QQTCYKIGDKTFSDLPSLLAFYKVH 95
           +T        F +L  L++ Y   
Sbjct: 65 IETDAHTPRTIFPNLQELVSKYGKP 89

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 93.3 bits (232), Expect = 2e-24
 Identities = 41/69 (59%), Positives = 49/69 (71%)

Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+    
Sbjct: 16  PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 75

Query: 265 NETSVETNG 273
                  +G
Sbjct: 76  QNPDENESG 84

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
                  K I K      D   L  +  DI+ V   +    W  + ++G  G  P  +V+
Sbjct: 13  QNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVK 71

Query: 165 KYSE 168
            +  
Sbjct: 72  IFDP 75

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Length = 109

 Score = 93.5 bits (233), Expect = 2e-24
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 13/105 (12%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+   +T  EA+ +LL+   +G+FL R S +  G++ L V+ N  V+H    KI NT   
Sbjct: 9   WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 65

Query: 73  TCYKI-GDKTFSDLPSLLAFYKVHYLDTS-------PLIKPATKT 109
             Y + G + F+ L  L+ +Y  H+            L  P    
Sbjct: 66  --YDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCA 108

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 119

 Score = 93.6 bits (233), Expect = 3e-24
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 3   GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
           G         W+ G ++R++A+ +L S+   G+FL+R S++ +G Y L  K  +   H+ 
Sbjct: 8   GQLAQDGVPEWFHGAISREDAENLLESQPL-GSFLIRVSHSHVG-YTLSYKAQSSCCHF- 64

Query: 63  INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTSP--LIKPATK 108
              +   +  T    G+K   + L +L+ F++   ++     L +P  +
Sbjct: 65  --MVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQ 111

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 91.9 bits (229), Expect = 3e-24
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           + E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY  
Sbjct: 2   SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTN 265
           N  D+  L  + GDI+++        W  E   GK G  P  +VE    +
Sbjct: 13  NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHH 62

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Length = 104

 Score = 93.1 bits (232), Expect = 4e-24
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 14/104 (13%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-----VDPE 60

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSP------LIKPATKTI 110
              +  D  F  +  L++++  ++L          L +P  + +
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 91.6 bits (228), Expect = 4e-24
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +  
Sbjct: 6   PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQ 65

Query: 265 NE 266
             
Sbjct: 66  QN 67

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 58.9 bits (143), Expect = 6e-12
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 113 VIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
                    N  D   L  +  +++ V   +    W  +  +G+ G  P  +V+   +
Sbjct: 9   ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGE-CNGKRGHFPFTHVRLLDQ 65

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Length = 138

 Score = 93.2 bits (232), Expect = 8e-24
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
                + WY G M R  A++ +L+ + +G FLVR        + + +K N +V H  I  
Sbjct: 21  QDLSVHLWYAGPMERAGAES-ILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMT 79

Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATK 108
                +        K F  L  L+ FY+ + L          L  P  +
Sbjct: 80  ----AEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 119

 Score = 92.4 bits (230), Expect = 8e-24
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
            W  G +TR +A+ +L     +G+FLVR S +I   Y LCV   N V  Y I    + + 
Sbjct: 11  CWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKF 70

Query: 72  --QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
             Q    +  + F+ L  L+ FYK     L T  L  P   
Sbjct: 71  TVQASEGVSMRFFTKLDQLIEFYKKENMGLVT-HLQYPVPL 110

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 90.4 bits (225), Expect = 1e-23
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +T  ++KV+A YD+   + +DL  +K D   ++ +    WW A++ +G+ G IP  YV 
Sbjct: 3   MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 62

Query: 165 KYSE 168
           +  +
Sbjct: 63  EAED 66

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 93.9 bits (233), Expect = 2e-23
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 33/171 (19%)

Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
           PL  P    ++   A  D++     ++     D++ VV K E  WW  Q    + G IP 
Sbjct: 2   PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQM-KAKRGWIPA 60

Query: 161 PYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYD 220
            +++                             P+               +      AY 
Sbjct: 61  SFLE-----------------------------PLDSPDETEDPEPNYAGEPYVAIKAYT 91

Query: 221 KTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
                 + L  G+ ++V    ++G W    +  TG+FP  +++    + + 
Sbjct: 92  AVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQ 142

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 62.7 bits (152), Expect = 4e-12
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 93  KVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS 152
           +                 E  +A   +   + D++   + + + V+ K  + WW      
Sbjct: 64  EPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI-RKD 122

Query: 153 GEVGSIPVPYVQKYSEGMS 171
              G  P  Y+QK  + +S
Sbjct: 123 DVTGYFPSMYLQKSGQDVS 141

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 205 PAFARVKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 261
           P F  ++  R    Y+KT+   + L  GD+++V + + +G W  ++  K G  P + +E 
Sbjct: 6   PEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP 65

Query: 262 IPTNETSVETNGNG 275
           + + + + +   N 
Sbjct: 66  LDSPDETEDPEPNY 79

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score = 95.0 bits (236), Expect = 2e-23
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
          DP     +++G ++R EA+  L      +G FL+R     LG YVL +  + +  H+   
Sbjct: 1  DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHF--- 57

Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           I      T    G K       L  FY   
Sbjct: 58 PIERQLNGTYAIAGGKAHCGPAELCEFYSRD 88

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score = 83.0 bits (205), Expect = 6e-19
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVS 59
                  H+R  WY   +TR+EA+  L S  + +G FL+R      G Y L +     V 
Sbjct: 149 KLIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVY 207

Query: 60  HYIINKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH 95
           HY+I++    ++   Y I +   F  L  L+ + K+ 
Sbjct: 208 HYLISQ----DKAGKYCIPEGTKFDTLWQLVEYLKLK 240

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A Length = 112

 Score = 90.4 bits (225), Expect = 4e-23
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY   +I  
Sbjct: 3  EKHSWYHGPVSRNAAEY-LLSSGINGSFLVRESESSPGQRSISLRYEGRVYHY---RINT 58

Query: 69 TEQQTCYKIGDKTFSDLPSLLAFYKVH 95
                Y   +  F+ L  L+  +   
Sbjct: 59 ASDGKLYVSSESRFNTLAELVHHHSTV 85

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Length = 124

 Score = 90.4 bits (225), Expect = 6e-23
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 10/109 (9%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           +PH+   WY+  ++R EA+ +L+    +GAFL+R       +Y +  +   KV H  IN+
Sbjct: 14  NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINR 72

Query: 66  ITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH--YLDTSPLIKPATKTIE 111
                    + +G    F  L  L+++Y+ H  Y     L  P T  + 
Sbjct: 73  -----DGRHFVLGTSAYFESLVELVSYYEKHALYRKMR-LRYPVTPELL 115

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 87.7 bits (218), Expect = 2e-22
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYV 163
            ++ +  V   Y F     ++L F+K + + V+ K  ++  WW  +N  G+VG +P  YV
Sbjct: 2   GSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61

Query: 164 QKYSEGMSI 172
              S+G ++
Sbjct: 62  VVLSDGPAL 70

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 36.1 bits (84), Expect = 9e-04
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 219 YDKTA-----LKLEIGDIIKV-TKTNINGQW-EGE-LNGKTGHFPFTHVEFIPTNE 266
           Y  ++     L  E G+ ++V  K   + +W + +   G+ G  P  +V  +    
Sbjct: 13  YPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP 68

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 87.3 bits (217), Expect = 2e-22
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVP 161
           I+ +  +  + IAKY+F G    DLPF K D+L +V+   + +W+ A+N  G  G IP  
Sbjct: 4   IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63

Query: 162 YVQKY 166
           YVQK 
Sbjct: 64  YVQKR 68

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 169

 Score = 90.3 bits (224), Expect = 2e-22
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           +        +  WY+G MT  EA+  L    + G FL+RDS+       + VK +   ++
Sbjct: 7   LAKALRELGQTGWYWGSMTVNEAKEKLKEAPE-GTFLIRDSSHSDYLLTISVKTSAGPTN 65

Query: 61  YIINKITNT---EQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKV 113
             I         +   C K   K F  +  L+ +Y     D     +        +
Sbjct: 66  LRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHL 121

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 86.5 bits (215), Expect = 3e-22
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           E V+A YDF   +  DL  ++    I++ K++ HWW A++  G  G IP  YV     
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS 60

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 91.1 bits (226), Expect = 4e-22
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
            + H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + 
Sbjct: 116 TNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQ 174

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATKTIEKVIAKYDFD 120
           +     +     +G+  F  L  L+++Y+ H L     L  P  +   + I   + D
Sbjct: 175 Q-----EGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALEKIGTAEPD 226

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 85.0 bits (210), Expect = 7e-20
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 8   HDRNSWYFGMMT-----RQEAQAILLSE-----KDNGAFLVRDSNTILGNYVLCVKENNK 57
           H    W+ G +      R  A+ +L          +G+FLVR+S T +G+Y L    N K
Sbjct: 1   HSSEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60

Query: 58  VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPL 102
           V H  I+   +      +   +  F  L  L+  Y+   L  +  
Sbjct: 61  VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEF 105

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Length = 118

 Score = 87.8 bits (218), Expect = 4e-22
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 3   GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENN 56
           G+ +  +   WY   ++R +A+ +LL     GAF+VRDS T  G Y + V       EN 
Sbjct: 1   GSPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENP 59

Query: 57  KVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
            + HY I K TN   +  Y      F  +P L+ +++ +   L T  L  P   
Sbjct: 60  CIKHYHI-KETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVT-RLRYPVCG 111

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 85.9 bits (213), Expect = 6e-22
 Identities = 24/66 (36%), Positives = 33/66 (50%)

Query: 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
                ARV     P+ YD  +LKL+ GDII +      G W G LN K G F F +V+ +
Sbjct: 7   GFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVL 66

Query: 263 PTNETS 268
            +  +S
Sbjct: 67  SSGPSS 72

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 59.0 bits (143), Expect = 6e-12
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
           +V   +     D D L  KK DI+ ++SK     W    ++ +VG+    YV   S G
Sbjct: 13  RVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGL-LNNKVGTFKFIYVDVLSSG 69

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 90.7 bits (225), Expect = 8e-22
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 13 WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          ++FG +TR+EA+  L+     +G +L+R S   LG + L V    K  HY    I     
Sbjct: 7  FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHY---TIERELN 63

Query: 72 QTCYKIGDKTFSDLPSLLAFYKVH 95
           T    G +T +    L  ++   
Sbjct: 64 GTYAIAGGRTHASPADLCHYHSQE 87

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 83.4 bits (206), Expect = 4e-19
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
              H++  W+ G ++R+E++ I+L   K NG FL+R  +   G+Y LC+    KV HY I
Sbjct: 152 TTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRI 210

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
           +K    +         K F  L  L+  Y      L    L  P  K
Sbjct: 211 DK---DKTGKLSIPEGKKFDTLWQLVEHYSYKADGLLR-VLTVPCQK 253

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus} Length = 138

 Score = 87.6 bits (217), Expect = 8e-22
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 6   DPHDRNSWYFG-MMTRQEAQAILLSEKD-----NGAFLVRDSNTILGNYVLCVKENNKVS 59
           + H    W+   + +R  A+ +L          +G FLVR+S T   +Y L    + +V 
Sbjct: 17  ELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQ 76

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLI 103
           H  I           Y   + TF+ + +L+  Y+  +L  +   
Sbjct: 77  HCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFE 120

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 85.5 bits (212), Expect = 1e-21
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
                   VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ 
Sbjct: 15  FQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 74

Query: 165 KYS 167
           + S
Sbjct: 75  EKS 77

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 85.5 bits (212), Expect = 1e-21
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
             VIA YD+  NDP +L  ++N+   ++   E HWW  Q+ +G  G +P  Y+ + S 
Sbjct: 20  TVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP 77

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A Length = 114

 Score = 86.2 bits (214), Expect = 2e-21
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVK----ENNKVSH 60
           +  +   W+F  ++R++A+  LL+  +  G+FL+R+S +  G + L VK    +   V H
Sbjct: 7   ETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKH 66

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDTSPLIKPA 106
           Y   KI + +    Y     TF  L +L+  Y          L T P +  A
Sbjct: 67  Y---KIRSLDNGGYYISPRITFPTLQALVQHYSKKGDGLCQKL-TLPCVNLA 114

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 85.6 bits (212), Expect = 2e-21
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 98  DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEV 155
            +       ++ +  V   Y F     ++L F+K + + V+ K E    WW  +N  G+V
Sbjct: 5   SSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQV 64

Query: 156 GSIPVPYVQKYSEG 169
           G +P  YV   S+G
Sbjct: 65  GLVPKNYVVVLSDG 78

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 187

 Score = 86.9 bits (215), Expect = 6e-21
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 13/136 (9%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
                + N  Y+G+M +  A+A+L  + + G FL+RDS      + +  +  ++  H  I
Sbjct: 27  DLLQINNNPCYWGVMDKYAAEALLEGKPE-GTFLLRDSAQEDYLFSVSFRRYSRSLHARI 85

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH-------YLDTSPLIKPATKTIE----K 112
            +  +      +        D+  LL  YK          L ++PLI+    +++     
Sbjct: 86  EQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRTFPFSLQHICRT 145

Query: 113 VIAKYDFDGNDPDDLP 128
           VI       +  D LP
Sbjct: 146 VICNC-TTYDGIDALP 160

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Length = 106

 Score = 84.2 bits (209), Expect = 8e-21
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 13  WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK-----ENNKVSHYIINKI 66
           WYFG + R++A+  LLS     G FL+R+S T  G Y L ++     + + V HY   KI
Sbjct: 7   WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY---KI 63

Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
              +    Y      F  L  L+  Y      L +  L+ P+ K
Sbjct: 64  RKLDNGGYYITTRAQFETLQQLVQHYSERAAGLSS-RLVVPSHK 106

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Length = 125

 Score = 84.3 bits (209), Expect = 1e-20
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 13/112 (11%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENNKVS 59
           D  +   WY   MTR +A+ +L  E   G F+VRDS+   G Y + V           + 
Sbjct: 6   DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSK-AGKYTVSVFAKSTGDPQGVIR 64

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATKT 109
           HY    + +T Q   Y      FS +P L+ +++ +   L +  L  P ++ 
Sbjct: 65  HY---VVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGLIS-RLKYPVSQQ 112

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A* Length = 105

 Score = 83.1 bits (206), Expect = 2e-20
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
          W+F  ++R++A+  LL+    +G+FL+R+S +  G++ L V++ ++     V HY   KI
Sbjct: 6  WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 62

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           N +    Y     TF  L  L+  Y   
Sbjct: 63 RNLDNGGFYISPRITFPGLHELVRHYTNA 91

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 125

 Score = 83.9 bits (208), Expect = 2e-20
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVS 59
              +   WY   +TR +A+ +L  E   GAF+VRDS   LG+Y + V           + 
Sbjct: 11  TNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRH-LGSYTISVFMGARRSTEAAIK 69

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
           HY   +I   +    Y      F  +P L+ +++ +   L T  L  P   
Sbjct: 70  HY---QIKKNDSGQWYVAERHAFQSIPELIWYHQHNAAGLMT-RLRYPVGL 116

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 110

 Score = 83.1 bits (206), Expect = 2e-20
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVS 59
              D   W+ G ++R +++ +L  +   GAF+VR+S+ + G Y + +       +   V 
Sbjct: 6   SGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQV-GMYTVSLFSKAVNDKKGTVK 64

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKP 105
           HY    +    +   Y   +  F  +P L+ +++ +   + T  L  P
Sbjct: 65  HY---HVHTNAENKLYLAENYCFDSIPKLIHYHQHNSAGMITR-LRHP 108

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A Length = 114

 Score = 83.2 bits (206), Expect = 3e-20
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           P     WY G + R E   +L     +G FLVR+S      YVL V  +    H+II  
Sbjct: 11 KPLHEQLWYHGAIPRAEVAELL---VHSGDFLVRESQGK-QEYVLSVLWDGLPRHFIIQS 66

Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
          + N      Y++  + F  +P L+      
Sbjct: 67 LDN-----LYRLEGEGFPSIPLLIDHLLST 91

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus} Length = 164

 Score = 83.5 bits (206), Expect = 6e-20
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
                  + +Y+  +T  EA  +L +E   G FL+RDS+     + L VK  +   +  I
Sbjct: 16  AVRKLQESGFYWSAVTGGEANLLLSAEPA-GTFLIRDSSDQRHFFTLSVKTQSGTKNLRI 74

Query: 64  NKITNT---EQQTCYKIGDKTFSDLPSLLAFYK 93
                +   +           F  +  L+  Y 
Sbjct: 75  QCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYM 107

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 302

 Score = 86.3 bits (213), Expect = 7e-20
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
             H+  +WY G + R +A+  +LS K +G FL+R+S+   G Y   V  +    H +I +
Sbjct: 189 PHHEERTWYVGKINRTQAEE-MLSGKRDGTFLIRESSQR-GCYACSVVVDGDTKHCVIYR 246

Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
              T     +      +  L  L+  Y+   L   
Sbjct: 247 ---TATGFGFAEPYNLYGSLKELVLHYQHASLVQH 278

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 87.5 bits (217), Expect = 1e-19
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           WY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++    
Sbjct: 107 WYHGPVSRNAAEY-LLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD---G 162

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKK 131
             Y   +  F+ L  L+  +        + L  PA K  +  I        + D    ++
Sbjct: 163 KLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTIYG---VSPNYDKWEMER 219

Query: 132 NDILIV 137
            DI + 
Sbjct: 220 TDITMK 225

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
            + L  P+       +A YDF  +  + L   K + L V+  +    W         G +
Sbjct: 32  ENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWV 91

Query: 159 PVPYVQKYS 167
           P  Y+   +
Sbjct: 92  PSNYITPVN 100

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Length = 120

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 14/123 (11%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT-ILGNYVLCVKENNKVSHYI 62
                    WY+G ++R+E    L    D G FLVRD++T + G+Y L +++        
Sbjct: 4   NNMSLQNAEWYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62

Query: 63  INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTS------PLIKPATKTIEKVIA 115
           I       +   Y   D  TFS +  L+  Y+   L          L+ P +K  +  + 
Sbjct: 63  IFH-----RDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVV 117

Query: 116 KYD 118
           K D
Sbjct: 118 KED 120

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus} Length = 152

 Score = 81.9 bits (202), Expect = 2e-19
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
                  + +Y+  +T  EA  +L +E   G FL+RDS+     + L VK  +   +  I
Sbjct: 27  AVRKLQESGFYWSAVTGGEANLLLSAEPA-GTFLIRDSSDQRHFFTLSVKTQSGTKNLRI 85

Query: 64  NKITNT---EQQTCYKIGDKTFSDLPSLLAFYK 93
                +   +           F  +  L+  Y 
Sbjct: 86  QXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYM 118

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 79.7 bits (197), Expect = 2e-19
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQ-NISGEVG 156
           +  +         + I K +     P +L F+K D++ ++   E + W+  + + SG+ G
Sbjct: 6   SGRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEG 65

Query: 157 SIPVPYVQKYSEGMS 171
            +    +++ S   S
Sbjct: 66  LLAAGALRERSGPSS 80

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 79.3 bits (196), Expect = 3e-19
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            + +  +   A  D++ +D   LPFK+NDI+ +  KD+E+ W    ++G+ GS PV +V+
Sbjct: 5   GSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64

Query: 165 KYSE 168
               
Sbjct: 65  ILLS 68

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 50.8 bits (122), Expect = 7e-09
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 217 NAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
           N  D + L  +  DII +T K   N  + G+LNGK G FP  HVE + ++ 
Sbjct: 20  NVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSDV 70

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 86.5 bits (214), Expect = 3e-19
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 6/157 (3%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
           DP     +++G ++R EA+  L  +   +G FL+R     LG YVL +  + +  H+ I 
Sbjct: 3   DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 62

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATKT-IEKVIAKYDFDGN 122
           +  N    T    G K       L  FY          L KP  +    +          
Sbjct: 63  RQLN---GTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLR 119

Query: 123 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
           D     + +    +     E+   +      ++ +  
Sbjct: 120 DAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATT 156

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 76.1 bits (187), Expect = 1e-15
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
             H+R  WY   +TR+EA+  L S  + +G FL+R      G Y L +     V HY+I+
Sbjct: 156 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLIS 214

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHY 96
           +                F  L  L+ + K+  
Sbjct: 215 QDKA---GKYCIPEGTKFDTLWQLVEYLKLKA 243

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 78.8 bits (195), Expect = 3e-19
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           VIAK+D+      +L  KKN+ L ++  D + WW  +N +   G +P  YV++  E
Sbjct: 7   VIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVPSNYVERKLE 61

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 85.0 bits (211), Expect = 5e-19
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           WY G + R E   +L+     G FLVR+S      YVL V  +    H+II  + N    
Sbjct: 15  WYHGAIPRAEVAELLVHS---GDFLVRESQG-KQEYVLSVLWDGLPRHFIIQSLDN---- 66

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAK 116
             Y++  + F  +P L+           PL K +   + + + K
Sbjct: 67  -LYRLEGEGFPSIPLLIDHLLSTQQ---PLTKKSGVVLHRAVPK 106

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 78.1 bits (193), Expect = 5e-19
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
             V+AK+D+      +L  KKN+ L ++  D + WW  +N   + G +P  YV++ +
Sbjct: 8   VVVVAKFDYVAQQEQELDIKKNERLWLL-DDSKSWWRVRNSMNKTGFVPSNYVERKN 63

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus} Length = 141

 Score = 80.3 bits (198), Expect = 6e-19
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN--YVLCVKENNKVSHYII 63
                  WY G   R+ A+  L     +G+FL+R S+       Y L    N +V +  +
Sbjct: 18  AELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPV 77

Query: 64  NKITNTEQQTCYKIG-----DKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKY 117
             I  T+Q   Y +G     ++ F  +  ++  ++ + L    LI     T +    KY
Sbjct: 78  RFIEATKQ---YALGKKKNGEEYFGSVVEIVNSHQHNPL---VLIDSQNNTKDSTRLKY 130

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens} Length = 141

 Score = 79.9 bits (197), Expect = 7e-19
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
                 +  WY+G +TR EA+  L +  D G+FLVRDS+       L  + + K  H  I
Sbjct: 17  ELKKLAKQGWYWGPITRWEAEGKLANVPD-GSFLVRDSSDDRYLLSLSFRSHGKTLHTRI 75

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
              +N       +   +  + +  L+      
Sbjct: 76  EH-SNGRFSFYEQPDVEGHTSIVDLIEHSIGD 106

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 77.2 bits (190), Expect = 2e-18
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
           S +          VIAK+D+      +L  KKN+ L ++  D + WW  +N +   G +P
Sbjct: 21  SLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVP 79

Query: 160 VPYVQK 165
             YV++
Sbjct: 80  SNYVER 85

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 76.6 bits (189), Expect = 3e-18
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 157
           T  L       +   +A YD++    DDL F K +   +++  E  WW A++++ GE G 
Sbjct: 4   TGTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGY 63

Query: 158 IPVPYVQK 165
           IP  YV  
Sbjct: 64  IPSNYVAP 71

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 76.2 bits (188), Expect = 3e-18
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYV 163
                       Y +  + PD+L  +++++L V+   D E W  A+N  G+VG +P  Y+
Sbjct: 8   TLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67

Query: 164 QKYSE 168
           Q  + 
Sbjct: 68  QFPTS 72

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 75.8 bits (187), Expect = 5e-18
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           + V   YDF   + ++L   K+++L V+ +D   WW  ++ SG+ G +P   + + S
Sbjct: 8   KYVKILYDFTARNANELSVLKDEVLEVL-EDGRQWWKLRSRSGQAGYVPCNILGEAS 63

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 208 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           +  K V++   YD TA     L +   ++++V +           +G+ G+ P   + 
Sbjct: 5   SSGKYVKI--LYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILG 60

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 76.7 bits (189), Expect = 5e-18
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 157
           +S      T  +   +A YD++    +DL FKK +   +++  E  WW A++I+ G+ G 
Sbjct: 16  SSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGY 75

Query: 158 IPVPYVQKYSEGMS 171
           IP  YV       +
Sbjct: 76  IPSNYVVPADSIQA 89

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 82.4 bits (204), Expect = 5e-18
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)

Query: 9   DRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVK-----ENNKVSHYI 62
           +   W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V+     + + V HY 
Sbjct: 68  ETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYK 127

Query: 63  INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYD 118
           I  + N      + I  + TFS L  L+  YK         L  P   +  +   + D
Sbjct: 128 IRTLDN----GGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKD 181

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYS 167
           V+A YD++    +DL F+K D ++V+ +    WW A++++  + G IP  YV +  
Sbjct: 11  VVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVD 65

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 75.0 bits (185), Expect = 7e-18
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           +  ++ V+  YDF   +  +L  K+ D+L V+  D   WW  ++ +G+ G +P   +  Y
Sbjct: 5   SGALKWVLCNYDFQARNSSELSVKQRDVLEVL-DDSRKWWKVRDPAGQEGYVPYNILTPY 63

Query: 167 SEGMS 171
               S
Sbjct: 64  PAAAS 68

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 75.2 bits (185), Expect = 9e-18
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGS 157
           + PL  P     + +    D+   D     F++ + L V+S +   WW A ++ +G    
Sbjct: 6   SGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGG-WWKAISLSTGRESY 64

Query: 158 IPVPYVQKYS 167
           IP   V + S
Sbjct: 65  IPGICVARVS 74

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 74.6 bits (184), Expect = 1e-17
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
            K+   Y+F+  +P +L   + + L V+    + WW  +N +G  G IP   ++  S
Sbjct: 8   LKMQVLYEFEARNPRELTVVQGEKLEVL-DHSKRWWLVKNEAGRSGYIPSNILEPLS 63

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score = 81.0 bits (199), Expect = 1e-17
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 14/132 (10%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL-GNYVLCVKENNKVSHYI 62
                    WY+G ++R+E    L    D G FLVRD++T + G+Y L +++        
Sbjct: 3   NNMSLQNAEWYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61

Query: 63  INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTS------PLIKPATKTIEKVIA 115
           I           Y   D  TFS +  L+  Y+   L          L+ P +K  +  + 
Sbjct: 62  IFHRDGK-----YGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVV 116

Query: 116 KYDFDGNDPDDL 127
           K D        L
Sbjct: 117 KEDNIEAVGKKL 128

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score = 75.3 bits (184), Expect = 1e-15
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
           HD  +W  G   R +A+  LL  K +G FLVR+S+   G Y   V  + +V H +INK  
Sbjct: 298 HDEKTWNVGSSNRNKAEN-LLRGKRDGTFLVRESSKQ-GCYACSVVVDGEVKHCVINK-- 353

Query: 68  NTEQQTCYKIGDKTFSDLPSL 88
            T     +      +S L  L
Sbjct: 354 -TATGYGFAEPYNLYSSLKEL 373

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A Length = 131

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 21/100 (21%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK---------------ENNK 57
           WY   ++R +A A LL +KD GAFL+RDS++  G Y L +K                   
Sbjct: 22  WYKPHLSRDQAIA-LLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQL 80

Query: 58  VSHYIINKITNTEQQTCYKIGDK--TFSDLPSLLAFYKVH 95
           V H++I       +    K       F  L +L++ + + 
Sbjct: 81  VRHFLIET---GPKGVKIKGCPSEPYFGSLSALVSQHSIS 117

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 73.4 bits (181), Expect = 2e-17
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +   +KYDF   +  +L   K+D+L ++  D   WW  +N SG+ G +P   +     
Sbjct: 2   KYAKSKYDFVARNSSELSVMKDDVLEILD-DRRQWWKVRNASGDSGFVPNNILDIMRT 58

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 73.5 bits (181), Expect = 3e-17
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+A YD+    P ++  KK DIL +++   + WW  + ++   G +P  YV+K
Sbjct: 6   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 59

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 51.2 bits (123), Expect = 4e-09
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 273
           YD        + ++ GDI+ +  +     W+ E+N + G  P  +V+ +   +++   N 
Sbjct: 12  YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSASRENL 71

Query: 274 NG 275
            G
Sbjct: 72  GG 73

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 73.1 bits (180), Expect = 3e-17
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           E+ +A  D+   D   L F + + ++++ +    WW  +  +G  G IP  +V K+S   
Sbjct: 8   EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGE-RAGCCGYIPANHVGKHSGPS 66

Query: 171 S 171
           S
Sbjct: 67  S 67

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
            D  A     L    G+ I + +      W GE  G  G+ P  HV 
Sbjct: 14  ADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVG 60

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 73.5 bits (181), Expect = 4e-17
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYV 163
            +  +    +A Y F+G+    +   + + L ++ +D+ + W   +   G  G +P  Y+
Sbjct: 2   SSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYL 61

Query: 164 QKYSE 168
           +  S 
Sbjct: 62  RVTSG 66

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 73.2 bits (180), Expect = 5e-17
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
                 E V+A YD+    P ++  KK DIL +++   + WW  + ++   G +P  YV+
Sbjct: 12  SDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVK 70

Query: 165 KYSEG 169
           K +  
Sbjct: 71  KLAAA 75

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           YD        + ++ GDI+ +  +     W+ E+N + G  P  +V+ +    + 
Sbjct: 24  YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAAWSH 78

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 79.3 bits (196), Expect = 6e-17
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
                  W+ G +TR++A+ +L   +  G FLVR+S    G+Y LCV    KV HY I  
Sbjct: 75  TKLSLMPWFHGKITREQAERLLYPPE-TGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY 133

Query: 66  ITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDP 124
             +        I ++  F +L  L+  Y         L     K           D    
Sbjct: 134 HASK-----LSIDEEVYFENLMQLVEHYTTD---ADGLCTRLIKPKVMEGTVAAQDEFYR 185

Query: 125 DDLPFKKNDI 134
                   ++
Sbjct: 186 SGWALNMKEL 195

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVP 161
           I+ +  +  + IAKY+F G    DLPF K D+L +V+  ++ +W+ A+N  G  G IP  
Sbjct: 4   IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63

Query: 162 YVQKYSEGMSILSL 175
           YVQK     +   L
Sbjct: 64  YVQKREGVKAGTKL 77

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 71.9 bits (177), Expect = 1e-16
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
             VIA + ++ +   DL F+K + L ++ +  E WW AQ+++ G+ G IP  +V K
Sbjct: 7   NLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 61

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 71.9 bits (177), Expect = 1e-16
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+  YD+    P +L  KK DIL +++   + WW  + ++G  G +P  Y++K
Sbjct: 7   ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIE-VNGRQGFVPAAYLKK 60

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           YD        L ++ GDI+ +  +     W+ E+NG+ G  P  +++ +
Sbjct: 13  YDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 72.9 bits (179), Expect = 1e-16
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPY 162
                   + +A+Y F G+   +L F+K + + ++ K  E+W+  +   +G  G  P  Y
Sbjct: 11  TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70

Query: 163 VQKYSE 168
           VQ   E
Sbjct: 71  VQVSRE 76

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFT 257
           P +  ++       Y         L    G+ I + +      +EG +   G+ G FP +
Sbjct: 10  PTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPAS 69

Query: 258 HVEFIPTNETSV 269
           +V+        +
Sbjct: 70  YVQVSREPRLRL 81

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 71.6 bits (176), Expect = 1e-16
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           T   V+A YD+  N  D+L   + DI+ V  KD E WW      G+ G  P  +V  
Sbjct: 5   TAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS 61

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNE 266
            A     L +  GDII+V   +    W G +  G+ G+FP  HV      +
Sbjct: 16  TANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETLYQ 66

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens} Length = 125

 Score = 73.3 bits (180), Expect = 1e-16
 Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN---NKVSHYI 62
          D  +     F  ++R+EA  +L      G  ++R  +    NY + +++     ++ HY 
Sbjct: 10 DVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSD-SRNYSITIRQEIDIPRIKHY- 67

Query: 63 INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH 95
            K+ +  Q    ++    T  +L S++ ++   
Sbjct: 68 --KVMSVGQNYTIELEKPVTLPNLFSVIDYFVKE 99

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 71.3 bits (175), Expect = 2e-16
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--------GEVGSIPVPY 162
           +  +A +D+     +DL F+  D L V+    E WW A+++            G IP  Y
Sbjct: 8   QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67

Query: 163 VQKYS 167
           V + S
Sbjct: 68  VAEDS 72

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 71.1 bits (175), Expect = 2e-16
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNI-SGEVGSIPVPYV 163
           A+K+ ++ I +YDF     D+L  K  D + ++  K  + WW  Q + SG+ G +P  ++
Sbjct: 2   ASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 61

Query: 164 QKYSE 168
           +   +
Sbjct: 62  EPVRD 66

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 70.8 bits (174), Expect = 3e-16
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-------NISGEVGSIPVPYV 163
           E V+A YD+    P ++  KK DIL +++   + WW  +             G +P  YV
Sbjct: 2   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61

Query: 164 QK 165
           +K
Sbjct: 62  KK 63

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 71.7 bits (176), Expect = 3e-16
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 98  DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGS 157
            +S    PA   + +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G 
Sbjct: 22  PSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGL 80

Query: 158 IPVPYVQKYSE 168
            P  YV+  ++
Sbjct: 81  FPSNYVKMTTD 91

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
           PAF  V QV     YD  A     L    G +I V   +    W+GE+NG TG FP  +V
Sbjct: 29  PAFHPVCQVIA--MYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86

Query: 260 EFIPTNETS 268
           +    +   
Sbjct: 87  KMTTDSSGP 95

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 70.8 bits (174), Expect = 3e-16
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSE 168
             A YD++    DDL F K +   +++  E  WW A++++ GE G IP  Y+     
Sbjct: 8   FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDR 64

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 70.8 bits (174), Expect = 4e-16
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            + + + + +A + + G    +L F++ D+L +  +    WW  +  +G  G IP  Y+ 
Sbjct: 5   SSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGE-HNGMRGLIPHKYIT 63

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 273
           +  T      L    GD++++ +   +  W GE NG  G  P  ++      E  V   G
Sbjct: 17  FAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQVVGAG 76

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 70.3 bits (173), Expect = 4e-16
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           E  IAK+D+ G    +L FKK   L++  +  E WW  +  +G  G +P  Y+ 
Sbjct: 7   EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGR-HNGIDGLVPHQYIV 59

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           G  + +        WEG  NG  G  P  ++ 
Sbjct: 28  GASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 70.9 bits (174), Expect = 4e-16
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYS 167
            +   +A YD++     DL F K +   ++      WW A+++ +GE G IP  YV    
Sbjct: 5   GVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64

Query: 168 E 168
            
Sbjct: 65  S 65

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPTNETSVETNGN 274
           NA   T L    G+  ++ +      WE      G+TG+ P  +V  + + +   +    
Sbjct: 16  NATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQGEQKLISE 75

Query: 275 GDIH 278
            D+H
Sbjct: 76  EDLH 79

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 70.9 bits (174), Expect = 4e-16
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 157
            +P I+ A      V+A YD++    +DL F+K D ++V+ +  E WW A++++  + G 
Sbjct: 14  NTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGY 72

Query: 158 IPVPYVQK 165
           IP  YV +
Sbjct: 73  IPSNYVAR 80

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 70.3 bits (173), Expect = 5e-16
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQKYSE 168
            + IAK++F+G+   ++ F+K + + ++ + +E+W+  +   +   G  P+ YV   S 
Sbjct: 8   GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISG 66

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIP 263
           N   +  +    G+ I + +      +EG + G  + G FP T+V+ I 
Sbjct: 17  NGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIS 65

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 70.5 bits (173), Expect = 5e-16
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISG 153
           S  I P+   +E   A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G
Sbjct: 6   SEPIDPSK--LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNG 63

Query: 154 EVGSIPVPYVQK 165
            +G IP  Y++ 
Sbjct: 64  NIGYIPYNYIEI 75

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 69.6 bits (171), Expect = 6e-16
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 112 KVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY 166
              A YDF G   P +LP KK D++ +  ++   W   + +   + G +P  Y++ +
Sbjct: 2   MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKPH 58

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVE 260
           L L+ GD+I +T+   +G   G+L    K G  P  +++
Sbjct: 18  LPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 70.1 bits (172), Expect = 6e-16
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +  +I    A +D       +L FK  D++ V+    + WW  Q I  E G  P  +V+
Sbjct: 5   SSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQ-IDDEEGWFPASFVR 63

Query: 165 KYSE 168
            +  
Sbjct: 64  LWVN 67

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVE 270
           +D        L  + GD+IKV   +    W G+++ + G FP + V      E  VE
Sbjct: 17  WDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVE 73

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 69.5 bits (171), Expect = 6e-16
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           + V A +DF+  +  +L FK+ D++ +++KD+ +WW  Q ++   G  P  YV  Y+
Sbjct: 3   KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ-LNNRRGIFPSNYVCPYN 58

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L  + GD+I +   +    WEG+LN + G FP  +V 
Sbjct: 19  LAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 69.5 bits (171), Expect = 7e-16
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +E V A Y FD     DL  K  D + ++ K    W+     +G  G  P  YV+
Sbjct: 2   MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGS-CNGRTGIFPANYVK 55

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 47.9 bits (115), Expect = 5e-08
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L L+ GD +++ +      ++G  NG+TG FP  +V+
Sbjct: 19  LGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 69.5 bits (171), Expect = 7e-16
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           ++   A Y F+   PD+L F++ DI+ +    + +WW      G  G IP  YV +
Sbjct: 3   VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAE 57

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 208 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
            +VK  R    Y         L  E GDII +T  +    W+G   G+TG  P  +V 
Sbjct: 1   GQVKVFRA--LYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 69.6 bits (171), Expect = 8e-16
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
             +   E+ IA Y +   +P DL F + + ++V  KD E WWT   I    G  P  YV+
Sbjct: 3   SGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGE-WWTGS-IGDRSGIFPSNYVK 60

Query: 165 KYSEGMS 171
               G S
Sbjct: 61  PKDSGPS 67

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           G+ I VT+ +    W G +  ++G FP  +V+   +  +S
Sbjct: 30  GEEILVTQKD-GEWWTGSIGDRSGIFPSNYVKPKDSGPSS 68

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 69.1 bits (170), Expect = 8e-16
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +    A YDF+  + D+L F+  +++ V+      WWT + +  ++G  P  YV  
Sbjct: 1   VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR-LHNKLGLFPANYVAP 55

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           V+  R    YD  A     L    G++++V  ++    W G L+ K G FP  +V  +
Sbjct: 1   VRWARA--LYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 69.6 bits (171), Expect = 9e-16
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 95  HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
           H +              +  A +DF GN   +L FK  D++ ++S+  + W     + G 
Sbjct: 3   HKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGA 61

Query: 155 VGSIPVPYVQK 165
            G  P+ +V+ 
Sbjct: 62  TGIFPLSFVKI 72

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           L  + GD+I +         EG + G TG FP + V+ + 
Sbjct: 35  LNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK 74

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 69.2 bits (170), Expect = 1e-15
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
              +A Y F   + +DL  +  DI+ ++    E WW  + I   +G  P  +VQ+ S 
Sbjct: 8   NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGK-IQDRIGFFPANFVQRLSG 64

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 47.6 bits (114), Expect = 7e-08
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           L++  GDII + + +    W+G++  + G FP   V+ + 
Sbjct: 24  LEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS 63

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 75.7 bits (186), Expect = 1e-15
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK-----ENNKVS 59
           D      WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V      +   V 
Sbjct: 143 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 202

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATK 108
           HY I K+ +      Y      F+ L  L+A+Y  H       L      
Sbjct: 203 HYKIRKLDSGG---FYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPT 249

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 61.4 bits (149), Expect = 8e-11
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
           P    +   +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 80  PLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139

Query: 164 QK 165
             
Sbjct: 140 AP 141

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 111 EKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYVQ 164
               A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G +G IP  Y++
Sbjct: 8   HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 67

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 111 EKVIAKYDFDGND-PDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 168
            K  A YDF G+    +LP KK DI+ +   +   W  A+ +   + G +P  Y+  Y +
Sbjct: 3   PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD 62

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNETSV 269
           L L+ GDI+ +++   +G    +L    K G  P  ++        +V
Sbjct: 20  LPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTV 67

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 68.7 bits (169), Expect = 1e-15
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNI-SGEVGSIPVPYVQK 165
           +E+ I +YDF     D+L  K  D + ++  K  + WW  Q + SG+ G +P  +++ 
Sbjct: 2   MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 68.7 bits (169), Expect = 1e-15
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +  A +DF GN   +L FK  D++ ++S+  + W     + G  G  P+ +V+
Sbjct: 6   RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGATGIFPLSFVK 57

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 47.5 bits (114), Expect = 7e-08
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           +K +R    +D T      L  + GD+I +         EG + G TG FP + V+ +
Sbjct: 2   IKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 69.4 bits (170), Expect = 2e-15
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
           +   I+   K   KV A YDF+  + ++L FK  +I+IV+   + +WW  +     +G  
Sbjct: 6   SGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE-NHRGIGLF 64

Query: 159 PVPYVQKYSE 168
           P  +V     
Sbjct: 65  PSNFVTTNLN 74

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVET 271
           L  + G+II V   +    W+GE +   G FP   V      ET    
Sbjct: 34  LTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAA 81

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 69.5 bits (170), Expect = 2e-15
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 110 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 163
           +E   A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G +G IP  Y+
Sbjct: 14  LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 73

Query: 164 QKYSE 168
           +    
Sbjct: 74  EIIKR 78

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
           +E+ +   ++   +  +L  +  +++ V+ K+E  WW     S E G +P  Y++  + G
Sbjct: 8   LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVST-SEEQGWVPATYLEAQNSG 66

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 48.8 bits (117), Expect = 3e-08
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 210 VKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
           ++Q  V + Y K     L L+ G+++ V + N +G W    + + G  P T++E   +  
Sbjct: 8   LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGP 67

Query: 267 TS 268
           +S
Sbjct: 68  SS 69

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 165
           +V A YD+DG + D+L FK  D L  + + DE+ W   +  SG++G  P  YV+ 
Sbjct: 5   RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 219 YDKTA-----LKLEIGDIIKVT-KTNINGQWEGELN-GKTGHFPFTHVEFI 262
           YD        L  + GD +    + +  G   G L+ G+ G +P  +VE I
Sbjct: 10  YDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSEG 169
             V+A YD+    PDDL F+K D ++V+ +  E WW A++++  + G IP  YV +   G
Sbjct: 4   IIVVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVDSG 62

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +   A Y F+   PD+L F++ DI+ +    + +WW      G  G IP  YV + S 
Sbjct: 8   KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAEQSG 64

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           Y         L  E GDII +T  +    W+G   G+TG  P  +V    
Sbjct: 14  YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS 63

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 68.0 bits (167), Expect = 2e-15
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
             V A +DFD  +  +L F++ D + V+   + +WW      G+ G  P  YV   +
Sbjct: 3   TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYVTAVN 58

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           +  +   L    GD I V   +    W+G  +G+TG FP  +V  +
Sbjct: 12  DPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 68.0 bits (167), Expect = 2e-15
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
              +A YDF  +  + L   K + L V+  +    W         G +P  Y+   
Sbjct: 6   NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPV 61

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 260
           YD  A     L +  G+ ++V   N NG+W E +     G  P  ++ 
Sbjct: 12  YDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYIT 59

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 68.0 bits (167), Expect = 3e-15
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
            +  A  ++ G +P DL F K D++++  + +E+W+  + I+G  G  P   V+  S 
Sbjct: 8   PRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGE-INGVSGIFPASSVEVISG 64

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           LK   GD+I + +      ++GE+NG +G FP + VE I 
Sbjct: 24  LKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVIS 63

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 68.0 bits (167), Expect = 3e-15
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
            K   +V A + ++   P+DL F++ DI++V+SK  E W   +   G+VG  P  +V+  
Sbjct: 2   LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGE-SKGKVGIFPKVFVEDS 60

Query: 167 S 167
           +
Sbjct: 61  A 61

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 17/41 (41%), Positives = 19/41 (46%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           L+ + GDII V         EGE  GK G FP   VE   T
Sbjct: 22  LEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSAT 62

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 68.0 bits (167), Expect = 3e-15
 Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQKYSE 168
           + IAK++F+G+   ++ F+K + + ++ + +E+W+  +   +   G  P+ YV     
Sbjct: 8   EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIP 263
           +    G+ I + +      +EG + G  + G FP T+V+ I 
Sbjct: 23  MSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 68.0 bits (167), Expect = 3e-15
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           ++    K+DF    P +L  +K DI+ +  + +++W   +   G +G  P  YV+
Sbjct: 1   MKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGE-HHGRLGIFPANYVE 54

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           +K  R+   +D  A     L L+ GDI+ + K       EGE +G+ G FP  +VE +P 
Sbjct: 1   MKAARL--KFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPL 58

Query: 265 NETS 268
               
Sbjct: 59  EHHH 62

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 68.1 bits (167), Expect = 3e-15
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            ++    + IAK+D+ G    +L FKK   L++  +  + WW  +  +G  G IP  Y+ 
Sbjct: 4   GSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGR-HNGIDGLIPHQYIV 62

Query: 165 KYSE 168
               
Sbjct: 63  VQDT 66

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 47.3 bits (113), Expect = 9e-08
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           +D        L  + G  + + +   +  WEG  NG  G  P  ++    T+  S
Sbjct: 16  FDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGPS 70

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 68.2 bits (167), Expect = 3e-15
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN----ISGEVGSIP 159
           +       K +  +DF     ++L F+  D+  V  K+E+ WW         +   G +P
Sbjct: 4   RDQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVP 63

Query: 160 VPYVQKYS 167
             Y+ +  
Sbjct: 64  HNYLAERE 71

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 68.0 bits (167), Expect = 3e-15
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A     +V A YDF+  + ++L FK  +++ V+   + +WW  +      G  P  +V 
Sbjct: 1   AGHMARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGE-NHRGTGLFPSNFVT 58

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 44.9 bits (107), Expect = 5e-07
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 206 AFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           A    ++VR    YD  A     L  + G++I V   +    W+GE +  TG FP   V 
Sbjct: 1   AGHMARRVRA--LYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58

Query: 261 FIPT 264
              +
Sbjct: 59  TDLS 62

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 67.4 bits (165), Expect = 6e-15
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW--TAQNISGEVGSIPVPY 162
            +   + +V   YD   ++ D+L F + +++IV  ++++ WW    +      G  PV +
Sbjct: 5   SSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSF 64

Query: 163 VQKYSE 168
           V   S+
Sbjct: 65  VHILSD 70

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNG---KTGHFPF 256
            +  +V++V+    YD  A     L    G++I VT       W G + G   + G FP 
Sbjct: 5   SSGNKVRRVKT--IYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPV 62

Query: 257 THVEFIPTNETS 268
           + V  +  +  S
Sbjct: 63  SFVHILSDSGPS 74

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 67.3 bits (165), Expect = 6e-15
 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPY 162
           + A+    + IAKYDF     D+L FK+ DIL V++++ +++W+ A+ ++G+ G IP  Y
Sbjct: 3   RRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE-LNGKDGFIPKNY 61

Query: 163 VQKYSE 168
           ++    
Sbjct: 62  IEMKPH 67

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFIPTNETSVE 270
           YD  A     L  + GDI+KV     +  W + ELNGK G  P  ++E  P  E  V 
Sbjct: 16  YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFIVT 73

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 67.3 bits (165), Expect = 7e-15
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
           EK +    +     D++ F+K   + V+ K+ E WW  +   G+ G  P  Y++K  + 
Sbjct: 9   EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIR-YLGKEGWAPASYLKKAKDS 66

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           +  E G  ++V + N+ G W     GK G  P ++++    +  S
Sbjct: 25  IGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSGPS 69

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 67.3 bits (165), Expect = 7e-15
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           ++  A YD+   +PD+L     DIL V+ + E+ WWT +  +G+ G +P  Y++K S 
Sbjct: 9   QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVE-RNGQRGFVPGSYLEKLSG 65

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
            ++ R    YD TA     L L  GDI++V     +G W  E NG+ G  P +++E + 
Sbjct: 8   AQEYRA--LYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS 64

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 66.9 bits (164), Expect = 7e-15
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
               AK+DF      +LP +K DI+ +  + +++W+  +   G VG  P  Y++  S 
Sbjct: 8   RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGE-HHGRVGIFPRTYIELLSG 64

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           L L+ GDI+ + K      +EGE +G+ G FP T++E + 
Sbjct: 24  LPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLS 63

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 66.9 bits (164), Expect = 9e-15
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG 169
              +A + +  + P++L  +K + + V+ K ++ W    ++ +G  G  P  YV   S  
Sbjct: 8   NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGP 67

Query: 170 MS 171
            S
Sbjct: 68  SS 69

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
           L L+ G+ I+V     +G  +G   L G+TG FP  +V  + 
Sbjct: 24  LDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 67.0 bits (164), Expect = 9e-15
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPY 162
                  +V A Y F+G  P DL F+  D + V+SK + H  WW  + + G+ G  P  Y
Sbjct: 12  GNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK-LRGQTGIFPANY 70

Query: 163 VQKYSE 168
           V   S 
Sbjct: 71  VTMNSG 76

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFIP 263
           L  + GD I V     +    WEG+L G+TG FP  +V    
Sbjct: 34  LNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS 75

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 66.6 bits (163), Expect = 1e-14
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 94  VHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG 153
           + +               KV A YDF+  + ++L FK  +I+ V+   + +WW  +    
Sbjct: 1   MGHHHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE-THQ 59

Query: 154 EVGSIPVPYVQ 164
            +G  P  +V 
Sbjct: 60  GIGLFPSNFVT 70

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 196 RKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGK 250
              H    +      ++VR    YD  A     L  + G+II V   +    W+GE +  
Sbjct: 3   HHHHHHSHMNHQHEARKVRA--IYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQG 60

Query: 251 TGHFPFTHVE 260
            G FP   V 
Sbjct: 61  IGLFPSNFVT 70

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK-----ENNKVS 59
           D      WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V      +   V 
Sbjct: 60  DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYD 118
           HY I K+ +      Y      F+ L  L+A+Y  H       L      +  +      
Sbjct: 120 HYKIRKLDSGG---FYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176

Query: 119 FDGN-DPDDLPFKK 131
                  + L  + 
Sbjct: 177 DAWEIPRESLRLEV 190

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 67.1 bits (164), Expect = 9e-13
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
           +   +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV  
Sbjct: 2   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP 58

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
            P   P +  +EKV+A YD+  +  D+L F++  I+ V+ K+++ W+    ++G  G  P
Sbjct: 8   DPPWAPRS-YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV-MNGVTGLFP 65

Query: 160 VPYVQKYSE 168
             YV+  S 
Sbjct: 66  GNYVESISG 74

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 208 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           + +++V     YD T      L  + G II V K N +G +EG +NG TG FP  +VE I
Sbjct: 15  SYLEKVVA--IYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 72

Query: 263 P 263
            
Sbjct: 73  S 73

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQ 164
            +  Y+F     D+L     + L + +  +  W+ A+ I   G  G +PV YV+
Sbjct: 6   AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR 59

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
                 +  A Y +D  D D+L F  NDI+ ++ +D   WWT + + G+ G  P  YV K
Sbjct: 1   GPLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGR-LRGKQGLFPNNYVTK 59

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 50.7 bits (122), Expect = 5e-09
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           +A D   L     DII + K + +G W G L GK G FP  +V  I
Sbjct: 15  DAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 66.5 bits (163), Expect = 1e-14
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
             P   P         A YDF+  +  +L F++ D++ + ++ +E+W+    + G+ G  
Sbjct: 3   MDPEFMPPLD-QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGM-LHGQSGFF 60

Query: 159 PVPYVQK 165
           P+ YVQ 
Sbjct: 61  PLSYVQV 67

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 50.7 bits (122), Expect = 7e-09
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           L    GD+I +T       +EG L+G++G FP ++V+ + 
Sbjct: 30  LGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLV 69

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           E     + F     ++L     +I+ V+ K  ++W T    +G+ G +P  Y++  S
Sbjct: 8   EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVM-FNGQKGLVPCNYLEPVS 63

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 48.0 bits (115), Expect = 5e-08
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           +         L++  G+I+ V K   +       NG+ G  P  ++E + 
Sbjct: 14  FGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS 63

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 110 IEKVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           I K  A Y +D +  D  ++ F++N+IL V   +   WW A+  +GE G IP  YVQ 
Sbjct: 5   IYKAKALYPYDADDDDAYEISFEQNEILQVSDIEGR-WWKARRANGETGIIPSNYVQL 61

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 220 DKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNE 266
           D   +  E  +I++V+       W+    NG+TG  P  +V+ I   E
Sbjct: 20  DAYEISFEQNEILQVSDIE-GRWWKARRANGETGIIPSNYVQLIDGPE 66

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD----EEHWWTAQNISGE 154
           +S       +  +   A Y F   +P++L    N  L ++          WW A+ ++G+
Sbjct: 2   SSGSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE-VNGK 60

Query: 155 VGSIPVPYVQKYSEGMS 171
            G +P  Y++K   G S
Sbjct: 61  KGYVPSNYIRKTESGPS 77

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 9/59 (15%)

Query: 219 YDKTA-----LKLEIGDIIKVT----KTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           Y   A     L +     +K+      T     W  E+NGK G+ P  ++    +  +S
Sbjct: 20  YTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSS 78

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 65.4 bits (160), Expect = 3e-14
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +  A  DF+ +D D+L F+KNDI+ ++S+ +EH W  + ++G  G  P  +V+   E
Sbjct: 9   RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVEVLDE 64

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 15/50 (30%), Positives = 17/50 (34%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 273
           L     DII +        W GELNG  G FP   VE +           
Sbjct: 24  LGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAS 73

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 64.9 bits (159), Expect = 4e-14
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +V A YD+D    D+L FK+ D +IV  KD   WW  + ++G+ G +P  YVQ 
Sbjct: 5   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQD 57

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           YD  A     L  + GD I V + +  G WEGELNGK G  P  +V+ I
Sbjct: 10  YDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 66.3 bits (162), Expect = 4e-14
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYSEGMS 171
           I  YDF     D+L     + L + +     W+ A+ I   G  G +PV +V        
Sbjct: 9   IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATG 68

Query: 172 ILSLRNLHLDSSSHHVPQ 189
             +  ++  D  S ++P 
Sbjct: 69  YATGNDVIEDIKSVNLPT 86

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 64.9 bits (159), Expect = 4e-14
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +  +  +    + +   + D+L  K  DI+ VV + EE WW    ++G+ G  P  ++++
Sbjct: 3   SGSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGMFPSNFIKE 61

Query: 166 YSE 168
            S 
Sbjct: 62  LSG 64

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 208 ARVKQVRV---PNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           +  ++ +V       +   L+L++GDII+V      G WEG LNGKTG FP   ++ + 
Sbjct: 5   SSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 63

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 64.5 bits (158), Expect = 4e-14
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
           +  K +A Y F G +  DLPF+K D++ ++ K +    WWT + ++G  G  P  YV+
Sbjct: 2   SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR-VNGREGIFPANYVE 58

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 44.5 bits (106), Expect = 9e-07
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 229 GDIIKVTKT--NINGQWEGELNGKTGHFPFTHVEFI 262
           GD+I + K   + N  W G +NG+ G FP  +VE +
Sbjct: 25  GDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 64.6 bits (158), Expect = 6e-14
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
                YDF+  +  +L FK+ DI+ + ++ +E+W+    I GE G  P+ YV+ 
Sbjct: 5   CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGM-IHGESGFFPINYVEV 57

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETN 272
           L  + GDII +T       +EG ++G++G FP  +VE I   E     +
Sbjct: 20  LGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLEHHHHHH 68

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 64.2 bits (157), Expect = 8e-14
 Identities = 17/61 (27%), Positives = 25/61 (40%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             V A YD+     D+L F +  ++  VSK+   WW     +      P  YV+  S   
Sbjct: 8   RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGPS 67

Query: 171 S 171
           S
Sbjct: 68  S 68

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGK-TGHFPFTHVEFI 262
            A     L    G +I        G W+G+   +   +FP  +VE I
Sbjct: 17  KAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI 63

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 64.8 bits (158), Expect = 8e-14
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 98  DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGS 157
                 K   +   +    + +   + D+L  K  DI+ VV + EE WW    ++G+ G 
Sbjct: 6   QQMGTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGM 64

Query: 158 IPVPYVQKYSE 168
            P  ++++ S 
Sbjct: 65  FPSNFIKELSG 75

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 209 RVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           R ++ +V  A+         L+L++GDII+V      G WEG LNGKTG FP   ++ + 
Sbjct: 17  RRRRCQV--AFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 74

Query: 264 TNETSVETNG 273
                +  + 
Sbjct: 75  GESDELGISQ 84

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 64.3 bits (157), Expect = 8e-14
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +      V A+++F   + D+L   K DI+ V   +E  WW    ++G  G  P  YV+
Sbjct: 5   SSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT-LNGRTGWFPSNYVR 63

Query: 165 KYSE 168
           +   
Sbjct: 64  EIKS 67

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
            + +    V+    ++        L +  GDII VT+    G WEG LNG+TG FP  +V
Sbjct: 5   SSGSHQLIVKA--RFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

Query: 260 EFIPTNETSVETNG 273
             I ++E S  ++G
Sbjct: 63  REIKSSERSGPSSG 76

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 63.8 bits (156), Expect = 9e-14
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
             V AK++F   + D+L F K D++ V   +E  WW     +G  G  P  YV++
Sbjct: 5   SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVRE 58

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 50.7 bits (122), Expect = 5e-09
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           L    GD+I VT+    G WEG  NG+TG FP  +V  I
Sbjct: 21  LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 64.3 bits (157), Expect = 9e-14
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVP 161
             +  +  V A YD++G   D+L F +  I+ +++K   D++ +W  +  +G +G  P  
Sbjct: 3   SGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGE-FNGRIGVFPSV 61

Query: 162 YVQKYSEGMS 171
            V++ S G S
Sbjct: 62  LVEELSSGPS 71

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 219 YDKTA-----LKLEIGDIIKVTK---TNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           YD        L    G II++      + +G WEGE NG+ G FP   VE + +  +S
Sbjct: 15  YDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGPSS 72

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 63.8 bits (156), Expect = 1e-13
 Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           + +    +++   + D+L  K  DI+ +  + EE WW+   ++ ++G  P  +V++   
Sbjct: 1   MRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVKELEL 58

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           ++Q +V   ++        L+L++GDII + +    G W G LN K G FP   V+ +  
Sbjct: 1   MRQCKV--LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEL 58

Query: 265 NETS 268
               
Sbjct: 59  EHHH 62

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE 168
           ++ +A YDF+  + ++L   + DI+ +  K  + W  A+N    + G +P  +V     
Sbjct: 6   QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP 64

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
           L+L  GDI+ ++  +  G    E     KTG  P   V +I 
Sbjct: 22  LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 63.3 bits (155), Expect = 1e-13
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           + I ++D+     D+L     +I+  + K++  WW  Q I+G  G  P  +V++  +
Sbjct: 3   EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQ-INGRRGLFPDNFVREIKK 58

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           + +  V   +D  A     L + +G+II   +    G WEG++NG+ G FP   V  I
Sbjct: 1   MVEAIV--EFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 63.8 bits (156), Expect = 1e-13
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
              A YDF+  +  +L FK+ DI+ + ++ +E+W+    + G  G  P+ YV+
Sbjct: 9   CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM-LHGHSGFFPINYVE 60

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 273
           L  + GDII +T       +EG L+G +G FP  +VE +     S  ++G
Sbjct: 24  LGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHSGPSSG 73

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 63.5 bits (155), Expect = 1e-13
 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYV 163
           +  +    +A+Y+F   D  +L  ++ D++ + S+   ++ WW  +  +G +G  P  YV
Sbjct: 3   SGSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGE-TNGRIGWFPSTYV 61

Query: 164 QKYSE 168
           ++   
Sbjct: 62  EEEGI 66

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 224 LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
           L L  GD++++        G W+GE NG+ G FP T+VE      
Sbjct: 24  LSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQS 68

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 63.0 bits (154), Expect = 1e-13
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQ 164
           ++ +A YDF+  + ++L   + DI+ +  K  + W  A+N S  + G +P  +V 
Sbjct: 2   QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262
           L+L  GDI+ ++  +  G    E     KTG  P   V +I
Sbjct: 18  LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           P      +    +++   + D+L  K  DI+ +  + EE WW+   ++ ++G  P  +V+
Sbjct: 2   PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVK 60

Query: 165 KYSE 168
           +   
Sbjct: 61  ELEV 64

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 53.8 bits (130), Expect = 4e-10
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
           P  ++ +Q +V   ++        L+L++GDII + +    G W G LN K G FP   V
Sbjct: 2   PLGSKKRQCKV--LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 59

Query: 260 EFIP 263
           + + 
Sbjct: 60  KELE 63

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 63.0 bits (154), Expect = 2e-13
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 163
           A    E     + + G + D+L F++ +I+ ++SK+  E  WW  + ++G+ G  P  + 
Sbjct: 2   AMGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGE-LNGKEGVFPDNFA 60

Query: 164 QKYS 167
            + S
Sbjct: 61  VQIS 64

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 206 AFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTH 258
           A    +  R    +  T      L    G+II +    T   G W+GELNGK G FP   
Sbjct: 2   AMGAKEYCRT--LFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59

Query: 259 VEFI 262
              I
Sbjct: 60  AVQI 63

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS---GEVGSIPVPYVQKYS 167
           +  ++  D++G++ +   F++   + V+ ++   WW  Q +       G +P  Y++K +
Sbjct: 11  DVYVSIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN 69

Query: 168 EGMS 171
            G S
Sbjct: 70  SGPS 73

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 68.1 bits (165), Expect = 3e-13
 Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 17/194 (8%)

Query: 95  HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
               +            +  A +DF GN   +L FK  D++ ++S+  + W     + G 
Sbjct: 159 VKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGA 217

Query: 155 VGSIPVPYVQK---YSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVK 211
            G  P+ +V+    + E     +    +    +    +        +   +        +
Sbjct: 218 TGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTR 277

Query: 212 QVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE---LNGKTGHFPFTHVEFIPTNETS 268
           +            +   GD++++           +   L  +   FP+         +  
Sbjct: 278 R-EFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPW---------KLH 327

Query: 269 VETNGNGDIHNSTP 282
           +    N  ++N+ P
Sbjct: 328 ITQKDNYRVYNTMP 341

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 62.6 bits (153), Expect = 3e-13
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +   I +YD+D    D+L  +  +I+  V K +E  W    ++G  G  P  +V++   
Sbjct: 1   MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR 59

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 219 YDKTA-----LKLEIGDIIK-VTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
           YD  A     L + +G+II+ V K    G  EGELNG+ G FP   V+ I   
Sbjct: 8   YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE 60

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPV 160
           +   TK+ +     + ++  + D+L  K+ DI+ +++KD  +  WW  + ++G  G  P 
Sbjct: 2   MDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPD 60

Query: 161 PYVQK 165
            +V+ 
Sbjct: 61  NFVKL 65

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNE 266
           L ++ GDI+ +   +    G WEGELNG+ G FP   V+ +P + 
Sbjct: 26  LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDF 70

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
               A Y F     D+L  +K DI+I+  K EE WW    ++G+ G  P  YV++   
Sbjct: 8   RLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS-LNGKKGHFPAAYVEELPS 64

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGD 276
           L LE GDI+ + +    G W G LNGK GHFP  +VE +P+N  +  T  +G 
Sbjct: 24  LNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTATKASGP 76

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 62.9 bits (153), Expect = 3e-13
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIP 159
             T       A +D++    ++L  ++ D + V+S+D     +E WWT Q  SG VG  P
Sbjct: 24  GTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFP 83

Query: 160 VPYVQ 164
             YV 
Sbjct: 84  SNYVA 88

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 13/89 (14%)

Query: 183 SSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKT 237
             HH          +      +              +D  A     L L  GD ++V   
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMGTTPAGPVWTA--VFDYEAAGDEELTLRRGDRVQVLSQ 59

Query: 238 NINGQ-----WEGEL-NGKTGHFPFTHVE 260
           +         W G+L +G+ G FP  +V 
Sbjct: 60  DCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 62.2 bits (152), Expect = 3e-13
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            ++      IA YD+     D++ F  +DI+  +   ++ WW      G  G  P  YV+
Sbjct: 4   GSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVE 62

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 44.5 bits (106), Expect = 8e-07
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
           P  +    +     YD  A     +  +  DII   +   +G W G   G+ G FP  +V
Sbjct: 2   PLGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61

Query: 260 EFI 262
           E  
Sbjct: 62  ELR 64

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 62.2 bits (152), Expect = 4e-13
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
             V AK++F   + D+L F K D++ V   +E  WW     +G  G  P  YV++
Sbjct: 7   LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVRE 60

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           L    GD+I VT+    G WEG  NG+TG FP  +V  I 
Sbjct: 23  LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK 62

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 62.3 bits (152), Expect = 4e-13
 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 163
           +  + +     + ++  + D+L  K+ DI+ +++KD  +  WW  + ++G  G  P  +V
Sbjct: 3   SGSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFV 61

Query: 164 QKYSE 168
           +  S 
Sbjct: 62  KLLSG 66

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 48.0 bits (115), Expect = 5e-08
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIP 263
           L ++ GDI+ +   +    G WEGELNG+ G FP   V+ + 
Sbjct: 24  LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLS 65

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 62.9 bits (153), Expect = 4e-13
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH----WWTAQNISGEVGSIPV 160
                     A+YDF     +++ F+  D+L +  K+++     W  A       G IP 
Sbjct: 12  SGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPA 71

Query: 161 PYVQ 164
            YV+
Sbjct: 72  NYVK 75

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNI----NGQWEGELNGK-TGHFPFTHVEFIPTNETS 268
           YD  A     +    GD++ +          G     L+G+ TG  P  +V+ +      
Sbjct: 24  YDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRGR 83

Query: 269 VETN 272
               
Sbjct: 84  KTIE 87

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 61.8 bits (151), Expect = 4e-13
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQ 164
             A+YD+D  + ++L F +ND +I +   ++ WW  +    G  G  P  YV 
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 7/51 (13%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262
           YD  A     L     D I   +   +  W GEL  +G  G FP  +V   
Sbjct: 7   YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG 57

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 62.0 bits (151), Expect = 5e-13
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
                +      ++  KK DIL +++   + WW  + ++   G +P  YV+K   G
Sbjct: 4   PPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSG 57

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 219 YDKTA----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGN 274
              +A    + ++ GDI+ +  +     W+ E+N + G  P  +V+ + +          
Sbjct: 7   PPYSAGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLAL 66

Query: 275 GDIHNST 281
            D    +
Sbjct: 67  YDYQEKS 73

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 62.0 bits (151), Expect = 6e-13
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
             +A YD+     D++ F  +DI+  +   ++ WW      G  G  P  YV+
Sbjct: 19  TAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVE 70

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           YD  A     +  +  DII   +   +G W G   G+ G FP  +VE   +  +S
Sbjct: 24  YDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS 78

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 61.7 bits (150), Expect = 6e-13
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ 149
            +    E V+A YD+    P ++  KK DIL +++   + WW  +
Sbjct: 16  DSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 60

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 62.0 bits (151), Expect = 7e-13
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVP 161
              +    K    YD+D  +  +L    ++++ V S    +  W   +    + G +P+ 
Sbjct: 11  LKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGE-RGNQKGKVPIT 69

Query: 162 YVQKYSEG 169
           Y++  + G
Sbjct: 70  YLELLNSG 77

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 204 LPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPF 256
           L   +  ++ RV   YD  A     L L   ++I V       +    GE   + G  P 
Sbjct: 11  LKESSNNRKARV--LYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPI 68

Query: 257 THVEFIPTNETS 268
           T++E + +  +S
Sbjct: 69  TYLELLNSGPSS 80

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 61.7 bits (150), Expect = 7e-13
 Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
              +    +      ++ F     + V+ K E  WW  +      G  P  Y+     
Sbjct: 9   TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVR-FGELEGWAPSHYLVLDEN 65

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 47.9 bits (114), Expect = 7e-08
 Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 211 KQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
                 +AY K     +    G  ++V +   +G W        G  P  ++      + 
Sbjct: 9   TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQP 68

Query: 268 SVETNGNG 275
                 +G
Sbjct: 69  DPSGKESG 76

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 61.5 bits (150), Expect = 8e-13
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +     + ++  + D+L  K+ DI+ +++KD  +  WW  + ++G  G  P  +V+    
Sbjct: 3   DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVKLLPP 61

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNETSVETN 272
           L ++ GDI+ +   +    G WEGELNG+ G FP   V+ +P  E     +
Sbjct: 19  LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEHHHHHH 69

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSE 168
             VIA   +  ++   L F + D++ ++     E  W       G  G  P   VQ  + 
Sbjct: 9   GYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGS-AGGRSGLFPADIVQPAAA 67

Query: 169 G 169
            
Sbjct: 68  P 68

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 50.9 bits (122), Expect = 7e-09
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGN 274
              + + L    GD+IK+        G   G   G++G FP   V+     + S      
Sbjct: 18  ITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPDFSFSKEQR 77

Query: 275 GDIHNST 281
                S+
Sbjct: 78  SGSGPSS 84

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 7   PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN- 64
             +   W+F  ++R++A+  LL+    +G+FL+R+S +  G++ L V++ ++    ++  
Sbjct: 70  SLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKH 129

Query: 65  -KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
            KI N +    Y     TF  L  L+  Y   
Sbjct: 130 YKIRNLDNGGFYISPRITFPGLHELVRHYTNA 161

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 53.5 bits (128), Expect = 5e-09
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGS 157
           ++P   P    +  VIA + ++ +   DL F+K + L ++ +  E WW AQ++ +G+ G 
Sbjct: 3   SNPPASPLQDNL--VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGF 59

Query: 158 IPVPYVQKY 166
           IP  +V K 
Sbjct: 60  IPFNFVAKA 68

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           +           K+++     D+L   K   +IV+ K  + WW     +G+VG  P  YV
Sbjct: 11  ERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS-YNGQVGWFPSNYV 69

Query: 164 QKYSE 168
            +  +
Sbjct: 70  TEEGD 74

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 50.9 bits (122), Expect = 8e-09
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           L L  G  + V +   +G W G  NG+ G FP  +V     +   
Sbjct: 34  LSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLG 78

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 60.8 bits (148), Expect = 1e-12
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVPYVQKYS 167
               A YD   +  D+L F + DIL ++ +   + E WW    + G  G  P   +Q  S
Sbjct: 8   LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCL-LHGRQGLAPANRLQILS 66

Query: 168 E 168
            
Sbjct: 67  G 67

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQ---WEGELNGKTGHFPFTHVEFIP 263
           YD        L    GDI+ + + ++      W+  L+G+ G  P   ++ + 
Sbjct: 14  YDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILS 66

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +     K  A   +     + L F K+DI+ V+ +  E+WW  + + G  G  P  YV+
Sbjct: 5   SSGVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGE-VHGGRGWFPKSYVK 62

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVET 271
           A     L     DII V +      W GE++G  G FP ++V+ IP +E+   +
Sbjct: 21  AKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYVKIIPGSESGPSS 73

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPY 162
             +     K  A Y        +L F    +   V    E  W     ++G+ G IP  Y
Sbjct: 4   GSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT-LNGKTGLIPENY 62

Query: 163 VQKYSE 168
           V+  S 
Sbjct: 63  VEFLSG 68

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 219 YDKTA-----LKLEIGDII-KVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           Y   A     L    G +   V  +   G  EG LNGKTG  P  +VEF+ 
Sbjct: 17  YACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLS 67

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 62.4 bits (151), Expect = 2e-12
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 3/136 (2%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQ 164
              T     A+YDF   D  +L  K+ DI+ +++K  ++ WW  + I G +G  P  YV+
Sbjct: 1   GPGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGE-IYGRIGWFPSNYVE 59

Query: 165 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTAL 224
           +        +        +   +   +T     T   V      +V +    +       
Sbjct: 60  EDYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEW 119

Query: 225 KLEIGD-IIKVTKTNI 239
             +       VT+ ++
Sbjct: 120 TYDDATKTFTVTEHSL 135

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 224 LKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTP 282
           L L+ GDIIK+  K    G W GE+ G+ G FP  +VE   +        G+G       
Sbjct: 22  LSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYLPETGGGSGSSMTYKL 81

Query: 283 KTETPT 288
                T
Sbjct: 82  ILNGKT 87

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 106 ATKTIEKVIAKYDFDGN-DPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYV 163
           ++    K    YDF      ++L   + +I+ V + +    W   +N  GE G +P  YV
Sbjct: 5   SSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYV 64

Query: 164 Q 164
           +
Sbjct: 65  E 65

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 39.2 bits (92), Expect = 9e-05
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 219 YDKTA------LKLEIGDIIKVTKTNI-NGQWEGEL-NGKTGHFPFTHVEFIPTNETS 268
           YD  A      L +  G+II VT  N+  G  EG+   G+ G  P  +VE +P +   
Sbjct: 16  YDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKD 73

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---WWTAQNISGEVGSIPVPYVQK 165
             A YD     PD+L F+K DI+ V+ +D +    WW    + G  G +P   ++ 
Sbjct: 6   AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCS-LHGRQGIVPGNRLKI 60

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 219 YDKTA-----LKLEIGDIIKVTK---TNINGQWEGELNGKTGHFPFTHVEFIP 263
           YD  A     L    GDI+ V +     ++G W   L+G+ G  P   ++ + 
Sbjct: 10  YDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV 62

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 59.6 bits (145), Expect = 3e-12
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ----NISGEVGSIPVPYVQ 164
           KV+A++ +  +  DDL F+K+  +IV S ++  W+  +    N     G  P  +V 
Sbjct: 9   KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 5/42 (11%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNG-----KTGHFPFTHVE 260
           L  E    I VT       + GE          G FP + V 
Sbjct: 24  LNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 59.6 bits (145), Expect = 3e-12
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYS 167
               A Y +   + D+L  ++ D + V+ + ++ W+   +  + + G+ P  YV   S
Sbjct: 8   TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVS 65

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP 263
           L+L  GD + V +   +G + G      K G FP  +V  + 
Sbjct: 24  LELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVS 65

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQ 164
           A   +    A YD+   D D++ F+  D ++ V   ++ W       +G  G +P  Y++
Sbjct: 2   AMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61

Query: 165 KYS 167
             +
Sbjct: 62  FVN 64

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFI 262
           YD +A     +    GD I   +   +G   G +   G+TG  P  ++EF+
Sbjct: 13  YDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI-PVPYVQ 164
           +      V A +D+     D+L F K+ I+  V K E  WW      G+     P  YV+
Sbjct: 2   SPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGD-YGGKKQLWFPSNYVE 60

Query: 165 KYSE 168
           +   
Sbjct: 61  EMVN 64

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGH-FPFTHVEFIPTNE 266
            A  +  L      II+  +    G W G+  GK    FP  +VE +   E
Sbjct: 16  KAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPE 66

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 58.7 bits (143), Expect = 6e-12
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            + A Y ++    D++     DI+ V+  D+   WT     G  G  P  Y +
Sbjct: 2   AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 219 YDKTA-----LKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVE 260
           Y   A     + ++ GDII V    + +G   GE +G  G FP ++ +
Sbjct: 7   YAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 59.8 bits (145), Expect = 7e-12
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 163
            +       A Y F+  + D++ F   DI+ V  K   E  W       G  G  P  YV
Sbjct: 1   GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS-FQGNFGWFPCNYV 59

Query: 164 QKYSE 168
           +K   
Sbjct: 60  EKMPS 64

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           +    GDII+V +  +   G   G   G  G FP  +VE +P++E  
Sbjct: 22  MSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE 68

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDG------NDPDDLPFKKNDILIVVSK-DEEHWWTAQNI 151
           +    +  +  +   +A+Y ++       N   +LP      L V    DE+ ++  + +
Sbjct: 6   SGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL 65

Query: 152 SGEVGSIPVPYVQKYSE 168
            G+ G +P  +V    +
Sbjct: 66  DGQRGLVPSNFVDFVQD 82

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 216 PNAYDKTALKLEIGDIIKVT-KTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETN 272
           PN   +  L L  G  + V    + +G +EGE L+G+ G  P   V+F+  NE+ + + 
Sbjct: 32  PNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESRLAST 90

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 23/91 (25%)

Query: 182 SSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRV----PNAYDKTALKLEIGDIIKVTKT 237
           S  HH       P                 +VR      N +D TAL +  GD+I V + 
Sbjct: 3   SHHHHHHSSGLVP-------------RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQ 49

Query: 238 NINGQWEGELNG------KTGHFPFTHVEFI 262
           + +G+W+G ++       + G+FP   VE +
Sbjct: 50  HPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 57.2 bits (138), Expect = 4e-11
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 95  HYLDTSPLIKPATKTIEKVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWT-----A 148
           H+  +S L+        KV A  DF   +DP  L  +  D++ V+ +  +  W      +
Sbjct: 6   HHHHSSGLVPRG---SLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHES 62

Query: 149 QNISGEVGSIPVPYVQKYSE 168
           Q  +  +G  P   V+  S+
Sbjct: 63  QRGTDRIGYFPPGIVEVVSK 82

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE 168
            +V A   +    D D++ F K D+ IV ++ E+ W    N  + E G I    V++ S 
Sbjct: 8   RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG 67

Query: 169 GMS 171
             S
Sbjct: 68  PSS 70

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 57.0 bits (138), Expect = 3e-11
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
            +V A   +    D D++ F K D+ IV ++ E+ W    N+   E G I    V++
Sbjct: 6   RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 62

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 56.8 bits (138), Expect = 3e-11
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTA--QNISGEVGSIPVPYVQ 164
           +    Y +   D D++     D + +V++D    WT    + +GE G +P  Y++
Sbjct: 3   ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 56.8 bits (138), Expect = 3e-11
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 168
           +   A + F     D+L  + +D L+V  + E++W+ A N+ +G  G  P  Y  + ++
Sbjct: 4   QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 62

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
           L+LE+ D + V     +  +E      G  G FP  +   + 
Sbjct: 20  LELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 61

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 57.6 bits (139), Expect = 4e-11
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 99  TSPLIKPATKTIEKVIAKYDFD--------GNDPDDLPFKKNDILIVVSKDEEHWWTAQN 150
           +              +A +D+D            ++LPFK+  I+ V    +   +    
Sbjct: 6   SGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGE 65

Query: 151 ISGEVGSIPVPYVQK 165
               +G IP   V +
Sbjct: 66  TCARLGLIPCNMVSE 80

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 224 LKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           L  + G IIKV    + +G + GE   + G  P   V  I  ++  
Sbjct: 42  LPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQADDEE 87

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 56.6 bits (137), Expect = 4e-11
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 123 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH 179
            P ++  KK DIL +++   + WW  + ++   G +P  YV+K   G     +  L+
Sbjct: 2   GPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSGTGKELVLALY 57

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 9/45 (20%), Positives = 22/45 (48%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           + ++ GDI+ +  +     W+ E+N + G  P  +V+ + +    
Sbjct: 6   VTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 50

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 56.5 bits (137), Expect = 5e-11
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
             V A +D+     D+L F K+ I+  V K +  WW       +    P  YV++
Sbjct: 4   SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE 58

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGH-FPFTHVEFIP 263
            A  +  L      II+  +    G W G+  GK    FP  +VE + 
Sbjct: 13  KAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW----TAQNISGEVGSIPVP 161
           +  + E       +  +  + L      +++++ K+   WW     A+    + G  P  
Sbjct: 3   SGSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPAS 62

Query: 162 YVQ 164
           +V+
Sbjct: 63  HVK 65

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGK-----TGHFPFTHVEFIPTNETSVETNGNG 275
           L L  G +I + K N +G W+GEL  +      G FP +HV+ +  +        +G
Sbjct: 24  LSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERASGPSSG 80

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 168
           +   A + F     D+L  + +D L+V  + E++W+ A N+ +G  G  P  Y  + ++
Sbjct: 7   QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 65

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
           L+LE+ D + V     +  +E      G  G FP  +   + 
Sbjct: 23  LELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 64

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 105 PATKTIEKVIAKYDFDGNDP-------DDLPFKKNDILIVVSK-DEEHWWTAQNISGEVG 156
            +  + + +IA  D+D  D          L  +  D+++V    D++ ++  + + G  G
Sbjct: 2   SSGSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGE-LGGHRG 60

Query: 157 SIPVPYVQKYSE 168
            +P   +   S 
Sbjct: 61  LVPAHLLDHMSL 72

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 50.5 bits (121), Expect = 9e-09
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 212 QVRVPNAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
                    K  L L  GD++ V    +  G + GEL G  G  P   ++ +  +
Sbjct: 19  GDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLH 73

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYS 167
            + +V     F     D++  ++ D+++V+ ++ + W   + +  GE G  P  + +  S
Sbjct: 16  DLPQVEITKAFFAKQADEVTLQQADVVLVLQQE-DGWLYGERLRDGETGWFPEDFARFIS 74

Query: 168 EGMS 171
              S
Sbjct: 75  GPSS 78

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 212 QVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
           QV +  A+       + L+  D++ V +   +G   GE   +G+TG FP     FI 
Sbjct: 19  QVEITKAFFAKQADEVTLQQADVVLVLQQE-DGWLYGERLRDGETGWFPEDFARFIS 74

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+   +T  EA+ +LL+   +G+FL R S +  G+  L V+ N  V+H    KI NT   
Sbjct: 6  WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHI---KIQNTGD- 61

Query: 73 TCYKI-GDKTFSDLPSLLAFYK 93
            Y + G + F+ L  L+ +Y 
Sbjct: 62 -YYDLYGGEKFATLAELVQYYM 82

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-- 70
           W+ G ++ +EA+ +L  +  +G+FLVR+S +  G++VL V+  +        K   T   
Sbjct: 112 WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 171

Query: 71  ---QQTCYKIG-DKTFSDLPSLLAFYKVHYL 97
              Q+  Y +G  + F  L  L+  YK + +
Sbjct: 172 IRCQELKYDVGGGERFDSLTDLVEHYKKNPM 202

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 53.7 bits (129), Expect = 4e-10
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
               + +     D+L       + V+    + WW     +G++G  P  YV +  +
Sbjct: 4   AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGS-YNGQIGWFPSNYVLEEVD 58

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           +   A     L L  G  + V +   +G W G  NG+ G FP  +V 
Sbjct: 8   FAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVP 161
             +       +A Y+F G+    L  +  D++ +       W+    I      G  P  
Sbjct: 53  GSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKS 111

Query: 162 YVQ 164
           ++ 
Sbjct: 112 FIH 114

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A* Length = 532

 Score = 58.7 bits (142), Expect = 5e-10
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           W+   ++  +A+ +L     +G+FL R S    G++ L V+  ++V+H    +I N+  
Sbjct: 3  RWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHI---RIQNSG- 58

Query: 72 QTCYKI-GDKTFSDLPSLLAFYK 93
             Y + G + F+ L  L+ +Y 
Sbjct: 59 -DFYDLYGGEKFATLTELVEYYT 80

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEH-WWTAQNI-SGEVGSIPVPYVQKYS 167
           +KV   +    GN+   L F + D+L ++  +E+  W   ++  +   G  P  Y +  S
Sbjct: 8   QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

Query: 168 E 168
            
Sbjct: 68  G 68

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 220 DKTALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHVEFIP 263
           +KT L    GD++ +      +G   GE       G FP ++ + + 
Sbjct: 21  NKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 53.1 bits (128), Expect = 7e-10
 Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDIL-IVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYS 167
           +KV   +    G++   L F + D++ +++ ++++ W   ++ +S   G  P  Y +   
Sbjct: 7   QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66

Query: 168 E 168
           E
Sbjct: 67  E 67

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 208 ARVKQVRVPNAYDKTA------LKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTH 258
           + +K+ +V   +  TA      L    GD+I +        W  GE   +   G FP ++
Sbjct: 2   SHMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSY 61

Query: 259 VEFIP 263
            + + 
Sbjct: 62  TKLLE 66

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens} Length = 595

 Score = 58.4 bits (141), Expect = 8e-10
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           W+   ++  +A+ +L     +G+FL R S    G++ L V+  ++V+H    +I N+  
Sbjct: 3  RWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHI---RIQNSG- 58

Query: 72 QTCYKI-GDKTFSDLPSLLAFYK 93
             Y + G + F+ L  L+ +Y 
Sbjct: 59 -DFYDLYGGEKFATLTELVEYYT 80

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 53.3 bits (128), Expect = 8e-10
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 180
              P ++  KK DIL +++   + WW  + ++   G +P  YV+K   G     +  L+ 
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSGTGKELVLALYD 60

Query: 181 DSSSHHVPQQQTTP 194
              S       + P
Sbjct: 61  YQESGDNAPSYSPP 74

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 11/65 (16%), Positives = 26/65 (40%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPK 283
           + ++ GDI+ +  +     W+ E+N + G  P  +V+ + +           D   S   
Sbjct: 8   VTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQESGDN 67

Query: 284 TETPT 288
             + +
Sbjct: 68  APSYS 72

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 111 EKVIAKYDFDGNDP-------DDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
            +++A YD+D  +         +L F   DI+ V  + +E  +    ++G+ G +P  ++
Sbjct: 8   RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFL 67

Query: 164 QKYS 167
           ++ S
Sbjct: 68  EEVS 71

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 212 QVRVPNAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIP 263
           +   PN   +  L    GDII V  + + +G + GELNG+ G  P   +E + 
Sbjct: 19  RESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVS 71

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 53.5 bits (128), Expect = 2e-09
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWW-------TAQNISGEVG 156
           +  I   +A  D+   D   L   +  ++ V SK       +W          +++  +G
Sbjct: 19  SHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLG 78

Query: 157 SIPVPYVQKYSE 168
             P   V++   
Sbjct: 79  YFPSSIVREDQT 90

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 165
           A YD++G + D+L FK  D L  +   DE+ W   +  +G+VG  P  YV+ 
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEA 484

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +  ++    A +D    D  +L FK  D++ V+      WW  + ++   G  P  +V+
Sbjct: 25  ISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGR-VADGEGWFPASFVR 83

Query: 165 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKT 198
                            +S       +    +  
Sbjct: 84  LRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQ 117

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 12/71 (16%), Positives = 22/71 (30%)

Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDI 277
             D   L  + GD+I+V        W G +    G FP + V      +   + +     
Sbjct: 41  TMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAG 100

Query: 278 HNSTPKTETPT 288
           ++         
Sbjct: 101 NSGAEDGGAEA 111

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 50.4 bits (121), Expect = 7e-09
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 105 PATKTIEKVIAKYDFD-GNDPDDLPFKKNDILIV-VSKDEEHWWTAQNI-SGEVGSIPVP 161
           P      +V A +    G++   L FK+ D++ + V +  + W   ++  +   G  P  
Sbjct: 2   PLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFS 61

Query: 162 YVQK 165
           Y + 
Sbjct: 62  YTRV 65

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 211 KQVRVPNAYDKTA------LKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHVEF 261
            ++RV   +   A      L  + GD+I +        W  GE       G FPF++   
Sbjct: 6   GRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65

Query: 262 I 262
           +
Sbjct: 66  L 66

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 98  DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH----WWTAQNI-S 152
            +S          E +   Y +   + D+L     D + +   ++      W    ++ +
Sbjct: 4   GSSGSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTT 63

Query: 153 GEVGSIPVPYVQKYSE 168
           G  G +P  Y+ K  E
Sbjct: 64  GCSGLLPENYITKADE 79

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 9/80 (11%)

Query: 205 PAFARVKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQ----WEG--ELNGKTGHFP 255
             FA  + ++V   Y       L+L  GD I ++             G     G +G  P
Sbjct: 11  IRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLP 70

Query: 256 FTHVEFIPTNETSVETNGNG 275
             ++       T +    +G
Sbjct: 71  ENYITKADECSTWIFHGSSG 90

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 108 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWT---------AQNISG 153
             + KV A++D+   D D+L  K  D+++V+        +E W            + +  
Sbjct: 42  GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEK 101

Query: 154 EVGSIPVPYVQK 165
             G  P  + ++
Sbjct: 102 CRGVFPENFTER 113

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 48.5 bits (115), Expect = 5e-08
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNI-SGEVGSIPVPY 162
           P  +  ++        G     L     DI+ +   + E +WW  +N  + EVG  P   
Sbjct: 13  PKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR 72

Query: 163 VQKY 166
           V  Y
Sbjct: 73  VHPY 76

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHV 259
           K+  F     +  P       L+L  GDI+++TK      W EG      + G FP   V
Sbjct: 14  KMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 73

Query: 260 E 260
            
Sbjct: 74  H 74

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMS 171
           +VI  YD+   + D+L F K  I+ V++K++  WW  + +SG+VG  P  YV+  ++   
Sbjct: 4   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-VSGQVGLFPSNYVKLTTDMDP 62

Query: 172 ILS 174
              
Sbjct: 63  SQQ 65

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 49.4 bits (117), Expect = 7e-08
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 11  NSWYFGMMTRQEAQAILLSE-----KDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIIN 64
           NS +       E + +  +        +G + +R+S+T  G  ++   E +NKV +Y I 
Sbjct: 17  NSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRI- 75

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
                +    Y  G+  F  + S++  Y  H L + 
Sbjct: 76  ---FEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSH 108

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens} Length = 118

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN----NKVSHYIINKITN 68
             F  ++R EAQ +L    + G  L+R S        +  ++     + V HY + +   
Sbjct: 23  SCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGP 82

Query: 69  TEQQTCYKIGDK---TFSDLPSLLAFYKVH 95
                 Y I  +   + + L +++ ++  H
Sbjct: 83  K-----YVIDVEQPFSCTSLDAVVNYFVSH 107

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--GEVGSIPVPYVQ 164
                  +A Y+F G+    L  +  D++ +       W+    I      G  P  ++ 
Sbjct: 14  ADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIH 72

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 16/81 (19%)

Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHW 145
           PL   A     +  A Y F    P+DL     D+L+V                      W
Sbjct: 2   PLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGW 61

Query: 146 WTAQN-ISGEVGSIPVPYVQK 165
               N  + + G  P  YV+ 
Sbjct: 62  MPGLNERTRQRGDFPGTYVEF 82

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 45.3 bits (107), Expect = 6e-07
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 112 KVIAKYDFD----GNDPDDLPFKKNDILIVVSKDEEH-WWTAQNI-SGEVGSIPVPYVQK 165
           +V  +Y       G     L     DI+ +   + EH WW  +N  + EVG  P   V  
Sbjct: 8   EVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67

Query: 166 Y 166
           Y
Sbjct: 68  Y 68

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHV 259
           K+  F     +  P       L+L  GDI+++TK    +  WEG      + G FP   V
Sbjct: 6   KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65

Query: 260 E 260
            
Sbjct: 66  H 66

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 115 AKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNISGE-----VGSIPVPYVQ 164
           A +D+D             F+  D+L V+   +E WW A+ +  +     +G IP     
Sbjct: 6   ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65

Query: 165 KYSEGMSILSLRNLHLDSSSHH 186
           +  E   + +        S   
Sbjct: 66  ERREWSRLKAKDWGSSSGSQGR 87

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A Length = 96

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPV 160
           +    + I    A  D  G   ++L FK+ + + ++      E  W  +   G  G I  
Sbjct: 21  LTGPIQVIHLAKACCDVKG-GKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKT 79

Query: 161 PYVQ 164
             V+
Sbjct: 80  TAVE 83

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGEVGSIPVPYVQKYSE 168
            A+ +F+     D+   + D++ V+ K +    ++ W   N     G +   +++ Y+ 
Sbjct: 21  QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN-GVTKGFVYSSFLKPYNP 78

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 115 AKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQK 165
               +     DD+P       F+  D L V  K    WW  + +    E+G IP P   +
Sbjct: 43  TNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLE 102

Query: 166 YSEGMSILSLRNLHLDSSSHHVPQQQTT 193
                     +   L S    +P  + T
Sbjct: 103 NMRLQHEQRAKEFKLHSKEKRMPFFKKT 130

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 18/108 (16%)

Query: 115 AKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPYVQ 164
           A +D+D N  D LP     FK  DIL V +  ++ WW A+ +       ++G +P     
Sbjct: 10  ALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRW 69

Query: 165 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVR--------KTHLEVKL 204
           +        S+++     S   V +      R        K  +   L
Sbjct: 70  ERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGPLKDRINDDL 117

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 14 YFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          + GM++R+ A  +L      G++L+R+S    G Y L ++  ++  ++
Sbjct: 54 FHGMISREAADQLL--IVAEGSYLIRESQRQPGTYTLALRFGSQTRNF 99

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473

 Score = 43.4 bits (101), Expect = 5e-05
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 12/110 (10%)

Query: 7   PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLC---VKENNKVSHYII 63
              +    +G M RQE     L  +D G F++R S    G + +    V+   ++ HY++
Sbjct: 347 TLWQEGIIYGYMGRQEVND-ALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLV 405

Query: 64  NKITNTEQQTCYKIGDKTFSD-LPSLLAFYKVHYLDTSPLIKPATKTIEK 112
                   +       KTF D L     F  +          P    + K
Sbjct: 406 QPNDTAAAK-------KTFPDFLSEHSQFVNLLQWTKDTNGAPRFLKLHK 448

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 14/99 (14%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKD---------EEHWWTAQNI-----SGEVGSIPV 160
             ++ + + P  L F + D+  V+                W A  +       E G IP 
Sbjct: 9   THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPN 68

Query: 161 PYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTH 199
               +    +            SS     +      +  
Sbjct: 69  QSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGL 107

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 117 YDFDGNDPDDLPFKKNDILIVVS---KDEEHWWTA-----QNISGEVGSIPVPYVQKYSE 168
           ++++   P  L F K ++  VV      +   W A      +   E G IP     +   
Sbjct: 113 FEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLA 172

Query: 169 GM 170
            +
Sbjct: 173 SV 174

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 14/72 (19%)

Query: 108 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--------------EEHWWTAQNISG 153
             + KV A++D+   D D+L  K  D+++V+                 E  W   + +  
Sbjct: 140 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEK 199

Query: 154 EVGSIPVPYVQK 165
             G  P  + ++
Sbjct: 200 CRGVFPENFTER 211

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae} Length = 178

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK-ENNKVSHYIINKITNTEQ 71
            F      E++  L        FL+R  +   G  VL +K  ++   H  I      E 
Sbjct: 15 PLFKNFNVTESENYL--RSSTDDFLIRKGSR-HGYCVLVIKFASDVFVHMKI-----EEH 66

Query: 72 QTCYKIGDKTFSDLPSLLAFY 92
             Y   +K F D+  +++ Y
Sbjct: 67 SEHYTCSNKHFEDIDEVISVY 87

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 8/75 (10%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVS---KDEEHWWTAQ-----NISGEV 155
           +        +   ++++   P  L F K ++  VV      +   W A      +   E 
Sbjct: 92  ESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVER 151

Query: 156 GSIPVPYVQKYSEGM 170
           G IP     +    +
Sbjct: 152 GIIPNKNRAEQLASV 166

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Length = 283

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
             ++A  D+      ++   K D   +V   +   W   + SG   ++P
Sbjct: 199 LPLLAVCDYKQ---VEVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVP 244

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	100.0
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	100.0
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	100.0
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	100.0
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	100.0
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.97
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	99.94
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	99.93
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	99.93
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.93
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	99.93
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	99.92
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	99.92
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	99.92
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	99.92
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.92
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	99.92
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	99.92
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	99.92
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	99.92
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	99.92
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	99.92
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	99.92
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	99.91
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	99.91
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	99.91
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.91
2dly_A	121	FYN-related kinase; BRK family kinase, structural	99.91
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	99.91
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	99.91
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	99.91
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	99.91
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	99.91
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	99.91
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	99.91
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	99.91
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	99.91
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	99.91
2lnw_A	122	VAV-2, guanine nucleotide exchange factor VAV2; si	99.91
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	99.91
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	99.91
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	99.91
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	99.9
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	99.9
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	99.9
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	99.9
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	99.9
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	99.9
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.9
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	99.89
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	99.89
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	99.88
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	99.87
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.87
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.87
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	99.86
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	99.86
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	99.86
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	99.86
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	99.86
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	99.86
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	99.85
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	99.85
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	99.84
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	99.83
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	99.82
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.81
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.81
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.8
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.77
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	99.74
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	99.74
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	99.73
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	99.73
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.72
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	99.72
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	99.67
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.65
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	99.65
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.64
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.64
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.62
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.62
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.62
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.61
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.59
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.59
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.58
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	99.58
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.58
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.57
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.57
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.57
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.54
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.54
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.53
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.52
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.52
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.52
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.52
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.52
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.51
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.51
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.51
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.51
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.51
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.51
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.51
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.51
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.51
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.51
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.5
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.5
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.5
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.5
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.5
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.5
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.49
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.49
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.49
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.49
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.49
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.49
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.49
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.49
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.49
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.48
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.48
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.48
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.48
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.48
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.48
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.47
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.47
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.47
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.47
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.47
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.47
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.47
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.47
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.47
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.47
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.47
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.47
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.47
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.47
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.47
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.47
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.46
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.46
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.46
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.46
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.46
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.46
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.46
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.45
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.45
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.45
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.45
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.45
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.45
3u23_A	65	CD2-associated protein; structural genomics, struc	99.45
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.45
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.45
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.45
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.45
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.45
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.45
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.45
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.45
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.44
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.44
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.44
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.44
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.44
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.44
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.44
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.44
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.44
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.43
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.43
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.43
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.43
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.43
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.43
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.43
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.43
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.43
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.42
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.42
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.42
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.42
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.42
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.42
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.42
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.42
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.42
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.42
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.42
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.42
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.42
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.42
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.41
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.41
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.41
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.41
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.41
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.41
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.41
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.41
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.41
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.41
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.4
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.4
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.4
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.4
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.4
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.4
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.4
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.4
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.4
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.4
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.39
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.39
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.39
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.39
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.39
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.39
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.38
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.38
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.38
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.38
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.38
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.37
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.37
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.37
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.37
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.37
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.37
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.37
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.36
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.36
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.36
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.36
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.36
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.36
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.36
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.36
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.36
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.36
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.36
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.35
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.35
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.35
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.35
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.35
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.35
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.35
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.35
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.35
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.35
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.35
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.35
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.35
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.35
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.35
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.35
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.34
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.34
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.34
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.34
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.34
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.34
3u23_A	65	CD2-associated protein; structural genomics, struc	99.34
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.34
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.34
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.34
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.34
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.34
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.34
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.34
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.34
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.34
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.33
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.33
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.33
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.33
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.33
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.33
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.33
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.33
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.33
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.33
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.33
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.32
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.32
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.32
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.32
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.32
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.32
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.32
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.32
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.32
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.32
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.31
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.31
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.31
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.31
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.31
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.31
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.31
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.31
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.31
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.31
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.31
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.3
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.3
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.3
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.3
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.3
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.3
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.3
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.3
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.3
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.3
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.3
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.3
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.3
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.3
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.3
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.3
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.3
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.3
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.3
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.29
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.29
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.29
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.29
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.29
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.29
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.29
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.29
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.29
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.28
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.28
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.28
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.28
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.28
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.28
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.28
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.28
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.28
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.28
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.28
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.28
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.28
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.28
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.27
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.27
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.27
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.27
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.27
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.27
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.27
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.27
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.27
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.26
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	99.26
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.26
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.26
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.26
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.26
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.26
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.26
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.25
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.25
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.25
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.25
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.25
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.24
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.24
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.24
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.24
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.24
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.24
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.24
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.24
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.24
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.24
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.24
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.24
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.23
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.23
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.23
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.23
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.23
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.23
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.22
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.22
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.22
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.22
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.21
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.21
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.2
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.2
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.2
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.2
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.19
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.19
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.19
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.19
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.19
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.19
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.18
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.17
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.15
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.15
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.13
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.13
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.13
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.13
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.12
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.12
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.12
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.12
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.11
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.11
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.1
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.09
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.08
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.08
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.07
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.06
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.06
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.06
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.05
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.03
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.02
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.98
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.98
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.91
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.91
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	98.89
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.89
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.88
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.88
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.82
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.29
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	98.8
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.8
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.78
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.78
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.7
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.7
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.66
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.65
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.64
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.64
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.54
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	98.5
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.44
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	98.44
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.41
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.38
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.37
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.35
1uur_A	473	Stata protein, STAT protein; transcription activat	98.34
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.32
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	98.26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.23
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.21
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.21
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.08
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.9
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	97.89
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.84
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.81
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.74
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.71
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.71
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.7
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.65
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.63
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	97.57
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.56
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.54
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	97.52
1yvl_A	683	Signal transducer and activator of transcription 1	97.45
1y1u_A	585	Signal transducer and activator of transcription;	97.41
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	97.34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	97.25
1bf5_A	575	Signal transducer and activator of transcription 1	96.84
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	96.73
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	96.72
3bux_B	329	E3 ubiquitin-protein ligase CBL; TKB, signal trans	96.71
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	96.43
3op0_A	323	Signal transduction protein CBL-C; structural geno	96.29
3psi_A	1219	Transcription elongation factor SPT6; nucleus; 3.3	96.26

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=100.00  E-value=4e-53  Score=375.37  Aligned_cols=266  Identities=50%  Similarity=0.891  Sum_probs=211.7

Q ss_pred             CCCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecC------------
Q psy5076           1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN------------   68 (288)
Q Consensus         1 ~~~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~------------   68 (288)
                      |+.++++++.++||||.|+|++||+||+.. .+|+||||+|++..|.|+|||+.+++|+||+|.+...            
T Consensus         1 ~~~~~~~~~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~   79 (304)
T 2eyz_A            1 MAGNFDSEERSSWYWGRLSRQEAVALLQGQ-RHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPP   79 (304)
T ss_dssp             CCSSCCCSSSSSSCCCCCCSSHHHHTTTTC-CSSCEECCSCCSSSSCCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCS
T ss_pred             CCCccccccCCCCccCCCCHHHHHHHhcCC-CCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEeeccccccccccccccc
Confidence            789999999999999999999999999754 5599999999988999999999999999999997311            


Q ss_pred             --CCcceEEeeCCcccCChhhhhhhheecccCCCcccccccce------------eeEEeeeccCCCCCCCCCCCCCCCE
Q psy5076          69 --TEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT------------IEKVIAKYDFDGNDPDDLPFKKNDI  134 (288)
Q Consensus        69 --~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~l~~p~~~~------------~~~~~a~~~~~~~~~~eLs~~~g~~  134 (288)
                        ...+. |.+++..|.||.+||+||+.+++.++.|+.||+++            ...++|+|+|.++..++|+|++||+
T Consensus        80 ~~~~~~~-~~~~~~~F~sl~~LV~~y~~~~l~~~~L~~P~~~~~~~~g~~~~~~~~~~~~alydy~~~~~~eLsf~~Gd~  158 (304)
T 2eyz_A           80 PGVSPSR-LRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDI  158 (304)
T ss_dssp             SSSSCCC-CCBTTBCCSCHHHHHTTTTTSCCSSSSSCCBCCSCSCCSCCCCCCCCCCEEEECSCCCCSCSSSCCCCTTCE
T ss_pred             cccCCCe-EEeCCcEECCHHHHHHHhhhCccccceeccccccccccccccCCcccceeEEEEeeecCCCCCcCcccCCCE
Confidence              01124 88888899999999999999998888899998763            2368999999999999999999999


Q ss_pred             EEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCccc-ccccCCCC-----CCCCCCCCCCCcc---ccccccCCCCC
Q psy5076         135 LIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSIL-SLRNLHLD-----SSSHHVPQQQTTP---VRKTHLEVKLP  205 (288)
Q Consensus       135 i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~  205 (288)
                      |.|+.+.+++||.+++.+|+.||||++||+.+....... .+....+.     +.+.+.|+.....   ...+... ..+
T Consensus       159 i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~p~~~~~~p~~~-~~~  237 (304)
T 2eyz_A          159 LRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQ-NGP  237 (304)
T ss_dssp             EEEEECCSSSEEEEECTTSCEEEEESTTEEECCCSTTSCCCCCCCSSCCSCCCSCSCCCSBTTBCSSSSCSSSCCS-SCC
T ss_pred             EEEEEecCCCcEEEEeCCCceeccchhccccccCCCcccccccCCCcCCCCCCCCCCCCcccccccccccccCCCC-CCC
Confidence            999999889999999788999999999999887653221 00000110     0011111111000   0011111 124


Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCcc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSV  269 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~  269 (288)
                      .+++|+|+|.+.+..++||+|.+||+|.|+++.++|||.|+++|+.||||++||+.+....+..
T Consensus       238 ~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~~~  301 (304)
T 2eyz_A          238 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPEE  301 (304)
T ss_dssp             CCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCCCSSCCTTC
T ss_pred             EEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEECCCCCccc
Confidence            5789999997667888999999999999999999999999999999999999999998776543

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=100.00  E-value=5.2e-51  Score=362.69  Aligned_cols=261  Identities=34%  Similarity=0.591  Sum_probs=144.5

Q ss_pred             CCCCCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCe---EEEEEEEe-ecCCCc---ce
Q psy5076           2 TGTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNK---VSHYIINK-ITNTEQ---QT   73 (288)
Q Consensus         2 ~~~~~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~---v~h~~I~~-~~~~~~---~~   73 (288)
                      +.++++++.++||||.|+|++||+||+. .+.+|+||||+| +.+|.|+|||+.+++   |+||+|.+ ....+.   +.
T Consensus        32 ~~~~~~l~~~~Wyhg~i~R~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~g~  110 (308)
T 3qwy_A           32 TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAG  110 (308)
T ss_dssp             --CCCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTTTCCCC
T ss_pred             ccccCcccccccccCCCCHHHHHHHHhccCCCCceEEEEcc-CCCCCEEEEEEeCCCCCceEEEEEeeccCCCcCcccce
Confidence            3578899999999999999999999987 666799999999 889999999999999   99999987 543111   24


Q ss_pred             EEeeCCcccCChhhhhhhheecccCCCcccccccce-eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC
Q psy5076          74 CYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT-IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS  152 (288)
Q Consensus        74 ~~~~~~~~F~sl~~LV~~y~~~~l~~~~l~~p~~~~-~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~  152 (288)
                       |++++..|.++.+||+||+.+++..+.|..|++++ ...++|+|+|.++..++|+|++||+|.|+++.+++||.+++.+
T Consensus       111 -~~~~~~~F~Sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~  189 (308)
T 3qwy_A          111 -VKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNAL  189 (308)
T ss_dssp             -EEETTEEESSHHHHHHHHHHSCSSSCCCCEECCCCCCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTT
T ss_pred             -EEEeCeeeCCHHHHHHHHhhcccccchhccccccccceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCC
Confidence             99999999999999999999988878899999873 5689999999999999999999999999999989999999668


Q ss_pred             CcEEEEeCCCeEecc---cCCcc-cccccCCCCCCCCCCCC-CCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeec
Q psy5076         153 GEVGSIPVPYVQKYS---EGMSI-LSLRNLHLDSSSHHVPQ-QQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLE  227 (288)
Q Consensus       153 g~~G~vP~~~v~~~~---~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~  227 (288)
                      |+.||||++||+...   ..... .+...+.......+.|. .+......+......+.+++|+|+|.+.+.+++||+|.
T Consensus       190 g~~G~~P~~yv~~~~~~~~~~~~~~~~~ss~~ss~s~p~p~s~ps~~sp~p~~~~~~~~~a~alyd~~~~~~~~~ELs~~  269 (308)
T 3qwy_A          190 GTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVK  269 (308)
T ss_dssp             SCEEEEEGGGEEEC------------------------------------------------------------------
T ss_pred             CCeeEecccccccccccccCccccccccCCCCCccccccccccccccCcccccccccccccccccccccccCCcccceeC
Confidence            999999999999443   22110 00000000000000111 11111112222322356899999998777777899999


Q ss_pred             CCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         228 IGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       228 ~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      +||+|.|+++.++|||.|+++|+.||||++||+.++.
T Consensus       270 ~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          270 KGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAV  306 (308)
T ss_dssp             -------------------------------------
T ss_pred             CCCEEEEEEEcCCCcEEEEECCeeEEechHHeEEecC
Confidence            9999999999999999999999999999999999864

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=100.00  E-value=4.5e-53  Score=374.87  Aligned_cols=262  Identities=50%  Similarity=0.882  Sum_probs=209.5

Q ss_pred             CCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcc
Q psy5076           2 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKT   81 (288)
Q Consensus         2 ~~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~   81 (288)
                      +..+++|+.++||||.|+|++||+||+.. .+|+||||.|++..|.|+|||+.+++|+||+|.+...+   . |.+++..
T Consensus         3 ~~~~d~~~~~~Wyhg~isR~~Ae~lL~~~-~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g---~-~~~~~~~   77 (303)
T 2lqn_A            3 SARFDSSDRSAWYMGPVSRQEAQTRLQGQ-RHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR---R-FKIGDQE   77 (303)
Confidence            46789999999999999999999999876 55999999999889999999999999999999986444   4 8888899


Q ss_pred             cCChhhhhhhheecccCCCcccccccce-------------------eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC
Q psy5076          82 FSDLPSLLAFYKVHYLDTSPLIKPATKT-------------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE  142 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~~~~l~~p~~~~-------------------~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~  142 (288)
                      |.||.+||+||+++++.++.|+.||+++                   ...++|+|+|.++..+||+|++||+|.|+++.+
T Consensus        78 F~sl~~Lv~~y~~~~~~~~~L~~P~~r~~~~~~~~~~~p~~~~~~~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~  157 (303)
T 2lqn_A           78 FDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPE  157 (303)
Confidence            9999999999999998888899999872                   245889999999999999999999999999988


Q ss_pred             CCeEEEEeCCCcEEEEeCCCeEecccCCcccccccC------CCCCCC--------CCCCCCC---CccccccccCCCCC
Q psy5076         143 EHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNL------HLDSSS--------HHVPQQQ---TTPVRKTHLEVKLP  205 (288)
Q Consensus       143 ~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~~~------~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~  205 (288)
                      ++||.+++.+|+.||||++||+.+.........++.      .+.+..        .+.|...   .............+
T Consensus       158 ~~Ww~~~~~~g~~G~~P~~yv~~~~~~~~~~~~~s~~~~~~~~p~~s~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~  237 (303)
T 2lqn_A          158 EQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGP  237 (303)
Confidence            999999977899999999999988765321110000      000000        0000000   00000000111125


Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      .+++|+|+|.+++.+++||+|.+||+|.|+++.++|||.|+++|+.||||++||+.+....+.
T Consensus       238 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~~  300 (303)
T 2lqn_A          238 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPD  300 (303)
Confidence            679999999776777889999999999999999999999999999999999999999776654

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=100.00  E-value=8.6e-38  Score=255.48  Aligned_cols=162  Identities=37%  Similarity=0.713  Sum_probs=143.8

Q ss_pred             CCCCCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCe---EEEEEEEe-ecCCCc---ce
Q psy5076           2 TGTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNK---VSHYIINK-ITNTEQ---QT   73 (288)
Q Consensus         2 ~~~~~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~---v~h~~I~~-~~~~~~---~~   73 (288)
                      +.++++++.++||||.|+|++||++|+. .+.+|+||||+| +.+|.|+|||+.++.   |+||+|.+ ....+.   +.
T Consensus         3 ~~~~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~~   81 (174)
T 3qwx_X            3 TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAG   81 (174)
T ss_dssp             -CCSCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCCC
T ss_pred             ccccCccccCCCccCCCCHHHHHHHHhccCCCCCeEEEEec-CCCCCEEEEEEECCCCCceEEEEEEeccCCCCCcccce
Confidence            3478999999999999999999999987 566799999999 789999999999998   99999987 322111   24


Q ss_pred             EEeeCCcccCChhhhhhhheecccCCCcccccccc-eeeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC
Q psy5076          74 CYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS  152 (288)
Q Consensus        74 ~~~~~~~~F~sl~~LV~~y~~~~l~~~~l~~p~~~-~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~  152 (288)
                       |++++..|+||.+||+||+.+++..+.|..||++ ....++|+|+|.++..+||+|++||+|.|+++.+++||.|++.+
T Consensus        82 -~~~~~~~F~sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~  160 (174)
T 3qwx_X           82 -VKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNAL  160 (174)
T ss_dssp             -EEETTEEESSHHHHHHHTTSSCSSSCCCCEECCCCCSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTT
T ss_pred             -EEECCeecCcHHHHhhhhhcCcccccccccccccccccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECC
Confidence             8888889999999999999998877889999987 46789999999999999999999999999999899999999778


Q ss_pred             CcEEEEeCCCeEe
Q psy5076         153 GEVGSIPVPYVQK  165 (288)
Q Consensus       153 g~~G~vP~~~v~~  165 (288)
                      |+.|+||++||+.
T Consensus       161 g~~G~~P~nyv~~  173 (174)
T 3qwx_X          161 GTTGLVPANYVQI  173 (174)
T ss_dssp             CCEEEEEGGGEEE
T ss_pred             CCEEEEChHHEEe
Confidence            9999999999974

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=100.00  E-value=2.4e-38  Score=269.72  Aligned_cols=168  Identities=53%  Similarity=0.969  Sum_probs=149.0

Q ss_pred             CCCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCc---------
Q psy5076           1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ---------   71 (288)
Q Consensus         1 ~~~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~---------   71 (288)
                      |+.+|+.++.++||||.|+|++||+||+.. .+|+||||+|++..|.|+|||+.+++|+||+|.+...+..         
T Consensus         3 i~~~~~~l~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~   81 (230)
T 2dvj_A            3 MAGNFDSEERSSWYWGRLSRQEAVALLQGQ-RHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPP   81 (230)
T ss_dssp             CCSCCCSSSSSSSCCSSCCTTHHHHHHTTS-SSSCBEEECCSSCTTSCEEECCCSSSCCCEECBCCCSCCSSSSSSSSTT
T ss_pred             cCcccccccCCCcccCCCCHHHHHHHhcCC-CCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCCccccccccccc
Confidence            567899999999999999999999999754 4599999999988999999999999999999987653100         


Q ss_pred             -----ceEEeeCCcccCChhhhhhhheecccCCCcccccccce------------eeEEeeeccCCCCCCCCCCCCCCCE
Q psy5076          72 -----QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT------------IEKVIAKYDFDGNDPDDLPFKKNDI  134 (288)
Q Consensus        72 -----~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~l~~p~~~~------------~~~~~a~~~~~~~~~~eLs~~~g~~  134 (288)
                           +. |.+++..|.||.+||+||+.+++.++.|+.||++.            ...++|+|+|.+...+||+|++||+
T Consensus        82 ~g~~~~~-~~~~~~~F~sl~~LV~~y~~~~l~~~~L~~Pv~~~~~~s~~~L~~~~~~~~~al~dy~~~~~~eLsf~~Gd~  160 (230)
T 2dvj_A           82 PGVSPSR-LRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDI  160 (230)
T ss_dssp             TSCCCCC-EESSSCEESSHHHHHTTSTTTCSSSSCCCCBCCSCCCCCCCCCSCCCCCCCBCCSCCCCSSSSSCCCCSSCB
T ss_pred             ccccceE-EEeCCceeCCHHHHHHHHhhCccccccccccccccccccccccCcccceeEEEeeeecCCCCCCccCcCCCE
Confidence                 24 88888999999999999999999888899999863            2358899999999999999999999


Q ss_pred             EEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCC
Q psy5076         135 LIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM  170 (288)
Q Consensus       135 i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~  170 (288)
                      |.|+++.+++||.|++.+|+.||||++||+.+....
T Consensus       161 i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~  196 (230)
T 2dvj_A          161 LRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS  196 (230)
T ss_dssp             CCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSSC
T ss_pred             EEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCCC
Confidence            999999999999999788999999999999887653

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.97  E-value=1.9e-30  Score=219.34  Aligned_cols=160  Identities=25%  Similarity=0.532  Sum_probs=137.3

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccC
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFS   83 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~   83 (288)
                      ++..+..++||||.|+|++||.+|.....+|+||||.|.+.+|.|+||++.++.|+||+|.+...+   . |++....|.
T Consensus        51 ~yv~~~~~~w~~g~isr~~ae~lL~~~~~~G~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g---~-~~~~~~~f~  126 (217)
T 1gri_A           51 NYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG---K-YFLWVVKFN  126 (217)
T ss_dssp             GGEECCCCSSBCTTCCHHHHHHHHHTCSSTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSS---C-EESSSCEES
T ss_pred             cccccccchhhcccCCHHHHHHHHhccCCCceEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCC---C-EEEeeeEcC
Confidence            444566789999999999999999766677999999999999999999999999999999987654   4 888888999


Q ss_pred             ChhhhhhhheecccCCC---cccc--cccceeeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEE
Q psy5076          84 DLPSLLAFYKVHYLDTS---PLIK--PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI  158 (288)
Q Consensus        84 sl~~LV~~y~~~~l~~~---~l~~--p~~~~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~v  158 (288)
                      |+.+||+||+.+++...   .+..  |.+.....++|+++|.++..++|+|++||+|.|+.+.+++||.|+ .+|+.|+|
T Consensus       127 sl~eLv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~  205 (217)
T 1gri_A          127 SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMF  205 (217)
T ss_dssp             SHHHHHHHHHHSCSSSSTTCCCCBCCCCCCCCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEE-CSSCEEEE
T ss_pred             CHHHHHHhhhccccccccceeecccccCCCCceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEE-ECCeEEEE
Confidence            99999999999887621   1221  222335679999999999999999999999999999889999999 68999999


Q ss_pred             eCCCeEeccc
Q psy5076         159 PVPYVQKYSE  168 (288)
Q Consensus       159 P~~~v~~~~~  168 (288)
                      |++||+.+..
T Consensus       206 P~~yv~~~~~  215 (217)
T 1gri_A          206 PRNYVTPVNR  215 (217)
T ss_dssp             EGGGEEEECC
T ss_pred             eHHHeEECCC
Confidence            9999998764

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=175.12  Aligned_cols=102  Identities=56%  Similarity=1.003  Sum_probs=92.3

Q ss_pred             CCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcc
Q psy5076           2 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKT   81 (288)
Q Consensus         2 ~~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~   81 (288)
                      +.++++++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|.....+   . |.+++..
T Consensus        10 p~n~v~~~~~~Wyhg~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~   84 (111)
T 2eo3_A           10 SARFDSSDRSAWYMGPVSRQEAQTRLQGQ-RHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR---R-FKIGDQE   84 (111)
T ss_dssp             SCCCCTTCHHHHEEESCCHHHHHHHHSSC-CTTCEEEEECSSSSSCEEEEEEETTEEEEEEEEEETTT---E-EEETTCC
T ss_pred             cccccccCCCCcccCCCCHHHHHHHhcCC-CCceEEEEeecCCCCCEEEEEEeCCeEEEEEEEEcCCC---C-EEECCcc
Confidence            45788999999999999999999999754 55999999999888999999999999999999986544   4 8898899


Q ss_pred             cCChhhhhhhheecccCCCcccccccc
Q psy5076          82 FSDLPSLLAFYKVHYLDTSPLIKPATK  108 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~~~~l~~p~~~  108 (288)
                      |+||.+||+||+.+++.++.|+.||++
T Consensus        85 F~sl~~LV~~y~~~~l~~~~L~~Pv~r  111 (111)
T 2eo3_A           85 FDHLPALLEFYKIHYLDTTTLIEPAPR  111 (111)
T ss_dssp             BSSHHHHHHHHTTSCSSSSCCCCBCCC
T ss_pred             cCCHHHHHHHHhhCCCCCccCCCcCcC
Confidence            999999999999999988899999974

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A

Probab=99.93  E-value=5e-26  Score=168.09  Aligned_cols=96  Identities=29%  Similarity=0.490  Sum_probs=85.3

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCCh
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL   85 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl   85 (288)
                      +++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|...++.     |++. +..|+||
T Consensus         1 ~L~~~~Wyhg~isr~~Ae~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl   74 (98)
T 3us4_A            1 GLSLMPWFHGKISGQEAVQQLQPP-EDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGH-----LTIDEAVFFCNL   74 (98)
T ss_dssp             -CTTCTTBCCSCCHHHHHHHTCSC-CTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEETTE-----EESSSSSEESSH
T ss_pred             CCccCcccCCCCCHHHHHHHccCC-CCcEEEEEeCCCCCCcEEEEEEECCceEEEEEEEeCCE-----EEECCCCccCCH
Confidence            367889999999999999999865 45999999999889999999999999999999986543     8886 5799999


Q ss_pred             hhhhhhheecccC-CCcccccccc
Q psy5076          86 PSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        86 ~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      .+||+||+.++.+ ++.|..||++
T Consensus        75 ~~Lv~~y~~~~~~l~~~L~~P~pk   98 (98)
T 3us4_A           75 MDMVEHYSKDKGAICTKLVRPKRK   98 (98)
T ss_dssp             HHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHHHhhhCCCCCeEcCCccCCC
Confidence            9999999999877 7899999975

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*

Probab=99.93  E-value=6.1e-26  Score=169.45  Aligned_cols=97  Identities=24%  Similarity=0.483  Sum_probs=85.0

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC------Ccc
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKT   81 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~------~~~   81 (288)
                      ++.++||||.|+|++||++|++...+|+||||+|++.+|.|+|||+.++.|+||+|.+...+   . |.++      ...
T Consensus         1 l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~g~~~~~   76 (104)
T 1d4t_A            1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETG---S-WSAETAPGVHKRY   76 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS---C-EEECBCTTSCCCC
T ss_pred             CCCCceEccCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCCEEEEEEECCeEEEEEEEECCCC---e-EEEeccCCCCCcc
Confidence            46789999999999999999754356999999999889999999999999999999976544   4 8886      479


Q ss_pred             cCChhhhhhhheecccC-CCcccccccc
Q psy5076          82 FSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      |+||.+||+||+.++++ ++.|..||++
T Consensus        77 F~sl~~LV~~y~~~~~~l~~~L~~P~~r  104 (104)
T 1d4t_A           77 FRKIKNLISAFQKPDQGIVIPLQYPVEK  104 (104)
T ss_dssp             BSSHHHHHHHHTSSSSSSSSCCCEECCC
T ss_pred             cCCHHHHHHHHhhCCCCCeEECCCcCCC
Confidence            99999999999999877 7889999874

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.93  E-value=5.8e-26  Score=173.44  Aligned_cols=102  Identities=24%  Similarity=0.509  Sum_probs=91.8

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCccc
Q psy5076           3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTF   82 (288)
Q Consensus         3 ~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F   82 (288)
                      +..+.++.++||||.|+|++||++|+....+|+||||+|++..|.|+|||+.++.|+||+|.+...+   . |++++..|
T Consensus         8 ~~~~~l~~~~WyhG~isR~~Ae~lL~~~g~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~F   83 (119)
T 2gsb_A            8 REEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNN---Q-FMMGGRYY   83 (119)
T ss_dssp             SCCCSGGGCSSBCCSSCHHHHHHHHHHTCCSSEEEEEECSSSTTCEEEEEECSSCBCCCCEEEETTT---E-EEESSCCB
T ss_pred             CCCcccccCCcccCCCCHHHHHHHHhhcCCCCeEEEEeCCCCCCceEEEEEECCEEEEEEEEEcCCC---C-EEECCccc
Confidence            4667888999999999999999999875456999999999889999999999999999999987654   4 88988999


Q ss_pred             CChhhhhhhheecccC-CCcccccccc
Q psy5076          83 SDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      .||.+||+||+.+++. ++.|+.||++
T Consensus        84 ~sl~~LI~~y~~~~l~~~~~L~~Pv~~  110 (119)
T 2gsb_A           84 NSIGDIIDHYRKEQIVEGYYLKEPVPM  110 (119)
T ss_dssp             SCHHHHHHHHTTSCSBTTBCCCCCCCC
T ss_pred             CCHHHHHHHHhhCccCCCCEeCCccCC
Confidence            9999999999999886 6789999987

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=171.38  Aligned_cols=102  Identities=28%  Similarity=0.461  Sum_probs=90.2

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC----
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD----   79 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~----   79 (288)
                      ++.+++.++||||.|+|++||++|+....+|+||||+|++..|.|+|||+.++.|+||+|.+...+   . |+|.+    
T Consensus         3 ~~~~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~g~   78 (119)
T 2ysx_A            3 SGSSGMVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDD---K-FTVQASEGV   78 (119)
T ss_dssp             CCCSSCCCSSEEESCCHHHHHHHHHHHCCTTEEEEEECSSCTTSEEEEEECSSCEEEEEEEECTTS---C-EEECCSCSS
T ss_pred             CccCCCCCccccCCCCHHHHHHHHhhcCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCC---C-EEEeccCCc
Confidence            578899999999999999999999863356999999999889999999999999999999986544   4 88873    


Q ss_pred             --cccCChhhhhhhheecccC-CCcccccccce
Q psy5076          80 --KTFSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        80 --~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                        ..|.||.+||+||+.++++ ++.|+.||+++
T Consensus        79 ~~~~F~sl~eLV~~y~~~~~~l~~~L~~P~~~~  111 (119)
T 2ysx_A           79 SMRFFTKLDQLIEFYKKENMGLVTHLQYPVPLE  111 (119)
T ss_dssp             SCCCBSSHHHHHHHTTSSSSSSSSCCCEECCCC
T ss_pred             CCcccCCHHHHHHHHhhCCCCCCeECCCcCCCC
Confidence              6899999999999999887 78899999873

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*

Probab=99.92  E-value=3e-25  Score=166.01  Aligned_cols=97  Identities=28%  Similarity=0.570  Sum_probs=84.9

Q ss_pred             CCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEee-----CCeEEEEEEEeecCCCcceEEeeC-Cc
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG-DK   80 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~-~~   80 (288)
                      ++.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.     ++.|+||+|...+.+   . |++. +.
T Consensus         1 l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g---~-~~l~~~~   76 (105)
T 1lkk_A            1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG---G-FYISPRI   76 (105)
T ss_dssp             CCCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS---C-EESSTTS
T ss_pred             CCcCceecCCCCHHHHHHHHHhcCCCCceEEEEECCCCCCcEEEEEEEcccCCCCcEEEEEEEECCCC---C-EEECCCc
Confidence            4678999999999999999985 4566999999999889999999998     689999999986543   3 8886 57


Q ss_pred             ccCChhhhhhhheecccC-CCcccccccc
Q psy5076          81 TFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        81 ~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      .|+||.+||+||+.++++ ++.|..||++
T Consensus        77 ~F~sl~~LI~~y~~~~~~l~~~L~~P~~~  105 (105)
T 1lkk_A           77 TFPGLHELVRHYTNASDGLCTRLSRPCQT  105 (105)
T ss_dssp             CBSSHHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             eeCCHHHHHHHHhhCCCCCccCCcCcCCC
Confidence            999999999999999877 7889999975

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A

Probab=99.92  E-value=3e-25  Score=166.23  Aligned_cols=97  Identities=32%  Similarity=0.572  Sum_probs=86.2

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCCh
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL   85 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl   85 (288)
                      .++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+||++.++.|+||+|...++    . |++. +..|+||
T Consensus         4 ~L~~~~Wyhg~isr~~Ae~lL~~~-~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g----~-~~l~~~~~F~sl   77 (106)
T 3eaz_A            4 KLSLMPWFHGKITREQAERLLYPP-ETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHAS----K-LSIDEEVYFENL   77 (106)
T ss_dssp             TGGGCTTBCCSCCHHHHHHHTCSC-CTTEEEEEECTTSTTCEEEEEEETTEEEEEECEEETT----E-EESSSSSCBSSH
T ss_pred             ccccCCCcCCCCCHHHHHHHhCCC-CCCEEEEEECCCCCCcEEEEEEeCCceEEEEEEecCC----E-EEECCCCccCCH
Confidence            466789999999999999999865 4599999999988999999999999999999997643    3 8887 5799999


Q ss_pred             hhhhhhheecccC-CCcccccccce
Q psy5076          86 PSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        86 ~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      .+||+||+.++.+ ++.|..||++.
T Consensus        78 ~~Lv~~y~~~~~gl~~~L~~P~~~~  102 (106)
T 3eaz_A           78 MQLVEHYTSDADGLCTRLIKPKVME  102 (106)
T ss_dssp             HHHHHHHHHCCTTSSSCCCEECCCC
T ss_pred             HHHHHHHhhCCCCCCeecCCcCCCC
Confidence            9999999999877 78899999873

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A

Probab=99.92  E-value=5e-25  Score=164.74  Aligned_cols=99  Identities=26%  Similarity=0.502  Sum_probs=83.6

Q ss_pred             CCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeec-CCCcceEEeeC--CcccC
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT-NTEQQTCYKIG--DKTFS   83 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~-~~~~~~~~~~~--~~~F~   83 (288)
                      |+.++||||.|+|++||++|+.. ..+|+||||+|++.+|.|+|||+.++.|+||+|...+ .+  ...|.++  ...|+
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~g--~~~~~~~~~~~~F~   79 (105)
T 1nrv_A            2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDG--QTFFSLDDGNTKFS   79 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-------CCEESSTTSSCBS
T ss_pred             CccCcccCCCCCHHHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEeCCEEEEEEEEEEcCCC--CEEEEEcCCCcccC
Confidence            78899999999999999999864 4669999999998899999999999999999999753 22  1125565  47999


Q ss_pred             ChhhhhhhheecccC-CCcccccccc
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ||.+||+||+.++++ ++.|+.||++
T Consensus        80 sl~~LV~~y~~~~~~l~~~L~~p~~r  105 (105)
T 1nrv_A           80 DLIQLVDFYQLNKGVLPCKLKHHCIR  105 (105)
T ss_dssp             SHHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             CHHHHHHHhhhCCCCCcEeCCCcCCC
Confidence            999999999998877 7889999874

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1

Probab=99.92  E-value=4.8e-25  Score=164.32  Aligned_cols=95  Identities=29%  Similarity=0.495  Sum_probs=82.7

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC------CcccC
Q psy5076          10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKTFS   83 (288)
Q Consensus        10 ~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~------~~~F~   83 (288)
                      .++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.+++|+||+|.+...+   . |++.      ...|+
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~g~~~~~F~   77 (103)
T 1i3z_A            2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG---Y-YRIETDAHTPRTIFP   77 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTS---C-EEECBCTTSCCCEES
T ss_pred             CCccccCCCCHHHHHHHHhhcCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEECCCC---e-EEEeccCCCCCcccC
Confidence            468999999999999999864466999999999889999999999999999999976544   4 8886      47899


Q ss_pred             ChhhhhhhheecccC-CCcccccccc
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ||.+||+||+.++.+ ++.|+.||++
T Consensus        78 sl~~LV~~y~~~~~~l~~~L~~P~~R  103 (103)
T 1i3z_A           78 NLQELVSKYGKPGQGLVVHLSNPIMR  103 (103)
T ss_dssp             SSHHHHHHTTSSSSSSSSCCCEECC-
T ss_pred             CHHHHHHHHhhCCCCCeEEcCCccCC
Confidence            999999999998866 6889999864

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}

Probab=99.92  E-value=5.9e-25  Score=169.02  Aligned_cols=99  Identities=29%  Similarity=0.572  Sum_probs=87.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCc-ccC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDK-TFS   83 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~-~F~   83 (288)
                      .+.++.++||||.|+|++||++|+....+|+||||+|+ .+|.|+|||+.++.|+||+|...+..     |.+++. .|.
T Consensus        13 ~~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~   86 (124)
T 2eob_A           13 PNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKRE-GTDSYAITFRARGKVKHCRINRDGRH-----FVLGTSAYFE   86 (124)
T ss_dssp             SCSTTTSTTEESSCCHHHHHHHHHHCCSSSEEEEECCT-TSSCEEEEEEETTEEEEEEEEESSSC-----EESSSSCCBS
T ss_pred             ccccCcCCCeecCCCHHHHHHHHhcCCCCCEEEEEecC-CCCCEEEEEEeCCeEEEEEEEECCCE-----EEECCCCcCC
Confidence            45788899999999999999999876556999999999 79999999999999999999975433     888755 599


Q ss_pred             ChhhhhhhheecccC-CCcccccccce
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      ||.+||+||+.+++. ++.|+.||+++
T Consensus        87 sl~~LV~~y~~~~~~~~~~L~~P~~~~  113 (124)
T 2eob_A           87 SLVELVSYYEKHALYRKMRLRYPVTPE  113 (124)
T ss_dssp             SHHHHHHHHTTSCSSSSCCSCEECCHH
T ss_pred             CHHHHHHHHhhCCCCCCcCCCCcCCcH
Confidence            999999999999987 78899999873

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A

Probab=99.92  E-value=3.7e-25  Score=171.20  Aligned_cols=98  Identities=23%  Similarity=0.478  Sum_probs=85.9

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC------Ccc
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKT   81 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~------~~~   81 (288)
                      ++.++||||.|+|++||++|+....+|+||||+|++..|.|+|||+.++.|+||+|.+...+   . |.++      ...
T Consensus         1 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~g~~~~~   76 (128)
T 1ka6_A            1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETG---S-WSAETAPGVHKRY   76 (128)
T ss_dssp             CCCCSSBCCSCCHHHHHHHHHHHCCTTCEEEEECSSSTTCEEEEEESSSCEEEEEEEECTTS---C-EEEECSTTSCCCE
T ss_pred             CCCCcccCCCCCHHHHHHHHhcCCCCCEEEEeecCCCCCCEEEEEEeCCEEEEEEEEECCCC---e-EEEeecCCCCCCc
Confidence            46789999999999999999754356999999999889999999999999999999976544   4 8876      479


Q ss_pred             cCChhhhhhhheecccC-CCcccccccce
Q psy5076          82 FSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      |.||.+||+||+.++.+ ++.|+.||+++
T Consensus        77 F~sl~~LV~~y~~~~~gl~~~L~~P~~~~  105 (128)
T 1ka6_A           77 FRKIKNLISAFQKPDQGIVIPLQYPVEKK  105 (128)
T ss_dssp             ESSHHHHHHHTTSSCSSSSSCCCSBCCSS
T ss_pred             cCCHHHHHHHHhhCCCCCcEEcCCcCCCC
Confidence            99999999999998876 78899999974

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...

Probab=99.92  E-value=9.2e-25  Score=166.19  Aligned_cols=97  Identities=25%  Similarity=0.461  Sum_probs=85.2

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhh
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPS   87 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~   87 (288)
                      ++.++||||.|+|++||.+|+..+.+|+||||+|++..|.|+|||+.++.|+||+|.+...+   . |++++..|.||.+
T Consensus         3 L~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~F~sl~e   78 (117)
T 3ov1_A            3 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG---K-YFLWVVKFNSLNE   78 (117)
T ss_dssp             CCCCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS---C-EESSSCEESSHHH
T ss_pred             cccCCcccCCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCCEEEEEecCCceEEEEEEECCCC---e-EEECCCCcCCHHH
Confidence            56789999999999999999987677999999999889999999999999999999876544   4 8898899999999


Q ss_pred             hhhhheecccC---CCcccccccc
Q psy5076          88 LLAFYKVHYLD---TSPLIKPATK  108 (288)
Q Consensus        88 LV~~y~~~~l~---~~~l~~p~~~  108 (288)
                      ||+||+++++.   ...|..|++.
T Consensus        79 LV~~y~~~~l~~~~~~~L~~~~~~  102 (117)
T 3ov1_A           79 LVDYHRSTSVSRNQQIFLRDIEQV  102 (117)
T ss_dssp             HHHHTTTSCSCSSSCCCCBCCCCC
T ss_pred             HHHHHhhCCCCCCCceEecCCCcC
Confidence            99999999985   3456666654

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.92  E-value=4.7e-25  Score=163.41  Aligned_cols=95  Identities=32%  Similarity=0.573  Sum_probs=84.3

Q ss_pred             CCCccccCCCHHHHHHHHcCC-CCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChhh
Q psy5076          10 RNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS   87 (288)
Q Consensus        10 ~~~Wy~g~isr~~ae~lL~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~   87 (288)
                      +++||||.|+|++||++|+.. ..+|+||||+|++.+|.|+|||+.++.|+||+|...+.+   . |++. +..|+||.+
T Consensus         1 ~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~~F~sl~~   76 (100)
T 1rja_A            1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGG---R-LHLNEAVSFLSLPE   76 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSS---C-EEEETTEEESSHHH
T ss_pred             CCCcccCCCCHHHHHHHHhccCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCC---c-EEECCCCccCCHHH
Confidence            469999999999999999873 456999999999888999999999999999999986444   4 7776 579999999


Q ss_pred             hhhhheecccC-CCcccccccc
Q psy5076          88 LLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        88 LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ||+||+.++++ ++.|+.||++
T Consensus        77 LV~~y~~~~~~l~~~L~~p~~~   98 (100)
T 1rja_A           77 LVNYHRAQSLSHGLRLAAPCRK   98 (100)
T ss_dssp             HHHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHHhhCCCCCCCCCCccCCC
Confidence            99999999987 7889999987

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}

Probab=99.92  E-value=4.3e-25  Score=166.65  Aligned_cols=98  Identities=19%  Similarity=0.358  Sum_probs=81.5

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee---CCeEEEEEEEeecCCCcceEEeeCC--
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE---NNKVSHYIINKITNTEQQTCYKIGD--   79 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~---~~~v~h~~I~~~~~~~~~~~~~~~~--   79 (288)
                      ++.++.++||||+|+|.+||.||...+.+|+||||+|++.. .|+|||+.   ...|+||+|.+.. +   . |+|..  
T Consensus         9 ~~~l~~epWff~~isR~eAE~lL~~~~~~GaFLVR~Se~~~-~ySLSVR~~~~~~~VKHYkI~~~~-G---~-y~I~~~~   82 (125)
T 3maz_A            9 VDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSR-NYSITIRQEIDIPRIKHYKVMSVG-Q---N-YTIELEK   82 (125)
T ss_dssp             --CCCCCCTTBCCCCHHHHHHHHHHCGGGCSEEEEECTTSS-SEEEEEEECSSSCEEEEEEEEEET-T---E-EEECSSS
T ss_pred             cccccCCCCCcCCCCHHHHHHHHhccCCCCcEEEEeCCCCC-CEEEEEEecCCCCCEeeeEEEEeC-C---E-EEEecCC
Confidence            45778899999999999999999776667999999998755 89999998   6799999999884 3   4 88873  


Q ss_pred             -cccCChhhhhhhheecccC-CCcccccccc
Q psy5076          80 -KTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        80 -~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                       ..|+||.+||+||++++++ +++|..||..
T Consensus        83 ~~~F~SL~eLV~yY~~~adGl~~~L~~~c~~  113 (125)
T 3maz_A           83 PVTLPNLFSVIDYFVKETRGNLRPFIASTDE  113 (125)
T ss_dssp             CEEESSHHHHHHHHHHHTTTCCCBCCC----
T ss_pred             CcCcCCHHHHHHHHHhCCCcCcccccccccc
Confidence             4799999999999999998 8899999854

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}

Probab=99.92  E-value=1e-24  Score=167.99  Aligned_cols=104  Identities=29%  Similarity=0.529  Sum_probs=89.9

Q ss_pred             CCCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee------CCeEEEEEEEeecCCCcceE
Q psy5076           1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE------NNKVSHYIINKITNTEQQTC   74 (288)
Q Consensus         1 ~~~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~------~~~v~h~~I~~~~~~~~~~~   74 (288)
                      |++..+.++.++||||.|+|++||++|+....+|+||||+| +.+|.|+|||+.      ++.|+||+|...+.+   . 
T Consensus         1 ~~~~~~~l~~~~WyhG~isR~eAe~lL~~~g~~G~FLVR~S-s~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g---~-   75 (125)
T 2ge9_A            1 MTEAEDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQS---Q-   75 (125)
T ss_dssp             -CCCCCSSCCSSSEETTCCHHHHHHHHHHHTCTTEEEEEEC-SSSCCEEEEEEESSSSSTTCEEEEEECEEETTT---E-
T ss_pred             CCccccccccCCccccCCCHHHHHHHHhhcCCCceEEEEec-CCCCCEEEEEEeccccCCCCeEEEEEEEEcCCC---C-
Confidence            67777889999999999999999999986545699999999 568999999997      479999999987654   4 


Q ss_pred             EeeC-CcccCChhhhhhhheecccC-CCcccccccce
Q psy5076          75 YKIG-DKTFSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        75 ~~~~-~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      |++. +..|.||.+||+||+.++++ ++.|+.||+++
T Consensus        76 ~~l~~~~~F~sl~eLV~~y~~~~~~l~~~L~~P~~~~  112 (125)
T 2ge9_A           76 YYLAEKHLFSTIPELINYHQHNSAGLISRLKYPVSQQ  112 (125)
T ss_dssp             EESSTTSCBSSHHHHHHHHHCCCTTCSCCSSEECCSS
T ss_pred             EEECCCCcCCCHHHHHHHhhhCCCCCceeCCCccCCC
Confidence            8886 57999999999999999876 78899999874

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.92  E-value=7.7e-25  Score=164.76  Aligned_cols=95  Identities=54%  Similarity=0.959  Sum_probs=83.3

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCC--------------cceEEee
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE--------------QQTCYKI   77 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~--------------~~~~~~~   77 (288)
                      +||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.+++|+||+|...+...              .+. |.+
T Consensus         1 ~Wyhg~isr~~Ae~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~g~~~~~-~~l   78 (109)
T 1ju5_A            1 SWYWGRLSRQEAVALLQGQ-RHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSR-LRI   78 (109)
T ss_dssp             CCEETTCCHHHHHHHHTTC-CTTEEEEEECSSSTTEEEEEEECSSCEEEEEEECCSSSSCCCCCCSSCCTTCCCCC-EEE
T ss_pred             CccccCCCHHHHHHHhcCC-CCCEEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcccccccccccccccccE-EEe
Confidence            6999999999999999754 459999999998899999999999999999999765310              024 888


Q ss_pred             CCcccCChhhhhhhheecccCCCcccccccc
Q psy5076          78 GDKTFSDLPSLLAFYKVHYLDTSPLIKPATK  108 (288)
Q Consensus        78 ~~~~F~sl~~LV~~y~~~~l~~~~l~~p~~~  108 (288)
                      ++..|+||.+||+||+.+++.++.|+.||++
T Consensus        79 ~~~~F~sl~~LV~~y~~~~l~~~~L~~Pv~r  109 (109)
T 1ju5_A           79 GDQEFDSLPALLEFYKIHYLDTTTLIEPVSR  109 (109)
T ss_dssp             TTEEESSHHHHHHHHHHSCSSSSCCCEESCC
T ss_pred             CCcccCCHHHHHHHHhhCCCCCeecCccCCC
Confidence            8889999999999999999988889999874

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A

Probab=99.92  E-value=8.4e-25  Score=165.45  Aligned_cols=96  Identities=29%  Similarity=0.489  Sum_probs=85.1

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChh
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLP   86 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~   86 (288)
                      ++.++||||.|+|++||++|+.. .+|+||||+|++..|.|+|||+.+++|+||+|.+...+   . |++. +..|.||.
T Consensus         2 L~~~~Wyhg~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~~~~~~~F~sl~   76 (112)
T 3k2m_A            2 LEKHSWYHGPVSRNAAEYLLSSG-INGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDG---K-LYVSSESRFNTLA   76 (112)
T ss_dssp             GGGSTTEEESCCHHHHHHHTTTC-CTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS---C-EESSTTCCBSSHH
T ss_pred             CccCcceeeCCCHHHHHHHhccC-CCceEEEEeCCCCCCCEEEEEEeCCcEEEEEEEECCCC---c-EEECCCCeECCHH
Confidence            56789999999999999999764 45999999999889999999999999999999986554   4 6665 67999999


Q ss_pred             hhhhhheecccC-CCcccccccc
Q psy5076          87 SLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        87 ~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      +||+||+.++.+ ++.|..||++
T Consensus        77 ~LV~~y~~~~~~l~~~L~~P~~~   99 (112)
T 3k2m_A           77 ELVHHHSTVADGLITTLHYPAPK   99 (112)
T ss_dssp             HHHHHHHHCCTTSSSCCCEECCC
T ss_pred             HHHHHHhhCCCCCccCCCCCCCC
Confidence            999999998876 7889999987

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A

Probab=99.91  E-value=6.4e-25  Score=166.65  Aligned_cols=102  Identities=28%  Similarity=0.534  Sum_probs=89.3

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEee----CCeEEEEEEEeecCCCcceEEee
Q psy5076           3 GTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE----NNKVSHYIINKITNTEQQTCYKI   77 (288)
Q Consensus         3 ~~~~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~----~~~v~h~~I~~~~~~~~~~~~~~   77 (288)
                      ...+.++.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.    ++.|+||+|...+.+   . |++
T Consensus         4 a~~~~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~~g---~-~~l   79 (114)
T 1blj_A            4 APVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNG---G-YYI   79 (114)
T ss_dssp             CSSCCSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTT---E-EEE
T ss_pred             CccCccccCCccCCCCCHHHHHHHHhhCCCCCceEEEEeCCCCCCCEEEEEEEecCCCCcEEEEEEEEcCCC---C-EEE
Confidence            356778899999999999999999986 3466999999999889999999998    689999999987544   4 777


Q ss_pred             C-CcccCChhhhhhhheecccC-CCcccccccc
Q psy5076          78 G-DKTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        78 ~-~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      . +..|.||.+||+||+.++++ ++.|..||++
T Consensus        80 ~~~~~F~sl~~LV~~y~~~~~~l~~~L~~p~~~  112 (114)
T 1blj_A           80 SPRITFPTLQALVQHYSKKGDGLCQKLTLPCVN  112 (114)
T ss_dssp             ETTEEESSHHHHHHHHHHCCSSSSSCCCCCSCC
T ss_pred             CCCcccCCHHHHHHHhhhCCCCCceecCccCCC
Confidence            5 57999999999999999877 7899999987

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.91  E-value=1e-24  Score=164.45  Aligned_cols=100  Identities=21%  Similarity=0.470  Sum_probs=85.8

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee------CCeEEEEEEEeecCCCcceEEe
Q psy5076           3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE------NNKVSHYIINKITNTEQQTCYK   76 (288)
Q Consensus         3 ~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~------~~~v~h~~I~~~~~~~~~~~~~   76 (288)
                      ..-+.++.++||||.|+|++||++|+....+|+||||+| +.+|.|+|||+.      ++.|+||+|.....+   . |+
T Consensus         3 ~~~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g---~-~~   77 (110)
T 2ekx_A            3 SGSSGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHYHVHTNAEN---K-LY   77 (110)
T ss_dssp             CCSSCTTTSSSBCCSCCHHHHHHHHHHTCCTTEEEEEEC-SSTTCEEEEECCCCSSCSSCCCEEEECEECTTC---C-EE
T ss_pred             CccCcccCCCeecCCCCHHHHHHHHhccCCCceEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEECCCC---C-EE
Confidence            345678899999999999999999987646699999999 458999999997      479999999987544   4 88


Q ss_pred             eC-CcccCChhhhhhhheecccC-CCccccccc
Q psy5076          77 IG-DKTFSDLPSLLAFYKVHYLD-TSPLIKPAT  107 (288)
Q Consensus        77 ~~-~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~  107 (288)
                      +. +..|+||.+||+||+.++.+ ++.|+.||+
T Consensus        78 l~~~~~F~sl~~LV~~y~~~~~~l~~~L~~Pv~  110 (110)
T 2ekx_A           78 LAENYCFDSIPKLIHYHQHNSAGMITRLRHPVS  110 (110)
T ss_dssp             SSTTCCCSCHHHHHHHHHHSCCSSSCCCCEECC
T ss_pred             ECCCCccCCHHHHHHHHeeCCCCCceecCccCC
Confidence            86 57999999999999999876 788988875

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A

Probab=99.91  E-value=1.4e-24  Score=165.46  Aligned_cols=103  Identities=25%  Similarity=0.409  Sum_probs=84.9

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeec-CCCcceEEeeC--C
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT-NTEQQTCYKIG--D   79 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~-~~~~~~~~~~~--~   79 (288)
                      .-..|+.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.++.|+||+|.+.+ .+  ...|.++  .
T Consensus         7 ~~~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g--~~~~~~~~~~   84 (117)
T 3pqz_A            7 SAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEG--RLYFSMDDGQ   84 (117)
T ss_dssp             --CGGGGCTTBCCSCCHHHHHHHHHHTTCCTTEEEEEECCC-CCCEEEEEEETTEEEEEEEEEECCTT--CCEEESSTTS
T ss_pred             ChhhcccCccccCCCCHHHHHHHHhcCCCCCCEEEEEecCCCCCcEEEEEEeCCeeEEEEEEEecCCC--CEEEEECCCC
Confidence            45678889999999999999999986 34569999999999889999999999999999999853 32  1214443  4


Q ss_pred             cccCChhhhhhhheecccC-CCcccccccc
Q psy5076          80 KTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        80 ~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ..|+||.+||+||+.++++ ++.|..||++
T Consensus        85 ~~F~sl~~LV~~y~~~~~~l~~~L~~P~~~  114 (117)
T 3pqz_A           85 TRFTDLLQLVEFHQLNRGILPCLLRHCCTR  114 (117)
T ss_dssp             SCBSSHHHHHHHHHHCCTTSSSCCCEECC-
T ss_pred             cccCCHHHHHHHHhhCCCCCcEECCCcCcc
Confidence            7999999999999999887 7899999987

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.91  E-value=1.8e-24  Score=179.12  Aligned_cols=130  Identities=18%  Similarity=0.314  Sum_probs=109.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccccccCCCCCCCCCCCC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQ  189 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (288)
                      ...++|+|+|.+...++|+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+........               
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~~~~~---------------   74 (193)
T 1ng2_A           11 LQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQ-MKAKRGWIPASFLEPLDSPDETED---------------   74 (193)
T ss_dssp             CEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEE-ECCCCCCCCGGGCCCSSCSSCSCC---------------
T ss_pred             CcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEE-ECCeeeEechheEEeeccccccch---------------
Confidence            4679999999999999999999999999999889999999 889999999999987665421000               


Q ss_pred             CCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         190 QQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                            ..+..   ....++|+|+|  .+...+||+|.+||+|.|+++.++|||.|+++|+.||||++||+.+....
T Consensus        75 ------~~p~~---~~~~~~al~dy--~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  140 (193)
T 1ng2_A           75 ------PEPNY---AGEPYVAIKAY--TAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDV  140 (193)
T ss_dssp             ------CCCCT---TCEEEEESSCB--CCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTSCH
T ss_pred             ------hhccc---cceeeeecccc--CCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCCCc
Confidence                  00111   13478999999  56778899999999999999999999999999999999999999997654

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.91  E-value=1.2e-24  Score=166.65  Aligned_cols=100  Identities=30%  Similarity=0.573  Sum_probs=87.7

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccC
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (288)
                      ..++.++||||.|+|++||++|+. ...+|+||||+|++..|.|+|||+.++.|+||+|.....+   . |++. +..|.
T Consensus        11 ~~l~~~~WyhG~isR~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~~F~   86 (121)
T 2dly_A           11 RSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEG---G-FFLTRRKVFS   86 (121)
T ss_dssp             GGGGGCSSBCSSCCHHHHHHHHTSSSCCTTCEEEEECSSSSSCEEEEEESSSCEEEEEEEECSSS---C-EEEETTEEES
T ss_pred             cccCcCCccccCCCHHHHHHHHhcCCCCCCEEEEEcCCCCCCceEEEEEECCeEEEEEEEEcCCC---C-EEECCCCccC
Confidence            457778999999999999999985 4567999999999889999999999999999999985443   3 7775 67999


Q ss_pred             ChhhhhhhheecccC-CCcccccccce
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      ||.+||+||+.++++ ++.|+.||++.
T Consensus        87 sl~eLV~~y~~~~~~l~~~L~~P~~~~  113 (121)
T 2dly_A           87 TLNEFVNYYTTTSDGLCVKLEKPCLKI  113 (121)
T ss_dssp             SHHHHHHHHTTCCSSSSSCCCSBCCCC
T ss_pred             CHHHHHHHHhhCCCCCceeCCeecCCC
Confidence            999999999999887 78899999873

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*

Probab=99.91  E-value=2.1e-24  Score=158.52  Aligned_cols=85  Identities=27%  Similarity=0.551  Sum_probs=76.9

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhhhh
Q psy5076          10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL   89 (288)
Q Consensus        10 ~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~LV   89 (288)
                      +++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.++.|+||+|.....+   . |++.+..|+||.+||
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~F~sl~~LV   77 (96)
T 1jyr_A            2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG---K-YFLWVVKFNSLNELV   77 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS---C-EESSSCEESSHHHHH
T ss_pred             CcceeccCCCHHHHHHHHhcCCCCcEEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCC---C-EEECCcccCCHHHHH
Confidence            469999999999999999886546999999999889999999999999999999986544   4 889889999999999


Q ss_pred             hhheecccC
Q psy5076          90 AFYKVHYLD   98 (288)
Q Consensus        90 ~~y~~~~l~   98 (288)
                      +||+.+++.
T Consensus        78 ~~y~~~~l~   86 (96)
T 1jyr_A           78 DYHRSTSVS   86 (96)
T ss_dssp             HHTTSSCSC
T ss_pred             HHHhhCCCC
Confidence            999999875

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*

Probab=99.91  E-value=3.6e-25  Score=165.90  Aligned_cols=98  Identities=35%  Similarity=0.650  Sum_probs=85.5

Q ss_pred             CCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEee-----CCeEEEEEEEeecCCCcceEEeeC-C
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG-D   79 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~-~   79 (288)
                      +++.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.     ++.|+||+|...+.+   . |++. +
T Consensus         1 sl~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g---~-~~l~~~   76 (106)
T 1aot_F            1 SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNG---G-YYITTR   76 (106)
T ss_dssp             CCCSSSSCCBSCCHHHHHHHHHTTTCCTTEECCBCBSSSSSBBCCEEECCBTTTBCCEEECCBEEETTT---E-EEEETT
T ss_pred             CCccCccCCCCCCHHHHHHHHhhCCCCCcEEEEEeCCCCCCCEEEEEEecccCCCCcEEEEEEEEeCCC---C-EEECCC
Confidence            46788999999999999999985 4466999999999889999999996     789999999987544   4 7775 6


Q ss_pred             cccCChhhhhhhheecccC-CCcccccccc
Q psy5076          80 KTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        80 ~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ..|+||.+||+||+.++.+ ++.|..||++
T Consensus        77 ~~F~sl~~LV~~y~~~~~~l~~~L~~p~~~  106 (106)
T 1aot_F           77 AQFETLQQLVQHYSERAAGLSSRLVVPSHK  106 (106)
T ss_dssp             EEESSHHHHHHHHTTCCTTSSSCSCSSCCC
T ss_pred             CccCCHHHHHHHhccCCCCCcEeecccCCC
Confidence            7999999999999998876 7889999975

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A

Probab=99.91  E-value=1.6e-24  Score=163.09  Aligned_cols=98  Identities=27%  Similarity=0.460  Sum_probs=80.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCC
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSD   84 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~s   84 (288)
                      +.++.++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.++.|+||+|...+..     |.+. +..|+|
T Consensus         2 ~~l~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~s   76 (109)
T 3tkz_A            2 SHMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDY-----YDLYGGEKFAT   76 (109)
T ss_dssp             -----CCSBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSC-----EESSSSCCBSS
T ss_pred             CccccCCceecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEeCCCE-----EEecCCcccCC
Confidence            3567889999999999999999864456999999999889999999999999999999875433     7664 679999


Q ss_pred             hhhhhhhheecccC-------CCcccccccc
Q psy5076          85 LPSLLAFYKVHYLD-------TSPLIKPATK  108 (288)
Q Consensus        85 l~~LV~~y~~~~l~-------~~~l~~p~~~  108 (288)
                      |.+||+||+.+++.       .+.|++||++
T Consensus        77 l~~LV~~y~~~~~~l~~~~gl~~~L~~Pv~~  107 (109)
T 3tkz_A           77 LAELVQYYMEHHGQLKEKNGDVIELKYPLNC  107 (109)
T ss_dssp             HHHHHHHHHHSTTSEEETTSCBCCCCEECC-
T ss_pred             HHHHHHHHHhCcCccccCCCceEECCCcccC
Confidence            99999999998742       4688889876

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A

Probab=99.91  E-value=1.6e-24  Score=163.79  Aligned_cols=100  Identities=29%  Similarity=0.491  Sum_probs=85.2

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEee-C-Cc
Q psy5076           3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-G-DK   80 (288)
Q Consensus         3 ~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~-~~   80 (288)
                      ++++.++.++||||.|+|++||++|+.. .+|+||||+| +..|.|+|||+.++.|+||+|...+.+     |++ + ..
T Consensus         2 ~~~~~~~~~~Wyhg~isR~~Ae~lL~~~-~~G~FLVR~S-~~~g~y~LSv~~~~~v~H~~I~~~~~g-----~~~~~~~~   74 (112)
T 1h9o_A            2 SPIPHHDEKTWNVGSSNRNKAENLLRGK-RDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATG-----YGFAEPYN   74 (112)
T ss_dssp             CSCGGGSGGGTBCCSCCHHHHHHHHTTC-CTTEEEEEEC-SSTTCEEEEEEETTEEEEEEEEEETTE-----EESSTTCC
T ss_pred             CCCccccCCCcccCCCCHHHHHHHhcCC-CCceEEEeec-CCCCCEEEEEEECCEEEEEEEEEcCCc-----eEEeCCCC
Confidence            4567888999999999999999999754 5599999999 778999999999999999999987655     554 3 46


Q ss_pred             ccCChhhhhhhheecccC------CCcccccccce
Q psy5076          81 TFSDLPSLLAFYKVHYLD------TSPLIKPATKT  109 (288)
Q Consensus        81 ~F~sl~~LV~~y~~~~l~------~~~l~~p~~~~  109 (288)
                      .|.||.+||+||+.+++.      .+.|+.||+++
T Consensus        75 ~F~sl~~LV~~y~~~~l~~~~~gl~~~L~~P~~~~  109 (112)
T 1h9o_A           75 LYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQ  109 (112)
T ss_dssp             CBSSHHHHHHHHHHSCGGGTCTTCCCCCCEETTC-
T ss_pred             CcCCHHHHHHHHhhCcccccCCCcCeeCCCCcCCC
Confidence            999999999999987642      57889998873

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=8.8e-25  Score=166.93  Aligned_cols=102  Identities=28%  Similarity=0.457  Sum_probs=89.0

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-Ccc
Q psy5076           3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKT   81 (288)
Q Consensus         3 ~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~   81 (288)
                      ..++.++.++||||.|+|++||++|+.. .+|+||||+|++..|.|+|||+.++.|+||+|.+...+   . |++. +..
T Consensus         8 ap~~~l~~~~WyhG~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~~   82 (119)
T 2ecd_A            8 TPVNSLEKHSWYHGPVSRSAAEYLLSSL-INGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADG---K-VYVTAESR   82 (119)
T ss_dssp             CSSCCCCCSSSEEEECCHHHHHHHHHTS-CTTBEEEEEESSSTTEEEEEEECSSCEEEECCCCCSSS---C-CCCCSSCC
T ss_pred             ccccccccCccccCCCCHHHHHHHhcCC-CCCeEEEEeCCCCCCCEEEEEEECCeEEEEEEEEcCCC---C-EEEcCCCc
Confidence            3567888999999999999999999764 45999999999889999999999999999999975444   3 6665 689


Q ss_pred             cCChhhhhhhheecccC-CCcccccccce
Q psy5076          82 FSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      |.||.+||+||+.++.+ ++.|+.||++.
T Consensus        83 F~sl~~LV~~y~~~~~gl~~~L~~P~~~~  111 (119)
T 2ecd_A           83 FSTLAELVHHHSTVADGLVTTLHYPAPKC  111 (119)
T ss_dssp             CSSHHHHHHHHHHCCTTSSSCCCBCCSSC
T ss_pred             CCCHHHHHHHHhhCCCCCceECCCccCCC
Confidence            99999999999998776 78899999873

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=1.9e-24  Score=164.84  Aligned_cols=100  Identities=25%  Similarity=0.434  Sum_probs=87.4

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-Cccc
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTF   82 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F   82 (288)
                      ....++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|.+.++    . |++. ...|
T Consensus         9 ~~~~l~~~~WyhG~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~g----~-~~l~~~~~F   82 (118)
T 2dlz_A            9 REIDYTAYPWFAGNMERQQTDNLLKSH-ASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDN----W-IHITEAKKF   82 (118)
T ss_dssp             CCCCGGGSTTEEESCCHHHHHHHHHHS-CTTBEEEECCSCSSCCEEEEEECSSSEEEEEEEEETT----E-EESTTSCCB
T ss_pred             CccccccCCceecCCCHHHHHHHhcCC-CCCEEEEEeCCCCCCCEEEEEEECCcEEEEEEEEcCC----E-EEEeCCccc
Confidence            355677889999999999999999876 4599999999988999999999999999999998643    3 8887 5799


Q ss_pred             CChhhhhhhheecccC------CCcccccccce
Q psy5076          83 SDLPSLLAFYKVHYLD------TSPLIKPATKT  109 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l~------~~~l~~p~~~~  109 (288)
                      .||.+||+||+.+++.      ++.|+.||+++
T Consensus        83 ~sl~~LV~~y~~~~l~~~~~gl~~~L~~Pv~~p  115 (118)
T 2dlz_A           83 DSLLELVEYYQCHSLKESFKQLDTTLKYPYSGP  115 (118)
T ss_dssp             SSHHHHHHHHTTSCTTTTCTTCCCCCCBCCSCC
T ss_pred             CCHHHHHHHHhhCcccccCCCcccEeCCcCCCC
Confidence            9999999999999873      46799999873

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*

Probab=99.91  E-value=8.1e-25  Score=162.64  Aligned_cols=95  Identities=26%  Similarity=0.512  Sum_probs=79.4

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhh
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPS   87 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~   87 (288)
                      .+.++||||.|+|++||++|+....+|+||||+|++..|.|+|||+.++.|+||+|...++    . |.+++..|+||.+
T Consensus         2 p~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g----~-~~l~~~~F~sl~~   76 (102)
T 2cia_A            2 PLGSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDN----V-YCIGQRRFHTMDE   76 (102)
T ss_dssp             ---CTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEECCSSSCEEEEEEEETT----E-EEETTEEESSHHH
T ss_pred             CcCCccccCCCCHHHHHHHHhhCCCCcEEEEEECCCCCCCEEEEEEeCCeeEEEEEEecCC----E-EEECCcCcCCHHH
Confidence            3568999999999999999965345699999999988999999999999999999995443    3 9999899999999


Q ss_pred             hhhhheecccC------CCccccccc
Q psy5076          88 LLAFYKVHYLD------TSPLIKPAT  107 (288)
Q Consensus        88 LV~~y~~~~l~------~~~l~~p~~  107 (288)
                      ||+||+.+++.      ...|+.|++
T Consensus        77 LV~~y~~~~l~~~~~~~~~~L~~Pip  102 (102)
T 2cia_A           77 LVEHYKKAPIFTSEHGEKLYLVRALQ  102 (102)
T ss_dssp             HHHHHHHSCSEECTTSCEECCCEECC
T ss_pred             HHHHHhhCccccCCCCceEEeCCCCC
Confidence            99999998873      245666653

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*

Probab=99.91  E-value=1.1e-24  Score=162.47  Aligned_cols=94  Identities=28%  Similarity=0.483  Sum_probs=82.3

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChh
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLP   86 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~   86 (288)
                      .++.++||||.|+|++||++|+   .+|+||||+|++.+|.|+|||+.++.|+||+|...+ +   . |.+++..|+||.
T Consensus         3 ~l~~~~Wyhg~isR~~Ae~lL~---~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~-g---~-~~~~~~~F~sl~   74 (104)
T 1mil_A            3 QLRGEPWFHGKLSRREAEALLQ---LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPE-G---V-VRTKDHRFESVS   74 (104)
T ss_dssp             STTTCTTBCSSCCHHHHHTTCC---STTEEEEEECCSSCSSEEEEEEETTEEEEEEEBCTT-S---S-EECSSCEESSHH
T ss_pred             ccccCCcCCCCCCHHHHHHHhc---cCCcEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCC-C---E-EEECCceeCCHH
Confidence            5678899999999999999997   359999999998899999999999999999996332 2   3 888889999999


Q ss_pred             hhhhhheecccC------CCcccccccc
Q psy5076          87 SLLAFYKVHYLD------TSPLIKPATK  108 (288)
Q Consensus        87 ~LV~~y~~~~l~------~~~l~~p~~~  108 (288)
                      +||+||+.+++.      .+.|..||++
T Consensus        75 ~LI~~y~~~~~p~~~~g~~~~L~~Pv~r  102 (104)
T 1mil_A           75 HLISYHMDNHLPIISAGSELCLQQPVER  102 (104)
T ss_dssp             HHHHHHHHHTCCEEETTEEECCCEECCC
T ss_pred             HHHHHHhhCCCccccCCceEEeCccCCC
Confidence            999999998762      4578899886

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}

Probab=99.91  E-value=3.6e-24  Score=164.87  Aligned_cols=99  Identities=25%  Similarity=0.475  Sum_probs=84.7

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeec-CCCcceEEe--eC--C
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT-NTEQQTCYK--IG--D   79 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~-~~~~~~~~~--~~--~   79 (288)
                      ..++.++||||.|+|++||++|+.. ..+|+||||+|++.+|.|+|||+.++.|+||+|...+ .+   . |+  ++  .
T Consensus        21 ~~l~~~~WyhG~isR~eAe~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~G---~-~~~~l~~~~   96 (126)
T 2aug_A           21 MIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDG---E-MFHTLDDGH   96 (126)
T ss_dssp             -CGGGSTTEETTCCHHHHHHHHHTTTCCTTEEEEEECSSSSCCEEEEEEETTEEEEEEEEEEEETT---E-EEEESSTTS
T ss_pred             cccccCCcccCCCCHHHHHHHHhccCCCCCEEEEeecCCCCCCEEEEEEcCCeEEEEEEEEECCCC---e-EEEEeCCCC
Confidence            4677789999999999999999864 4569999999998899999999999999999999853 33   3 44  34  4


Q ss_pred             cccCChhhhhhhheecccC-CCcccccccc
Q psy5076          80 KTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        80 ~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ..|+||.+||+||+.++++ ++.|+.||++
T Consensus        97 ~~F~SL~eLV~~y~~~~~~l~~~L~~P~~r  126 (126)
T 2aug_A           97 TRFTDLIQLVEFYQLNKGVLPCKLKHYCAR  126 (126)
T ss_dssp             SCBSSHHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             CccCCHHHHHHHHhhCCCCCceecCCCcCC
Confidence            6999999999999998877 7889999874

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.91  E-value=4.5e-24  Score=162.95  Aligned_cols=101  Identities=24%  Similarity=0.537  Sum_probs=87.4

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC--Cc
Q psy5076           3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DK   80 (288)
Q Consensus         3 ~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~   80 (288)
                      ..+..++.++||||.|+|++||++|+.. .+|+||||+|++..+ |+|||+.++.|+||+|...+.+   . |++.  ..
T Consensus         8 ~~~~~~~~~~WyhG~isR~~Ae~lL~~~-~~G~FLVR~S~~~~~-y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~~   81 (119)
T 2cs0_A            8 GQLAQDGVPEWFHGAISREDAENLLESQ-PLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDG---T-FMIPGEKV   81 (119)
T ss_dssp             SCCCSSSCCSSBCSSCCHHHHHHHHHTS-CTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTS---C-EECTTCSC
T ss_pred             hhhccccCCCccccCCCHHHHHHHhcCC-CCCEEEEEecCCCCC-EEEEEEECCEEEEEEEEEcCCC---c-EEEecCCC
Confidence            3456788899999999999999999754 459999999998888 9999999999999999987543   3 8885  47


Q ss_pred             ccCChhhhhhhheecccC--CCcccccccce
Q psy5076          81 TFSDLPSLLAFYKVHYLD--TSPLIKPATKT  109 (288)
Q Consensus        81 ~F~sl~~LV~~y~~~~l~--~~~l~~p~~~~  109 (288)
                      .|.||.+||+||+.+++.  ++.|+.||+++
T Consensus        82 ~F~sl~eLV~~y~~~~l~~~~~~L~~P~~~~  112 (119)
T 2cs0_A           82 AHTSLDALVTFHQQKPIEPRRELLTQPCRQK  112 (119)
T ss_dssp             CBSSHHHHHHHHTTSCCSSCCCCCCSBCCCS
T ss_pred             cCCCHHHHHHHHhhCcCCCCCCEeCccCCCC
Confidence            999999999999999975  57899999873

>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A

Probab=99.91  E-value=3e-24  Score=164.47  Aligned_cols=100  Identities=25%  Similarity=0.432  Sum_probs=86.7

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-Cccc
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTF   82 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F   82 (288)
                      +...++.++||||.|+|++||++|+... +|+||||+|++.+|.|+|||+.++.|+||+|...+++     |++. +..|
T Consensus        15 ~~~~l~~~~WyhG~isR~eAe~lL~~~~-~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~l~~~~~F   88 (122)
T 2lnw_A           15 REIDYTAYPWFAGNMERQQTDNLLKSHA-SGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNW-----IHITEAKKF   88 (122)
T ss_dssp             SCCCSTTSTTBCCSCCHHHHHHHHHHSC-TTBEEEEECCCSSEEEEEEEECSSCEEEEEEEEETTE-----EESSSSCCB
T ss_pred             ccCCcccCcCCCcCCCHHHHHHHhcCCC-CCeEEEEeCCCCCCcEEEEEEeCCcEEEEEEEEcCCE-----EEECCCCeE
Confidence            3456778899999999999999998754 5999999999889999999999999999999976543     7776 5799


Q ss_pred             CChhhhhhhheecccC------CCcccccccce
Q psy5076          83 SDLPSLLAFYKVHYLD------TSPLIKPATKT  109 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l~------~~~l~~p~~~~  109 (288)
                      .||.+||+||+.+++.      .+.|..||+++
T Consensus        89 ~sl~eLV~~y~~~~l~~~~~~l~~~L~~P~~~p  121 (122)
T 2lnw_A           89 DSLLELVEYYQCHSLKESFKQLDTTLKYPYKSR  121 (122)
T ss_dssp             SSHHHHHHHHHHSCGGGTCTTCCCCCCBCSSSC
T ss_pred             CCHHHHHHHHhhCcCcccCCCcCeeeCCcCCCC
Confidence            9999999999999763      46788998863

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}

Probab=99.91  E-value=3.1e-24  Score=162.81  Aligned_cols=97  Identities=33%  Similarity=0.598  Sum_probs=84.9

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSD   84 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~s   84 (288)
                      ...++.++||||.|+|++||++|+   .+|+||||+|++.+|.|+|||+.++.|+||+|...++    . |.+++..|+|
T Consensus        11 ~~~~~~~~WyhG~isR~eAe~lL~---~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~g----~-y~~~~~~F~s   82 (116)
T 2kk6_A           11 MKPLAEQDWYHGAIPRIEAQELLK---KQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDN----M-YRFEGTGFSN   82 (116)
T ss_dssp             CCCTTTCTTEEESCCHHHHHHTCC---STTCEEEEECTTCTTCEEEEEEETTEEEEEEEEEETT----E-EESSSCEESC
T ss_pred             ccccccCCCccCCCCHHHHHHHhc---cCCcEEEEECCCCCCcEEEEEEECCeEEEEEEEecCC----E-EEECCCEeCC
Confidence            356778899999999999999997   3599999999988999999999999999999997443    3 8888899999


Q ss_pred             hhhhhhhheecccC-----CCcccccccce
Q psy5076          85 LPSLLAFYKVHYLD-----TSPLIKPATKT  109 (288)
Q Consensus        85 l~~LV~~y~~~~l~-----~~~l~~p~~~~  109 (288)
                      |.+||+||+.+++.     ++.|+.||+++
T Consensus        83 l~eLV~~y~~~~~~i~~~~~~~L~~Pv~r~  112 (116)
T 2kk6_A           83 IPQLIDHHYTTKQVITKKSGVVLLNPIPKD  112 (116)
T ss_dssp             HHHHHHHHHHTTCCSCTTTTCCCCSCCCCC
T ss_pred             HHHHHHHHhhCCCCccCCCCCeECcccCCC
Confidence            99999999998653     46799999873

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B

Probab=99.91  E-value=2.4e-24  Score=164.52  Aligned_cols=99  Identities=25%  Similarity=0.471  Sum_probs=84.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeC------CeEEEEEEEe--ecCCCcceEEee
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN------NKVSHYIINK--ITNTEQQTCYKI   77 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~------~~v~h~~I~~--~~~~~~~~~~~~   77 (288)
                      +.++.++||||.|+|++||.+|+....+|+||||+| +.+|.|+|||+..      +.|+||+|..  ...+   . |++
T Consensus         4 ~~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~~~g---~-~~~   78 (118)
T 3s9k_A            4 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS-RTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPK---R-YYV   78 (118)
T ss_dssp             -CGGGSTTBCTTCCHHHHHHHHHHHCCTTCEEEEEC-SSTTCEEEEEEECCSCSSSCEEEEEEEEECSCSSC---C-EEE
T ss_pred             cccccCceecCCCCHHHHHHHHHhcCCCCeEEEEee-CCCCCEEEEEEecccccCCCceEEEEEeEEECCCC---C-EEE
Confidence            567888999999999999999987555699999999 7789999999996      8999999953  3333   4 666


Q ss_pred             C-CcccCChhhhhhhheecccC-CCcccccccce
Q psy5076          78 G-DKTFSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        78 ~-~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      . ...|.||.+||+||+.++++ ++.|..||+++
T Consensus        79 ~~~~~F~sl~~LV~~y~~~~~~l~~~L~~Pv~~~  112 (118)
T 3s9k_A           79 AEKYVFDSIPLLIQYHQYNGGGLVTRLRYPVCGS  112 (118)
T ss_dssp             ECSCCCSCHHHHHHHHHHCCTTSSSCCCCCCCCS
T ss_pred             CCCcccCCHHHHHHHheeCCCCCccCCCCcCCCC
Confidence            5 56999999999999999877 78999999974

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*

Probab=99.91  E-value=3.3e-24  Score=158.69  Aligned_cols=90  Identities=22%  Similarity=0.538  Sum_probs=78.7

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccC
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFS   83 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~   83 (288)
                      ++..++.++||||.|+|++||++|+.. .+|+||||.|++.+|.|+|||+.++.|+||+|.+...+   . |++.+..|+
T Consensus         2 nyi~l~~~~Wyhg~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~F~   76 (100)
T 1r1p_A            2 SFIDIEFPEWFHEGLSRHQAENLLMGK-DIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKG---N-YFLWTEKFP   76 (100)
T ss_dssp             ----CTTTTTSCTTCCHHHHHHHHHTS-CTTBEEEEECSSSTTCEEEEEECSSSEEEEECEECTTC---C-EESSSCEES
T ss_pred             CccEeccCCccccCCCHHHHHHHhcCC-CCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEEcCCC---C-EEEeCCEeC
Confidence            566788999999999999999999876 45999999999889999999999999999999986544   4 888889999


Q ss_pred             ChhhhhhhheecccC
Q psy5076          84 DLPSLLAFYKVHYLD   98 (288)
Q Consensus        84 sl~~LV~~y~~~~l~   98 (288)
                      ||.+||+||+.+++.
T Consensus        77 sl~~LV~~y~~~~l~   91 (100)
T 1r1p_A           77 SLNKLVDYYRTTSIS   91 (100)
T ss_dssp             SHHHHHHHHTTSCSS
T ss_pred             CHHHHHHHHHhCCCC
Confidence            999999999999875

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus}

Probab=99.90  E-value=7.2e-24  Score=166.00  Aligned_cols=103  Identities=24%  Similarity=0.450  Sum_probs=86.3

Q ss_pred             CCCCCCCccccCC-CHHHHHHHHcC-----CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-
Q psy5076           6 DPHDRNSWYFGMM-TRQEAQAILLS-----EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-   78 (288)
Q Consensus         6 ~~~~~~~Wy~g~i-sr~~ae~lL~~-----~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-   78 (288)
                      +.++.++||||.| +|++||++|+.     ...+|+||||+|++..|.|+|||+.++.|+||+|.....+.... |++. 
T Consensus        17 ~~~~~~~WyhG~i~sR~eAe~lL~~~c~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~gg~~~-~~l~~   95 (138)
T 2dx0_A           17 ELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMK-YYLTD   95 (138)
T ss_dssp             GTTSCCTTBCTTCCCHHHHHHHHHHHHTTTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEEEETTEEE-EESST
T ss_pred             ccccCCCcccCCCCCHHHHHHHHHhhccccCCCCCEEEEEeCCCCCCCeEEEEEECCeEEEEEEEEecCCCceE-EEeCC
Confidence            4688899999999 89999999985     35669999999998899999999999999999999875321113 7765 


Q ss_pred             CcccCChhhhhhhheecccC----CCcccccccce
Q psy5076          79 DKTFSDLPSLLAFYKVHYLD----TSPLIKPATKT  109 (288)
Q Consensus        79 ~~~F~sl~~LV~~y~~~~l~----~~~l~~p~~~~  109 (288)
                      +..|.||.+||+||+.+++.    .+.|+.||+++
T Consensus        96 ~~~F~sl~eLI~~y~~~~l~~~gl~~~L~~Pv~~~  130 (138)
T 2dx0_A           96 NLTFNSIYALIQHYREAHLRCAEFELRLTDPVPNP  130 (138)
T ss_dssp             TSCBSSHHHHHHHTTTSCCCCGGGSSCCCCBCC--
T ss_pred             CCcCCCHHHHHHHHhhCCCCCCCcccccCccCCCC
Confidence            68999999999999999873    57899999874

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A

Probab=99.90  E-value=6.2e-24  Score=164.73  Aligned_cols=97  Identities=28%  Similarity=0.460  Sum_probs=84.6

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeC---------------CeEEEEEEEeecCC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN---------------NKVSHYIINKITNT   69 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~---------------~~v~h~~I~~~~~~   69 (288)
                      ...++.++||||.|+|++||++|+... +|+||||+|++.+|.|+|||+..               +.|+||+|...+.+
T Consensus        14 ~~~~~~~~Wyhg~isR~eAe~lL~~~~-~G~FLVR~S~s~~g~y~LSv~~~~~~~~~~~~~g~~~~~~v~H~~I~~~~~g   92 (131)
T 2kno_A           14 RGSDTSKFWYKPHLSRDQAIALLKDKD-PGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKG   92 (131)
T ss_dssp             CCCCCHHHHBCTTCCHHHHHHHHTTSC-TTBEEEEECSSSTTEEEEEEECSCCSSSSSSCCSCHHHHHEEEEEEECCSSC
T ss_pred             ccccccCCceecCCCHHHHHHHhcCCC-CCeEEEecCCCCCCCEEEEEEeCCCCcccccccccccCCceEEEEEEECCCC
Confidence            346677799999999999999997654 59999999998899999999986               38999999987655


Q ss_pred             CcceEEee----CCcccCChhhhhhhheecccC-CCccccccc
Q psy5076          70 EQQTCYKI----GDKTFSDLPSLLAFYKVHYLD-TSPLIKPAT  107 (288)
Q Consensus        70 ~~~~~~~~----~~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~  107 (288)
                           |+|    .+..|+||.+||+||+.++++ +|.|..||.
T Consensus        93 -----~~l~g~~~~~~F~SL~eLV~~y~~~~~~L~~~L~~P~~  130 (131)
T 2kno_A           93 -----VKIKGCPSEPYFGSLSALVSQHSISPISLPCCLRIPSK  130 (131)
T ss_dssp             -----CCEETCSSCCCCCSHHHHHHTTTTCCSSCSSCCBCSSC
T ss_pred             -----CEEecCCCCCccCCHHHHHHHHhhCCCCCCeECCCcCC
Confidence                 787    467899999999999999988 788999874

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=5.3e-24  Score=164.10  Aligned_cols=100  Identities=27%  Similarity=0.484  Sum_probs=85.9

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee------CCeEEEEEEEeecCCCcceEEeeC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE------NNKVSHYIINKITNTEQQTCYKIG   78 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~------~~~v~h~~I~~~~~~~~~~~~~~~   78 (288)
                      .+.++.++||||.|+|++||++|+....+|+||||+| +..|.|+|||+.      ++.|+||+|.+...+   . |++.
T Consensus        10 ~~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g---~-~~l~   84 (125)
T 2dm0_A           10 ITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDS-RHLGSYTISVFMGARRSTEAAIKHYQIKKNDSG---Q-WYVA   84 (125)
T ss_dssp             SCCCTTSSSBCCSCCHHHHHHHHHHHCSTTCBCEEEE-TTEEEEEEEEECCCSSSSSCCEEEEEEEECTTC---C-EESS
T ss_pred             ccccccCCcccCCCCHHHHHHHHhhcCCCCEEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEEcCCC---C-EEEC
Confidence            4578889999999999999999986545699999999 468999999998      469999999986544   4 7876


Q ss_pred             -CcccCChhhhhhhheecccC-CCcccccccce
Q psy5076          79 -DKTFSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        79 -~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                       +..|.||.+||+||+.++++ ++.|..||++.
T Consensus        85 ~~~~F~sl~eLV~~y~~~~~~l~~~L~~P~~~~  117 (125)
T 2dm0_A           85 ERHAFQSIPELIWYHQHNAAGLMTRLRYPVGLM  117 (125)
T ss_dssp             SSCCCSSHHHHHHHHTTCCCSSSCCCCSBCCSS
T ss_pred             CCCccCCHHHHHHHhhhCCCCCccCCCCccCCC
Confidence             57999999999999999876 78899999873

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*

Probab=99.90  E-value=8e-24  Score=159.63  Aligned_cols=89  Identities=26%  Similarity=0.493  Sum_probs=79.3

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCC--CCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccC
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSE--KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFS   83 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~--~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~   83 (288)
                      ..++.++||||.|+|++||++|+..  ..+|+||||+|++.+|.|+|||+.++.|+||+|.+...+   . |++++..|+
T Consensus         4 ~~l~~~~WyhG~isR~~Ae~lL~~~g~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~F~   79 (111)
T 2hdv_A            4 QPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAG---Q-CRVQHLHFQ   79 (111)
T ss_dssp             CCGGGSTTEEEECCHHHHHHHHHTTGGGGTTEEEEEECSSCTTEEEEEEEETTEEEEEEEEECTTC---C-EEETTEEES
T ss_pred             cccccCCCcCCCCCHHHHHHHHHHcCCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCC---C-EEeCCceeC
Confidence            4567789999999999999999875  256999999999889999999999999999999986544   4 888888999


Q ss_pred             ChhhhhhhheecccC
Q psy5076          84 DLPSLLAFYKVHYLD   98 (288)
Q Consensus        84 sl~~LV~~y~~~~l~   98 (288)
                      ||.+||+||+.+++.
T Consensus        80 sl~~LV~~y~~~~l~   94 (111)
T 2hdv_A           80 SIFDMLEHFRVHPIP   94 (111)
T ss_dssp             SHHHHHHHHTTSCCC
T ss_pred             CHHHHHHHHhhCCcc
Confidence            999999999998875

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A

Probab=99.90  E-value=7.2e-24  Score=162.12  Aligned_cols=97  Identities=28%  Similarity=0.501  Sum_probs=84.7

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCC-CCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCC
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI-LGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSD   84 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~-~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~s   84 (288)
                      .++.++||||.|+|++||++|+.. .+|+||||+|++. +|.|+|||+.++.++||+|...++    . |.+. ...|+|
T Consensus         7 ~l~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~~g~y~LSv~~~~~v~H~~I~~~~g----~-~~l~~~~~F~s   80 (120)
T 2iug_A            7 SLQNAEWYWGDISREEVNEKLRDT-ADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDG----K-YGFSDPLTFSS   80 (120)
T ss_dssp             HHHTCTTBCCSCCHHHHHHHHTTC-CTTEEEEEECSSGGGCSEEEEEEETTEEEEEEEEEETT----E-EESSSSCCBSS
T ss_pred             ccccCCccccCCCHHHHHHHhcCC-CCcEEEEECCCCCCCCcEEEEEEECCEEEEEEEEEcCC----E-EEECCCCccCC
Confidence            456789999999999999999864 4599999999987 899999999999999999998743    3 8886 579999


Q ss_pred             hhhhhhhheecccC------CCcccccccce
Q psy5076          85 LPSLLAFYKVHYLD------TSPLIKPATKT  109 (288)
Q Consensus        85 l~~LV~~y~~~~l~------~~~l~~p~~~~  109 (288)
                      |.+||+||+.+++.      ++.|..||++.
T Consensus        81 l~~LI~~y~~~~~~~~~~~l~~~L~~Pv~r~  111 (120)
T 2iug_A           81 VVELINHYRNESLAQYNPKLDVKLLYPVSKY  111 (120)
T ss_dssp             HHHHHHHHHHSCGGGTCGGGCCCCCEECCTT
T ss_pred             HHHHHHHHHhCccccccCCcceeeCCcCCcC
Confidence            99999999999863      57899999873

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}

Probab=99.90  E-value=6e-24  Score=167.05  Aligned_cols=99  Identities=22%  Similarity=0.331  Sum_probs=83.2

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCC--CCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-----C
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT--ILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-----D   79 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~--~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-----~   79 (288)
                      .++.++||||.|+|++||+||+....+|+||||+|++  ..|.|+|||+.++.|+||+|.+...+   ..|.++     .
T Consensus        19 ~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~~~~l~~~~~~~   95 (141)
T 2eo6_A           19 ELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEAT---KQYALGKKKNGE   95 (141)
T ss_dssp             TTTTCSSEEESCCHHHHHHHHHHHCCTTCBCEEECSTTCSSCSEEEEEEETTEEEEEEECEETTT---TEECSSSCCTTC
T ss_pred             ccCCCCeEecCCCHHHHHHHhhccCCCceEEEEECCCCCCCCCEEEEEEECCEEEEEEEEEeCCC---CEEEEccccCCC
Confidence            5788899999999999999997533469999999996  68999999999999999999875443   227776     4


Q ss_pred             cccCChhhhhhhheecccC----------CCcccccccc
Q psy5076          80 KTFSDLPSLLAFYKVHYLD----------TSPLIKPATK  108 (288)
Q Consensus        80 ~~F~sl~~LV~~y~~~~l~----------~~~l~~p~~~  108 (288)
                      ..|.||.+||+||+.+++.          .+.|++||..
T Consensus        96 ~~F~sl~eLV~~y~~~~~~l~~~~~~~~~~~~L~~Pv~~  134 (141)
T 2eo6_A           96 EYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVKV  134 (141)
T ss_dssp             CCBSSHHHHHHHHHHSCCCCCCSSSCCCCCCCCCCBCCC
T ss_pred             CccCCHHHHHHHHhhCCccceecccCCCCceEeCcCccc
Confidence            7999999999999998875          2467788765

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A

Probab=99.90  E-value=6.4e-24  Score=160.82  Aligned_cols=96  Identities=27%  Similarity=0.497  Sum_probs=83.9

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccC
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFS   83 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~   83 (288)
                      ..+.++.++||||.|+|++||++|+.   +|+||||+|++.. .|+|||+.++.|+||+|...++.     |.+++..|+
T Consensus         9 ~~~~l~~~~WyhG~isR~eAe~lL~~---~G~FLVR~S~~~~-~y~LSv~~~~~v~H~~I~~~~g~-----~~~~~~~F~   79 (114)
T 1wqu_A            9 VQKPLHEQLWYHGAIPRAEVAELLVH---SGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLDNL-----YRLEGEGFP   79 (114)
T ss_dssp             GGSCGGGCTTEEESCCHHHHHTTCCS---TTEEEEEECSSSC-CEEEEEEETTEEEEEECEECSSS-----EESSSCCBS
T ss_pred             cccccccCCcEeeCCCHHHHHHHhcc---CCeEEEEEcCCCC-CEEEEEEECCEEEEEEEEecCCE-----EEECCCCCC
Confidence            44567888999999999999999973   5999999999877 99999999999999999876543     889899999


Q ss_pred             ChhhhhhhheecccC-----CCcccccccc
Q psy5076          84 DLPSLLAFYKVHYLD-----TSPLIKPATK  108 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-----~~~l~~p~~~  108 (288)
                      ||.+||+||+.+.+.     ++.|..||++
T Consensus        80 sl~~LV~~y~~~~~~~~~~~~~~L~~Pv~r  109 (114)
T 1wqu_A           80 SIPLLIDHLLSTQQPLTKKSGVVLHRAVPS  109 (114)
T ss_dssp             SHHHHHHHHHHHCCCSCTTTCCCCCEECCS
T ss_pred             CHHHHHHHHHHCCCCcCCCCCcEECcccCC
Confidence            999999999988542     5778899887

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}

Probab=99.89  E-value=6.6e-24  Score=161.67  Aligned_cols=93  Identities=20%  Similarity=0.342  Sum_probs=79.8

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee----CCeEEEEEEEeecCCCcceEEeeC-Cc
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE----NNKVSHYIINKITNTEQQTCYKIG-DK   80 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~----~~~v~h~~I~~~~~~~~~~~~~~~-~~   80 (288)
                      ..++.++||||.|+|++||++|.....+|+||||+|++.+|.|+|||+.    ++.|+||+|.+.++    . |++. +.
T Consensus        16 r~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~g----~-~~i~~~~   90 (118)
T 2el8_A           16 RRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGP----K-YVIDVEQ   90 (118)
T ss_dssp             CCCSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECCSSSSSEEEEECCCBTTBCCCEEECBCCBTT----B-CCBSSSS
T ss_pred             ccccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCCCCCCceEEEEEEecCCCCcEEEEEEEEcCC----E-EEEeCCC
Confidence            3567789999999999999999754466999999999989999999999    89999999988433    3 8887 57


Q ss_pred             cc--CChhhhhhhheecccC-CCccc
Q psy5076          81 TF--SDLPSLLAFYKVHYLD-TSPLI  103 (288)
Q Consensus        81 ~F--~sl~~LV~~y~~~~l~-~~~l~  103 (288)
                      .|  +||.+||+||+.++++ ++.|.
T Consensus        91 ~F~~~sL~eLV~~y~~~~~gl~~~L~  116 (118)
T 2el8_A           91 PFSCTSLDAVVNYFVSHTKKALVPFL  116 (118)
T ss_dssp             CCCCSSHHHHHHHHHHHSSSCCCBCC
T ss_pred             eECCCCHHHHHHHHhhCCCCCeEeee
Confidence            89  9999999999999987 55554

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*

Probab=99.89  E-value=2.6e-23  Score=162.63  Aligned_cols=96  Identities=30%  Similarity=0.513  Sum_probs=83.3

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChh
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLP   86 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~   86 (288)
                      ++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|.. ..+   . |+|. +..|.||.
T Consensus        23 ~~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~-~~g---~-~~l~~~~~F~sl~   96 (138)
T 2crh_A           23 LSVHLWYAGPMERAGAESILANR-SDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMT-AEG---L-YRITEKKAFRGLT   96 (138)
T ss_dssp             GGGSSSBCCSCCHHHHHHHTTTS-CTTEEEEECCSSTTCCCEEEEEETTEEEEEECEE-ETT---E-EESSTTCCBSSHH
T ss_pred             CCcCCcccCCCCHHHHHHHhcCC-CCCEEEEEECCCCCCCEEEEEEECCeEEEEEEEe-CCC---E-EEECCCCccCCHH
Confidence            45679999999999999999875 4599999999988899999999999999999964 333   4 8887 58999999


Q ss_pred             hhhhhheecccC------CCcccccccce
Q psy5076          87 SLLAFYKVHYLD------TSPLIKPATKT  109 (288)
Q Consensus        87 ~LV~~y~~~~l~------~~~l~~p~~~~  109 (288)
                      +||+||+.+++.      ++.|+.||+++
T Consensus        97 eLV~~y~~~~l~~~~~~l~~~L~~Pv~~~  125 (138)
T 2crh_A           97 ELVEFYQQNSLKDCFKSLDTTLQFPFKEP  125 (138)
T ss_dssp             HHHHHHTTSCGGGTCTTCCCCCCEESSCC
T ss_pred             HHHHHHHhCccccccCCcCcccCCccCCC
Confidence            999999999863      47899999874

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}

Probab=99.88  E-value=3.8e-23  Score=165.72  Aligned_cols=97  Identities=22%  Similarity=0.342  Sum_probs=84.6

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC------
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD------   79 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~------   79 (288)
                      ..++.++||||.|+|++||++|+.. .+|+||||+|++..|.|+|||+.++.|+||+|...++    . |++.+      
T Consensus        18 ~~L~~~~WyhG~IsR~eAe~lL~~~-~~GtFLVR~S~s~~g~y~LSvr~~~~v~H~rI~~~~g----~-f~l~~~~~~~~   91 (164)
T 2bbu_A           18 RKLQESGFYWSAVTGGEANLLLSAE-PAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGG----S-FSLQSDPRSTQ   91 (164)
T ss_dssp             HHHHHTSCCCTTSCHHHHHHHHHHS-STTCCEEEECSTTSCCEEEEECCTTCCEEEECEEETT----E-EESSSCCCCCS
T ss_pred             hhhccCCccCCCCCHHHHHHHhcCC-CCCCEEEEECCCCCCCEEEEEEECCceEEEEEEeCCC----e-EEEecCccccc
Confidence            3456689999999999999999764 4599999999988999999999999999999997543    3 88874      


Q ss_pred             --cccCChhhhhhhheecccC---CCcccccccc
Q psy5076          80 --KTFSDLPSLLAFYKVHYLD---TSPLIKPATK  108 (288)
Q Consensus        80 --~~F~sl~~LV~~y~~~~l~---~~~l~~p~~~  108 (288)
                        ..|+||.+||+||+.+++.   +|.|..|++.
T Consensus        92 ~~~~F~SL~eLV~~Y~~~~~~~~~~~~l~ep~~~  125 (164)
T 2bbu_A           92 PVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSE  125 (164)
T ss_dssp             SCTTCCHHHHHHHHHSCCCSCSCCSSSCSSCCSS
T ss_pred             CCCccCCHHHHHHHHhhCCCCCCccccccCCCcc
Confidence              6999999999999999885   6888888876

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.87  E-value=1.5e-22  Score=163.96  Aligned_cols=97  Identities=26%  Similarity=0.406  Sum_probs=83.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC------
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD------   79 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~------   79 (288)
                      ..++.++||||.|+|++||++|+. ..+|+||||+|++..|.|+|||+.++.++||+|...++    . |.+++      
T Consensus        12 ~~l~~~~WyhG~isR~eAe~lL~~-~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~rI~~~~g----~-~~l~~~~~~~~   85 (169)
T 2c9w_A           12 RELGQTGWYWGSMTVNEAKEKLKE-APEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDG----K-FRLDSIICVKS   85 (169)
T ss_dssp             HHHHHTSCBCTTCCHHHHHHHHTT-SCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEETT----E-EEECTTTTTGG
T ss_pred             HhcccCCccccCCCHHHHHHHcCC-CCCcEEEEecCCCCCCeEEEEEEECCeeEEEEEEEeCC----E-EEEccccCccc
Confidence            345678999999999999999975 45599999999988999999999999999999998643    3 88875      


Q ss_pred             --cccCChhhhhhhheecccC-------------CCcccccccc
Q psy5076          80 --KTFSDLPSLLAFYKVHYLD-------------TSPLIKPATK  108 (288)
Q Consensus        80 --~~F~sl~~LV~~y~~~~l~-------------~~~l~~p~~~  108 (288)
                        ..|+||.+||+||+.++++             .+.|+.|+.+
T Consensus        86 ~~~~F~sl~eLI~~y~~~~~~~~~~~~~~~~~~~~~~L~~P~~~  129 (169)
T 2c9w_A           86 KLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLYT  129 (169)
T ss_dssp             GCCCBSCHHHHHHHHHHHTC--------------CCCCCCBCCS
T ss_pred             cCCCCCCHHHHHHHHHhCcCCCcccccCCCCcCccceecCcccc
Confidence              7899999999999988763             3567888876

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.87  E-value=3.6e-22  Score=162.89  Aligned_cols=100  Identities=27%  Similarity=0.553  Sum_probs=87.0

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEeCCCCCCceEEEEee-----CCeEEEEEEEeecCCCcceEEeeC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG   78 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~-~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~   78 (288)
                      ...++.++||||.|+|++||++|+.. ..+|+||||+|++..|.|+|||+.     ++.|+||+|.+...+   . |++.
T Consensus        68 ~~~l~~~~w~~g~isr~~ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~v~H~~I~~~~~g---~-~~~~  143 (175)
T 4d8k_A           68 ANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG---G-FYIS  143 (175)
T ss_dssp             TTCSTTCTTBCSSCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECTTSCEEEEEEEEEECSSS---C-EESS
T ss_pred             cccccccceecCcccHHHHHHHHhcCCCCCCEEEEEECCCCCCeEEEEEEeCcccCCCceEEEEEEECCCC---C-EEEC
Confidence            45578889999999999999999863 456999999999889999999998     779999999986544   4 7787


Q ss_pred             C-cccCChhhhhhhheecccC-CCcccccccc
Q psy5076          79 D-KTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        79 ~-~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      + ..|.||.+||+||+.++++ ++.|..||++
T Consensus       144 ~~~~F~sl~~LV~~y~~~~~gl~~~L~~Pc~~  175 (175)
T 4d8k_A          144 PRITFPGLHELVRHYTNASDGLCTRLSRPCQT  175 (175)
T ss_dssp             TTSEESSHHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             CCCccCCHHHHHHHHhhCCCCCcccCCCcCCC
Confidence            4 7999999999999999877 7899999974

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.87  E-value=3.7e-21  Score=162.17  Aligned_cols=150  Identities=26%  Similarity=0.489  Sum_probs=103.5

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeEecccCC-----cccc----cccCCCC
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSEGM-----SILS----LRNLHLD  181 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~~~~~~~-----~~~~----~~~~~~~  181 (288)
                      .++|+|+|.++..+||+|++||+|.|+... +++||.++ .+|+.||||++||+......     .+..    +....+.
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~~P~~yv~~~~~~w~~g~isr~~ae~lL~~~~~~   80 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE-LNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHD   80 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEE-SSSCEEEEEGGGEECCCCSSBCTTCCHHHHHHHHHTCSST
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeec-cCCccceECCcccccccchhhcccCCHHHHHHHHhccCCC
Confidence            478999999999999999999999999876 67899998 78999999999998765431     1100    1000000


Q ss_pred             C-----CCCCCCCC-----------------------------------------------CCcccccccc--CCCCCeE
Q psy5076         182 S-----SSHHVPQQ-----------------------------------------------QTTPVRKTHL--EVKLPAF  207 (288)
Q Consensus       182 ~-----~~~~~~~~-----------------------------------------------~~~~~~~~~~--~~~~~~~  207 (288)
                      .     .+...++.                                               ....+.....  ......+
T Consensus        81 G~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~~~~~~~~~~~~~l~~~~~~~~~~~~  160 (217)
T 1gri_A           81 GAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTY  160 (217)
T ss_dssp             TCEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSSCEESSSCEESSHHHHHHHHHHSCSSSSTTCCCCBCCCCCCCCCE
T ss_pred             ceEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhhhccccccccceeecccccCCCCceE
Confidence            0     00000100                                               0000000000  0012458


Q ss_pred             EEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       208 ~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      ++|+|+|  .++.++||+|.+||+|.|+++.++|||.|+++|+.||||++||+.++.
T Consensus       161 ~~al~~y--~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          161 VQALFDF--DPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             EEESSCC--CCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEECC
T ss_pred             EEecCCc--cCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEECCC
Confidence            9999999  567778999999999999999999999999999999999999999864

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}

Probab=99.86  E-value=1.7e-22  Score=158.74  Aligned_cols=94  Identities=21%  Similarity=0.250  Sum_probs=79.3

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC----Cccc
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG----DKTF   82 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~----~~~F   82 (288)
                      .++.++||||.|+|++||++|+.. .+|+||||+|++..+.|+||++.++.++||+|...++    . |++.    +..|
T Consensus        20 ~l~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~g----~-~~l~~~~~~~~F   93 (141)
T 2vif_A           20 KLAKQGWYWGPITRWEAEGKLANV-PDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNG----R-FSFYEQPDVEGH   93 (141)
T ss_dssp             HHHHHTCBCCSCCHHHHHHHTTTS-CTTCEEEEECSSTTCSEEEEEEETTEEEEEEEEEETT----E-EEETTCCSCCCB
T ss_pred             hhccCCCcccCCCHHHHHHHhcCC-CCceEEEEecCCCCCCEEEEEEECCEEEEEEEEEECC----E-EEEeecCCCCcc
Confidence            345679999999999999999765 4599999999988899999999999999999998743    3 8887    5799


Q ss_pred             CChhhhhhhheeccc-C-CCcccccc
Q psy5076          83 SDLPSLLAFYKVHYL-D-TSPLIKPA  106 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l-~-~~~l~~p~  106 (288)
                      .||.+||+||+.+++ + .|.|..+.
T Consensus        94 ~sl~eLI~~y~~~~~~gl~c~l~~~~  119 (141)
T 2vif_A           94 TSIVDLIEHSIGDSENGAFCYSRSRL  119 (141)
T ss_dssp             SSHHHHHHHHHHHHHHTCCEEESCCS
T ss_pred             CCHHHHHHHHhhCCCCCcceeccccC
Confidence            999999999999885 3 44444443

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=99.86  E-value=3.3e-22  Score=171.29  Aligned_cols=91  Identities=29%  Similarity=0.540  Sum_probs=76.9

Q ss_pred             CCCCCccccCC-----CHHHHHHHHcC-----CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEee
Q psy5076           8 HDRNSWYFGMM-----TRQEAQAILLS-----EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI   77 (288)
Q Consensus         8 ~~~~~Wy~g~i-----sr~~ae~lL~~-----~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~   77 (288)
                      |.+++||||.|     +|++||+||++     ...||+||||+|++.+|.|+|||+.++.|+||+|...+.+.... |++
T Consensus         1 H~~e~WfhG~i~~~~~sR~~AE~lL~~~~~~~~~~dG~FLVR~S~s~~G~y~LSv~~~~~v~H~~I~~~~~~g~~~-~~~   79 (246)
T 4fbn_A            1 HSNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPK-FFL   79 (246)
T ss_dssp             --CCTTBCCCCSCC-CHHHHHHHHHHHHHHHHTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEECGGGCCE-EEE
T ss_pred             CCCCCCcCCccccccCCHHHHHHHHHHhhhccCCCCCEEEEEcCCCCCCCEEEEEEECCEEEEEEEEEECCCCcee-EEe
Confidence            56889999999     79999999963     45679999999999999999999999999999998876543334 555


Q ss_pred             C-CcccCChhhhhhhheecccCC
Q psy5076          78 G-DKTFSDLPSLLAFYKVHYLDT   99 (288)
Q Consensus        78 ~-~~~F~sl~~LV~~y~~~~l~~   99 (288)
                      . +..|.||.+||+||++++|.+
T Consensus        80 ~~~~~F~sl~~LV~~y~~~~l~~  102 (246)
T 4fbn_A           80 TDNLVFDSLYDLITHYQQVPLRC  102 (246)
T ss_dssp             ETTEEESSHHHHHHHHHHSCEEC
T ss_pred             cCCcccCCHHHHHHhHhhccccc
Confidence            4 679999999999999998853

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.86  E-value=2.1e-22  Score=164.52  Aligned_cols=97  Identities=23%  Similarity=0.331  Sum_probs=83.3

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC-----c
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-----K   80 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-----~   80 (288)
                      ..++.++||||.|+|++||++|... .+|+||||+|++..+.|+||++.++.|+||+|...+++     |.+.+     .
T Consensus        29 ~~l~~~~WYhG~isR~eAE~lL~~~-~dGtFLVR~S~~~~~~lsLSvr~~~~v~H~rI~~~~g~-----f~l~~~~~~~~  102 (187)
T 2izv_A           29 LQINNNPCYWGVMDKYAAEALLEGK-PEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHN-----FSFDAHDPCVF  102 (187)
T ss_dssp             HHHHHCTTEEEECCHHHHHHHHTTC-CTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEETTE-----EESCTTCTTSC
T ss_pred             hhcccCCccccCCCHHHHHHHhcCC-CCCcEEEEECCCCCceEEEEEeeCCeEEEEEEEECCCE-----EEEeccCCCcc
Confidence            3456689999999999999999765 45999999999877789999999999999999987543     88874     2


Q ss_pred             ccCChhhhhhhheecccC---CCcccccccc
Q psy5076          81 TFSDLPSLLAFYKVHYLD---TSPLIKPATK  108 (288)
Q Consensus        81 ~F~sl~~LV~~y~~~~l~---~~~l~~p~~~  108 (288)
                      .|+||.+||+||+.++++   ...|+.||.+
T Consensus       103 ~F~SL~eLV~hY~~~~~~~~~~~~L~~Pv~r  133 (187)
T 2izv_A          103 HSPDITGLLEHYKDPSACMFFEPLLSTPLIR  133 (187)
T ss_dssp             CBSSHHHHHHHTCCGGGCCTTSCCCCEECCC
T ss_pred             ccCCHHHHHHHHHhccccccccccccccccc
Confidence            799999999999999876   2578889887

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=99.86  E-value=1.5e-21  Score=168.41  Aligned_cols=100  Identities=29%  Similarity=0.489  Sum_probs=87.7

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccC
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (288)
                      |+.+.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.++.|+||+|.....+   . |++. +..|.
T Consensus         1 d~~~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~~F~   76 (254)
T 2oq1_A            1 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNG---T-YAIAGGKAHC   76 (254)
T ss_dssp             CTTTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS---C-EEETTSCCBS
T ss_pred             CccccCCccCCCCCHHHHHHHHhccCCCCcEEEEEeCCCCCCCEEEEEEECCeEEEEEEEEeCCC---C-EEeCCCCccC
Confidence            567888999999999999999964 4466999999999988999999999999999999985443   3 8886 68999


Q ss_pred             ChhhhhhhheecccC-CCcccccccce
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      ||.+||+||+.++.+ ++.|..||+++
T Consensus        77 sl~~LV~~y~~~~~~l~~~L~~p~~~~  103 (254)
T 2oq1_A           77 GPAELCEFYSRDPDGLPCNLRKPCNRP  103 (254)
T ss_dssp             SHHHHHHHHHHCCTTSSSCCCSBCCCC
T ss_pred             CHHHHHHHHHhCCCCcccccccccCCC
Confidence            999999999999876 78899999873

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=99.86  E-value=8.1e-22  Score=168.83  Aligned_cols=99  Identities=27%  Similarity=0.554  Sum_probs=87.6

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSD   84 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~s   84 (288)
                      .++++.++||||.|+|++||.+|.....+|+||||.|+. .|.|+||++.+++|+||+|.....    . |.+++..|+|
T Consensus       116 ~~~~~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~s~~-~g~y~Lsv~~~~~v~H~~I~~~~~----~-~~~~~~~F~s  189 (246)
T 4fbn_A          116 TNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNE-PNSYAISFRAEGKIKHCRVQQEGQ----T-VMLGNSEFDS  189 (246)
T ss_dssp             SCGGGGSTTEESSCCHHHHHHHHHTSCCTTEEEEEECSS-TTEEEEEEEETTEEEEEEEEEETT----E-EEETTEEESC
T ss_pred             cCCcccCCeeecCccHHHHHHHHhhCCCCCeEEEEecCC-CCCEEEEEEeCCCeEEEEEEeCCC----E-EEeCCCccCC
Confidence            456788999999999999999998766679999999864 799999999999999999987643    2 8888889999


Q ss_pred             hhhhhhhheecccC-CCcccccccce
Q psy5076          85 LPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        85 l~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      |.+||+||+++++. .+.|++||++.
T Consensus       190 L~~Lv~~y~~~p~~~~~~L~~Pv~~~  215 (246)
T 4fbn_A          190 LVDLISYYEKHPLYRKMKLRYPINEE  215 (246)
T ss_dssp             HHHHHHHHHHSCSBTTBCCCEECSHH
T ss_pred             HHHHHHHhCcCCCCCCcCCCCcCCCc
Confidence            99999999999987 78899999873

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}

Probab=99.86  E-value=6.9e-22  Score=156.93  Aligned_cols=85  Identities=22%  Similarity=0.366  Sum_probs=74.9

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC-------
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-------   79 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-------   79 (288)
                      .++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|...++.     |++.+       
T Consensus        30 ~l~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~rI~~~~g~-----f~l~~~~~~~~~  103 (152)
T 2hmh_A           30 KLQESGFYWSAVTGGEANLLLSAE-PAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGGS-----FSLQSDPRSTQP  103 (152)
T ss_dssp             HHHHTSSEETTCCHHHHHHHHHTS-CTTEEEEEECCSTTCSEEEEEEETTEEEEEEEECGGGC-----BEECBCTTCSSC
T ss_pred             hhccCCCcCCCCCHHHHHHHhcCC-CCCcEEEEeCCCCCCcEEEEEEcCCceEEEEEEecCCE-----EEEecccccccc
Confidence            456679999999999999999865 45999999999889999999999999999999984433     88864       


Q ss_pred             -cccCChhhhhhhheeccc
Q psy5076          80 -KTFSDLPSLLAFYKVHYL   97 (288)
Q Consensus        80 -~~F~sl~~LV~~y~~~~l   97 (288)
                       ..|+||.+||+||+.++.
T Consensus       104 ~~~F~SL~eLV~~Y~~~~~  122 (152)
T 2hmh_A          104 VPRFDXVLKLVHHYMPPQA  122 (152)
T ss_dssp             CCCBSSHHHHHHHTCCCCC
T ss_pred             cCccCCHHHHHHHHhhCcc
Confidence             799999999999999874

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=99.85  E-value=1.7e-21  Score=167.98  Aligned_cols=98  Identities=29%  Similarity=0.471  Sum_probs=86.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccC
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (288)
                      ..++.++||||.|+|++||++|+.. ..+|+||||+| +.+|.|+|||+.++.|+||+|.+...+   . |++. +..|+
T Consensus       154 ~~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~~g~~~LSv~~~~~v~H~~I~~~~~g---~-~~~~~~~~F~  228 (254)
T 2oq1_A          154 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR-KEQGTYALSLIYGKTVYHYLISQDKAG---K-YCIPEGTKFD  228 (254)
T ss_dssp             HGGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEEC-SSTTEEEEEEEETTEEEEEEEEECTTS---C-EESTTSCCBS
T ss_pred             cccCCCcccccCCCHHHHHHHHHhcCCCCceEEEEec-CCCCCEEEEEEECCeEEEEEEEEcCCC---C-EEECCCceEC
Confidence            3567789999999999999999864 46699999999 778999999999999999999986544   4 8876 68999


Q ss_pred             ChhhhhhhheecccC-CCcccccccc
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ||.+||+||+.++++ ++.|+.||++
T Consensus       229 sl~~LV~~y~~~~~~l~~~L~~p~~r  254 (254)
T 2oq1_A          229 TLWQLVEYLKLKADGLIYCLKEACPN  254 (254)
T ss_dssp             SHHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             CHHHHHHHHHhCCCCCCeeCCccCcC
Confidence            999999999999887 7889999974

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=99.85  E-value=2e-21  Score=167.54  Aligned_cols=98  Identities=33%  Similarity=0.567  Sum_probs=86.8

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccC
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (288)
                      ..++.++||||.|+|++||++|+.. ..+|+||||+| +.+|.|+|||+.++.|+||+|.....+   . |++. +..|+
T Consensus       153 ~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~~g~~~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~~F~  227 (254)
T 1a81_A          153 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRAR-DNNGSYALCLLHEGKVLHYRIDKDKTG---K-LSIPEGKKFD  227 (254)
T ss_dssp             TSGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEEC-SSSSCEEEEEEETTEEEEEEEEECTTS---C-EECTTSCCBS
T ss_pred             cccccCCccccCCCHHHHHHHHHhcCCCCceEEEEec-CCCCCEEEEEEECCEEEEEEEEEcCCC---C-EEecCCcccC
Confidence            4677889999999999999999864 46699999999 778999999999999999999986544   4 8875 68999


Q ss_pred             ChhhhhhhheecccC-CCcccccccc
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ||.+||+||+.++++ ++.|+.||++
T Consensus       228 sl~~LV~~y~~~~~~l~~~L~~p~~r  253 (254)
T 1a81_A          228 TLWQLVEHYSYKADGLLRVLTVPCQK  253 (254)
T ss_dssp             CHHHHHHHHTTCCTTSSSCCCCBCCC
T ss_pred             CHHHHHHHHHHCCCCCCeecCCcCCC
Confidence            999999999999887 7889999986

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=99.84  E-value=6.7e-21  Score=164.27  Aligned_cols=97  Identities=29%  Similarity=0.499  Sum_probs=85.3

Q ss_pred             CCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChh
Q psy5076           9 DRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLP   86 (288)
Q Consensus         9 ~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~   86 (288)
                      +.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.++.|+||+|.....+   . |++. +..|.||.
T Consensus         3 ~~~~Wy~g~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~~F~sl~   78 (254)
T 1a81_A            3 NHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNG---T-YAIAGGRTHASPA   78 (254)
T ss_dssp             TSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS---C-EEETTSCCBSSHH
T ss_pred             ccCccccCCCCHHHHHHHHhcCCCCCcEEEEEecCCCCCCEEEEEEECCeeEEEEEEEcCCC---C-EEeCCCCCcCCHH
Confidence            567999999999999999974 3466999999999989999999999999999999985444   4 8886 68999999


Q ss_pred             hhhhhheecccC-CCcccccccce
Q psy5076          87 SLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        87 ~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      +||+||+.++.+ ++.|..||+++
T Consensus        79 eLv~~y~~~~~~l~~~L~~p~~~~  102 (254)
T 1a81_A           79 DLCHYHSQESDGLVCLLKKPFNRP  102 (254)
T ss_dssp             HHHHHHTTCCTTSSSCCCEECCCC
T ss_pred             HHHHHHHhCCCCceECCccccCCC
Confidence            999999998876 78899998873

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=99.83  E-value=7.6e-21  Score=165.89  Aligned_cols=98  Identities=24%  Similarity=0.512  Sum_probs=84.1

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC--Cccc
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTF   82 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~~F   82 (288)
                      ...++.++||||.|+|++|+.+|... .+|+||||.| +.+|.|+|||+.++.|+||+|...+.+     |++.  ...|
T Consensus       188 ~~~l~~~~WyhG~IsR~eAE~lL~~~-~~GtFLVR~S-s~~g~y~LSv~~~~~V~H~rI~~~~~g-----~~~~~~~~~F  260 (302)
T 2y3a_B          188 LPHHEERTWYVGKINRTQAEEMLSGK-RDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATG-----FGFAEPYNLY  260 (302)
T ss_dssp             CGGGSSTTTBCCSCCHHHHHHHHTTS-CTTBEEBCCC-SSTTCEEEEEECSSSEEEEEEEEETTE-----EESBTTBCCC
T ss_pred             cccccCCCccCCCCCHHHHHHHhcCC-CCCcEEEEec-cCCCceEEEEEeCCeeEEEEEEECCCc-----eEEeCCCCCC
Confidence            45677889999999999999999654 5599999999 778999999999999999999987665     5554  3689


Q ss_pred             CChhhhhhhheecccC------CCcccccccce
Q psy5076          83 SDLPSLLAFYKVHYLD------TSPLIKPATKT  109 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l~------~~~l~~p~~~~  109 (288)
                      +||.+||+||+.+++.      ++.|..||+++
T Consensus       261 ~SL~eLV~~Y~~~~L~~~~~gl~~~L~~Pv~~~  293 (302)
T 2y3a_B          261 GSLKELVLHYQHASLVQHNDALTVTLAHPVRAP  293 (302)
T ss_dssp             SSHHHHHHTTSSSCSTTTCSSCCCCCSBCSCCC
T ss_pred             CCHHHHHHHHHhCCccccCCCCceeeCCccCCC
Confidence            9999999999997753      57899999874

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=99.82  E-value=1.6e-20  Score=168.79  Aligned_cols=100  Identities=28%  Similarity=0.485  Sum_probs=85.7

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCC-CCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC-cc
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI-LGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KT   81 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~-~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-~~   81 (288)
                      +-.+++.++||||.|+|++||.+|... .+|+||||+|++. +|.|+|||+.++.|+||+|...++.     |++.+ ..
T Consensus         3 ~s~sL~~~~WYhG~IsR~eAE~lL~~~-~dG~FLVR~S~s~~~g~y~LSvr~~~~v~H~rI~~~~g~-----y~l~~~~~   76 (373)
T 3hhm_B            3 NNMSLQNAEWYWGDISREEVNEKLRDT-ADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGK-----YGFSDPLT   76 (373)
T ss_dssp             --CGGGGCTTEEESCCHHHHHHHTTTC-CTTEEEEEECSCC--CCEEEEEEETTEEEEEEECCSSSC-----BCSSSSCC
T ss_pred             CCCCcccCCccCCCCCHHHHHHHhcCC-CCCCEEEeccCCCCCCCEEEEEEECCeeEEEEEEecCCe-----EEeCCCCC
Confidence            345678889999999999999999865 5599999999987 8999999999999999999976544     88874 79


Q ss_pred             cCChhhhhhhheecccC------CCcccccccce
Q psy5076          82 FSDLPSLLAFYKVHYLD------TSPLIKPATKT  109 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~------~~~l~~p~~~~  109 (288)
                      |+||.+||+||+.+++.      ++.|..||++.
T Consensus        77 F~SL~eLV~~Y~~~~l~~~~~gl~~~L~~Pv~r~  110 (373)
T 3hhm_B           77 FSSVVELINHYRNESLAQYNPKLDVKLLYPVSKY  110 (373)
T ss_dssp             BSSSHHHHHHHHHSCGGGSCTTCCCCCCEECCSC
T ss_pred             cCCHHHHHHHHhhCCccccCCCCCcccCCCCCCc
Confidence            99999999999999852      67899999874

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.81  E-value=8.9e-20  Score=176.00  Aligned_cols=100  Identities=29%  Similarity=0.489  Sum_probs=87.3

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccC
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (288)
                      |+++.++||||.|+|++||++|.. ...+|+||||+|++.+|.|+||++.+++|+||+|.+.+.+   . |++. +..|.
T Consensus         3 d~~~~~~W~~g~i~r~~ae~~L~~~~~~~G~fLvR~s~~~~g~~~ls~~~~~~~~h~~i~~~~~g---~-~~~~~~~~f~   78 (613)
T 2ozo_A            3 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNG---T-YAIAGGKAHC   78 (613)
T ss_dssp             CTTSSCTTBCBSCCHHHHHHHHHTTTCCTTEEEEEECTTBTTCEEEEEEETTEEEEEEEEECTTS---C-EEETTSCCBS
T ss_pred             CCCCCCCCcCccCCHHHHHHHHhccCCCCCeEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCC---c-EEECCCCCcC
Confidence            456677999999999999999964 3456999999999999999999999999999999986554   4 7775 67899


Q ss_pred             ChhhhhhhheecccC-CCcccccccce
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      ||.+||+||+.++.+ ++.|..||+++
T Consensus        79 sl~~Lv~~y~~~~~~l~~~L~~p~~~~  105 (613)
T 2ozo_A           79 GPAELCEFYSRDPDGLPCNLRKPCNRP  105 (613)
T ss_dssp             SHHHHHHHHTSCCTTSSSCCCSBCCCC
T ss_pred             CHHHHHHHHhhCCCCCCccCCccCCCC
Confidence            999999999999977 78899999874

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.81  E-value=8.7e-20  Score=176.72  Aligned_cols=101  Identities=29%  Similarity=0.486  Sum_probs=88.2

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-Cccc
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTF   82 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F   82 (288)
                      .++++.++||||.|+|++||++|+. ...+|+||||+|++..|.|+|||+.++.|+||+|.+.+.+   . |++. +..|
T Consensus         7 ~~~l~~~~Wy~g~isr~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~v~h~~i~~~~~g---~-~~~~~~~~f   82 (635)
T 4fl3_A            7 ADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNG---T-YAIAGGRTH   82 (635)
T ss_dssp             --CCTTCTTBCBSCCHHHHHHHHHHTTCCTTEEEEEECTTSSSCEEEEEEETTEEEEEEEEECTTS---C-EESTTCCCB
T ss_pred             cchhhcCCccCCCCCHHHHHHHHhcCCCCCceEEEeecccCCCCEEEEEEeCCEEEeEEEEEcCCC---C-EEeCCCCcc
Confidence            4678899999999999999999976 3456999999999999999999999999999999987554   4 7775 6799


Q ss_pred             CChhhhhhhheecccC-CCcccccccce
Q psy5076          83 SDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      .||.+||+||+.++++ ++.|.+||.+.
T Consensus        83 ~sl~~Lv~~y~~~~~~l~~~L~~p~~~~  110 (635)
T 4fl3_A           83 ASPADLCHYHSQESDGLVCLLKKPFNRP  110 (635)
T ss_dssp             SSHHHHHHHHTTCCTTSSSCCCEECCCC
T ss_pred             CCHHHHHHHHhhCCCCCeeccCCcCCCc
Confidence            9999999999999987 78899999863

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.80  E-value=1.1e-19  Score=176.07  Aligned_cols=100  Identities=32%  Similarity=0.555  Sum_probs=87.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC-ccc
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KTF   82 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-~~F   82 (288)
                      ...|+.++||||.|+|++||++|+.. +.+|+||||+| +.+|.|+|||+.++.|+||+|.+...+   . |++.+ ..|
T Consensus       160 ~~~~~~~~Wy~g~isr~~ae~~L~~~~~~~G~FLvR~s-~~~g~y~lsv~~~~~v~h~~i~~~~~g---~-~~~~~~~~F  234 (635)
T 4fl3_A          160 TTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRAR-DNNGSYALCLLHEGKVLHYRIDKDKTG---K-LSIPEGKKF  234 (635)
T ss_dssp             TSCGGGSTTBCCSCCHHHHHHHHHSSSCCTTCEEEEES-SSSSCEEEEEEETTEEEEEEEEECTTS---C-EESTTCCCB
T ss_pred             ccccccCCceeccCCHHHHHHHHHcCCCCCceEEEEec-CCCCCEEEEEEECCEEEEEEEEECCCC---C-EEeCCCCcc
Confidence            45788999999999999999999863 45699999999 568999999999999999999876554   4 88874 899


Q ss_pred             CChhhhhhhheecccC-CCcccccccce
Q psy5076          83 SDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      .||.+||+||+.++++ ++.|.+||++.
T Consensus       235 ~sl~~Lv~~y~~~~~~l~~~L~~p~~~~  262 (635)
T 4fl3_A          235 DTLWQLVEHYSYKADGLLRVLTVPCQKI  262 (635)
T ss_dssp             SSHHHHHHHHTTCCTTSSSCCCSBCCC-
T ss_pred             CCHHHHHHHhhhCCCCCccccCccCcCc
Confidence            9999999999999988 78899999873

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.77  E-value=1e-18  Score=168.61  Aligned_cols=99  Identities=28%  Similarity=0.461  Sum_probs=86.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-Cccc
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTF   82 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F   82 (288)
                      -..++.++||||.|+|++||++|+. ...+|+||||+| +..|.|+|||+.+++|+||+|.+...+   . |++. +..|
T Consensus       155 ~~~~~~~~wyhg~i~r~~ae~~L~~~~~~~G~FLvR~s-~~~~~~~lsv~~~~~v~h~~I~~~~~g---~-~~~~~~~~F  229 (613)
T 2ozo_A          155 TTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR-KEQGTYALSLIYGKTVYHYLISQDKAG---K-YCIPEGTKF  229 (613)
T ss_dssp             TSCTTTSTTBCTTCCHHHHHHHHSSSCCCTTCEEEEEC-SSTTEEEEEEEETTEEEEEEEEECTTC---C-EECTTSCEE
T ss_pred             ccccccCCccccCCCHHHHHHHHhhcCCCCceEEEEec-CCCCCEEEEEEECCeEEEEEEEECCCC---C-EEECCCCCc
Confidence            3578889999999999999999986 346699999999 568999999999999999999986544   4 8876 6799


Q ss_pred             CChhhhhhhheecccC-CCcccccccc
Q psy5076          83 SDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      .||.+||+||+.++.+ ++.|..||+.
T Consensus       230 ~sl~~Lv~~y~~~~~~l~~~L~~pC~~  256 (613)
T 2ozo_A          230 DTLWQLVEYLKLKADGLIYCLKEACPN  256 (613)
T ss_dssp             SSHHHHHHHHHHCCTTCSSCCCSBCCC
T ss_pred             CCHHHHHHHHhhCCCCceecccccccc
Confidence            9999999999999887 7889999876

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=6.6e-19  Score=135.11  Aligned_cols=87  Identities=22%  Similarity=0.321  Sum_probs=71.1

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEeCCCCCCceEEEEeeC--CeEEEEEEEeecCCCcceEEeeC-Cccc
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKEN--NKVSHYIINKITNTEQQTCYKIG-DKTF   82 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~~-~~~G~FLvR~s~~~~~~~~lsv~~~--~~v~h~~I~~~~~~~~~~~~~~~-~~~F   82 (288)
                      +++.++|||         .||... ..||+||||+|+ .+|.|+|||+.+  ++|+||+|...+++     |++. +..|
T Consensus        26 ~l~~~~Wyh---------~Ll~~g~~~dG~FLVR~S~-~~g~y~LSv~~~~~~~vkH~rI~~~~~~-----~~i~~~~~F   90 (126)
T 2cr4_A           26 SCEVERLFK---------ATSPRGEPQDGLYCIRNSS-TKSGKVLVVWDETSNKVRNYRIFEKDSK-----FYLEGEVLF   90 (126)
T ss_dssp             HHHHHHHHH---------HHSTTSCCCTTCEEEEECS-STTCEEEEEEETTTTEECCEECEEETTE-----EESSSSCEE
T ss_pred             ccccCCCHH---------HHhhCCCCCCCeEEEEecC-CCCCEEEEEEeCCCCCEEEEEEEECCCe-----EEEcCCccC
Confidence            455679999         333333 345999999999 799999999999  99999999987643     7776 5699


Q ss_pred             CChhhhhhhheecccC---CCcccccccc
Q psy5076          83 SDLPSLLAFYKVHYLD---TSPLIKPATK  108 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l~---~~~l~~p~~~  108 (288)
                      +||.+||+||+++++.   ...|+.||.+
T Consensus        91 ~sL~eLV~hY~~~~l~~~~~~~L~~P~~~  119 (126)
T 2cr4_A           91 VSVGSMVEHYHTHVLPSHQSLLLRHPYGY  119 (126)
T ss_dssp             SSHHHHHHHHTTSCCSSSSSCCCCSBSSC
T ss_pred             CCHHHHHHHHhhCCcCCCCCEEeCCcCCC
Confidence            9999999999999885   4568888886

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=99.74  E-value=3.9e-18  Score=161.76  Aligned_cols=93  Identities=24%  Similarity=0.444  Sum_probs=79.7

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChhhhh
Q psy5076          11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLL   89 (288)
Q Consensus        11 ~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~LV   89 (288)
                      ++||||.|+|++||++|.....+|+||||+|++.+|.|+||++.++.|+||+|...++    . |.+. +..|.||.+||
T Consensus         2 ~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~----~-~~~~~~~~F~sl~~Lv   76 (532)
T 2b3o_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGD----F-YDLYGGEKFATLTELV   76 (532)
T ss_dssp             CTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSSSEEEEEEEETTEEEEEEEECSSS----C-EEETTSCEESCHHHHH
T ss_pred             CCceeCCCCHHHHHHHHHhcCCCCCEEEecCCCCCCceEEEEEECCEEEEEEEEecCC----E-EEECCCcccCCHHHHH
Confidence            6899999999999999986546699999999988999999999999999999986433    3 7774 67899999999


Q ss_pred             hhheecc--c----C-CCcccccccc
Q psy5076          90 AFYKVHY--L----D-TSPLIKPATK  108 (288)
Q Consensus        90 ~~y~~~~--l----~-~~~l~~p~~~  108 (288)
                      +||+.++  +    + .+.|+.||+.
T Consensus        77 ~~y~~~~~~l~~~~g~~~~L~~P~~~  102 (532)
T 2b3o_A           77 EYYTQQQGVLQDRDGTIIHLKYPLNC  102 (532)
T ss_dssp             HHHHTTCSCBCCSSSCCBCCCEECCC
T ss_pred             HHHHhcccccccccCchhhccccccc
Confidence            9999887  2    2 4678888775

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=99.73  E-value=5.3e-18  Score=160.62  Aligned_cols=96  Identities=27%  Similarity=0.456  Sum_probs=81.3

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChh
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLP   86 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~   86 (288)
                      ++.++||||.|+|++||++|+....+|+||||+|++.+|.|+||++.++.++||+|...++.     |.+. +..|+||.
T Consensus         1 l~~~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~-----~~l~~~~~F~sl~   75 (525)
T 2shp_A            1 MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDY-----YDLYGGEKFATLA   75 (525)
T ss_dssp             -CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSSSC-----EEETTSCEESSHH
T ss_pred             CCCCCcccCCCCHHHHHHHHHhCCCCCcEEeeccCCCCCcEEEEEEECCEEEEEEEEecCCe-----EEECCCCeECCHH
Confidence            35679999999999999999764466999999999989999999999999999999865433     7775 68999999


Q ss_pred             hhhhhheecccC-------CCcccccccc
Q psy5076          87 SLLAFYKVHYLD-------TSPLIKPATK  108 (288)
Q Consensus        87 ~LV~~y~~~~l~-------~~~l~~p~~~  108 (288)
                      +||+||+.+++.       .+.|.+|++.
T Consensus        76 eLv~~y~~~~~~l~~~~g~~i~L~~Pv~~  104 (525)
T 2shp_A           76 ELVQYYMEHHGQLKEKNGDVIELKYPLNC  104 (525)
T ss_dssp             HHHHHHHTCTTCSBSSSSCBCCCCEECCC
T ss_pred             HHHHHHHhCCccccccccccccccccccc
Confidence            999999988732       3567788775

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=99.73  E-value=6.7e-18  Score=162.07  Aligned_cols=93  Identities=23%  Similarity=0.403  Sum_probs=79.4

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChhhhh
Q psy5076          11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLL   89 (288)
Q Consensus        11 ~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~LV   89 (288)
                      ++||||.|+|++||++|.....+|+||||+|++.+|.|+||++.++.|+||+|...++.     |++. +..|.||.+||
T Consensus         2 ~~Wy~g~isr~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~eLv   76 (595)
T 3ps5_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDF-----YDLYGGEKFATLTELV   76 (595)
T ss_dssp             CSCCCSSCCHHHHHHHHHHHCCTTCEEEEECSSSTTSEEEEEEETTEEEEEEEEECSSC-----EESSSSCCBSSHHHHH
T ss_pred             CCccCCCCCHHHHHHHHhhCCCCCEEEEeecCCCCCceEEEEEECCEEEEEEEEeCCCc-----EEEecCccccchhhhh
Confidence            69999999999999999875456999999999999999999999999999999875544     6564 67899999999


Q ss_pred             hhheecccC-------CCcccccccc
Q psy5076          90 AFYKVHYLD-------TSPLIKPATK  108 (288)
Q Consensus        90 ~~y~~~~l~-------~~~l~~p~~~  108 (288)
                      +||+.+++.       .+.|.+|++.
T Consensus        77 ~~y~~~~~~l~~~~g~~i~L~~P~~~  102 (595)
T 3ps5_A           77 EYYTQQQGVLQDRDGTIIHLKYPLNC  102 (595)
T ss_dssp             HHHHTTSSCCBCSSCCBCCCCCBCCC
T ss_pred             hhhccCcccccccccccccccccccc
Confidence            999998643       3466677664

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.72  E-value=1e-19  Score=163.29  Aligned_cols=152  Identities=16%  Similarity=0.248  Sum_probs=100.9

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccccccCCCCCCCCCCCCC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQ  190 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (288)
                      ..++|+|+|.++..+||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+..........+ ..........+.
T Consensus       175 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~~~~~~~~~-~~~~~~~~~~~~  252 (341)
T 2dyb_A          175 PRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGATGIFPLSFVKILKDFPEEDDPTN-WLRCYYYEDTIS  252 (341)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEE-ETTEEEEEEGGGEEEEECCCCTTCCCE-EEEEEEECSSCE
T ss_pred             cEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEE-ECCcEEEechHHeEEcCCCCccccccc-cccccccCCCCc
Confidence            468999999999999999999999999999889999999 789999999999998765422111000 000000000000


Q ss_pred             CCccccccccCCCCCeEEEEEEcccCCC--CCCCeeee--cCCCEEEEEEeCCCCeeEEEeCCee---eEecCC-cEEEc
Q psy5076         191 QTTPVRKTHLEVKLPAFARVKQVRVPNA--YDKTALKL--EIGDIIKVTKTNINGQWEGELNGKT---GHFPFT-HVEFI  262 (288)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~eLs~--~~g~~v~v~~~~~~~w~~~~~~~~~---G~~P~~-~v~~~  262 (288)
                      ............. ...++|+|+|.+..  .+..+|+|  .+||+|.|+++.++|||.|+++|+.   |+||.+ ||+.+
T Consensus       253 ~~~~~~~~~~~~~-~~~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~  331 (341)
T 2dyb_A          253 TIKDIAVEEDLSS-TPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQK  331 (341)
T ss_dssp             EEEEEEECSCTTC-CCCHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEEC
T ss_pred             cccccccccccCC-CcchhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEec
Confidence            0000000000111 11336788986533  44446666  8999999999999999999886554   599998 88776


Q ss_pred             CCC
Q psy5076         263 PTN  265 (288)
Q Consensus       263 ~~~  265 (288)
                      .+.
T Consensus       332 ~~~  334 (341)
T 2dyb_A          332 DNY  334 (341)
T ss_dssp             C--
T ss_pred             CCc
Confidence            654

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=99.72  E-value=6.7e-18  Score=162.04  Aligned_cols=98  Identities=27%  Similarity=0.471  Sum_probs=84.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCC---------eEEEEEEEeecCCCcceEEe
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN---------KVSHYIINKITNTEQQTCYK   76 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~---------~v~h~~I~~~~~~~~~~~~~   76 (288)
                      ...+.++||||.|+|++||.||+....+|+||||+|++.+|.|+|||+.++         .|+||+|....++     |+
T Consensus       103 ~~p~~~~Wy~g~~~r~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~v~H~~I~~~~~~-----~~  177 (595)
T 3ps5_A          103 SDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGR-----YT  177 (595)
T ss_dssp             CCSCCSTTEEESCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEESSSTTSCEEEEEEEEBCGGGC-----BB
T ss_pred             ccccccccccccCCHHHHHHHHhccCCCceEEEEecCCCCCcEEEEEEECCccccccCCCceEEEEEEEeCCE-----EE
Confidence            345677899999999999999977666799999999999999999999987         8999999875444     88


Q ss_pred             eCC-cccCChhhhhhhheecccC-----CCcccccccc
Q psy5076          77 IGD-KTFSDLPSLLAFYKVHYLD-----TSPLIKPATK  108 (288)
Q Consensus        77 ~~~-~~F~sl~~LV~~y~~~~l~-----~~~l~~p~~~  108 (288)
                      +.+ ..|+||.+||+||+++++.     ++.|.+||..
T Consensus       178 ~~~~~~F~sl~~LV~~y~~~~l~~~~g~~~~L~~p~~~  215 (595)
T 3ps5_A          178 VGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYA  215 (595)
T ss_dssp             SSSSCCBSSHHHHHHHHHHSCBCCTTSCCBCCCEECCC
T ss_pred             EcCCcCCCCHHHHHHHHhcCCccccCCcEEEeeccccc
Confidence            875 7999999999999998763     4678888864

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=99.67  E-value=1.5e-16  Score=150.61  Aligned_cols=96  Identities=30%  Similarity=0.596  Sum_probs=83.1

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCC----------eEEEEEEEeecCCCcceEEeeC
Q psy5076           9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN----------KVSHYIINKITNTEQQTCYKIG   78 (288)
Q Consensus         9 ~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~----------~v~h~~I~~~~~~~~~~~~~~~   78 (288)
                      +.++||||.|+|++||.+|+....+|+||||+|++.+|.|+||++.++          .|+||+|....++     |+++
T Consensus       108 ~~~~w~~g~~~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~~v~H~~I~~~~g~-----~~l~  182 (525)
T 2shp_A          108 TSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELK-----YDVG  182 (525)
T ss_dssp             TTCTTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEETTE-----EESS
T ss_pred             ccceeecccCCHHHHHHHHhccCCCceEEEEecCCCCCCEEEEEEECCccccccccccceEEEEEEecCCe-----EEEC
Confidence            457899999999999999987645699999999998999999999987          8999999987543     8887


Q ss_pred             -CcccCChhhhhhhheecccC-----CCcccccccce
Q psy5076          79 -DKTFSDLPSLLAFYKVHYLD-----TSPLIKPATKT  109 (288)
Q Consensus        79 -~~~F~sl~~LV~~y~~~~l~-----~~~l~~p~~~~  109 (288)
                       ...|.||.+||+||+.+++.     .+.|.+||...
T Consensus       183 ~~~~F~sL~eLV~~y~~~~l~~~~g~~~~L~~P~~~t  219 (525)
T 2shp_A          183 GGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTT  219 (525)
T ss_dssp             SSCCBSSHHHHHHHHHHSCCBCTTSCBCCCCEECCCS
T ss_pred             CCceeCcHHHHHHhhhccCccccCCeEEEeecccccc
Confidence             57999999999999998863     46788888763

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.65  E-value=4e-17  Score=120.06  Aligned_cols=91  Identities=23%  Similarity=0.345  Sum_probs=71.7

Q ss_pred             CCCcEEEEeCCCeEecccCCcccccccCCCCCCCCCCCCCCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCC
Q psy5076         151 ISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGD  230 (288)
Q Consensus       151 ~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~  230 (288)
                      .+|+.||||++||+.+........             |.          .  .....++|+|+|  .+...+||+|.+||
T Consensus         5 ~~g~~G~fP~~~v~~~~~~~~~~~-------------p~----------~--~~~~~~~al~dy--~~~~~~eLs~~~Gd   57 (98)
T 1udl_A            5 SSGQKGWFPASHVKLLGPSSERAT-------------PA----------F--HPVCQVIAMYDY--AANNEDELSFSKGQ   57 (98)
T ss_dssp             CSSCCSSCCCCCCCCCSCCCCCCC-------------SC----------C--CCSEEEEESSCC--CCSSTTSCCCCTTC
T ss_pred             CCCCEeEEEhhhEEEcCCcccccC-------------CC----------C--CCceEEEECCCC--CCCCCCccCCcCCC
Confidence            467899999999987664322100             00          0  013478999999  56777899999999


Q ss_pred             EEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         231 IIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       231 ~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      +|.|+++.+++||.++++|+.||||++||+.+....+.
T Consensus        58 ~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   95 (98)
T 1udl_A           58 LINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSSGP   95 (98)
T ss_dssp             EEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCSSC
T ss_pred             EEEEEEecCCCEEEEEECCcEEEEehHHeEEcCCCCCC
Confidence            99999998899999999999999999999999776653

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=99.65  E-value=8.5e-17  Score=152.60  Aligned_cols=95  Identities=27%  Similarity=0.476  Sum_probs=81.1

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCC---------eEEEEEEEeecCCCcceEEeeC-
Q psy5076           9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN---------KVSHYIINKITNTEQQTCYKIG-   78 (288)
Q Consensus         9 ~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~---------~v~h~~I~~~~~~~~~~~~~~~-   78 (288)
                      +.++||||.|+|++||.||+....+|+||||+|++.+|.|+|||+.++         .|+||+|....+.     |+++ 
T Consensus       106 ~~~~w~~g~i~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~Lsv~~~~~~~~~~~~~~v~h~~I~~~~g~-----~~l~~  180 (532)
T 2b3o_A          106 TSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGR-----YTVGG  180 (532)
T ss_dssp             GGCTTBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEEC----CCEEEEEEEEBCCTTS-----BBSSS
T ss_pred             ccccccccccchHHHHHHHhcCCCCceEEEecCCCCCCceEEEEEecCccccccCCCceEEEEEEEcCCc-----eeeCC
Confidence            456999999999999999986545699999999988999999999877         8999999886443     8887 


Q ss_pred             CcccCChhhhhhhheecccC-----CCcccccccc
Q psy5076          79 DKTFSDLPSLLAFYKVHYLD-----TSPLIKPATK  108 (288)
Q Consensus        79 ~~~F~sl~~LV~~y~~~~l~-----~~~l~~p~~~  108 (288)
                      ...|.+|.+||+||+.+++.     ++.|..||..
T Consensus       181 ~~~F~sl~eLV~~y~~~~l~~~~g~~~~L~~P~~~  215 (532)
T 2b3o_A          181 LETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYA  215 (532)
T ss_dssp             SCCBSSHHHHHHHHHHHCEECSSSCEECCCEECCC
T ss_pred             CcccCcHHHHHhhccccCccccCCeeEeccccccc
Confidence            57999999999999988642     4567788876

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.64  E-value=3.5e-16  Score=147.18  Aligned_cols=99  Identities=28%  Similarity=0.483  Sum_probs=84.0

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (288)
                      ..+++.++||||.|+|++||.+|+.. .+|+||||.|++..|.|+|||+.++.|+||+|.....+   . |++. ...|.
T Consensus        99 ~~~le~~~wyhg~i~r~~ae~ll~~~-~~G~fLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~g---~-~~~~~~~~F~  173 (495)
T 1opk_A           99 VNSLEKHSWYHGPVSRNAAEYLLSSG-INGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDG---K-LYVSSESRFN  173 (495)
T ss_dssp             SSSGGGSTTEEEECCHHHHHHHGGGC-CTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS---C-EESSTTSCBS
T ss_pred             cccccchhhhccCCCHHHHHHHhhCC-CCceEEEEeCCCCCCceEEEEeeCCeEEEEEEEecCCC---c-eEeccCccch
Confidence            45677889999999999999999764 45999999999889999999999999999999986554   4 6665 67899


Q ss_pred             ChhhhhhhheecccC-CCcccccccc
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ++.+||.||.....+ ++.|..|+++
T Consensus       174 sl~eLv~~~~~~~~g~~~~l~~~~~~  199 (495)
T 1opk_A          174 TLAELVHHHSTVADGLITTLHYPAPK  199 (495)
T ss_dssp             SHHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             hHHHHhhhhcccccccchhccccccc
Confidence            999999999887665 5667777765

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.64  E-value=3.8e-16  Score=145.31  Aligned_cols=100  Identities=34%  Similarity=0.606  Sum_probs=83.8

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEeCCCCCCceEEEEee-----CCeEEEEEEEeecCCCcceEEeeC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG   78 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~-~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~   78 (288)
                      .+.++.++||||.|+|++||++|+.. +.+|+||||.|++.+|.|+|||+.     ++.|+||+|.+...+   . |++.
T Consensus        59 ~~~le~~~w~~g~~~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g---~-~~~~  134 (452)
T 1fmk_A           59 SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSG---G-FYIT  134 (452)
T ss_dssp             TTSGGGSTTEEETCCHHHHHHHHTCTTSCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS---C-EESS
T ss_pred             cccccccccccCCccHHHHHHHhccCCCCCceEEEEeCCCCCCceEEEEEeeccCCCCcEEEEEEEEcCCC---C-EEEe
Confidence            34567789999999999999999863 556999999999889999999997     568999999986544   3 7776


Q ss_pred             -CcccCChhhhhhhheecccC-CCcccccccc
Q psy5076          79 -DKTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        79 -~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                       ...|.|+.+||+||+.+..+ +..|..||+.
T Consensus       135 ~~~~F~Sl~~Li~~y~~~~~~l~~~l~~~~~~  166 (452)
T 1fmk_A          135 SRTQFNSLQQLVAYYSKHADGLCHRLTTVCPT  166 (452)
T ss_dssp             TTSEESSHHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             cCcccCCHHHHHHHhhhccccchhhccccccc
Confidence             57999999999999987766 5667777765

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.62  E-value=5.4e-16  Score=147.27  Aligned_cols=100  Identities=34%  Similarity=0.606  Sum_probs=82.5

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEeCCCCCCceEEEEee-----CCeEEEEEEEeecCCCcceEEeeC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG   78 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~-~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~   78 (288)
                      .+.++.++||||.|+|++||.+|+.. +.+|+||||.|+...|.|+|||+.     ++.|+||+|.+.+.+   . |++.
T Consensus       142 ~~~l~~~~wy~g~i~r~~ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g---~-~~i~  217 (535)
T 2h8h_A          142 SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSG---G-FYIT  217 (535)
T ss_dssp             TTSGGGSTTBCCSCCHHHHHHHHTCTTCCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEBC-CCS---C-EEEE
T ss_pred             cccccccceeccccCHHHHHHHhccCCCCCCeEEEEecCCCCCcEEEEEEeeccCCCCceEEEEEEEcCCC---c-EEee
Confidence            34667789999999999999999863 556999999999889999999996     568999999986544   4 6665


Q ss_pred             -CcccCChhhhhhhheecccC-CCcccccccc
Q psy5076          79 -DKTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        79 -~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                       +..|.+|.+||.||+.+..+ +..|..+|+.
T Consensus       218 ~~~~F~SL~eLv~~y~~~~~~~~~~l~~~~~~  249 (535)
T 2h8h_A          218 SRTQFNSLQQLVAYYSKHADGLCHRLTTVCPT  249 (535)
T ss_dssp             TTEEESSHHHHHHHHHHCCTTSSSCCCEECCC
T ss_pred             ccccccChHHhheeeccccCcccccccccccc
Confidence             67899999999999987766 5667777764

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.62  E-value=7.6e-16  Score=143.56  Aligned_cols=82  Identities=22%  Similarity=0.491  Sum_probs=72.2

Q ss_pred             CCCCCCcc-----ccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcc
Q psy5076           7 PHDRNSWY-----FGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKT   81 (288)
Q Consensus         7 ~~~~~~Wy-----~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~   81 (288)
                      .++.++||     ||.|+|++||++|..  .+|+||||+|++.+|.|+|||+.++.|+||+|.. ++.     |++++..
T Consensus        42 ~~~~~~wy~~~w~hg~i~r~~ae~lL~~--~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~-~g~-----~~~~~~~  113 (463)
T 3cxl_A           42 EVENRPKYYGREFHGMISREAADQLLIV--AEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYY-DGK-----HFVGEKR  113 (463)
T ss_dssp             CCTTCCTTCCTTBCCSCCHHHHHHHHTT--STTEEEEEECSSSTTCEEEEEECSSSEEEEECEE-SSS-----EESSSCC
T ss_pred             cccCCCCccccccccCCCHHHHHHHHcC--CCCeEEEeccCCCCCCEEEEEEECCEEEEEEEec-CCe-----EEECCCc
Confidence            46667777     999999999999974  4599999999998999999999999999999987 433     8888899


Q ss_pred             cCChhhhhh-----hheecc
Q psy5076          82 FSDLPSLLA-----FYKVHY   96 (288)
Q Consensus        82 F~sl~~LV~-----~y~~~~   96 (288)
                      |+||.+||+     ||+...
T Consensus       114 F~sl~~Lv~dGl~~~~~~~~  133 (463)
T 3cxl_A          114 FESIHDLVTDGLITLYIETK  133 (463)
T ss_dssp             BSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhhccCC
Confidence            999999999     988754

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.62  E-value=2e-16  Score=143.73  Aligned_cols=85  Identities=29%  Similarity=0.561  Sum_probs=61.8

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccC
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFS   83 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~   83 (288)
                      ....++.++||||.|+|++||++|+   .+|+||||+|++.. .|+|||+.+++++||+|...++.     |.+++..|+
T Consensus         6 ~~~~l~~~~wyhg~i~r~~a~~lL~---~~G~flvR~s~~~~-~~~lsv~~~~~~~h~~i~~~~~~-----~~~~~~~F~   76 (377)
T 3cbl_A            6 VQKPLHEQLWYHGAIPRAEVAELLV---HSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLDNL-----YRLEGEGFP   76 (377)
T ss_dssp             GGSCGGGCTTBCTTCCHHHHHHHCC---STTEEEEEECC--C-CEEEEC-----CCEEEC----CC-----CCC----CC
T ss_pred             cccccccCCccCCCCCHHHHHHHHh---cCCCEEEEEeCCCC-cEEEEEEECCCccchhhccccce-----EEecceecc
Confidence            4456788899999999999999997   34999999999866 99999999999999999876543     778888999


Q ss_pred             Chhhhhhhheeccc
Q psy5076          84 DLPSLLAFYKVHYL   97 (288)
Q Consensus        84 sl~~LV~~y~~~~l   97 (288)
                      ++.+||+||..++.
T Consensus        77 sl~~LI~~y~~~~~   90 (377)
T 3cbl_A           77 SIPLLIDHLLSTQQ   90 (377)
T ss_dssp             SHHHHHHHHHHHTC
T ss_pred             chHHHHHHHhhccC
Confidence            99999999997654

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.61  E-value=1.3e-15  Score=141.61  Aligned_cols=96  Identities=32%  Similarity=0.560  Sum_probs=81.1

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCCh
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL   85 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl   85 (288)
                      .++.++||||.|+|++||++|+.... |+||||.|++..|.|+|||+.++.++||+|....++     |.+. ...|.++
T Consensus        76 ~~~~~~wyhg~i~r~~ae~~L~~~~~-G~FlvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~-----~~i~~~~~F~sl  149 (450)
T 1k9a_A           76 KLSLMPWFHGKITREQAERLLYPPET-GLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASK-----LSIDEEVYFENL  149 (450)
T ss_dssp             TEESCTTBCTTCCHHHHHHHTCSCCT-TEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETTE-----EESSSSSCBSSH
T ss_pred             ccccccccccCcCHHHhhhhhccCCC-ceEEEEecCCCCCceEEEEEeCCeeeEEEEEecCCc-----eEeccccccccH
Confidence            35678999999999999999976444 999999999989999999999999999999765544     7776 5799999


Q ss_pred             hhhhhhheecccC-CCcccccccc
Q psy5076          86 PSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        86 ~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      .+||.||.....+ ++.+..|+..
T Consensus       150 ~eLv~~y~~~~~~~~~~l~~~~~~  173 (450)
T 1k9a_A          150 MQLVEHYTTDADGLCTRLIKPKVM  173 (450)
T ss_dssp             HHHHHHHHHCCTTSSSCCCEECCC
T ss_pred             HHHHhhhcccccchhhhccccccc
Confidence            9999999987765 5666666654

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=7.1e-15  Score=105.73  Aligned_cols=64  Identities=63%  Similarity=1.074  Sum_probs=57.1

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      +.+++|+|+|.+.++..+||+|.+||+|.|+++.+++||.|.++|+.||||++||+.+....+.
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~~~   79 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPD   79 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCSSCCT
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCCCCcc
Confidence            5589999999655668889999999999999999999999999999999999999999765543

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.59  E-value=3.2e-15  Score=139.01  Aligned_cols=100  Identities=32%  Similarity=0.571  Sum_probs=82.6

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEee-----CCeEEEEEEEeecCCCcceEEeeC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG   78 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~   78 (288)
                      .+.++.++||||.|+|++||.+|.. ...+|+||||.|++..|.|+|||+.     ++.++||+|...+.+   . |++.
T Consensus        64 ~~~le~~~W~~g~i~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~H~~I~~~~~g---~-~~i~  139 (454)
T 1qcf_A           64 VDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNG---G-FYIS  139 (454)
T ss_dssp             TTCGGGSTTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTS---C-EESS
T ss_pred             ccccccccccccccchhhhhhhhhcCCCCCceEEEEECcCCCCeEEEEEEecccCCCCceEEEEEEEcCCC---c-EEEe
Confidence            3567778999999999999999964 4566999999999889999999998     678999999986544   3 6665


Q ss_pred             -CcccCChhhhhhhheecccC-CCcccccccc
Q psy5076          79 -DKTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        79 -~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                       ...|.++.+||+||.+...+ +..+..||..
T Consensus       140 ~~~~F~sl~eLv~~y~~~~~~l~~~~~~~~~~  171 (454)
T 1qcf_A          140 PRSTFSTLQELVDHYKKGNDGLCQKLSVPCMS  171 (454)
T ss_dssp             SSSCBSSHHHHHHHHTSSCTTSSSCCCSBCCC
T ss_pred             CccccCCHHHHHHHHHhccCCccccccccccc
Confidence             57999999999999987665 4556666654

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.58  E-value=9.1e-16  Score=101.69  Aligned_cols=54  Identities=26%  Similarity=0.472  Sum_probs=48.2

Q ss_pred             EEEEEEcccCCCCCCCe-eeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTA-LKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~e-Ls~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~  262 (288)
                      .++|+|||  .++.++| |+|.+||+|.|+++.++|||.|++ +|+.||||++||+.+
T Consensus         5 ~~rAlydy--~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            5 RCRTLYPF--SGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             EEEESCCC--CSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             EEEECccc--CCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            69999999  4565556 999999999999999999999997 589999999999875

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=99.58  E-value=1.3e-16  Score=143.38  Aligned_cols=79  Identities=30%  Similarity=0.503  Sum_probs=0.0

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC-ccc
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KTF   82 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-~~F   82 (288)
                      +++.++.++||||.|+|.+||.||... .+|+||||+| +.+|.|+|||+.++.|+||+|...+.+   . |+++. ..|
T Consensus       294 ~~~~~~~~~WyhG~isR~~AE~LL~~~-~~G~FLVR~S-s~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~~~~~~~F  367 (373)
T 3hhm_B          294 DLPHHDEKTWNVGSSNRNKAENLLRGK-RDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATG---Y-GFAEPYNLY  367 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCCCCcCCCCCHHHHHHHhccC-CCCcEEEEec-CCCCCEEEEEEECCeEEEEEEEEcCCC---c-EEeCCCCCC
Confidence            566788899999999999999999765 5599999999 779999999999999999999987655   3 66664 799


Q ss_pred             CChhhh
Q psy5076          83 SDLPSL   88 (288)
Q Consensus        83 ~sl~~L   88 (288)
                      +||.+|
T Consensus       368 ~SL~eL  373 (373)
T 3hhm_B          368 SSLKEL  373 (373)
T ss_dssp             ------
T ss_pred             CChhhC
Confidence            999986

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.58  E-value=4.1e-15  Score=100.35  Aligned_cols=56  Identities=21%  Similarity=0.209  Sum_probs=50.6

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~  263 (288)
                      ..++|+|||  .+..++||+|.+||+|.|+++.++|||.|++  +|+.||||++||+++.
T Consensus         7 ~~~~Alydy--~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l~   64 (65)
T 2lj0_A            7 FSYQALYSY--IPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPLY   64 (65)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEECC
T ss_pred             EEEEEceeE--CCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEEe
Confidence            368999999  5677889999999999999999999999987  5899999999999874

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.57  E-value=3.5e-15  Score=101.69  Aligned_cols=60  Identities=68%  Similarity=1.180  Sum_probs=53.7

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      +.+++|+|+|.+.+.+++||+|.+||+|.|+++.++|||.|+++|+.||||++||+.+..
T Consensus         6 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   65 (67)
T 2eyx_A            6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQ   65 (67)
T ss_dssp             SCBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBCS
T ss_pred             CEEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcCC
Confidence            558999999965433788999999999999999999999999999999999999998854

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.57  E-value=6.4e-15  Score=102.11  Aligned_cols=62  Identities=37%  Similarity=0.619  Sum_probs=55.2

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..++|+|+|.+.++.++||+|++||+|.|+++.+++||.|+++|+.||||++||+.+....+
T Consensus        10 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~   71 (73)
T 2ebp_A           10 GRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPS   71 (73)
T ss_dssp             EEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCCCSC
T ss_pred             eEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCCCCC
Confidence            37999999965455888999999999999999999999999999999999999999876443

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.57  E-value=5.1e-15  Score=100.91  Aligned_cols=63  Identities=63%  Similarity=1.089  Sum_probs=54.8

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      |.+++|+|+|.+.+..++||+|.+||+|.|+++.++|||.|.++|+.||||++||+.+....+
T Consensus         1 p~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~~   63 (67)
T 2bzy_A            1 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP   63 (67)
T ss_dssp             CEEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCSCC-
T ss_pred             CcEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCCcCc
Confidence            457999999954333778999999999999999999999999999999999999999976554

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=98.16  Aligned_cols=60  Identities=33%  Similarity=0.431  Sum_probs=53.0

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++.+++||.|+++|+.||||++||+.+....+.
T Consensus         3 ~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~~~   62 (65)
T 2nwm_A            3 AARLKFDF--QAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLEHHH   62 (65)
T ss_dssp             EEEECSCB--CCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCCC---
T ss_pred             EEEEeeeE--CCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCCCCCC
Confidence            68999999  5677889999999999999999999999999999999999999998876653

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.9e-14  Score=99.50  Aligned_cols=62  Identities=23%  Similarity=0.269  Sum_probs=55.8

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      +..++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++|+.||||++||+.+....+.
T Consensus         9 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~p~   70 (72)
T 2dl8_A            9 PIEAIAKFDY--VGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGPS   70 (72)
T ss_dssp             CEEEEESSCB--CCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCSSSCC
T ss_pred             CEEEEECccC--CcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCCCCCC
Confidence            4579999999  5677889999999999999998999999999999999999999998776653

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.53  E-value=1.2e-14  Score=96.19  Aligned_cols=56  Identities=23%  Similarity=0.566  Sum_probs=51.3

Q ss_pred             eEEeeeccCCCCCCCC-CCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDD-LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~e-Ls~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      .+++|+|+|.++..+| |+|++||+|.|+++.+++||.|+..+|+.|+||+|||+.+
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            4689999999998887 9999999999999988999999976899999999999864

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.52  E-value=2.1e-14  Score=95.58  Aligned_cols=57  Identities=25%  Similarity=0.322  Sum_probs=51.7

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      +..++|+|+|  .+..++||+|.+||+|.|+++.++|||.|+.+|+.||||++||+.+.
T Consensus         4 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l~   60 (60)
T 1w70_A            4 HMRAEALFDF--TGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK   60 (60)
T ss_dssp             SCEEEESSCB--CCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CcEEEECccC--CcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEECC
Confidence            3479999999  56777899999999999999999999999999999999999999863

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.52  E-value=2e-14  Score=94.96  Aligned_cols=55  Identities=33%  Similarity=0.516  Sum_probs=50.8

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+|+.||||++||+.+.
T Consensus         3 ~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDY--QAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCB--CCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccc--CCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            48899999  56777899999999999999999999999999999999999999875

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.52  E-value=2.4e-14  Score=94.61  Aligned_cols=55  Identities=25%  Similarity=0.431  Sum_probs=50.9

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      +++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+|+.||||++||++++
T Consensus         3 ~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            3 WARALYDF--EALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             EEEESSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccC--CCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            68999999  56777899999999999999999999999999999999999999874

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.8e-14  Score=97.45  Aligned_cols=59  Identities=22%  Similarity=0.164  Sum_probs=53.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.+.++++.|+||++||+.+....
T Consensus         8 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2dmo_A            8 EAHRVLFGF--VPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSGPS   66 (68)
T ss_dssp             EEEEECSSC--CCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCCSC
T ss_pred             CEEEECcCC--CcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCCCC
Confidence            479999999  56777899999999999999999999999999999999999999986543

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.52  E-value=2.8e-14  Score=97.40  Aligned_cols=59  Identities=29%  Similarity=0.388  Sum_probs=52.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.|+++|+.||||++||+.+....
T Consensus         4 ~~~~Alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   62 (68)
T 2ew3_A            4 PCCRGLYDF--EPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLE   62 (68)
T ss_dssp             CEEEESSCB--CCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESCC--
T ss_pred             CEEEEeeeE--CCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcCccC
Confidence            479999999  56777899999999999999999999999999999999999999886543

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.51  E-value=3.6e-14  Score=97.12  Aligned_cols=60  Identities=33%  Similarity=0.617  Sum_probs=53.8

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.  ++|||.|+++|+.||||++||+.+....+
T Consensus         3 ~~~~Alydy--~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~~~~   64 (69)
T 2ydl_A            3 DYCKVIFPY--EAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEH   64 (69)
T ss_dssp             EEEEESSCB--CCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCSCCC
T ss_pred             cEEEEcccC--CCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCCCcc
Confidence            479999999  5677789999999999999986  89999999999999999999999876554

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.51  E-value=2.7e-14  Score=94.33  Aligned_cols=57  Identities=25%  Similarity=0.440  Sum_probs=51.3

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      +.+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+++.||||++||+.++
T Consensus         2 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   58 (58)
T 2vwf_A            2 PTYVQALFDF--DPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAVN   58 (58)
T ss_dssp             -CEEEESSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEECceE--CCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEECC
Confidence            4579999999  56777899999999999999999999999999999999999999864

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=3.4e-14  Score=97.08  Aligned_cols=60  Identities=18%  Similarity=0.320  Sum_probs=53.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||++||+.+....
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2dl4_A            7 GNTYVALYKF--VPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGPS   66 (68)
T ss_dssp             CCEEEESSCC--CCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCCCC
T ss_pred             CCEEEEeeeE--CCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCCCC
Confidence            3479999999  55777799999999999999999999999999999999999999997654

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.51  E-value=5.2e-14  Score=102.27  Aligned_cols=61  Identities=28%  Similarity=0.406  Sum_probs=54.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      .+++|+|+|  .+...+||+|.+||+|.|+++.  ++|||.|+++|+.||||.+||+.+......
T Consensus         6 ~~~~Alydy--~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~   68 (93)
T 1uff_A            6 SGYRALYPF--EARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE   68 (93)
T ss_dssp             CCEEESSCB--CCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSSSSC
T ss_pred             EEEEECccC--CCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCcccc
Confidence            369999999  5677889999999999999986  789999999999999999999999776544

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.51  E-value=3.2e-14  Score=94.01  Aligned_cols=56  Identities=27%  Similarity=0.407  Sum_probs=51.2

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+|+.||||++||+.++
T Consensus         3 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   58 (58)
T 1sem_A            3 KFVQALFDF--NPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYN   58 (58)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECcCC--CCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEECC
Confidence            479999999  56777899999999999999999999999999999999999999763

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.51  E-value=2.5e-14  Score=94.56  Aligned_cols=55  Identities=25%  Similarity=0.312  Sum_probs=50.2

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCcEEEcC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIP  263 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~~  263 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++.+++||.++..  |+.||||++||+.++
T Consensus         2 ~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   58 (58)
T 1jo8_A            2 WATAEYDY--DAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             CEEESSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEECceE--CCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEECC
Confidence            48899999  56777899999999999999999999999998  999999999999864

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.51  E-value=3.1e-14  Score=95.39  Aligned_cols=57  Identities=33%  Similarity=0.459  Sum_probs=50.7

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEe-CCCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NINGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~-~~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++ .++|||.|+++|+.||||++||+.+...
T Consensus         3 ~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   60 (62)
T 2j6f_A            3 DYIVEYDY--DAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE   60 (62)
T ss_dssp             CEEECSCB--CCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC--
T ss_pred             EEEECccC--CcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCC
Confidence            48899999  567778999999999999999 8899999999999999999999998653

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=6e-14  Score=100.86  Aligned_cols=63  Identities=25%  Similarity=0.281  Sum_probs=56.1

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCcc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSV  269 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~  269 (288)
                      ..+++|+|+|  .+...+||+|.+||+|.|+++.+++||.+++.++.||||++||+.+....++.
T Consensus        17 ~~~~~Alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~   79 (88)
T 1x2q_A           17 ARKVRALYDF--EAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEA   79 (88)
T ss_dssp             CEEEEESSCC--CCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSSCCSCC
T ss_pred             CeEEEEcccC--CCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCcCccc
Confidence            3479999999  56778899999999999999999999999999999999999999987766544

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.51  E-value=7.4e-14  Score=98.53  Aligned_cols=61  Identities=31%  Similarity=0.548  Sum_probs=54.4

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC-----CeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN-----GKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~-----~~~G~~P~~~v~~~~~~~~  267 (288)
                      +.+++|+|+|  .+..++||+|.+||+|.|+++.+++||.+++.     ++.||||++||+.+.....
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~~~   72 (80)
T 1ue9_A            7 GEIAQVTSAY--VASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSE   72 (80)
T ss_dssp             CEEEEECSCC--CCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCCS
T ss_pred             CeEEEECccc--CCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCCCC
Confidence            5689999999  56778899999999999999999999999886     4899999999999976654

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.51  E-value=3.7e-14  Score=93.70  Aligned_cols=55  Identities=22%  Similarity=0.311  Sum_probs=50.6

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++|+.||||++||+++
T Consensus         3 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQF--DPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCB--CCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceE--CCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            378999999  5677789999999999999999999999999999999999999875

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.4e-13  Score=96.65  Aligned_cols=60  Identities=32%  Similarity=0.325  Sum_probs=53.7

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|+|  .+...+||+|.+||+|.|+++.+++||.++++|+.||||++||+.+....
T Consensus        17 ~~~~~al~dy--~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~   76 (78)
T 2ed0_A           17 LEKVVAIYDY--TKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISGPS   76 (78)
T ss_dssp             SEEEEECSCB--CCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSSSS
T ss_pred             CEEEEECccC--CccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCCCC
Confidence            3479999999  56777899999999999999999999999999999999999999986543

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.50  E-value=4.1e-14  Score=94.19  Aligned_cols=55  Identities=33%  Similarity=0.526  Sum_probs=50.6

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+++.||||++||+.+
T Consensus         6 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            6 PQCKALYAY--DAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccC--CcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            479999999  5677789999999999999999999999999999999999999875

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.50  E-value=3.9e-14  Score=93.96  Aligned_cols=55  Identities=36%  Similarity=0.579  Sum_probs=50.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+++.||||++||+.+
T Consensus         5 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            5 SVVRAKFNF--QQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECcee--CCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            379999999  5677789999999999999999999999999999999999999875

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.50  E-value=4.4e-14  Score=95.30  Aligned_cols=58  Identities=34%  Similarity=0.532  Sum_probs=52.7

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+|+.||||++||+.+..
T Consensus         6 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            6 QLVVRAKFNF--QQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CCEEEESSCB--CCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CEEEEEcccc--CCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            4479999999  556778999999999999999999999999999999999999998864

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.50  E-value=5.1e-14  Score=96.16  Aligned_cols=60  Identities=27%  Similarity=0.380  Sum_probs=53.7

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||++||+.+....
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2djq_A            7 GPRAKALCNY--RGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISGPS   66 (68)
T ss_dssp             CCEEEECSCC--CSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCSCC
T ss_pred             ceEEEECCCC--CCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCCCC
Confidence            3479999999  56778899999999999999999999999999999999999999876543

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.50  E-value=4.7e-14  Score=97.74  Aligned_cols=61  Identities=28%  Similarity=0.385  Sum_probs=54.9

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||++||+.+......
T Consensus         8 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   68 (73)
T 2dbm_A            8 PCCRALYDF--EPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS   68 (73)
T ss_dssp             CEEEESSCB--CCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSCCSCC
T ss_pred             CEEEEcccc--CCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccCCCCC
Confidence            479999999  5677789999999999999999999999999999999999999999776554

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.49  E-value=6.4e-14  Score=92.49  Aligned_cols=56  Identities=29%  Similarity=0.292  Sum_probs=51.0

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++.+++||.+..+|+.||||++||+++.+
T Consensus         3 ~a~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   58 (58)
T 4e6r_A            3 PAFVXFAY--VAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEVD   58 (58)
T ss_dssp             EEEECSCB--CCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             EEEECccC--CCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEECCC
Confidence            58999999  567778999999999999999999999999999999999999998653

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1e-13  Score=97.85  Aligned_cols=61  Identities=10%  Similarity=0.122  Sum_probs=54.8

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||++||+.+....+
T Consensus         8 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~   68 (80)
T 2ekh_A            8 ATSYMTCSAY--QKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQP   68 (80)
T ss_dssp             CEEEEECSCB--CCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCCCC
T ss_pred             CCEEEECCCC--CCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCCCC
Confidence            3479999999  567788999999999999999999999999999999999999999876553

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=5.7e-14  Score=98.12  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=54.7

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||++||+.+....+.
T Consensus        11 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   71 (76)
T 2epd_A           11 VEAVACFAY--TGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQ   71 (76)
T ss_dssp             EEEEESSCE--ECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSSCSCC
T ss_pred             EEEEECcCC--CCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCCCCC
Confidence            479999999  5577789999999999999998999999999999999999999998766553

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.49  E-value=5.4e-14  Score=92.91  Aligned_cols=56  Identities=34%  Similarity=0.452  Sum_probs=50.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      +.+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+++.||||++||+.+
T Consensus         3 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            3 GIQVKALYDY--DAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             CEEEEESSCB--CCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccC--CCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            3479999999  5677789999999999999999999999999999999999999875

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.49  E-value=6.6e-14  Score=94.70  Aligned_cols=56  Identities=25%  Similarity=0.317  Sum_probs=51.2

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++|+.||||++||+.++
T Consensus        10 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   65 (65)
T 3ulr_B           10 ITAIALYDY--QAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ   65 (65)
T ss_dssp             SCEEECSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEEEeeE--CCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEECC
Confidence            369999999  56777899999999999999999999999999999999999999864

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.49  E-value=8.9e-14  Score=98.09  Aligned_cols=61  Identities=33%  Similarity=0.534  Sum_probs=54.3

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCC-eeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNING-QWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~-w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|+|+|  .+...+||+|.+||+|.|+++.+++ ||.|+++|+.||||++||+.+....+
T Consensus        10 ~~~~~alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~   71 (80)
T 2i0n_A           10 AKYARALKDY--NVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSDVP   71 (80)
T ss_dssp             CCEEEESSCB--CCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESSCCC
T ss_pred             CeEEEECCCC--CcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCCCC
Confidence            3479999999  5677889999999999999998777 99999999999999999999976554

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.49  E-value=9.8e-14  Score=93.55  Aligned_cols=56  Identities=23%  Similarity=0.475  Sum_probs=51.9

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+|+|.++..+||+|++||+|.|+++.+++||.|+. .+|+.|+||+|||+++
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            7 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             EEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            4689999999999999999999999999999999999986 4689999999999976

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.49  E-value=4.9e-14  Score=98.44  Aligned_cols=62  Identities=23%  Similarity=0.367  Sum_probs=54.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCC---eeeEecCCcEEEcCCCCCc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG---KTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~---~~G~~P~~~v~~~~~~~~~  268 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.+++.+   +.||||++||+.+....+.
T Consensus        10 ~~~~~alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~~p~   74 (76)
T 2ed1_A           10 VRRVKTIYDC--QADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDSGPS   74 (76)
T ss_dssp             CEEEEESSCC--CCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCCCCS
T ss_pred             CeEEEECccC--CCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCCCCC
Confidence            4479999999  567778999999999999999999999999876   8999999999999776553

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.49  E-value=1.3e-14  Score=98.23  Aligned_cols=58  Identities=29%  Similarity=0.481  Sum_probs=52.5

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      +++|+|+|  .+..++||+|.+||+|.|+++.++|||.|+++|+.|+||++||+.+....
T Consensus         3 ~~~Alydy--~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~   60 (65)
T 2fei_A            3 QCKVLFEY--IPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEH   60 (65)
T ss_dssp             EEECSSCC--CCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCCCCC
T ss_pred             EEEECccC--CcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcCCCC
Confidence            68999999  56777899999999999999999999999999999999999998876544

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.48  E-value=3.2e-14  Score=95.33  Aligned_cols=56  Identities=30%  Similarity=0.294  Sum_probs=51.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.|+++|+.||||++||+.+.
T Consensus         6 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            6 SQVEALFSY--EATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             EEEECCSCB--CCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             eEEEECCCC--CcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEECC
Confidence            479999999  56778899999999999999999999999999999999999998764

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.48  E-value=6.6e-14  Score=94.40  Aligned_cols=56  Identities=30%  Similarity=0.522  Sum_probs=50.6

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.  ++|||.|+++|+.||||++||+.+.
T Consensus         7 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l~   64 (64)
T 2jte_A            7 EYCRTLFPY--TGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQIS   64 (64)
T ss_dssp             EEEEESSCB--CCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECccC--CccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEECc
Confidence            479999999  5677889999999999999985  7899999999999999999999863

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.48  E-value=2.1e-14  Score=100.74  Aligned_cols=60  Identities=23%  Similarity=0.297  Sum_probs=54.1

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.++|||.|+++|+.||||++||+.+....+
T Consensus        19 ~~~~Alydy--~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~~p~   78 (79)
T 1z9q_A           19 PRAEALFDF--TGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPE   78 (79)
T ss_dssp             CCEEESSCC--CCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSCCCC
T ss_pred             eEEEEcCcc--CCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCCCCC
Confidence            469999999  567778999999999999999999999999999999999999999876543

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.48  E-value=1.3e-13  Score=96.80  Aligned_cols=61  Identities=28%  Similarity=0.377  Sum_probs=54.6

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ...++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||++||+.+.....
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   67 (78)
T 2yuo_A            7 GRRAKALLDF--ERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSK   67 (78)
T ss_dssp             CEEEEESSCB--CCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECCCCS
T ss_pred             ceEEEECccC--CCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCCcCC
Confidence            3479999999  567778999999999999999999999999999999999999999976543

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.48  E-value=1e-13  Score=95.98  Aligned_cols=54  Identities=22%  Similarity=0.576  Sum_probs=50.2

Q ss_pred             EeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       113 ~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ++|+++|.+ ..++|+|++||+|.|+++.+++||.|+ .+|+.|+||++||+.+..
T Consensus         3 a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~   56 (73)
T 2kxd_A            3 APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDS   56 (73)
T ss_dssp             CCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEECCS
T ss_pred             EEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEE-ECCCEEEEehHHeEEcCC
Confidence            688999998 899999999999999999889999998 889999999999998754

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.48  E-value=1e-13  Score=94.62  Aligned_cols=59  Identities=32%  Similarity=0.381  Sum_probs=53.1

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||++||+.+...
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl3_A            7 GRPARAKFDF--KAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSGP   65 (68)
T ss_dssp             SEEEEESSCB--CCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCSC
T ss_pred             CcEEEECccC--CCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCCC
Confidence            3479999999  5677789999999999999999999999999999999999999998654

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=7.1e-14  Score=95.44  Aligned_cols=59  Identities=24%  Similarity=0.210  Sum_probs=53.0

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      ...++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||++||+.+...
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1x2p_A            7 GEEFVAIADY--AATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSGP   65 (68)
T ss_dssp             CCEEEESSCC--CCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCCCS
T ss_pred             CCEEEECceE--CCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECCCC
Confidence            3479999999  5677789999999999999999999999999999999999999988543

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.2e-13  Score=95.65  Aligned_cols=60  Identities=28%  Similarity=0.513  Sum_probs=53.0

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEe---CCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKT---NINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~---~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++   .+++||.++++++.||||++||+.+....
T Consensus         8 ~~~~~alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   70 (73)
T 2dl7_A            8 VCFVKALYDY--EGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGP   70 (73)
T ss_dssp             CEEEEESSCB--CCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSSC
T ss_pred             CEEEEECccC--CcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCCC
Confidence            3479999999  567778999999999999998   47899999999999999999999986543

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=94.50  Aligned_cols=58  Identities=26%  Similarity=0.308  Sum_probs=52.5

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||++||+.+..
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            7 GKVFRALYTF--EPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             SEEEEESSCC--CCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECCC
T ss_pred             cEEEEECceE--CCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            3479999999  567778999999999999999999999999999999999999999844

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.47  E-value=8.6e-14  Score=92.57  Aligned_cols=55  Identities=29%  Similarity=0.479  Sum_probs=49.8

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.  +++||.++.+++.||||++||+.+
T Consensus         4 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSF--AGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCB--CCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccC--CcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            379999999  5677789999999999999987  789999999999999999999875

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.47  E-value=4.3e-14  Score=96.83  Aligned_cols=58  Identities=22%  Similarity=0.397  Sum_probs=52.3

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC---CCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN---INGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~---~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.   +++||.|+++|+.||||++||+.+...
T Consensus         4 ~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   64 (69)
T 1wyx_A            4 VLAKALYDN--VAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGM   64 (69)
T ss_dssp             EEEEESSCB--CCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEEE
T ss_pred             EEEEECccC--CcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCCC
Confidence            479999999  5677889999999999999998   799999999999999999999988543

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.47  E-value=7.6e-14  Score=95.31  Aligned_cols=57  Identities=21%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCC-----eeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG-----KTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~-----~~G~~P~~~v~~~~  263 (288)
                      +..++|+|+|  .+..++||+|.+||+|.|+++.+++||.|++.+     +.|+||++||+.++
T Consensus         7 ~~~~~Alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~~   68 (68)
T 1tg0_A            7 PFKVVAQFPY--KSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQG   68 (68)
T ss_dssp             SEEEEESSCB--CCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEECC
T ss_pred             CEEEEECeeE--CcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEECC
Confidence            4579999999  567778999999999999999999999998866     99999999998753

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=3e-13  Score=95.15  Aligned_cols=59  Identities=24%  Similarity=0.311  Sum_probs=53.7

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .+...+||+|.+||+|.|+++.+++||.++++++.||||++||+.+....
T Consensus        18 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~p   76 (79)
T 1x69_A           18 ITAVALYDY--QAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGP   76 (79)
T ss_dssp             CCEEESSCC--CCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCCCC
T ss_pred             eEEEECccC--CCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCCCC
Confidence            469999999  56777899999999999999999999999999999999999999987654

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.47  E-value=8.1e-14  Score=94.27  Aligned_cols=57  Identities=16%  Similarity=0.033  Sum_probs=51.2

Q ss_pred             CeEEEEEEcccCCC-CCCCeeeecCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNA-YDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~-~~~~eLs~~~g~~v~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~  263 (288)
                      +..++|+|+|  .+ ..++||+|.+||+|.|+++.++|||.++  .+|+.||||++||+.++
T Consensus         5 ~~~~~alydy--~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            5 RRRVRAILPY--TKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             TCEEEESSCB--CCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CcEEEEcccc--CCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            3479999999  56 7778999999999999999999999998  57999999999999875

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1e-13  Score=98.00  Aligned_cols=62  Identities=23%  Similarity=0.365  Sum_probs=55.5

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++|+.||||++||+.+.+..+.
T Consensus        10 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   71 (81)
T 2ysq_A           10 IVSAEAVWDH--VTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDE   71 (81)
T ss_dssp             CEEEEESSCC--CCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSCCCCC
T ss_pred             ceEEEEeeeE--CCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCCcccc
Confidence            3479999999  5677789999999999999999999999999999999999999999776543

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.4e-13  Score=96.90  Aligned_cols=62  Identities=35%  Similarity=0.582  Sum_probs=55.3

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||.+||+.+......
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   68 (79)
T 2yun_A            7 GRLCKALYSF--QARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGN   68 (79)
T ss_dssp             SEEEEESSCB--CCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSCSSC
T ss_pred             CCEEEECccC--CcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCCCCC
Confidence            3479999999  5677789999999999999999999999999999999999999999776543

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.47  E-value=6.4e-14  Score=94.76  Aligned_cols=58  Identities=26%  Similarity=0.417  Sum_probs=51.2

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~~  265 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++ .+|+.||||++||+.+...
T Consensus         4 ~~~~Alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   62 (65)
T 1b07_A            4 EYVRALFDF--NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHH   62 (65)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC--
T ss_pred             eEEEECCcC--CCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecCCC
Confidence            479999999  567778999999999999999999999998 7899999999999988654

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.47  E-value=5.4e-14  Score=93.56  Aligned_cols=55  Identities=24%  Similarity=0.344  Sum_probs=50.0

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEE
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF  261 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~  261 (288)
                      +.+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++|+.||||++||+.
T Consensus         6 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   60 (60)
T 2gnc_A            6 PEFAIAKFDY--VGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV   60 (60)
T ss_dssp             CEEEEESSCB--CCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEC
T ss_pred             CEEEEECCCC--CcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEEC
Confidence            4579999999  567778999999999999999889999999999999999999973

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.3e-13  Score=94.92  Aligned_cols=61  Identities=20%  Similarity=0.282  Sum_probs=54.0

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-CCCeeEEEe--CCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGEL--NGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++. ++|||.|+.  +|+.||||.+||+.+....+
T Consensus         6 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   69 (71)
T 2jt4_A            6 KKRGIVQYDF--MAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKH   69 (71)
T ss_dssp             CEEEEECSCB--CCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTSSC
T ss_pred             CCEEEEcccC--CCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCcCC
Confidence            3479999999  5677789999999999999987 899999999  89999999999999876543

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.47  E-value=1e-13  Score=98.25  Aligned_cols=58  Identities=16%  Similarity=0.287  Sum_probs=52.9

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      .+++|+|||  .+..++||+|.+||+|.|+++.++|||.|..+|+.||||++||+.+...
T Consensus        18 ~~~~Alydy--~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (83)
T 1neg_A           18 ELVLALYDY--QEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAA   75 (83)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCTT
T ss_pred             eEEEEcccc--CCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECCCC
Confidence            479999999  5677789999999999999999999999999999999999999998654

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.2e-13  Score=95.53  Aligned_cols=60  Identities=23%  Similarity=0.226  Sum_probs=53.3

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.++|||.|+..  |+.||||++||+.+....+
T Consensus         6 ~~~~Alydy--~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~~~   67 (73)
T 2lcs_A            6 QRAVALYDF--EPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPELE   67 (73)
T ss_dssp             EEEEESSCB--CCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSSCC
T ss_pred             CEEEECccC--CCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCCCC
Confidence            479999999  56777899999999999999999999999985  8999999999999865544

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=91.34  Aligned_cols=55  Identities=27%  Similarity=0.339  Sum_probs=50.1

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEE
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF  261 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~  261 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+++.||||++||++
T Consensus         3 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            3 VKVFRALYTF--EPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             CEEEEESSCB--CCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             cEEEEECccC--CCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            3479999999  567778999999999999999999999999999999999999975

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=9e-14  Score=95.75  Aligned_cols=60  Identities=20%  Similarity=0.341  Sum_probs=53.6

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC---CCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN---INGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~---~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.   +++||.++++++.||||++||+.+....
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (71)
T 2cre_A            7 GLLARALYDN--CPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSGPS   69 (71)
T ss_dssp             CEEEEESSCC--CCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCCST
T ss_pred             cEEEEECccc--CcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCCCC
Confidence            4579999999  5677789999999999999997   8999999999999999999999986543

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.46  E-value=1.2e-13  Score=92.39  Aligned_cols=56  Identities=20%  Similarity=0.338  Sum_probs=51.3

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+|+.||||++||+.++
T Consensus         7 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~d   62 (62)
T 3ngp_A            7 ELVLVLYDY--QEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKLD   62 (62)
T ss_dssp             CEEEECSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECcCC--CCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEECC
Confidence            479999999  56777899999999999999999999999999999999999999863

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.46  E-value=1.1e-13  Score=92.30  Aligned_cols=56  Identities=23%  Similarity=0.319  Sum_probs=50.8

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeee-EecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTG-HFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G-~~P~~~v~~~~~  264 (288)
                      +++|+|+|  .+..++||+|.+||+|.|+++.+++||.+++.++.| |||++||+.+.+
T Consensus         5 ~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~~   61 (61)
T 1y0m_A            5 AVKALFDY--KAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMIN   61 (61)
T ss_dssp             CEEESSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECCC
T ss_pred             EEEECcCC--CcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECCC
Confidence            68999999  567778999999999999999999999999998886 999999998753

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.46  E-value=6.8e-14  Score=92.08  Aligned_cols=54  Identities=28%  Similarity=0.449  Sum_probs=48.6

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~  262 (288)
                      +++|+|+|  .+..++||+|.+||+|.|+++.+++||.++ .+|+.||||++||+++
T Consensus         3 ~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            3 YVRALFDF--NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEEESSCB--CCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             EEEECCcC--CCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            68999999  557777999999999999999999999998 7899999999999864

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.46  E-value=2.7e-13  Score=95.82  Aligned_cols=61  Identities=25%  Similarity=0.267  Sum_probs=53.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEe--CCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKT--NINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~--~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ...++|+|+|  .+...+||+|.+||+|.|+++  .+++||.++++++.||||++||+.+....+
T Consensus        17 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   79 (81)
T 1x43_A           17 NRKARVLYDY--DAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGPS   79 (81)
T ss_dssp             CEEEEESSCC--CCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCCCCC
T ss_pred             CeEEEEcccC--CCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCCCCC
Confidence            3479999999  567778999999999999998  469999999999999999999999976543

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.5e-13  Score=98.10  Aligned_cols=60  Identities=20%  Similarity=0.257  Sum_probs=53.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEe--CCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKT--NINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~--~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|+|  .+...+||+|.+||+|.|+.+  .+++||.|+++++.||||++||+.+....
T Consensus         8 ~~~~~al~dy--~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~   69 (85)
T 2dlp_A            8 SGYVIALRSY--ITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPD   69 (85)
T ss_dssp             CCEEEESSCB--CCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCCSC
T ss_pred             CEEEEECCCC--CccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCCcC
Confidence            3489999999  567778999999999999987  88999999999999999999999986544

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.45  E-value=1.1e-13  Score=92.74  Aligned_cols=56  Identities=20%  Similarity=0.129  Sum_probs=50.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~  263 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.+++||.++  .+|+.|+||++||+++.
T Consensus         4 ~~~~al~~y--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRF--VPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCB--CCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccC--CccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            368999999  567778999999999999999999999998  57999999999999874

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.45  E-value=1.4e-13  Score=95.09  Aligned_cols=57  Identities=32%  Similarity=0.575  Sum_probs=51.9

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      .+++|+|+|  .+...+||+|.+||+|.|+++.+++||.++++|+.||||.+||+.+..
T Consensus        14 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           14 TYGVALYRF--QALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             CEEEESSCB--CCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             eEEEECccC--CCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECCC
Confidence            479999999  567778999999999999999999999999999999999999999865

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.45  E-value=1.2e-13  Score=94.92  Aligned_cols=60  Identities=30%  Similarity=0.556  Sum_probs=53.2

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.  +++||.++++|+.||||++||+.+....
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~   68 (70)
T 2da9_A            7 GDYCKVIFPY--EAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSGPS   68 (70)
T ss_dssp             SEEEEECSCC--CCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCCCC
T ss_pred             CcEEEECcCC--CCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCCCC
Confidence            3479999999  5677789999999999999985  8999999999999999999999986543

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.45  E-value=1.5e-13  Score=95.20  Aligned_cols=61  Identities=15%  Similarity=0.279  Sum_probs=53.2

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+++.||||++||+.+.....
T Consensus         5 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   65 (73)
T 3thk_A            5 KELVLALYDY--QEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQS   65 (73)
T ss_dssp             CCEEEECSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC---
T ss_pred             CEEEEECcCC--CcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCCCCC
Confidence            3479999999  567778999999999999999999999999999999999999999876543

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.4e-13  Score=95.84  Aligned_cols=58  Identities=24%  Similarity=0.300  Sum_probs=51.3

Q ss_pred             CeEEEEEEcccCCCCC-------CCeeeecCCCEEEEEE-eCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         205 PAFARVKQVRVPNAYD-------KTALKLEIGDIIKVTK-TNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~-------~~eLs~~~g~~v~v~~-~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      ..+++|+|+|.  +..       .+||+|.+||+|.|++ ..+++||.++++|+.||||++||+.+..
T Consensus         7 ~~~~~Alydy~--~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   72 (75)
T 2ege_A            7 GKIMIAALDYD--PGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSL   72 (75)
T ss_dssp             SEEEEESSCBC--TTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEECCC
T ss_pred             CcEEEECCCCC--CCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEccC
Confidence            44799999995  455       6799999999999997 5789999999999999999999999854

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.45  E-value=1.5e-13  Score=93.60  Aligned_cols=54  Identities=20%  Similarity=0.162  Sum_probs=50.0

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~  262 (288)
                      +++|+|+|  .+..++||+|.+||+|.|+++.+++||.++ .+|+.||||++||+++
T Consensus         4 ~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            4 IVVAMYDF--QATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             CEEECSCB--CCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             EEEECccC--CCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            68999999  567788999999999999999999999998 5899999999999988

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.45  E-value=1.2e-13  Score=93.38  Aligned_cols=58  Identities=29%  Similarity=0.475  Sum_probs=51.6

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      ..+++|+|+|  .+...+||+|.+||+|.|+++.+++||.|+++|+.||||++||+.++.
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   64 (65)
T 3u23_A            7 KRQCKVLFEY--IPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEV   64 (65)
T ss_dssp             -CEEEECSCB--CCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC-
T ss_pred             CeEEEEeeee--CCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECcC
Confidence            3479999999  567778999999999999999899999999999999999999998753

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.45  E-value=3.9e-14  Score=96.77  Aligned_cols=59  Identities=34%  Similarity=0.521  Sum_probs=53.2

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||++||+.+....
T Consensus         8 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 1wi7_A            8 RRCQVAFSY--LPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGPS   66 (68)
T ss_dssp             CCEEESSCB--CCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCSSC
T ss_pred             CEEEECccC--CcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCCCC
Confidence            469999999  56777799999999999999989999999999999999999999987654

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.8e-13  Score=96.58  Aligned_cols=59  Identities=27%  Similarity=0.364  Sum_probs=52.3

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC--CCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~--~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      +.+++|+|+|  .+..++||+|.+||+|.|+++.+  ++||.++++++.||||++||+.+...
T Consensus        17 ~~~~~al~dy--~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   77 (80)
T 2d8h_A           17 PIEVTALYSF--EGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSGP   77 (80)
T ss_dssp             CEEEECSSCE--ECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCCC
T ss_pred             CEEEEECccC--CcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCCC
Confidence            4579999999  56777799999999999999875  89999999999999999999887543

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.45  E-value=1.1e-13  Score=95.26  Aligned_cols=59  Identities=19%  Similarity=0.126  Sum_probs=51.2

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+.+.++|||.|+  .+|+.|+||++||+.+....
T Consensus         7 ~~~~al~~y--~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~~   67 (71)
T 2fpf_A            7 QTHRAIFRF--VPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEP   67 (71)
T ss_dssp             CCEEECSCB--CCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC---
T ss_pred             eEEEECeeE--CccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCCCC
Confidence            369999999  567777999999999999999999999998  68999999999999986543

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.45  E-value=3.3e-13  Score=93.46  Aligned_cols=59  Identities=32%  Similarity=0.634  Sum_probs=52.7

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.  ++|||.|+++|+.||||++||+.+...
T Consensus         9 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   69 (73)
T 2k9g_A            9 KDYCKVIFPY--EAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPD   69 (73)
T ss_dssp             CEEEEECSCB--CCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             ccEEEECccC--CCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCcc
Confidence            3479999999  5677889999999999999985  899999999999999999999998654

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.45  E-value=2.4e-13  Score=93.73  Aligned_cols=55  Identities=25%  Similarity=0.349  Sum_probs=50.1

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEE
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF  261 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~  261 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.|++.++.||||++||++
T Consensus        17 ~~~~~Alydy--~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           17 ARKVRAIYDF--EAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CEEEEESSCB--CCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             CeEEEECCcc--CCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            4479999999  567778999999999999999899999999999999999999975

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.45  E-value=1.6e-13  Score=95.03  Aligned_cols=57  Identities=23%  Similarity=0.380  Sum_probs=52.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++|+.||||++||+.+.+
T Consensus        14 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (73)
T 3c0c_A           14 PSCKALYDF--EPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVP   70 (73)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             eEEEECccC--CCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCC
Confidence            479999999  567778999999999999999999999999999999999999998865

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=5.7e-14  Score=96.21  Aligned_cols=60  Identities=18%  Similarity=0.226  Sum_probs=53.2

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ...++|+|+|  .+..++||+|.+||+|.|+++ +++||.++++++.||||++||+.+.....
T Consensus         8 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   67 (69)
T 1uhf_A            8 GEEYIALYPY--SSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPS   67 (69)
T ss_dssp             SEEEECSSCB--CCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCCCC
T ss_pred             CCEEEEeeeE--CCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECCCCCC
Confidence            3478999999  567788999999999999998 89999999999999999999999876543

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.5e-13  Score=97.57  Aligned_cols=61  Identities=28%  Similarity=0.288  Sum_probs=54.8

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ...++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||.+||+.+.....
T Consensus        17 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~   77 (88)
T 2cub_A           17 NMPAYVKFNY--MAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPL   77 (88)
T ss_dssp             CEEEEESSCC--CCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCCCCS
T ss_pred             CCEEEEcccc--CCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCCccc
Confidence            4579999999  567788999999999999999999999999999999999999999876653

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.44  E-value=1.6e-13  Score=95.33  Aligned_cols=60  Identities=30%  Similarity=0.427  Sum_probs=52.8

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++ +++||.++++++.||||++||+.+.....
T Consensus        10 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   69 (74)
T 1j3t_A           10 NLKAQALCSW--TAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGSES   69 (74)
T ss_dssp             CCEEEESSCB--CCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCSTT
T ss_pred             CeEEEECCCC--CCCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeEECCCCCC
Confidence            3479999999  567777999999999999999 57999999999999999999999866543

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.44  E-value=2.4e-13  Score=91.27  Aligned_cols=57  Identities=16%  Similarity=0.141  Sum_probs=50.4

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      +.+++|+|+|  .+..++||+|.+||+|.|+++. +++||.++.+|+.||||++||++++
T Consensus         5 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDF--VASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCB--CCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             CEEEEEcceE--CCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            4589999999  5677889999999999999954 5679999999999999999999875

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.44  E-value=2e-13  Score=94.56  Aligned_cols=57  Identities=18%  Similarity=0.257  Sum_probs=51.4

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~  263 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.  +|+.||||++||++++
T Consensus        15 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   73 (73)
T 3h0h_A           15 VTLFVALYDY--EAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD   73 (73)
T ss_dssp             TCEEEESSCB--CCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEEECccC--CCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEECC
Confidence            4479999999  5677789999999999999999999999998  8999999999999864

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.44  E-value=1.7e-13  Score=94.37  Aligned_cols=60  Identities=17%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEe--CCCCeeEEE-eCCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT--NINGQWEGE-LNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~--~~~~w~~~~-~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++  .++|||.++ .+|+.||||++||+.+....+
T Consensus         7 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   69 (71)
T 1u5s_A            7 HVVQTLYPF--SSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   69 (71)
T ss_dssp             SEEEESSCC--CCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSCC
T ss_pred             EEEEEcccC--CCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCCCC
Confidence            379999999  567778999999999999999  689999996 789999999999999876543

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.44  E-value=1.3e-13  Score=93.28  Aligned_cols=55  Identities=15%  Similarity=0.271  Sum_probs=49.7

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--------CeeeEecCCcEEEcC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--------GKTGHFPFTHVEFIP  263 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--------~~~G~~P~~~v~~~~  263 (288)
                      +++|+|+|  .+..++||+|.+||+|.|+++.+++||.++..        ++.||||++||+.++
T Consensus         3 ~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l~   65 (65)
T 2oaw_A            3 LVLALYDY--QEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD   65 (65)
T ss_dssp             EEEECSCB--CCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEECC
T ss_pred             EEEEcccC--CccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEcC
Confidence            68999999  56777899999999999999999999999876        889999999999863

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.44  E-value=1.7e-13  Score=94.62  Aligned_cols=61  Identities=16%  Similarity=0.138  Sum_probs=52.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCCCCCc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++ +++||.++. +|+.||||++||+.+......
T Consensus         7 ~~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   68 (72)
T 2jw4_A            7 EVVVVAKFDY--VAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNSARAA   68 (72)
T ss_dssp             CEEEECSSCC--CCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCCCCSS
T ss_pred             CeEEEECcCC--CcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCCCccc
Confidence            3479999999  567778999999999999998 679999985 899999999999998765543

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.44  E-value=2e-13  Score=90.75  Aligned_cols=55  Identities=22%  Similarity=0.314  Sum_probs=49.6

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEe-CCCCeeEEEe--CCeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NINGQWEGEL--NGKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~-~~~~w~~~~~--~~~~G~~P~~~v~~~  262 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++ .+++||.++.  +++.||||++||+.+
T Consensus         3 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDF--MAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCB--CCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeE--CCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            379999999  567778999999999999998 4899999998  899999999999874

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.44  E-value=1.1e-13  Score=94.73  Aligned_cols=60  Identities=20%  Similarity=0.246  Sum_probs=53.0

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCee-eEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKT-GHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~-G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.+++.+.. ||||++||+.+....
T Consensus         7 ~~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~~~   67 (69)
T 2eqi_A            7 GRTVKALYDY--KAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGPS   67 (69)
T ss_dssp             CCEEEESSCB--CCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCSCS
T ss_pred             CcEEEECeeE--CCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECccCC
Confidence            3479999999  56777899999999999999999999999998776 999999999986543

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.44  E-value=1.8e-13  Score=92.22  Aligned_cols=57  Identities=25%  Similarity=0.313  Sum_probs=50.0

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~  263 (288)
                      +..++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.  +++.||||++||+.+.
T Consensus         6 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~   64 (64)
T 4f14_A            6 LRTYRAMYDY--SAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN   64 (64)
T ss_dssp             --CEEESSCB--CCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC-
T ss_pred             CEEEEECeee--CCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEECc
Confidence            3469999999  5677789999999999999999999999998  8999999999999863

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=1.7e-13  Score=96.48  Aligned_cols=58  Identities=17%  Similarity=0.211  Sum_probs=52.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC----CCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI----NGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~----~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+    ++||.++++++.||||++||+.++..
T Consensus        14 ~~~~Alydy--~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (79)
T 1uhc_A           14 QVYFAVYTF--KARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             CCEEESSCB--CCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             eEEEECccC--CCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCCC
Confidence            379999999  56778899999999999999986    89999999999999999999998654

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.43  E-value=1.3e-13  Score=94.36  Aligned_cols=59  Identities=27%  Similarity=0.341  Sum_probs=53.0

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+++.||||++||+.+....
T Consensus         9 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   67 (69)
T 2dil_A            9 QEYRALYDY--TAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSGPS   67 (69)
T ss_dssp             CEEECCSCB--CCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCCSS
T ss_pred             cEEEECccC--CccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCCCC
Confidence            379999999  56777899999999999999999999999999999999999998876543

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.43  E-value=1.8e-13  Score=91.62  Aligned_cols=56  Identities=25%  Similarity=0.327  Sum_probs=50.4

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++..++.||||++||++-
T Consensus         5 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1uj0_A            5 ARRVRALYDF--EAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD   60 (62)
T ss_dssp             CEEEEESSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEESC
T ss_pred             CeEEEECccC--CCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEEe
Confidence            3479999999  5677789999999999999999999999999999999999999753

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.6e-13  Score=95.45  Aligned_cols=58  Identities=24%  Similarity=0.364  Sum_probs=52.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++ +++||.++.  +++.||||++||+.+.+..
T Consensus        18 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~~~   77 (79)
T 1x6b_A           18 PQVEITKAF--FAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISGPS   77 (79)
T ss_dssp             CEEEESSCC--CCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEESSC
T ss_pred             CEEEECeeE--CCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCCCC
Confidence            479999999  567788999999999999999 999999998  8999999999999987544

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.43  E-value=1.2e-13  Score=95.45  Aligned_cols=60  Identities=20%  Similarity=0.289  Sum_probs=52.8

Q ss_pred             CeEEEEEEcccCCC-CCCCeeeecCCCEEEEEEe-CCCCeeEEEeC--CeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNA-YDKTALKLEIGDIIKVTKT-NINGQWEGELN--GKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~-~~~~eLs~~~g~~v~v~~~-~~~~w~~~~~~--~~~G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|+|  .+ ..++||+|.+||+|.|+++ .+++||.+++.  ++.||||++||+.+....
T Consensus         7 ~~~~~al~dy--~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~~   70 (72)
T 1spk_A            7 GQKVKTIFPH--TAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGPS   70 (72)
T ss_dssp             SCEEECSSCB--CCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSCC
T ss_pred             ceEEEEeeee--CCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCCCC
Confidence            3479999999  54 6778999999999999987 78999999998  999999999999987644

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.43  E-value=3.5e-13  Score=92.21  Aligned_cols=60  Identities=17%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~~~~~  266 (288)
                      ..++|+|+|. .+..++||+|.+||+|.|+++.++|||.++..  |+.||||++||+.+....
T Consensus         3 ~~~~alydy~-~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~~   64 (69)
T 1ruw_A            3 PKFEAAYDFP-GSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTR   64 (69)
T ss_dssp             SEEEESSCBC-CCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCSCS
T ss_pred             cEEEEccccC-CCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCCcc
Confidence            3689999993 15677799999999999999999999999997  999999999999886543

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.5e-13  Score=94.60  Aligned_cols=60  Identities=20%  Similarity=0.245  Sum_probs=54.3

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.+++||.+++.++.||||++||+.+....+
T Consensus         9 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   68 (71)
T 2dnu_A            9 EKYVTVQPY--TSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSGP   68 (71)
T ss_dssp             EEEECSSCB--CCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCCCCS
T ss_pred             CEEEECCcc--CCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccCCCC
Confidence            479999999  567788999999999999999899999999999999999999999976554

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.43  E-value=4e-13  Score=94.04  Aligned_cols=61  Identities=33%  Similarity=0.413  Sum_probs=53.4

Q ss_pred             CeEEEEEEcccCCCC-CCCeeeecCCCEEEEEEeC-CCCeeEEE-eCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAY-DKTALKLEIGDIIKVTKTN-INGQWEGE-LNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~-~~~eLs~~~g~~v~v~~~~-~~~w~~~~-~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|+|+|  .+. .++||+|.+||+|.|+++. +++||.++ .+|+.||||++||+.+.....
T Consensus         9 ~~~~~al~dy--~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~~~   72 (77)
T 2enm_A            9 ATKARVMYDF--AAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGK   72 (77)
T ss_dssp             CEEEEESSCC--CCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCCCC
T ss_pred             CcEEEECccC--CCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCCCC
Confidence            3579999999  556 7789999999999999985 79999998 789999999999999976544

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.43  E-value=1.7e-13  Score=93.15  Aligned_cols=59  Identities=15%  Similarity=0.137  Sum_probs=48.8

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      .+++|+|||  .+..++||+|.+||+|.|+++ +++||.++ .+|+.||||++||+.+....+
T Consensus         5 ~~~~Alydy--~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~~g~~G~~Psnyv~~~~~~~~   64 (67)
T 2b86_A            5 VIVIAKWDY--TAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVERKLEHHH   64 (67)
T ss_dssp             EEEEESSCB--CCSSTTSCCBCTTCEEEEEEC-SSSSCEEECTTSCEEECCCCSEEEC-----
T ss_pred             eEEEEeeeE--CCCCCCccccCCCCEEEEEec-CCCeEEEEeCCCCEEEeChHHEeEcCCCCC
Confidence            479999999  567788999999999999998 57999998 579999999999998876543

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.42  E-value=1.9e-13  Score=96.07  Aligned_cols=60  Identities=15%  Similarity=0.233  Sum_probs=50.9

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~  267 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.++|||.|+.  +|+.||||++||+.+.....
T Consensus         6 ~~~~Alydy--~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   67 (79)
T 3cqt_A            6 TLFEALYDY--EARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLDY   67 (79)
T ss_dssp             CCEEESSCB--CCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC-----
T ss_pred             cEEEECccC--CCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCcccc
Confidence            369999999  5677789999999999999999999999998  89999999999999875544

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.42  E-value=2.4e-13  Score=92.79  Aligned_cols=58  Identities=17%  Similarity=0.182  Sum_probs=51.6

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~~  265 (288)
                      +.+++|+|+|  .+..++||+|.+||+|.|+++ +++||.++ .+++.||||++||+.+...
T Consensus         7 ~~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wxt_A            7 GLKMQVLYEF--EARNPRELTVVQGEKLEVLDH-SKRWWLVKNEAGRSGYIPSNILEPLSGP   65 (68)
T ss_dssp             CEEEEESSCB--CCCSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEEGGGEECCCCS
T ss_pred             CeEEEECceE--CCCCcCcCCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEhHHcEECCCC
Confidence            4579999999  567788999999999999999 58999998 7899999999999988653

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.9e-13  Score=95.89  Aligned_cols=61  Identities=16%  Similarity=0.234  Sum_probs=53.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEEeC-CeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELN-GKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~~~-~~~G~~P~~~v~~~~~~~~  267 (288)
                      +..++|+|+|  .+..++||+|.+||+|.|+++.+ ++||.++.. ++.||||++||+.+....+
T Consensus        13 ~~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   75 (78)
T 2dl5_A           13 PLTCKVVYSY--KASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSSGP   75 (78)
T ss_dssp             SEEEEECSCB--CCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCCCCS
T ss_pred             CcEEEEceeE--CCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCCCCC
Confidence            5689999999  56777899999999999999975 899999987 9999999999998865544

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=3.5e-13  Score=92.47  Aligned_cols=60  Identities=22%  Similarity=0.212  Sum_probs=53.0

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~~~~~  266 (288)
                      ...++|+|+|  .+..++||+|.+||+|.|+++.+++||.++..  ++.||||++||+++....
T Consensus         7 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~~   68 (70)
T 2ct3_A            7 GTPYRAMYQY--RPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGPS   68 (70)
T ss_dssp             CEEEEESSCB--CCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTCSC
T ss_pred             CcEEEECccC--CcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCCCC
Confidence            3479999999  56777899999999999999999999999885  899999999999987643

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.2e-13  Score=94.92  Aligned_cols=59  Identities=20%  Similarity=0.294  Sum_probs=53.5

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.+++.||||++||+.+....+
T Consensus        10 ~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   68 (70)
T 2ega_A           10 QYVVVSNY--KKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGPS   68 (70)
T ss_dssp             CEECCSCC--CCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCCCCC
T ss_pred             EEEECceE--CCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCCCCC
Confidence            58999999  567788999999999999999999999999999999999999999876543

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=2.2e-13  Score=94.32  Aligned_cols=59  Identities=32%  Similarity=0.434  Sum_probs=52.2

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.  +++||.++++++.||||++||+.+....
T Consensus         8 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   68 (73)
T 2dm1_A            8 GTAVARYNF--AARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQS   68 (73)
T ss_dssp             SEEEESSCB--CCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCCCC
T ss_pred             CEEEECccC--CcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCCCC
Confidence            379999999  5677889999999999999987  4499999999999999999999986543

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.42  E-value=9.6e-14  Score=95.90  Aligned_cols=58  Identities=29%  Similarity=0.389  Sum_probs=51.7

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEe-CCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~-~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      +++|+|+|  .+..++||+|.+||+|.|+++ .+++||.++++|+.||||++||+.+....
T Consensus        12 ~~~alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   70 (72)
T 1ugv_A           12 KAKALYAC--KAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGPS   70 (72)
T ss_dssp             CEEESSCB--CCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSSC
T ss_pred             EEEEcccc--CCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCCCC
Confidence            69999999  567778999999999999874 68899999999999999999999986543

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.42  E-value=9e-13  Score=94.23  Aligned_cols=57  Identities=18%  Similarity=0.228  Sum_probs=51.2

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  264 (288)
                      ..+++|+|+|  .+...+||+|.+||+|.|+++. ++||.+++  +|+.||||++||+.++.
T Consensus        25 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~   83 (86)
T 2oi3_A           25 DIIVVALYDY--EAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   83 (86)
T ss_dssp             SEEEEESSCC--CCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGG
T ss_pred             CcEEEECccC--CCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEccc
Confidence            4589999999  5677789999999999999998 69999999  89999999999999854

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.42  E-value=2.8e-13  Score=96.40  Aligned_cols=62  Identities=19%  Similarity=0.210  Sum_probs=54.2

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCCCCCc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      +.+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.  +|+.||||++||+.+.....+
T Consensus         6 ~~~~~Alydy--~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~e   69 (84)
T 4ag1_C            6 VTLFVALYDY--NATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQGE   69 (84)
T ss_dssp             CCEEEESSCB--CCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTCC--
T ss_pred             CEEEEEcccC--CCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCcccc
Confidence            4479999999  5677779999999999999999999999998  899999999999998776554

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.42  E-value=5.6e-13  Score=96.38  Aligned_cols=61  Identities=16%  Similarity=0.258  Sum_probs=53.9

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEe--CCCCeeEEE-eCCeeeEecCCcEEEcCCCCCc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT--NINGQWEGE-LNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~--~~~~w~~~~-~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      .+++|+|+|  .+...+||+|.+||+|.|+++  .+++||.++ ++++.||||.+||+.+....+.
T Consensus        18 ~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   81 (91)
T 1wx6_A           18 HVVQTLYPF--SSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL   81 (91)
T ss_dssp             EEEEESSCC--CCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEESSSC
T ss_pred             EEEEEeecC--CcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCcCCC
Confidence            479999999  567778999999999999999  688999998 6899999999999999766543

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=5.3e-13  Score=92.87  Aligned_cols=58  Identities=16%  Similarity=0.122  Sum_probs=51.1

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe----CCeeeEecCCcEEEcCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL----NGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~----~~~~G~~P~~~v~~~~~~  265 (288)
                      ..+++|+|+|.  +. ++||+|.+||+|.|+++.+++||.+++    +++.||||++||+.+...
T Consensus        10 ~~~~~alydy~--~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~~   71 (75)
T 2egc_A           10 KDVYVSIADYE--GD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSG   71 (75)
T ss_dssp             CEEEEECSCBC--CC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCSC
T ss_pred             CeEEEECCCcC--CC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCCC
Confidence            34799999994  56 779999999999999999999999988    468999999999998753

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.42  E-value=1.6e-13  Score=93.33  Aligned_cols=57  Identities=23%  Similarity=0.320  Sum_probs=50.7

Q ss_pred             CeEEEEEEcccCCC-CCCCeeeecCCCEEEEEEe-CCCCeeEEEeC--CeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNA-YDKTALKLEIGDIIKVTKT-NINGQWEGELN--GKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~-~~~~eLs~~~g~~v~v~~~-~~~~w~~~~~~--~~~G~~P~~~v~~~~  263 (288)
                      ...++|+|+|  .+ ..++||+|.+||+|.|+++ .+++||.|++.  ++.||||++||+.+.
T Consensus         6 ~~~~~al~dy--~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            6 KQKVKTIFPH--TAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCEEEESSCB--CCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CEEEEEeecC--CCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            3479999999  54 6777999999999999986 78999999987  899999999999875

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.42  E-value=2.5e-13  Score=89.96  Aligned_cols=55  Identities=25%  Similarity=0.259  Sum_probs=49.7

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCcEEEcC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIP  263 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~~  263 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++.++|||.++..  ++.||||++||+.++
T Consensus         3 ~~~al~d~--~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   59 (59)
T 1yn8_A            3 RAVALYDF--EPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ   59 (59)
T ss_dssp             EEEECSCB--CCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEECC
T ss_pred             EEEECccC--CCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            68999999  56777899999999999999999999999885  799999999999864

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.42  E-value=3.1e-13  Score=92.48  Aligned_cols=57  Identities=26%  Similarity=0.361  Sum_probs=51.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~  264 (288)
                      ..++|+|+|  .+...+||+|.+||+|.|+++.+++||.++. +|+.||||++||+++..
T Consensus         7 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (69)
T 4esr_A            7 PTVVALYDY--TANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETL   64 (69)
T ss_dssp             CEEEESSCB--CCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHHH
T ss_pred             CEEEECccC--CCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECcc
Confidence            379999999  5677789999999999999999999999988 89999999999998753

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=8.8e-13  Score=96.46  Aligned_cols=62  Identities=21%  Similarity=0.272  Sum_probs=52.7

Q ss_pred             CeEEEEEEcccCCCC--------CCCeeeecCCCEEEEEEe-CCCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         205 PAFARVKQVRVPNAY--------DKTALKLEIGDIIKVTKT-NINGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~--------~~~eLs~~~g~~v~v~~~-~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      ..+++|+|+|.  +.        ..+||+|.+||+|.|+.+ .++|||.++++|+.||||++||+.+....+.
T Consensus        17 ~~~~~Alydy~--~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~   87 (97)
T 2csq_A           17 ARIFVALFDYD--PLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQADDEE   87 (97)
T ss_dssp             CEEEECSSCBC--TTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCCCSCC
T ss_pred             ceEEEEccccC--CCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCCCchh
Confidence            34789999995  45        567999999999999965 5578999999999999999999999765543

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.41  E-value=2e-13  Score=88.73  Aligned_cols=52  Identities=25%  Similarity=0.347  Sum_probs=47.0

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEEeCCeeeEecCCcEE
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELNGKTGHFPFTHVE  260 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~~~~~~G~~P~~~v~  260 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++.+ ++||.++.+++.||||++||+
T Consensus         2 ~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAY--EAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCB--CCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccC--CcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            47899999  56777899999999999999985 799999999999999999984

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.41  E-value=1.7e-13  Score=93.55  Aligned_cols=54  Identities=24%  Similarity=0.428  Sum_probs=48.6

Q ss_pred             EEEEEEcccCCCCCCC-eeeecCCCEEEEEEeCC-----CCeeEEEe-CCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKT-ALKLEIGDIIKVTKTNI-----NGQWEGEL-NGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~-eLs~~~g~~v~v~~~~~-----~~w~~~~~-~~~~G~~P~~~v~~~  262 (288)
                      +++|+|+|  .++.++ ||+|.+||+|.|+++.+     ++||.++. +|+.||||++||+.+
T Consensus         9 ~~~aly~y--~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            9 FARALYDF--VPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             CEEECSCC--CCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             EEEEEecc--cCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            68999999  567777 99999999999999876     49999999 799999999999874

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.41  E-value=2.7e-13  Score=93.10  Aligned_cols=59  Identities=24%  Similarity=0.340  Sum_probs=52.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCC--eeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~--~~G~~P~~~v~~~~~~~  266 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.+++||.++..+  +.||||++||+.+....
T Consensus         8 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   68 (70)
T 2ecz_A            8 GEAIAKFNF--NGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGPS   68 (70)
T ss_dssp             BCEEESSCC--CCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSSCC
T ss_pred             CEEEECccC--CCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCCCC
Confidence            369999999  567778999999999999999899999999976  99999999999986543

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=5.1e-13  Score=96.37  Aligned_cols=59  Identities=19%  Similarity=0.255  Sum_probs=53.0

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~~~~~  266 (288)
                      ..++|+|+|  .+...+||+|.+||+|.|+++.+++||.|++.  ++.||||++||+.+....
T Consensus        18 ~~~~alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~~~   78 (90)
T 2yup_A           18 GEAVAQYTF--KGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPR   78 (90)
T ss_dssp             EEEEECSCC--CCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEECCC
T ss_pred             eEEEEeecC--CcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCCCc
Confidence            468999999  56778899999999999999989999999997  899999999999997654

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.41  E-value=8.8e-14  Score=100.62  Aligned_cols=61  Identities=33%  Similarity=0.509  Sum_probs=54.7

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.++|||.|+++|+.||||++||+.+.....
T Consensus        18 ~~~~~Alydy--~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~~~   78 (92)
T 2o2o_A           18 RRRCQVAFSY--LPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESD   78 (92)
T ss_dssp             SCEEEECSCB--CCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSCSS
T ss_pred             CeEEEEcccc--CCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCCCc
Confidence            4479999999  567778999999999999999899999999999999999999999876554

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.41  E-value=3.4e-13  Score=91.74  Aligned_cols=57  Identities=25%  Similarity=0.355  Sum_probs=51.1

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCC--eeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~--~~G~~P~~~v~~~~~  264 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.+++||.+++.+  +.||||++||+.+..
T Consensus         7 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            7 GEAIAKFNF--NGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             EEEEECSCB--CCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             EEEEECccC--CcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECCC
Confidence            368999999  567778999999999999999999999999976  999999999998753

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.41  E-value=1.9e-13  Score=93.80  Aligned_cols=59  Identities=25%  Similarity=0.291  Sum_probs=52.7

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++  .+++.||||++||+++....
T Consensus         8 ~~~~al~~y--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   68 (70)
T 2cuc_A            8 NMFVALHTY--SAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGPS   68 (70)
T ss_dssp             CCEECCSCB--CCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCTT
T ss_pred             cEEEECeeE--CcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcCCC
Confidence            379999999  567778999999999999999899999999  68999999999999987643

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.41  E-value=3.4e-13  Score=92.83  Aligned_cols=56  Identities=16%  Similarity=0.167  Sum_probs=49.0

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEE-eCCCCeeEEE-eCCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTK-TNINGQWEGE-LNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~-~~~~~w~~~~-~~~~~G~~P~~~v~~~~  263 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|++ ..++|||.|+ .+|+.||||++||+..+
T Consensus        12 ~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   69 (71)
T 1csk_A           12 TECIAKYNF--HGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE   69 (71)
T ss_dssp             EEEEESSCB--CCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC--
T ss_pred             CEEEEceeE--CcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEcc
Confidence            469999999  56777899999999999999 6789999998 68999999999998764

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.40  E-value=8.1e-14  Score=97.33  Aligned_cols=60  Identities=35%  Similarity=0.542  Sum_probs=53.6

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|+|  .+...+||+|.+||+|.|+++.+++||.++++++.||||++||+.+....
T Consensus        10 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (76)
T 1ujy_A           10 QLIVKARFNF--KQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSE   69 (76)
T ss_dssp             CEEEECCSCB--CCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCHHH
T ss_pred             CEEEEECccC--CcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECCccC
Confidence            4479999999  56777899999999999999989999999999999999999999986543

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.40  E-value=4.2e-13  Score=97.99  Aligned_cols=61  Identities=28%  Similarity=0.512  Sum_probs=53.1

Q ss_pred             CeEEEEEEcccCCCCC------CCeeeecCCCEEEEE-EeCCCCeeEEEe-CCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYD------KTALKLEIGDIIKVT-KTNINGQWEGEL-NGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~------~~eLs~~~g~~v~v~-~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|+|+|.  +..      .+||+|.+||+|.|+ ++.++|||.+++ +|+.||||++||+.+.....
T Consensus        17 ~~~~~Alydy~--~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~~~   85 (96)
T 1wie_A           17 VHLCVARYSYN--PFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNES   85 (96)
T ss_dssp             EEEEEESSCCC--GGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCCC
T ss_pred             CcEEEECCccC--CCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCCCCc
Confidence            34799999995  444      679999999999999 788999999999 89999999999999876554

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.40  E-value=2.1e-13  Score=94.40  Aligned_cols=55  Identities=20%  Similarity=0.331  Sum_probs=50.3

Q ss_pred             EEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       208 ~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      ++|+|+|.  + .++||+|.+||+|.|+++.+++||.|+.+|+.||||++||+.+...
T Consensus         3 a~alydy~--~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   57 (73)
T 2kxd_A            3 APPLPPYS--A-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   57 (73)
T ss_dssp             CCCCCSSC--C-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             EEEeeeeC--C-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCCC
Confidence            67899994  5 6789999999999999999999999999999999999999998654

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.4e-13  Score=94.82  Aligned_cols=57  Identities=16%  Similarity=0.043  Sum_probs=51.3

Q ss_pred             eEEEEEEcccCCC-CCCCeeeecCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNA-YDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~-~~~~eLs~~~g~~v~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~~  264 (288)
                      ..++|+|+|  .+ ..++||+|.+||+|.|+++.+++||.++  .+++.|+||++||+.+..
T Consensus         8 ~~~~Alydy--~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            8 RRVRAILPY--TKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCEEESSCC--CCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CEEEECccc--CCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            369999999  56 6778999999999999999999999998  679999999999999854

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.40  E-value=3.6e-13  Score=90.13  Aligned_cols=55  Identities=16%  Similarity=0.369  Sum_probs=48.5

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCcEEEc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFI  262 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~  262 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++. ++||.++  .+|+.||||++||+++
T Consensus         6 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            6 DNLVIALHSY--EPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TCEEEESSCB--CCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEcccC--CCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            3479999999  5677789999999999999995 5999998  5899999999999874

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.40  E-value=3e-13  Score=92.26  Aligned_cols=56  Identities=21%  Similarity=0.242  Sum_probs=50.8

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~  263 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.++|||.++ .+|+.||||++||+.++
T Consensus        11 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           11 EEYIAVGDF--TAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             EEEEECSCB--CCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CEEEEcccC--CCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            368999999  567778999999999999999899999998 78999999999999875

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=2.4e-13  Score=94.94  Aligned_cols=59  Identities=25%  Similarity=0.260  Sum_probs=51.2

Q ss_pred             CeEEEEEEcccCCCCC-------CCeeeecCCCEEEEEEeCC-CCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         205 PAFARVKQVRVPNAYD-------KTALKLEIGDIIKVTKTNI-NGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~-------~~eLs~~~g~~v~v~~~~~-~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      ..+++|+|+|.  +..       .+||+|.+||+|.|+++.+ +|||.++++++.||||++||+.+...
T Consensus         7 ~~~~~Al~dy~--~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   73 (76)
T 2csi_A            7 GRRMVALYDYD--PRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVSGP   73 (76)
T ss_dssp             SEEEECSSCCC--TTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCCCC
T ss_pred             ccEEEEcccCC--CCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECCCC
Confidence            34799999995  455       7799999999999999876 48999999999999999999988654

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.40  E-value=7.4e-13  Score=89.46  Aligned_cols=58  Identities=57%  Similarity=1.052  Sum_probs=53.3

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ..++|+++|.++..++|+|++||+|.|+++.+++||.+++.+|+.|+||++||+....
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   61 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH   61 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC-
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecCC
Confidence            4689999999999999999999999999998899999997789999999999987764

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.40  E-value=2.2e-13  Score=90.58  Aligned_cols=55  Identities=18%  Similarity=0.346  Sum_probs=49.8

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~  264 (288)
                      +++|+|+|  .+..++||+|.+||+|.|+++ +++||.++ .+|+.||||++||+.+..
T Consensus         3 ~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            3 YAKSKYDF--VARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             EEEESSCB--CCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEEECccC--CCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            78999999  567778999999999999999 99999997 579999999999999865

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.40  E-value=6.8e-13  Score=87.21  Aligned_cols=56  Identities=59%  Similarity=1.089  Sum_probs=51.4

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.+...++|+|++||+|.|+++.+++||.+++.+|+.|+||++||+++
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            35889999999999999999999999999988999999988899999999999763

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.39  E-value=2e-13  Score=95.51  Aligned_cols=73  Identities=21%  Similarity=0.440  Sum_probs=61.7

Q ss_pred             CCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccccccCCCCCCCCCCCCCCCcccccccc
Q psy5076         121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHL  200 (288)
Q Consensus       121 ~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (288)
                      ++..++|+|++||+|.|+.+.+++||.++ .+|+.||||++||+.+.....                             
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~~~-----------------------------   51 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSGTG-----------------------------   51 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEE-ETTEEECCCGGGEEECCCSSC-----------------------------
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEE-ECCcEEEEEeeEEEEcCCCCC-----------------------------
Confidence            46789999999999999999889999998 789999999999998754211                             


Q ss_pred             CCCCCeEEEEEEcccCCCCCCCeeeecCC
Q psy5076         201 EVKLPAFARVKQVRVPNAYDKTALKLEIG  229 (288)
Q Consensus       201 ~~~~~~~~~~l~~~~~~~~~~~eLs~~~g  229 (288)
                          ...++|+|||  .++..+||+|.+.
T Consensus        52 ----~~~~~alydy--~a~~~dElsf~~~   74 (77)
T 2jmc_A           52 ----KELVLALYDY--QESGDNAPSYSPP   74 (77)
T ss_dssp             ----CCEEEESSCC--CCSSCCCCCSCCC
T ss_pred             ----CceEEECCCc--CCCCCCccccCCC
Confidence                2379999999  6788889999864

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.39  E-value=2e-13  Score=101.51  Aligned_cols=61  Identities=25%  Similarity=0.282  Sum_probs=52.0

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEe-CCCC--eeEEEeC--------CeeeEecCCcEEEcCCCCCc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NING--QWEGELN--------GKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~-~~~~--w~~~~~~--------~~~G~~P~~~v~~~~~~~~~  268 (288)
                      ..++|+|+|  .+..++||+|++||+|.|+++ .++|  ||.|++.        |+.||||+|||+.+....++
T Consensus        23 ~~~~Alydy--~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~~~~   94 (108)
T 1i1j_A           23 SMAVALQDY--MAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPG   94 (108)
T ss_dssp             EEEEESSCB--CCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECSCC
T ss_pred             eEEEECCcc--CCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccccCcc
Confidence            369999999  667888999999999999998 3444  9999987        89999999999998755543

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.4e-12  Score=93.02  Aligned_cols=58  Identities=16%  Similarity=0.110  Sum_probs=51.9

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~~  265 (288)
                      .+++|+|+|  .+...+||+|.+||+|.|+++.+++||.++ .+|+.||||++||+.+..+
T Consensus        20 ~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~   78 (85)
T 2yuq_A           20 TVVIALYDY--QTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSPN   78 (85)
T ss_dssp             CEEEESSCC--CCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECCCC
T ss_pred             eEEEECcCC--CCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEccCC
Confidence            479999999  567788999999999999999999999996 5899999999999998544

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.39  E-value=7.1e-13  Score=92.70  Aligned_cols=59  Identities=20%  Similarity=0.202  Sum_probs=52.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC---Cee------eEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN---GKT------GHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~---~~~------G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++..   ++.      ||||++||+++....
T Consensus         8 ~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~~~   75 (77)
T 2d8j_A            8 QYFVALFDY--QARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSGPS   75 (77)
T ss_dssp             EEEEESSCB--CCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCCCC
T ss_pred             CEEEEccCC--CCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCCcC
Confidence            479999999  56777899999999999999999999999887   888      999999999987543

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.39  E-value=3.3e-13  Score=89.05  Aligned_cols=52  Identities=21%  Similarity=0.238  Sum_probs=47.3

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEEe--CCeeeEecCCcEE
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHVE  260 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~~--~~~~G~~P~~~v~  260 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++.+ ++||.++.  +|+.||||++||+
T Consensus         3 ~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAY--VQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCB--CCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEEeeeE--CCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            47899999  56777899999999999999987 79999999  8999999999996

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.39  E-value=6.6e-14  Score=104.08  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=59.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCee---eEecCCcEEEcCCCCCccCCCCCCccccCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKT---GHFPFTHVEFIPTNETSVETNGNGDIHNST  281 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~---G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~  281 (288)
                      ..+++|+|||  .+..++||+|.+||+|.|+++.+++||.++++++.   |+||++||+.+........   ..+....+
T Consensus         5 ~~~~~Alydy--~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~~~~~~~---~~~~~~~~   79 (108)
T 2rqv_A            5 SLYAIVLYDF--KAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATGYAT---GNDVIEDI   79 (108)
T ss_dssp             CCCEEESSCC--CCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCSSSSCCC---SCCHHHHH
T ss_pred             CeEEEECCCc--CCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecCCCCccc---chhHHHHH
Confidence            3479999999  67888899999999999999889999999987766   9999999998865444332   23333444


Q ss_pred             CCCCCC
Q psy5076         282 PKTETP  287 (288)
Q Consensus       282 ~~~~~p  287 (288)
                      .+...|
T Consensus        80 ~~~~~p   85 (108)
T 2rqv_A           80 KSVNLP   85 (108)
T ss_dssp             TTTTCC
T ss_pred             HhcCCC
Confidence            444444

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.38  E-value=3e-13  Score=89.87  Aligned_cols=54  Identities=24%  Similarity=0.343  Sum_probs=47.4

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEEeC-CeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELN-GKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~~~-~~~G~~P~~~v~~~  262 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++.+ ++||.+++. |+.||||++||+.+
T Consensus         5 ~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            5 RVRALYDY--DGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             EEEECSCB--CCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             EEEECccc--CccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            68999999  56777899999999999998864 599999998 99999999999864

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.38  E-value=3e-13  Score=92.05  Aligned_cols=57  Identities=23%  Similarity=0.328  Sum_probs=48.0

Q ss_pred             CeEEEEEEcccCCCCCCCe-eeecCCCEEEEEEe-CCCCeeEEE--eCCeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTA-LKLEIGDIIKVTKT-NINGQWEGE--LNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~e-Ls~~~g~~v~v~~~-~~~~w~~~~--~~~~~G~~P~~~v~~~~  263 (288)
                      ..+++|+|+|.  +...++ |+|.+||+|.|+.. .++|||.|+  .+|+.||||++||+.++
T Consensus         7 ~~~~~al~dy~--~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l~   67 (67)
T 3rnj_A            7 RMRVKAIFSHA--AGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLD   67 (67)
T ss_dssp             CCEEEESSCBC--CCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CeEEEEccccC--CCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEECc
Confidence            34799999994  555455 99999999999954 688999998  67999999999999863

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.38  E-value=5.2e-13  Score=95.91  Aligned_cols=54  Identities=28%  Similarity=0.404  Sum_probs=49.0

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-----CCCeeEEEe-CCeeeEecCCcEEE
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-----INGQWEGEL-NGKTGHFPFTHVEF  261 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-----~~~w~~~~~-~~~~G~~P~~~v~~  261 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.     ++|||.|+. +|+.||||++||++
T Consensus        30 ~~~~Alydy--~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           30 PVWTAVFDY--EAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CEEEECSCB--CCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             cEEEECCcc--CCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            479999999  5677789999999999999985     899999999 89999999999974

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.38  E-value=9.6e-13  Score=86.82  Aligned_cols=55  Identities=25%  Similarity=0.678  Sum_probs=51.4

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      .++|+++|.++..++|+|++||+|.|+.+.+++||.|+ .+|+.|+||++||+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQ-INGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEE-ETTEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEE-ECCeEEEEehHHeEEcC
Confidence            47899999999999999999999999999889999999 58999999999998865

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.38  E-value=1.1e-12  Score=88.62  Aligned_cols=58  Identities=24%  Similarity=0.569  Sum_probs=53.6

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+++|.++..++|+|++||+|.|+++.+++||.|+ .+|+.|+||++||+.+...
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~fP~~yv~~~~~~   59 (65)
T 2nwm_A            2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGE-HHGRLGIFPANYVEVLPLE   59 (65)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEE-ETTEEEEECGGGEEECCCC
T ss_pred             cEEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEE-ECCcEEEEehhhEEEcCCC
Confidence            358899999999999999999999999999889999999 7899999999999987754

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.37  E-value=1.3e-12  Score=87.32  Aligned_cols=57  Identities=26%  Similarity=0.461  Sum_probs=52.7

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~  167 (288)
                      +.++|+++|.++..+||+|++||+|.|+...+++||.|++ .+|+.|+||++||+++.
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            4689999999999999999999999999998899999997 78999999999998764

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.37  E-value=9.4e-13  Score=88.09  Aligned_cols=57  Identities=32%  Similarity=0.666  Sum_probs=52.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      ...++|+++|.+...++|+|++||+|.|++..+++||.|+ .+|+.|+||++||+.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGE-SKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEE-CSSCEEEECGGGCCCSC
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEE-ECCcEEEEeHHHEEECC
Confidence            4578999999999999999999999999999889999999 78999999999998764

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.37  E-value=4.8e-13  Score=92.85  Aligned_cols=56  Identities=32%  Similarity=0.405  Sum_probs=50.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++. +.+||.++++|+.||||++||+.+.
T Consensus        10 ~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A           10 MEAIAKYDF--KATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             eEEEECccC--CCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcC
Confidence            369999999  5677789999999999999987 6799999999999999999999764

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.37  E-value=4.1e-13  Score=95.22  Aligned_cols=58  Identities=31%  Similarity=0.512  Sum_probs=50.5

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC------CeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN------GKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~------~~~G~~P~~~v~~~~  263 (288)
                      ..+++|+|+|. .+.+++||+|.+||+|.|+++.+++||.|++.      ++.||||++||+.+.
T Consensus        18 ~~~~~Alydy~-~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           18 SLKVRALKDFW-NLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             CEEEEESSCBC-CCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CeEEEEccccC-CCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            45799999992 24667799999999999999999999999985      689999999999875

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.37  E-value=1.6e-12  Score=86.38  Aligned_cols=55  Identities=36%  Similarity=0.748  Sum_probs=51.3

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.++..++|+|++||+|.|+++.+++||.+++ +++.|+||++||+.+
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            6 PQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRL-RGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE-CCEEEEEcHHHEEEC
Confidence            5689999999999999999999999999998899999995 899999999999864

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=2.1e-12  Score=88.00  Aligned_cols=59  Identities=27%  Similarity=0.629  Sum_probs=54.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.++ .+++.|+||++||+.+..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGK-IQDRIGFFPANFVQRLSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEE-CSSCEEEEETTTEEECCCC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEE-ECCcEEEEehHHeEECCCC
Confidence            3568999999999999999999999999998889999999 7899999999999988754

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.1e-12  Score=95.33  Aligned_cols=60  Identities=18%  Similarity=0.169  Sum_probs=52.4

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--C--CCeeEEE--eCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--I--NGQWEGE--LNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~--~~w~~~~--~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.  +  +|||.|+  .+|+.|+||++||+.+....
T Consensus        16 ~~~~~Alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~~   81 (94)
T 2e5k_A           16 HETLQVIYPY--TPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECS   81 (94)
T ss_dssp             CEEEEECSCB--CCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCSCC
T ss_pred             CeEEEECCcC--CCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcccCC
Confidence            3579999999  5677889999999999999883  4  8999999  78999999999999987544

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.36  E-value=1.9e-12  Score=86.63  Aligned_cols=61  Identities=20%  Similarity=0.373  Sum_probs=50.7

Q ss_pred             CcEEEEeCCCeEecccCCcccccccCCCCCCCCCCCCCCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEE
Q psy5076         153 GEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDII  232 (288)
Q Consensus       153 g~~G~vP~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v  232 (288)
                      |+.||||++|++.......                                 ..+++|+|+|  .+..++||+|.+||+|
T Consensus         2 g~~G~~P~~yv~~~~~~~~---------------------------------~~~~~alydy--~a~~~~eLsf~~Gd~i   46 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDSGTG---------------------------------KELVLALYDY--QEKSPREVTMKKGDIL   46 (62)
T ss_dssp             CEEEEEEGGGEEECCCCSS---------------------------------SCEEEECSCB--CCSSTTBCCBCTTCEE
T ss_pred             CCccccccceEeecCCCCC---------------------------------ceEEEEeeeE--CCCCCCccCCCCCCEE
Confidence            6899999999986543210                                 2379999999  5677889999999999


Q ss_pred             EEEEeCCCCeeEEEeC
Q psy5076         233 KVTKTNINGQWEGELN  248 (288)
Q Consensus       233 ~v~~~~~~~w~~~~~~  248 (288)
                      .|+++.+++||.++++
T Consensus        47 ~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A           47 TLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             EEEECCSSSEEEEEEC
T ss_pred             EEEEecCCCEEEEEeC
Confidence            9999999999999864

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.36  E-value=1.6e-12  Score=88.67  Aligned_cols=59  Identities=29%  Similarity=0.566  Sum_probs=53.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.|+ .+|+.|+||++||+.+...
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGM-IHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEE-ETTEEEEEEGGGEEESCC-
T ss_pred             CCEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEE-ECCcEEEeeHHHEEEcCcc
Confidence            3468999999999999999999999999999889999999 5899999999999987654

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.36  E-value=1.5e-12  Score=85.88  Aligned_cols=56  Identities=27%  Similarity=0.610  Sum_probs=51.6

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      ..++|+++|.++..++|+|++||+|.|++..+++||.|+. +|+.|+||++||+.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL-HNKLGLFPANYVAPMM   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEECC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEE-CCeEEEeeHHHeEEcc
Confidence            3588999999999999999999999999998899999994 8999999999998764

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.36  E-value=7.8e-13  Score=89.31  Aligned_cols=58  Identities=21%  Similarity=0.529  Sum_probs=53.3

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+++|.++..++|+|++||+|.|+++.+++||.|+ .+|+.|+||++||+.+...
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~~   59 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVKELELE   59 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEE-SSSCEEEEETTTSCBCCCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEE-ECCcEEEecHHHEEEcCCC
Confidence            368999999999999999999999999998889999999 7899999999999887654

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.36  E-value=1.6e-12  Score=86.34  Aligned_cols=55  Identities=27%  Similarity=0.626  Sum_probs=51.5

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.++..++|+|++||+|.|++..+++||.|+ .+|+.|+||++||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEE-ECCCEEEechHHEEEC
Confidence            468999999999999999999999999999889999999 6899999999999876

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.36  E-value=2.1e-12  Score=85.15  Aligned_cols=56  Identities=39%  Similarity=0.719  Sum_probs=51.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++. +++.|+||++||+.+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL-NGKRGWVPANYVQDI   58 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE-CCcEEEEeHHHEEEC
Confidence            35689999999999999999999999999998899999995 899999999999864

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=2.2e-12  Score=87.91  Aligned_cols=59  Identities=22%  Similarity=0.424  Sum_probs=54.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.+. .+++.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVM-FNGQKGLVPCNYLEPVSGP   65 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEE-ETTEEEEECSTTEEECCCS
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEE-eCCCEEEeehHHeEECCCC
Confidence            4679999999999999999999999999999889999997 7899999999999988653

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.36  E-value=7.2e-13  Score=93.38  Aligned_cols=58  Identities=22%  Similarity=0.370  Sum_probs=51.0

Q ss_pred             CeEEEEEEcccCCCCCCC-eeeecCCCEEEEEEeCCC-----CeeEEEe-CCeeeEecCCcEEEcCC
Q psy5076         205 PAFARVKQVRVPNAYDKT-ALKLEIGDIIKVTKTNIN-----GQWEGEL-NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~-eLs~~~g~~v~v~~~~~~-----~w~~~~~-~~~~G~~P~~~v~~~~~  264 (288)
                      ..+++|+|+|  .+..++ ||+|.+||+|.|+++.+.     +||.++. +|+.||||++||+.+..
T Consensus        14 ~~~~~alydy--~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   78 (80)
T 2v1r_A           14 LEFARALYDF--VPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR   78 (80)
T ss_dssp             CEEEEESSCB--CCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC--
T ss_pred             CEEEEECccC--CCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCC
Confidence            3479999999  667888 999999999999999876     9999998 79999999999999864

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.36  E-value=1.1e-12  Score=86.47  Aligned_cols=54  Identities=22%  Similarity=0.234  Sum_probs=47.8

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCcEEE
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEF  261 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~  261 (288)
                      .++|+|+|. .+..++||+|.+||+|.|+++.++|||.|+..  |+.||||++||++
T Consensus         2 ~~~al~d~~-~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFP-GSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBC-CCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccC-CCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            588999992 24566799999999999999999999999987  9999999999975

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.36  E-value=1.5e-12  Score=85.85  Aligned_cols=55  Identities=29%  Similarity=0.602  Sum_probs=50.5

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEec
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY  166 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~  166 (288)
                      .++|+++|.++..++|+|++||+|.|+++.+++||.++.. +|+.|+||++||+.+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            4789999999999999999999999999988999999964 499999999999875

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.36  E-value=2.7e-12  Score=88.72  Aligned_cols=59  Identities=31%  Similarity=0.500  Sum_probs=53.6

Q ss_pred             eeEEeeeccCCCC--CCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~--~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.+.  ..++|+|++||+|.|+.+.+++||.|+ .+++.|+||++||+.+...
T Consensus         9 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~~   69 (73)
T 2ebp_A            9 CGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGL-LNNKVGTFKFIYVDVLSSG   69 (73)
T ss_dssp             SEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEE-CSSCEEEECSTTEEECCCC
T ss_pred             ceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEE-ECCCEEEEeHHHEEECCCC
Confidence            3568999999976  999999999999999999889999998 7899999999999988654

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.35  E-value=1.8e-12  Score=93.80  Aligned_cols=61  Identities=21%  Similarity=0.361  Sum_probs=53.0

Q ss_pred             CeEEEEEEcccCCCCCCC-eeeecCCCEEEEEEeCCC-----CeeEEEe-CCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKT-ALKLEIGDIIKVTKTNIN-----GQWEGEL-NGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~-eLs~~~g~~v~v~~~~~~-----~w~~~~~-~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|+|+|  .+...+ ||+|.+||+|.|+++.+.     |||.|++ +|+.||||++||+.+....+
T Consensus        14 ~~~~~alydy--~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~~~   81 (92)
T 1jqq_A           14 LEFARALYDF--VPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRRKK   81 (92)
T ss_dssp             CEEEEESSBB--CCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC--
T ss_pred             CEEEEECccC--CCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCCCC
Confidence            3479999999  667888 999999999999999876     9999998 79999999999999976543

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=3.8e-12  Score=89.63  Aligned_cols=59  Identities=15%  Similarity=0.304  Sum_probs=54.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+++.+++||.++ .+++.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   66 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVR-FGELEGWAPSHYLVLDENE   66 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEE-ETTEEEEEETTTEECCCCC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEE-ECCCEEEEEhHHeEECCCC
Confidence            4568999999999999999999999999999989999999 6799999999999987654

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.6e-12  Score=89.23  Aligned_cols=57  Identities=9%  Similarity=0.104  Sum_probs=50.5

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEEeC-CeeeEecCCcEEEcCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELN-GKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~~~-~~~G~~P~~~v~~~~~~  265 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++.+ +|||.++.. |+.||||++||+.+...
T Consensus         9 ~~~alydy--~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct4_A            9 HCVAIYHF--EGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSGP   67 (70)
T ss_dssp             EEEESSCB--CCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCCC
T ss_pred             EEEEcccC--CCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCCC
Confidence            69999999  56777899999999999999874 679999987 99999999999988653

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.35  E-value=4.6e-13  Score=91.92  Aligned_cols=60  Identities=22%  Similarity=0.288  Sum_probs=49.6

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~~  265 (288)
                      +..++|+|+|.+...+++||+|.+||+|.|+++ +++||.++ .+|+.||||++||+.+...
T Consensus         5 ~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   65 (70)
T 2vkn_A            5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDGP   65 (70)
T ss_dssp             EEEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEEE
T ss_pred             CEEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCCC
Confidence            457999999954322345999999999999987 78999996 5899999999999988643

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.35  E-value=1.7e-12  Score=86.77  Aligned_cols=56  Identities=29%  Similarity=0.611  Sum_probs=51.5

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEe-cCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~-~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      .++|+++|.++..++|+|++||+|.|+.+ .+++||.|+ .+|+.|+||++||+.+..
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~   59 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGE-LNGRRGMFPDNFVKEIKR   59 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEE-ETTEEEEEEGGGEEECC-
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEE-ECCcEEEechHHEEECCC
Confidence            47899999999999999999999999998 788999999 689999999999998764

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.35  E-value=1.8e-12  Score=88.03  Aligned_cols=59  Identities=31%  Similarity=0.622  Sum_probs=51.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|++++ ++||.+++.+|+.|+||++||+.+...
T Consensus         4 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~-~~Ww~~~~~~g~~G~~Psnyv~~~~~~   62 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYVERKLEH   62 (67)
T ss_dssp             CEEEEESSCBCCSSTTSCCBCTTCEEEEEECS-SSSCEEECTTSCEEECCCCSEEEC---
T ss_pred             CeEEEEeeeECCCCCCccccCCCCEEEEEecC-CCeEEEEeCCCCEEEeChHHEeEcCCC
Confidence            35689999999999999999999999999985 799999977899999999999876653

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=4e-12  Score=89.75  Aligned_cols=57  Identities=12%  Similarity=0.123  Sum_probs=50.1

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCC-CeeEEEe--CCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNIN-GQWEGEL--NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~-~w~~~~~--~~~~G~~P~~~v~~~~~  264 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.++ +||.++.  +++.||||++||+....
T Consensus        18 ~~~~Alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   77 (81)
T 1x6g_A           18 TQCITKCEH--TRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSG   77 (81)
T ss_dssp             CEEEESSCB--SSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECCC
T ss_pred             CEEEECCCC--CcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEccc
Confidence            369999999  567788999999999999998776 9999986  68999999999998654

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.35  E-value=6.1e-13  Score=91.79  Aligned_cols=55  Identities=16%  Similarity=0.149  Sum_probs=49.8

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe---CCee---eEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL---NGKT---GHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~---~~~~---G~~P~~~v~~~~  263 (288)
                      .+++|+|+|  .+..++||+|.+||+|.| ++.++|||.++.   +|+.   ||||++||++++
T Consensus        11 ~~~~alydy--~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           11 PKYVGLWDF--KSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CEEECCTTC--BCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             cEEEEcccC--CCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            379999999  567778999999999999 988999999988   7999   999999999875

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.35  E-value=2.2e-12  Score=85.02  Aligned_cols=55  Identities=29%  Similarity=0.681  Sum_probs=51.2

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.++..++|+|++||+|.|+++.+++||.+++ +++.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-HGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEE-CCcEEEEchHHeEEC
Confidence            4688999999999999999999999999988899999995 899999999999875

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.35  E-value=2.6e-12  Score=88.35  Aligned_cols=60  Identities=32%  Similarity=0.712  Sum_probs=54.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEe--cCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~--~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.+...++|+|++||+|.|+.+  .+++||.|++.+|+.|+||++||+.+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCS
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCC
Confidence            3468999999999999999999999999998  57899999878899999999999988764

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.35  E-value=1.3e-12  Score=88.75  Aligned_cols=57  Identities=16%  Similarity=0.228  Sum_probs=52.2

Q ss_pred             eEEeeeccCCCC--CCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~--~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ..++|+++|.+.  +.++|+|++||+|.|+.+.+++||.|. .+|+.|+||++||+.+..
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~   65 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGE-CNGKRGHFPFTHVRLLDQ   65 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEE-ETTEEEEEEGGGBCCBCS
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEE-ECCCEEEEehHhEEEcCC
Confidence            468999999999  889999999999999999999999998 789999999999987653

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.35  E-value=2.1e-12  Score=85.18  Aligned_cols=55  Identities=31%  Similarity=0.536  Sum_probs=51.1

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.++..++|+|++||+|.|+++.+++||.++ .+++.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGS-CNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEE-ECCcEEEeeHHHEEEc
Confidence            468899999999999999999999999999889999999 5899999999999864

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.35  E-value=2e-12  Score=85.27  Aligned_cols=55  Identities=33%  Similarity=0.752  Sum_probs=51.2

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.++..++|+|++||+|.|+...+++||.|+. +|+.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL-NNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEE-CCcEEEechHHeEEC
Confidence            4689999999999999999999999999998899999994 899999999999875

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.35  E-value=2.1e-12  Score=85.44  Aligned_cols=55  Identities=33%  Similarity=0.701  Sum_probs=51.2

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.++..++|+|++||+|.|+++.+++||.++ .+++.|+||++||+++
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             cEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEE-ECCcEEEEeHHHEEEC
Confidence            468999999999999999999999999999889999999 5899999999999864

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.35  E-value=2.4e-12  Score=87.98  Aligned_cols=58  Identities=22%  Similarity=0.602  Sum_probs=52.9

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEec--CCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~--~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+++|.++..+||+|++||+|.|+.+.  +++||.|+ .+|+.|+||++||+.+...
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~-~~g~~G~~P~~yV~~~~~~   62 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVKLLPPL   62 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEE-ETTEEEEEEGGGEEECCSC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEE-ECCcEEEecHHHEEECCCC
Confidence            4689999999999999999999999999985  78999999 6899999999999987654

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.35  E-value=3.7e-12  Score=88.06  Aligned_cols=59  Identities=24%  Similarity=0.539  Sum_probs=53.9

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+++|.++..++|+|++||+|.|+++.+++||.|++. +|+.||||++||+.+...
T Consensus         6 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~   65 (73)
T 2lcs_A            6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPE   65 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSS
T ss_pred             CEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCC
Confidence            46899999999999999999999999999998999999964 489999999999988654

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.34  E-value=2.3e-12  Score=86.75  Aligned_cols=56  Identities=25%  Similarity=0.681  Sum_probs=51.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec--CCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~--~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.  +++||.|+ .+|+.|+||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGE-LNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             CEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEE-ECCeEEEEeHHHEEEC
Confidence            46789999999999999999999999999975  67999999 6899999999999876

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.34  E-value=2.1e-12  Score=87.73  Aligned_cols=56  Identities=36%  Similarity=0.739  Sum_probs=52.4

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.+...++|+|++||+|.|+.+.+++||.|++.+|+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            35889999999999999999999999999988999999977899999999999987

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=2.8e-12  Score=90.06  Aligned_cols=56  Identities=18%  Similarity=0.234  Sum_probs=49.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  264 (288)
                      .+++|+|+|  .+...+||+|.+||+|.|++. +++||.++.  +++.||||++||+.+..
T Consensus        18 ~~~~Alydy--~a~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           18 DFLAVLSDY--PSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             CEEEESSCS--SCTTTSCCSSCTTCEEEEEEE-ETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             eEEEEccCC--CCCCCCcCCCCCCCEEEEEec-CCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            479999999  567788999999999999994 789999986  48999999999998754

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.34  E-value=3.1e-12  Score=86.41  Aligned_cols=57  Identities=28%  Similarity=0.427  Sum_probs=52.3

Q ss_pred             eEEeeeccCCC-CCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecc
Q psy5076         111 EKVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       111 ~~~~a~~~~~~-~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~  167 (288)
                      ..++|+++|.+ +..++|+|++||+|.|+...+++||.+++ .+|+.|+||++||+.+.
T Consensus         6 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             CEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             cEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            45899999999 99999999999999999998899999985 67999999999998764

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=4.4e-12  Score=86.43  Aligned_cols=59  Identities=31%  Similarity=0.628  Sum_probs=54.0

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.++ .+++.||||++||+.+..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAEQSGP   65 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEE-SSSCEEEEETTTEEECCCC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEE-ECCcEEEEehHHeEEcCCC
Confidence            4578999999999999999999999999999889999999 5899999999999988543

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.34  E-value=2.9e-12  Score=88.10  Aligned_cols=58  Identities=43%  Similarity=0.787  Sum_probs=51.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEE-ecCCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~-~~~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      ...++|+|+|.+...++|+|++||+|.|+. ..+++||.|++.+|+.|+||++||++..
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   69 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE   69 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC--
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEcc
Confidence            457999999999999999999999999999 6788999999778999999999998754

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.34  E-value=1.9e-12  Score=87.42  Aligned_cols=58  Identities=21%  Similarity=0.538  Sum_probs=52.7

Q ss_pred             eeeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       109 ~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      ....++|+++|.++..++|+|++||+|.|+++.+++||.|+ .+|+.|+||++||+.+.
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            6 KKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             --CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEE-ETTEEEEEEGGGEEECC
T ss_pred             CCeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEE-ECCCEEEeehHHEEECc
Confidence            35679999999999999999999999999999889999999 78999999999999875

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.34  E-value=3.2e-13  Score=102.66  Aligned_cols=61  Identities=18%  Similarity=0.181  Sum_probs=53.5

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~---~~~~G~~P~~~v~~~~~~~~  267 (288)
                      +.+++|+|+|  .+..++||+|.+||+|.|+++.++|||.|+.   .|+.||||++||+.+....+
T Consensus         3 ~~~~~Alydy--~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~~~   66 (120)
T 2kym_A            3 PLFAVTLYEF--KAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMDP   66 (120)
T ss_dssp             CCEEEECSCB--CCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSSCT
T ss_pred             CEEEEEcccC--CCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCCCC
Confidence            4589999999  6677889999999999999999999999985   57889999999999965544

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.34  E-value=1.8e-12  Score=88.40  Aligned_cols=57  Identities=16%  Similarity=0.294  Sum_probs=50.0

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~  264 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++. ++||.++. +|+.||||++||+.+..
T Consensus         8 ~~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            8 LKWVLCNYDF--QARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCEEEESSCB--CCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CEEEEECccC--CCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            3479999999  5677889999999999999985 89999965 68999999999998854

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.34  E-value=2.8e-12  Score=84.78  Aligned_cols=57  Identities=26%  Similarity=0.575  Sum_probs=51.7

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC-CcEEEEeCCCeEecc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYS  167 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~-g~~G~vP~~~v~~~~  167 (288)
                      ..++|+++|.++..++|+|++||+|.|+.+.+++||.+++.. ++.|+||++||+.+.
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   59 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ   59 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEECC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            468999999999999999999999999999889999999654 899999999998763

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.34  E-value=3.3e-12  Score=86.79  Aligned_cols=59  Identities=22%  Similarity=0.589  Sum_probs=53.2

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC-CcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~-g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.|++.+ ++.|+||++||+.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECCC
Confidence            4579999999999999999999999999999889999999643 6999999999998764

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.34  E-value=2.9e-12  Score=85.68  Aligned_cols=56  Identities=32%  Similarity=0.605  Sum_probs=50.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~  166 (288)
                      ...++|+++|.+...++|+|++||+|.|++++ ++||.+++ .+|+.|+||++||+++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            45789999999999999999999999999986 59999997 6899999999999864

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=9.2e-13  Score=89.84  Aligned_cols=56  Identities=13%  Similarity=0.207  Sum_probs=49.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~  264 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++ +++||.++. +++.||||++||+.+..
T Consensus         8 ~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            8 KYVKILYDF--TARNANELSVLKDEVLEVLED-GRQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCEECSSCB--CCSSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             EEEEECccC--CCCCCCccCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEHHHeEECCC
Confidence            379999999  567788999999999999998 489999984 89999999999998753

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.34  E-value=3.2e-12  Score=84.22  Aligned_cols=55  Identities=18%  Similarity=0.480  Sum_probs=51.3

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      .++|+++|.++..++|+|++||+|.|+++.+++||.+. .+|+.|+||++||++..
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGS-YNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEE-ETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEE-ECCcEEEEehHHEEECC
Confidence            58899999999999999999999999999989999996 88999999999998754

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.34  E-value=1.7e-12  Score=86.23  Aligned_cols=57  Identities=26%  Similarity=0.612  Sum_probs=52.4

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ..++|+++|.+...++|+|++||+|.|+.. +++||.+++.+|+.||||++||+.+..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            358899999999999999999999999998 789999997789999999999998764

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.34  E-value=3.6e-12  Score=86.84  Aligned_cols=59  Identities=27%  Similarity=0.571  Sum_probs=54.0

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.+...++|+|++||+|.|+++.+++||.++ .+++.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGE-INGVSGIFPASSVEVISGP   65 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEE-ETTEEEEEESSSEETTCSC
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEE-ECCcEEEeehHHEEEcCCC
Confidence            4568999999999999999999999999999889999999 7899999999999987653

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.33  E-value=3e-12  Score=86.18  Aligned_cols=58  Identities=31%  Similarity=0.635  Sum_probs=53.2

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+++|.+...++|+|++||+|.|+...+++||.++ .+++.|+||++||+.+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEE-ETTEEEEEEGGGEEECCC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEE-ECCCEEEEehHHeEEcCC
Confidence            3468999999999999999999999999998889999999 589999999999998764

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.33  E-value=3e-12  Score=87.03  Aligned_cols=58  Identities=19%  Similarity=0.246  Sum_probs=53.2

Q ss_pred             eEEeeeccCCCC--CCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~--~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+++|.++  ..++|+|++||+|.|+.+.+++||.|. .+|+.|+||++||+.+...
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~fP~~yv~~~~~~   61 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVKIFDPQ   61 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEE-ETTEEEEEEGGGEEECCSC
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEE-eCCcEEEEehHHeEECCCc
Confidence            358899999998  999999999999999999889999998 7899999999999988654

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.33  E-value=1.7e-13  Score=93.32  Aligned_cols=57  Identities=18%  Similarity=0.141  Sum_probs=50.8

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~  264 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++ .+|+.||||++||+.+++
T Consensus         9 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   66 (67)
T 1aww_A            9 KKVVALYDY--MPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CEEEBSSCC--CCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             eEEEECccC--CCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcCC
Confidence            379999999  567778999999999999999999999997 789999999999987654

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.33  E-value=3e-12  Score=87.23  Aligned_cols=58  Identities=40%  Similarity=0.759  Sum_probs=53.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      ...++|+++|.+...++|+|++||+|.|+.+.+++||.+++.+|+.|+||++||+.+.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            4568999999999999999999999999999888999999778999999999998764

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=3.9e-12  Score=86.68  Aligned_cols=59  Identities=25%  Similarity=0.499  Sum_probs=53.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGE-RAGCCGYIPANHVGKHSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEE-CTTCCEEEESSSEECCCCS
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEE-ECCeEEEEehHHeEECCCC
Confidence            4568999999999999999999999999999889999999 7899999999999987643

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=6.4e-12  Score=88.24  Aligned_cols=60  Identities=32%  Similarity=0.658  Sum_probs=55.0

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM  170 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~  170 (288)
                      ...++|+++|.+...++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+....
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~~   66 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS-LNGKKGHFPAAYVEELPSNA   66 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEE-SSSCEEEECSTTEEEESSCS
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEE-ECCCEEEEEhHHeEECCCCC
Confidence            3578999999999999999999999999998888999999 78999999999999887653

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.33  E-value=9.6e-13  Score=95.51  Aligned_cols=61  Identities=20%  Similarity=0.302  Sum_probs=53.3

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC----CCeeEEEeCCe-eeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI----NGQWEGELNGK-TGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~----~~w~~~~~~~~-~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|||+|  .+..++||+|.+||+|.|+++.+    ++||.+++.++ .||||++||+.+.....
T Consensus        17 ~~~~~alydy--~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~~~   82 (93)
T 1wxu_A           17 HVVARAEYDF--VAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRG   82 (93)
T ss_dssp             BBCEEESSCB--CCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCBCC
T ss_pred             CEEEEECccC--CCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCccc
Confidence            4479999999  56778899999999999999887    69999999887 99999999999976544

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.33  E-value=5.8e-12  Score=85.82  Aligned_cols=59  Identities=27%  Similarity=0.577  Sum_probs=54.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGE-HHGRVGIFPRTYIELLSGP   65 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEE-CSSCEEEEETTTEEECCSC
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEE-ECCCEEEEchHHEEECCCC
Confidence            4578999999999999999999999999998889999999 7899999999999988654

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.33  E-value=3.5e-12  Score=84.07  Aligned_cols=55  Identities=31%  Similarity=0.730  Sum_probs=50.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      ...++|+++|.+...++|+|++||+|.|+...+++||.++ .+++.|+||++||++
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAE   57 (58)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEE
T ss_pred             cEEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEE-ECCCEEEEehHHEEe
Confidence            3568999999999999999999999999999888999999 589999999999975

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.33  E-value=3.3e-12  Score=91.25  Aligned_cols=53  Identities=17%  Similarity=0.172  Sum_probs=47.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEE
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEF  261 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~  261 (288)
                      .+++|+|+|  .+...+||+|.+||+|.|+++ ++|||.|+ .+|+.||||++||+.
T Consensus        32 ~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           32 VIVIAKWDY--TAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEEESSCC--CCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             eEEEECccC--CCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            479999999  567788999999999999998 78999998 589999999999963

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.32  E-value=3.5e-12  Score=86.92  Aligned_cols=59  Identities=25%  Similarity=0.684  Sum_probs=53.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|++++ ++||.+++.+|+.||||++||+++...
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~~   66 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPAA   66 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCSC
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCCC
Confidence            45689999999999999999999999999986 899999877899999999999987653

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.32  E-value=5.1e-12  Score=86.34  Aligned_cols=59  Identities=29%  Similarity=0.606  Sum_probs=53.1

Q ss_pred             eEEeeeccCC-CCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC-CcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~-~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~-g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+++|. +...++|+|++||+|.|++..+++||.|++.. |+.||||++||+.+...
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~   63 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDT   63 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCSC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCCc
Confidence            4689999995 99999999999999999999889999999653 99999999999987654

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.32  E-value=3.5e-12  Score=84.67  Aligned_cols=55  Identities=36%  Similarity=0.861  Sum_probs=50.4

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEec--CCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~--~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.++..++|+|++||+|.|+++.  +++||.++. +++.|+||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV-NGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEE-CCEEEEEeHHHEEEC
Confidence            5689999999999999999999999999986  689999995 899999999999864

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.32  E-value=3.6e-12  Score=87.63  Aligned_cols=60  Identities=25%  Similarity=0.425  Sum_probs=53.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+...+++||.|++ .+|+.|+||++||+++...
T Consensus         6 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   66 (71)
T 2fpf_A            6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKE   66 (71)
T ss_dssp             CCCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC--
T ss_pred             CeEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCCC
Confidence            34689999999999999999999999999998999999997 7899999999999987653

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.32  E-value=4.1e-12  Score=89.47  Aligned_cols=59  Identities=36%  Similarity=0.611  Sum_probs=54.2

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCC-eEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~-ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+++.+++ ||.|+ .+|+.|+||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~~   69 (80)
T 2i0n_A           10 AKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQ-LNGKEGSFPVDHVEILLSD   69 (80)
T ss_dssp             CCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEE-ETTEEEEEEGGGEEEESSC
T ss_pred             CeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEE-ECCcEEEechHHEEECCCC
Confidence            56799999999999999999999999999998777 99999 7899999999999988754

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.32  E-value=5.5e-12  Score=85.96  Aligned_cols=59  Identities=25%  Similarity=0.537  Sum_probs=53.8

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.++ ++||.+++.+++.||||++||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKNEAGRSGYIPSNILEPLSGP   65 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEEGGGEECCCCS
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEhHHcEECCCC
Confidence            45689999999999999999999999999985 899999988899999999999987654

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.32  E-value=1.3e-11  Score=92.26  Aligned_cols=59  Identities=17%  Similarity=0.214  Sum_probs=52.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.  +++.||||++||+++....
T Consensus        28 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   88 (109)
T 2yt6_A           28 TIFVALYDY--EARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSIQ   88 (109)
T ss_dssp             CEEEESSCC--CCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSSCT
T ss_pred             EEEEECccC--CCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCccc
Confidence            479999999  5677789999999999999999999999985  7999999999999986543

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.32  E-value=2.7e-12  Score=87.52  Aligned_cols=55  Identities=31%  Similarity=0.754  Sum_probs=49.8

Q ss_pred             EEeeeccCCCCCCC-CCCCCCCCEEEEEEecC-----CCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         112 KVIAKYDFDGNDPD-DLPFKKNDILIVVSKDE-----EHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       112 ~~~a~~~~~~~~~~-eLs~~~g~~i~vl~~~~-----~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      .++|+|+|.++..+ ||+|++||+|.|+++.+     ++||.+++.+|+.|+||++||+.+
T Consensus         9 ~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            9 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             EEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            47899999999999 99999999999999875     499999976899999999999864

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=5.9e-12  Score=88.20  Aligned_cols=59  Identities=32%  Similarity=0.707  Sum_probs=54.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.++ .+++.|+||++||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   75 (78)
T 2ed0_A           17 LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV-MNGVTGLFPGNYVESISGP   75 (78)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEE-ETTEEEEEETTSEEECSSS
T ss_pred             CEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEE-ECCcEEEeChHHEEEcCCC
Confidence            4579999999999999999999999999999889999999 7999999999999988653

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.32  E-value=3.1e-12  Score=87.44  Aligned_cols=59  Identities=32%  Similarity=0.579  Sum_probs=53.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+++|.+...++|+|++||+|.|+.+.+++||.|+..+|+.|+||++||++...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETL   64 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECcc
Confidence            45689999999999999999999999999998899999996689999999999987653

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.31  E-value=4.2e-12  Score=99.26  Aligned_cols=59  Identities=34%  Similarity=0.499  Sum_probs=53.0

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .+...+||+|.+||+|.|+++. ++|||.|+++|+.||||++||+.+..+.
T Consensus         6 ~~~~Alydy--~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~   65 (142)
T 2kbt_A            6 GTAKARYDF--CARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEY   65 (142)
T ss_dssp             CEEEESSCC--CCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSCCC
T ss_pred             eEEEECCcc--CCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccccc
Confidence            379999999  5677889999999999999984 8999999999999999999999996653

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.31  E-value=3.9e-12  Score=86.68  Aligned_cols=57  Identities=28%  Similarity=0.511  Sum_probs=51.1

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CC---cEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SG---EVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g---~~G~vP~~~v~~~  166 (288)
                      ...++|+|+|.++..++|+|++||+|.|+++.+++||.|+.. ++   +.|+||++||+.+
T Consensus         7 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            7 PFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            457999999999999999999999999999988999999853 34   8999999999865

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.31  E-value=6.1e-12  Score=86.71  Aligned_cols=59  Identities=27%  Similarity=0.597  Sum_probs=53.1

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+ +++||.+++.+++.|+||++||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   65 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNSA   65 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCCC
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCCC
Confidence            4578999999999999999999999999997 5699999966899999999999987643

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=5.5e-12  Score=86.95  Aligned_cols=59  Identities=29%  Similarity=0.626  Sum_probs=53.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++. +++.|+||++||+.+...
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~~~~   67 (72)
T 2dl8_A            9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRH-NGIDGLIPHQYIVVQDTS   67 (72)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEE-TTEEEEECSSSEEECCSS
T ss_pred             CEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEE-CCEEEEEchHHeEEcCCC
Confidence            35789999999999999999999999999988889999994 899999999999987654

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.31  E-value=5.6e-12  Score=83.06  Aligned_cols=54  Identities=26%  Similarity=0.625  Sum_probs=49.6

Q ss_pred             EEeeeccC-CCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEe
Q psy5076         112 KVIAKYDF-DGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK  165 (288)
Q Consensus       112 ~~~a~~~~-~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~  165 (288)
                      .++|+++| .+...++|+|++||+|.|+.+.+++||.|++. +|+.|+||++||++
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            57899999 89999999999999999999988999999965 39999999999975

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=7.5e-12  Score=85.75  Aligned_cols=60  Identities=20%  Similarity=0.392  Sum_probs=54.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.+++. +++.||||++||+++...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCCC
Confidence            457899999999999999999999999999988999999964 689999999999987654

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.31  E-value=4.9e-12  Score=87.42  Aligned_cols=57  Identities=33%  Similarity=0.751  Sum_probs=52.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~  166 (288)
                      ...++|+|+|.++..++|+|++||+|.|+++.+++||.++.. +|+.|+||++||+++
T Consensus        15 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           15 VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            457899999999999999999999999999988999999963 899999999999875

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.31  E-value=3e-12  Score=87.55  Aligned_cols=57  Identities=30%  Similarity=0.592  Sum_probs=52.6

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEec---CCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD---EEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~---~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ..++|+++|.++..++|+|++||+|.|+.+.   +++||.|+ .+|+.|+||++||+.+..
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~   63 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCS-LHGRQGIVPGNRLKILVG   63 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEE-ETTEEEEEEGGGEEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEE-ECCcEEEechhhEEECCC
Confidence            4689999999999999999999999999987   78999999 789999999999998764

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.31  E-value=8.1e-12  Score=87.27  Aligned_cols=59  Identities=25%  Similarity=0.531  Sum_probs=54.2

Q ss_pred             eEEeeeccCCCC-CCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGN-DPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~-~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+++|.+. ..++|+|++||+|.|+.+. +++||.+++.+|+.||||++||+.+...
T Consensus        10 ~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~   70 (77)
T 2enm_A           10 TKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPND   70 (77)
T ss_dssp             EEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCC
T ss_pred             cEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCC
Confidence            568999999999 9999999999999999985 7899999988899999999999988654

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.31  E-value=3.9e-12  Score=84.47  Aligned_cols=54  Identities=33%  Similarity=0.691  Sum_probs=50.2

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeE
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ  164 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~  164 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.++ .+|+.|+||++||+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGR-HNGIDGLVPHQYIV   59 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEE-ETTEEEEEEGGGEE
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEE-ECCeEEEEeHhhEE
Confidence            4578999999999999999999999999999888999999 48999999999986

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.31  E-value=5.1e-12  Score=84.40  Aligned_cols=56  Identities=32%  Similarity=0.779  Sum_probs=51.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ...++|+++|.++..++|+|++|++|.|+++.+++||.++ .+|+.|+||++||+++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~-~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIE-VNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEE-ECCEEEEEEHHHEEEC
Confidence            3568999999999999999999999999999889999999 6899999999999875

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.30  E-value=1.8e-12  Score=97.54  Aligned_cols=57  Identities=23%  Similarity=0.249  Sum_probs=49.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEE-----eCCCCeeEEEeC----------CeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTK-----TNINGQWEGELN----------GKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~-----~~~~~w~~~~~~----------~~~G~~P~~~v~~~~  263 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|++     ..++|||.|+..          |+.||||++||+.++
T Consensus        44 ~~~~~Alydy--~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l~  115 (115)
T 1bb9_A           44 MFKVQAQHDY--TATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ  115 (115)
T ss_dssp             CEEEEESSCB--CCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             ceEEEECCcc--CCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEECc
Confidence            3479999999  56777899999999999999     788999999763          789999999999873

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.30  E-value=5.5e-12  Score=84.79  Aligned_cols=57  Identities=23%  Similarity=0.554  Sum_probs=51.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~  166 (288)
                      ...++|+++|.++..++|+|++||+|.++.+.+++||.++.. +++.|+||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            6 LRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             --CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CEEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            346899999999999999999999999999988999999965 899999999999875

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=7.3e-12  Score=86.56  Aligned_cols=59  Identities=31%  Similarity=0.709  Sum_probs=53.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEe---cCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~---~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+   .+++||.++ .+++.|+||++||+.+...
T Consensus         8 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   69 (73)
T 2dl7_A            8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGE-FNGRIGVFPSVLVEELSSG   69 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEE-ETTEEEEECSSSEEECCSS
T ss_pred             CEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEE-ECCCEEEEChHHEEECCCC
Confidence            4568999999999999999999999999998   478999999 8899999999999988654

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.30  E-value=4.7e-12  Score=85.45  Aligned_cols=56  Identities=27%  Similarity=0.592  Sum_probs=51.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.++ .+|+.|+||++||+.+
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B            9 GITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVELR   64 (65)
T ss_dssp             CSCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             ceEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEE-ECCcEEEEehHHeEEC
Confidence            3468999999999999999999999999999889999999 7899999999999875

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.30  E-value=3.5e-12  Score=91.97  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~  267 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++ +++||.|+.  +|+.||||++||+.+.....
T Consensus         4 ~~~~Alydy--~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   64 (90)
T 3reb_B            4 IIVVALYDY--VSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSGGG   64 (90)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC---
T ss_pred             EEEEECCcc--CcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCCCC
Confidence            479999999  567778999999999999998 678999997  79999999999999876544

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=8.6e-12  Score=89.46  Aligned_cols=59  Identities=19%  Similarity=0.227  Sum_probs=53.8

Q ss_pred             eeEEeeeccCCCC--CCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~--~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.+.  ..++|+|++||+|.|+.+.+++||.|. .+|+.||||++||+.+...
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~fP~~yv~~~~~~   76 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVKIFDPQ   76 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEE-CSSCEEEECTTTEEECCSS
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEE-eCCCEEEEehHHeEECCCC
Confidence            5678999999955  999999999999999999999999998 7899999999999998754

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.30  E-value=2.2e-12  Score=89.46  Aligned_cols=56  Identities=23%  Similarity=0.388  Sum_probs=49.8

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~---~~~~G~~P~~~v~~~~~  264 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++. +|||.|+.   +|+.|+||++||+.+..
T Consensus        12 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A           12 KYGVAFYNY--DARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             SCEEECSEE--CCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCC
T ss_pred             eEEEEceee--CCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEecc
Confidence            379999999  5677889999999999999985 88999988   78999999999998754

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.30  E-value=7e-12  Score=83.15  Aligned_cols=56  Identities=29%  Similarity=0.663  Sum_probs=50.7

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEe-cCCCeEEEEe-CCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQN-ISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~-~~~~ww~~~~-~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.++..++|+|++||+|.|++. .+++||.++. .+++.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            468999999999999999999999999998 4889999996 4899999999999864

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.30  E-value=5.8e-12  Score=87.10  Aligned_cols=59  Identities=27%  Similarity=0.540  Sum_probs=54.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.+...++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM-LHGHSGFFPINYVEILVAL   65 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEE-ETTEEEEEESSSEEESSCC
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEE-ECCCEEEechHHEEEccCC
Confidence            4579999999999999999999999999998889999999 5899999999999988654

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.30  E-value=7.9e-12  Score=85.67  Aligned_cols=59  Identities=24%  Similarity=0.591  Sum_probs=53.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec--CCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~--~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.  +++||.++ .+++.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~   67 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVKLLSGP   67 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEE-CSSCEEEEEGGGEEECCCC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEE-ECCcEEEechHHeEECCCC
Confidence            45789999999999999999999999999985  78999999 6899999999999987653

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.30  E-value=4.6e-12  Score=82.21  Aligned_cols=52  Identities=23%  Similarity=0.536  Sum_probs=48.1

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecC-CCeEEEEeCCCcEEEEeCCCeE
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQ  164 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-~~ww~~~~~~g~~G~vP~~~v~  164 (288)
                      .++|+++|.++..++|+|++||+|.|+.+.+ ++||.++. +++.|+||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~-~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGEC-DGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEE-TTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEE-CCeEEEeeHHHcC
Confidence            5789999999999999999999999999885 79999995 8999999999984

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.30  E-value=6.2e-12  Score=89.05  Aligned_cols=59  Identities=31%  Similarity=0.735  Sum_probs=54.0

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+...+++||.|. .+|+.|+||++||+.+...
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   75 (83)
T 1neg_A           17 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLAAA   75 (83)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEECCTT
T ss_pred             ceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEE-ECCeEEEEEHHHEEECCCC
Confidence            3468999999999999999999999999999888999996 8899999999999988654

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.30  E-value=5.4e-12  Score=85.71  Aligned_cols=57  Identities=19%  Similarity=0.398  Sum_probs=50.2

Q ss_pred             eeEEeeeccCCCCCCCC-CCCCCCCEEEEEEe-cCCCeEEEEeC-CCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDD-LPFKKNDILIVVSK-DEEHWWTAQNI-SGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~e-Ls~~~g~~i~vl~~-~~~~ww~~~~~-~g~~G~vP~~~v~~~  166 (288)
                      ...++|+++|.+...++ |+|++||+|.|+.. .+++||.|++. +|+.|+||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            45799999999988777 99999999999964 56799999974 899999999999875

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.30  E-value=8.3e-12  Score=86.28  Aligned_cols=59  Identities=22%  Similarity=0.606  Sum_probs=54.0

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec--CCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~--~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.+...++|+|++||+|.|+...  +++||.|+ .+|+.|+||++||+.+...
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~   69 (73)
T 2k9g_A            9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVKLLPPD   69 (73)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEE-ETTEEEEEEGGGEEECCSS
T ss_pred             ccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEE-ECCeEEEEchHHEEECCcc
Confidence            56799999999999999999999999999985  78999999 6899999999999988654

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.30  E-value=5e-12  Score=87.02  Aligned_cols=55  Identities=29%  Similarity=0.710  Sum_probs=50.8

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      ...++|+++|.++..++|+|++||+|.|+...+++||.|+ ..++.|+||++||++
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~-~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           17 ARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE-THQGIGLFPSNFVTA   71 (72)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEE-CSSCEEECTTCCEEE
T ss_pred             CeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEE-ECCCEEEechhhCcc
Confidence            4578999999999999999999999999998889999999 678899999999975

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.30  E-value=5.6e-12  Score=84.25  Aligned_cols=55  Identities=25%  Similarity=0.668  Sum_probs=50.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      ...++|+++|.++..++|+|++||+|.|+...+++||.|+ ..++.|+||++||+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGE-NHRGTGLFPSNFVTT   59 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEES
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEE-ECCCEEEechhHEEE
Confidence            4578999999999999999999999999998889999999 568899999999975

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.30  E-value=9.5e-12  Score=89.84  Aligned_cols=62  Identities=31%  Similarity=0.682  Sum_probs=55.8

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEe--cCCCeEEEEeCCCcEEEEeCCCeEecccCCc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYVQKYSEGMS  171 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~--~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~  171 (288)
                      ...++|+|+|.++..++|+|++||+|.|+++  .+++||.+++.+++.||||.+||+.+.....
T Consensus        17 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   80 (91)
T 1wx6_A           17 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   80 (91)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEESSS
T ss_pred             cEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCcCC
Confidence            4579999999999999999999999999998  5789999997789999999999999876533

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=8.7e-12  Score=86.66  Aligned_cols=58  Identities=19%  Similarity=0.469  Sum_probs=52.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC---CCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI---SGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~---~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.++ .++|+|++||+|.|+++.+++||.++..   +++.||||++||+++..
T Consensus        10 ~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~   70 (75)
T 2egc_A           10 KDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS   70 (75)
T ss_dssp             CEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCS
T ss_pred             CeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCC
Confidence            3568999999999 9999999999999999998999999964   46899999999998865

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.29  E-value=6e-12  Score=86.97  Aligned_cols=59  Identities=31%  Similarity=0.729  Sum_probs=53.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+...
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   63 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDPA   63 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEECCC-
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEE-ECCcEEEEehHHeEECCCC
Confidence            3568999999999999999999999999999889999999 7899999999999988765

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=4.6e-12  Score=86.85  Aligned_cols=59  Identities=22%  Similarity=0.597  Sum_probs=54.0

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   66 (70)
T 2ega_A            8 LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVS-TSEEQGWVPATYLEAQNSG   66 (70)
T ss_dssp             CBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEE-CSSCEEEEEGGGCEESCCC
T ss_pred             CcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEE-ECCCEEEEehHHcEECCCC
Confidence            3468999999999999999999999999999889999999 6789999999999987754

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=7.9e-12  Score=86.87  Aligned_cols=58  Identities=22%  Similarity=0.474  Sum_probs=52.2

Q ss_pred             eeEEeeeccCCCCC-------CCCCCCCCCCEEEEEE-ecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGND-------PDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~-------~~eLs~~~g~~i~vl~-~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.++.       .++|+|++||+|.|+. ..+++||.++ .+|+.|+||++||+.+..
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~   72 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGE-LGGHRGLVPAHLLDHMSL   72 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEE-SSSCEEEEETTTEEECCC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEE-ECCcEEEEChHHeEEccC
Confidence            45799999999999       9999999999999997 4788999999 599999999999998753

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=7.5e-12  Score=86.00  Aligned_cols=59  Identities=29%  Similarity=0.467  Sum_probs=54.1

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec---CCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD---EEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~---~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.+...++|+|++||+|.|+.+.   +++||.++ .+++.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   68 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCL-LHGRQGLAPANRLQILSGP   68 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEE-SSSCCEEEETTTEEECCCS
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEE-ECCCEEEEehHHEEECCCC
Confidence            45789999999999999999999999999986   78999999 8899999999999987654

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.29  E-value=6.9e-12  Score=86.71  Aligned_cols=58  Identities=26%  Similarity=0.609  Sum_probs=53.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.|+ .+|+.|+||++||+.+..
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~   70 (73)
T 3c0c_A           13 QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGM-LHGQSGFFPLSYVQVLVP   70 (73)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEE-ETTEEEEEEGGGEEEEEC
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEE-ECCCEEEeChHHEEECCC
Confidence            4578999999999999999999999999999889999999 589999999999998765

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.29  E-value=7.7e-12  Score=87.61  Aligned_cols=59  Identities=34%  Similarity=0.675  Sum_probs=54.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVEVLDER   65 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEECCC
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEE-ECCCEEEEehHHEEECCCc
Confidence            4578999999999999999999999999998889999998 7899999999999988764

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.29  E-value=6.6e-12  Score=86.49  Aligned_cols=58  Identities=22%  Similarity=0.531  Sum_probs=53.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.++ .+|+.|+||++||+.+..
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           13 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGS-LKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEE-ETTEEEEEEGGGEEEEC-
T ss_pred             CeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEE-ECCcEEEEChHHeEECCC
Confidence            4568999999999999999999999999999889999999 789999999999998764

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=6.5e-12  Score=85.58  Aligned_cols=58  Identities=26%  Similarity=0.553  Sum_probs=52.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.+...++|+|++||+|.|++++ ++||.+++.+++.||||++||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            7 GKYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEHHHeEECCC
Confidence            34689999999999999999999999999975 89999997789999999999988764

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.8e-12  Score=88.24  Aligned_cols=60  Identities=22%  Similarity=0.577  Sum_probs=54.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM  170 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~  170 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+....
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~~   69 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGE-HNGMRGLIPHKYITLPAGTE   69 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEE-ETTEEEEEESSSEECCSSCS
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEE-ECCcEEEEehHHEEEcCCCC
Confidence            3568999999999999999999999999999889999999 48999999999999877653

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.28  E-value=1.8e-11  Score=88.77  Aligned_cols=60  Identities=28%  Similarity=0.522  Sum_probs=53.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec--CCCeEEEEeCCCcEEEEeCCCeEecccCC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEGM  170 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~--~~~ww~~~~~~g~~G~vP~~~v~~~~~~~  170 (288)
                      ...++|+|+|.++..+||+|++||+|.|+.+.  +++||.|+ .+|+.||||.+||+.+....
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~   66 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS-FQGNFGWFPCNYVEKMPSSE   66 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEE-ETTEEEEEETTTEEECCSSS
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEE-ECCCEEEechHHeEEcCCcc
Confidence            34689999999999999999999999999975  68999999 78999999999999987653

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.28  E-value=6.1e-12  Score=87.69  Aligned_cols=60  Identities=25%  Similarity=0.662  Sum_probs=53.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC--CcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--GEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~--g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+++.+++||.++..+  ++.|+||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~   71 (76)
T 2ed1_A           10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDS   71 (76)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCC
T ss_pred             CeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCC
Confidence            4679999999999999999999999999998889999999532  49999999999988754

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.28  E-value=5.5e-12  Score=85.09  Aligned_cols=56  Identities=32%  Similarity=0.728  Sum_probs=50.6

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC---C----CcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI---S----GEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~---~----g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.++..++|+|++||+|.|+.+.+++||.|+..   +    ++.|+||++||+.+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            46899999999999999999999999999988999999853   2    78999999999875

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.1e-11  Score=87.52  Aligned_cols=59  Identities=27%  Similarity=0.526  Sum_probs=54.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   68 (81)
T 2ysq_A           10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQ-IDDEEGWFPASFVRLWVNQ   68 (81)
T ss_dssp             CEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEE-CSSCEEEEEGGGEEESSCC
T ss_pred             ceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEE-ECCCEEEechHHEEEcCCc
Confidence            4679999999999999999999999999999889999999 6799999999999998664

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.28  E-value=7.5e-12  Score=83.33  Aligned_cols=56  Identities=29%  Similarity=0.598  Sum_probs=50.6

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEE-EEeCCCeEecc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVG-SIPVPYVQKYS  167 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G-~vP~~~v~~~~  167 (288)
                      ..++|+++|.++..++|+|++||+|.|+.+.+++||.|+ .+++.| +||++||+.+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGD-YGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEE-ECCeEEEEEChHHcEECC
Confidence            458999999999999999999999999999889999999 467775 99999998864

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.28  E-value=5.9e-12  Score=86.04  Aligned_cols=59  Identities=34%  Similarity=0.702  Sum_probs=53.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   66 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVE-RNGQRGFVPGSYLEKLSGP   66 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGCCBCCCS
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEE-ECCCEEEEehHHeEEcCCC
Confidence            4568999999999999999999999999999889999999 5699999999999887643

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=4e-12  Score=87.43  Aligned_cols=60  Identities=28%  Similarity=0.378  Sum_probs=54.1

Q ss_pred             eeEEeeeccCCC-CCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~-~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.+ +..+||+|++||+|.|+.+.+++||.+++ .+++.|+||++||+.+..+
T Consensus         7 ~~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~   68 (71)
T 2gqi_A            7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSGP   68 (71)
T ss_dssp             CCCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCCS
T ss_pred             CCEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCCC
Confidence            356899999999 99999999999999999998899999985 6799999999999988643

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.28  E-value=2.8e-12  Score=89.87  Aligned_cols=59  Identities=25%  Similarity=0.574  Sum_probs=53.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+...+++||.|+ .+|+.|+||++||+.+...
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~-~~g~~G~fP~nyV~~~~~~   76 (79)
T 1z9q_A           18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGATGIFPLSFVKILKDF   76 (79)
T ss_dssp             CCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEE-ETTEEEEEEGGGEEESSCC
T ss_pred             ceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEE-ECCeEEEecHHHEEECCCC
Confidence            3458999999999999999999999999999889999999 6899999999999987653

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.28  E-value=9e-12  Score=87.49  Aligned_cols=59  Identities=27%  Similarity=0.668  Sum_probs=53.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC----CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~----~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+.+    ++||.++ .+++.||||++||+.+...
T Consensus        13 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   75 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE-VNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEE-SSSCEEEEEGGGEEECCSS
T ss_pred             CeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEE-eCCCEEEEchHHeEECCCC
Confidence            456899999999999999999999999999876    7999998 8899999999999987653

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.1e-11  Score=85.23  Aligned_cols=60  Identities=25%  Similarity=0.602  Sum_probs=54.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+... +++||.|++ .+|+.||||++||+.+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDK   67 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTS
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCc
Confidence            46789999999999999999999999999986 789999996 3899999999999987754

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.28  E-value=3.1e-12  Score=87.18  Aligned_cols=59  Identities=25%  Similarity=0.566  Sum_probs=53.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.+...++|+|++||+|.|+.+.+++||.++ .+++.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEEC-STTCCEEEETTSEEECCSS
T ss_pred             CCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEE-ECCcEEEEchHHEEECCCC
Confidence            3468999999999999999999999999998888999999 7899999999999988754

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.28  E-value=4.5e-12  Score=87.40  Aligned_cols=59  Identities=25%  Similarity=0.443  Sum_probs=53.1

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEe-cCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~-~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+ .+.+||.++ .+++.|+||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT-LNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEE-SSSCEEEEEGGGEEECCSS
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEE-ECCcEEEecHHHEEECCCC
Confidence            3568999999999999999999999999884 678999999 8999999999999988754

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=9.2e-12  Score=87.23  Aligned_cols=60  Identities=27%  Similarity=0.561  Sum_probs=53.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC-CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+.+ ++||.+++.+++.||||++||+.+...
T Consensus        13 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   73 (78)
T 2dl5_A           13 PLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSS   73 (78)
T ss_dssp             SEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCCC
T ss_pred             CcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCCC
Confidence            456999999999999999999999999999875 899999966699999999999887643

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.1e-11  Score=87.05  Aligned_cols=59  Identities=25%  Similarity=0.596  Sum_probs=54.2

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   75 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVELRQSG   75 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEE-ETTEEEEEETTSEEECCCC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEE-ECCcEEEechHHEEECCCC
Confidence            4468999999999999999999999999999889999999 7899999999999987754

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.27  E-value=6.4e-12  Score=83.36  Aligned_cols=56  Identities=34%  Similarity=0.666  Sum_probs=49.2

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC-CCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.++..++|+|++||+|.|+++.+ ++||.++..+|+.|+||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            46899999999999999999999999998754 589999955599999999999753

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.27  E-value=1.3e-11  Score=82.71  Aligned_cols=45  Identities=29%  Similarity=0.773  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         123 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       123 ~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      +.+||+|++||+|.|+++.+++||.++ .+|+.|+||++||+.+..
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~   46 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDS   46 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEECSC
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEE-ECCcEEEEeHHHEEEcCC
Confidence            578999999999999999889999998 789999999999998754

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=9e-12  Score=88.76  Aligned_cols=59  Identities=22%  Similarity=0.302  Sum_probs=53.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEe--cCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~--~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+  .+++||.|+ .+++.|+||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~-~~g~~G~fP~~yv~~~~~~   68 (85)
T 2dlp_A            8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGS-AGGRSGLFPADIVQPAAAP   68 (85)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEE-SSSCEEEEETTSEEECCCS
T ss_pred             CEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEE-ECCEEEEechHHeEECCCc
Confidence            4568999999999999999999999999987  788999999 6899999999999998754

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.27  E-value=9.9e-12  Score=87.25  Aligned_cols=60  Identities=30%  Similarity=0.615  Sum_probs=52.8

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.|++ .+|+.|+||++||+.+...
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   65 (79)
T 3cqt_A            5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL   65 (79)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC---
T ss_pred             CcEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCcc
Confidence            34689999999999999999999999999998899999996 4899999999999988754

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.27  E-value=5.6e-12  Score=86.14  Aligned_cols=60  Identities=27%  Similarity=0.458  Sum_probs=52.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.++...++.||||++||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCSC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECccC
Confidence            356899999999999999999999999999888899999955445599999999987653

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=7.7e-12  Score=85.95  Aligned_cols=59  Identities=25%  Similarity=0.517  Sum_probs=53.8

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.+++ .++.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~~~~   66 (71)
T 2dnu_A            8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRY-LGKEGWAPASYLKKAKDS   66 (71)
T ss_dssp             SEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEE-TTEEEEEEGGGCEECCCC
T ss_pred             CCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEE-CCcEEEEEHHHeEEccCC
Confidence            45799999999999999999999999999988899999994 499999999999988754

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.27  E-value=5.7e-12  Score=86.14  Aligned_cols=58  Identities=33%  Similarity=0.697  Sum_probs=52.8

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++ +++||.++ .+++.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGS-IGDRSGIFPSNYVKPKDSG   65 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEEC-STTCCEEECGGGCEECCCC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEE-eCCcEEEEchHHeEECCCC
Confidence            4578999999999999999999999999998 68999998 7899999999999987654

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.27  E-value=9.5e-12  Score=89.28  Aligned_cols=56  Identities=34%  Similarity=0.654  Sum_probs=51.2

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec-----CCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-----~~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      ...++|+|+|.++..+||+|++||+|.|+.+.     +++||.|+..+|+.||||++||++
T Consensus        29 ~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             CcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            46799999999999999999999999999985     789999996589999999999974

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.26  E-value=8.2e-12  Score=85.57  Aligned_cols=60  Identities=23%  Similarity=0.560  Sum_probs=53.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.+...++|+|++||+|.|+++.+++||.+++. .++.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGP   67 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSSC
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCCC
Confidence            356899999999999999999999999999888899999964 369999999999988654

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=99.26  E-value=1.5e-11  Score=99.19  Aligned_cols=76  Identities=22%  Similarity=0.390  Sum_probs=67.2

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee-CCeEEEEEEEeecCCCcceEEeeCCcccCChhhhhh
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLA   90 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~LV~   90 (288)
                      |||+ +++..+||++|+..  +|.||||+|+. .+.++|+++. ++.+.|+.|...+..     |.+++..|.+|.|||.
T Consensus        15 P~F~-n~s~~qAe~~L~~~--~G~~liRPSsk-~~~ltit~Kv~d~~~~Hi~I~E~~k~-----l~ig~~~fedLDElI~   85 (178)
T 2xp1_A           15 PLFK-NFNVTESENYLRSS--TDDFLIRKGSR-HGYCVLVIKFASDVFVHMKIEEHSEH-----YTCSNKHFEDIDEVIS   85 (178)
T ss_dssp             TTEE-CCCHHHHHHHHHHS--SCCEEEEECSS-TTEEEEEEEEETTEEEEEEEEECSSC-----EEETTEEESSHHHHHH
T ss_pred             CCcC-CCCHHHHHHHHhcC--CCCEEEeecCC-CCcEEEEEEECCCcEEEEEEEECCCE-----EEECCcEECCHHHHHH
Confidence            8999 89999999999873  49999999998 7789999995 889999999875543     8999899999999999


Q ss_pred             hheeccc
Q psy5076          91 FYKVHYL   97 (288)
Q Consensus        91 ~y~~~~l   97 (288)
                      +|.. ++
T Consensus        86 ~yv~-pm   91 (178)
T 2xp1_A           86 VYVR-PI   91 (178)
T ss_dssp             HTHH-HH
T ss_pred             HHHH-HH
Confidence            9988 44

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=1.2e-11  Score=88.12  Aligned_cols=59  Identities=34%  Similarity=0.717  Sum_probs=54.2

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.+...++|+|++||+|.|+++.+++||.+++.+|+.|+||++||+++..
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~   77 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP   77 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECCC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEccC
Confidence            45699999999999999999999999999998889999987789999999999998743

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.26  E-value=1.7e-12  Score=88.25  Aligned_cols=58  Identities=31%  Similarity=0.675  Sum_probs=53.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+.+++||.+++.+|+.||||++||+++.
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            4568999999999999999999999999998888999998778999999999998754

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.26  E-value=1e-11  Score=94.07  Aligned_cols=56  Identities=20%  Similarity=0.302  Sum_probs=49.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~---~~~~G~~P~~~v~~~~  263 (288)
                      ..+++|+|+|  .++..+||+|.+||+|.|+++. +|||.|++   +|+.||||++||+.++
T Consensus        59 ~~~~~Alydy--~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           59 ERHGVAIYNF--QGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CEEEEBCSCB--CCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             ceEEEEcccc--CCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            3479999999  6677889999999999999985 69999999   8999999999998764

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.26  E-value=2.3e-11  Score=85.59  Aligned_cols=60  Identities=13%  Similarity=0.358  Sum_probs=53.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC----CcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS----GEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~----g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.++...    ++.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~   70 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCC
Confidence            4678999999999999999999999999999889999999642    48999999999988754

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.26  E-value=1.6e-11  Score=86.70  Aligned_cols=59  Identities=20%  Similarity=0.531  Sum_probs=53.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec--CCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~--~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..+||+|++||+|.|+.++  +++||.++ .+++.|+||++||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   77 (81)
T 1x43_A           17 NRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGE-RGNQKGKVPITYLELLNSG   77 (81)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEE-ETTEEEEEEGGGEEECCCC
T ss_pred             CeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEE-ECCCEEEEehHHEEECCCC
Confidence            56799999999999999999999999999984  58999999 7999999999999988653

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.26  E-value=7.9e-12  Score=82.33  Aligned_cols=53  Identities=25%  Similarity=0.540  Sum_probs=48.8

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecC-CCeEEEEeC-CCcEEEEeCCCeE
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNI-SGEVGSIPVPYVQ  164 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-~~ww~~~~~-~g~~G~vP~~~v~  164 (288)
                      .++|+++|.++..++|+|++||+|.|+...+ ++||.+++. +++.|+||++||+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            4789999999999999999999999999886 799999964 8999999999986

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.25  E-value=1.3e-11  Score=86.78  Aligned_cols=59  Identities=31%  Similarity=0.738  Sum_probs=52.6

Q ss_pred             eeEEeeeccCCCCCCC-CCCCCCCCEEEEEEecCC-----CeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKDEE-----HWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~-eLs~~~g~~i~vl~~~~~-----~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.+...+ +|+|++||+|.|+.+.+.     +||.|++.+|+.||||++||+.+..
T Consensus        14 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   78 (80)
T 2v1r_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR   78 (80)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC--
T ss_pred             CEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCC
Confidence            4679999999999999 999999999999998876     9999996589999999999998754

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.25  E-value=3.7e-12  Score=91.78  Aligned_cols=58  Identities=26%  Similarity=0.248  Sum_probs=48.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEe-------------CCC--CeeEEEe--CCeeeEecCCcEEEcCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKT-------------NIN--GQWEGEL--NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~-------------~~~--~w~~~~~--~~~~G~~P~~~v~~~~~  264 (288)
                      ...++|+|+|  .++.++||+|.+||+|.|+++             .++  |||.|+.  +|+.||||++||+.+..
T Consensus        11 ~~~~~Alydy--~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           11 GFQYRALYPF--RRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             EEEEEECSCB--CCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEE
T ss_pred             CcEEEEeeeE--CCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecc
Confidence            4479999999  567888999999999999843             234  8999987  58999999999998854

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.25  E-value=2.2e-13  Score=93.79  Aligned_cols=60  Identities=23%  Similarity=0.306  Sum_probs=52.3

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeee-EecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTG-HFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G-~~P~~~v~~~~~~~~  267 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.| |||++||+.+....+
T Consensus         7 ~~~~al~dy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~~~~   67 (71)
T 1hsq_A            7 CAVKALFDY--KAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEG   67 (71)
T ss_dssp             SCCCCSSCC--CCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSCCCC
T ss_pred             eEEEECCCC--CcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCCccc
Confidence            368899999  567778999999999999999999999999988886 999999998865443

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1.7e-11  Score=87.94  Aligned_cols=59  Identities=25%  Similarity=0.545  Sum_probs=54.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+.+++||.++. +++.||||++||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~-~g~~G~~P~~yv~~~~~~   75 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSY-NGQVGWFPSNYVTEEGDS   75 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEE-TTEEEEEEGGGEEECCCC
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEE-CCcEEEEehHHEEECCCc
Confidence            45689999999999999999999999999998899999994 899999999999988755

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.25  E-value=1.1e-11  Score=84.85  Aligned_cols=60  Identities=22%  Similarity=0.435  Sum_probs=54.2

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.+++ .+++.|+||++||+++...
T Consensus         7 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2cuc_A            7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGP   67 (70)
T ss_dssp             SCCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCT
T ss_pred             CcEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcCC
Confidence            34689999999999999999999999999998889999995 6899999999999987653

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.24  E-value=1.6e-11  Score=87.17  Aligned_cols=60  Identities=28%  Similarity=0.589  Sum_probs=54.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+.+++||.|+. .+|+.|+||++||+++...
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   66 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI   66 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTC
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCc
Confidence            35689999999999999999999999999998899999996 4899999999999987764

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.24  E-value=6.7e-12  Score=91.54  Aligned_cols=64  Identities=20%  Similarity=0.477  Sum_probs=56.0

Q ss_pred             cceeeEEeeeccCCCCC------CCCCCCCCCCEEEEE-EecCCCeEEEEeCCCcEEEEeCCCeEecccCC
Q psy5076         107 TKTIEKVIAKYDFDGND------PDDLPFKKNDILIVV-SKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM  170 (288)
Q Consensus       107 ~~~~~~~~a~~~~~~~~------~~eLs~~~g~~i~vl-~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~  170 (288)
                      ......++|+|+|.++.      .++|+|++||+|.|+ ...+++||.++..+|+.||||++||+.+....
T Consensus        14 ~~~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~~   84 (96)
T 1wie_A           14 SGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             TSCEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCC
T ss_pred             CCCCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCCCC
Confidence            33356799999999988      999999999999999 77788999999558999999999999887653

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=1.6e-11  Score=88.07  Aligned_cols=59  Identities=29%  Similarity=0.637  Sum_probs=53.8

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+.+++||.++ ..++.|+||++||+.+...
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   75 (88)
T 1x2q_A           17 ARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE-NHRGIGLFPSNFVTTNLNI   75 (88)
T ss_dssp             CEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEE-ETTEEEEECGGGEESCSSC
T ss_pred             CeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEE-ECCcEEEEehHHEEEcCCc
Confidence            4679999999999999999999999999998889999999 5688999999999987654

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=1.2e-11  Score=86.78  Aligned_cols=59  Identities=20%  Similarity=0.475  Sum_probs=53.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++ +++||.+++. +++.||||++||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   76 (79)
T 1x6b_A           17 LPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISGP   76 (79)
T ss_dssp             CCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEESS
T ss_pred             CCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCCC
Confidence            4579999999999999999999999999999 8899999964 899999999999987653

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.24  E-value=1.8e-11  Score=81.92  Aligned_cols=57  Identities=25%  Similarity=0.445  Sum_probs=50.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      ...++|+++|.++..++|+|++||+|.|+.+. +.+||.++ .+|+.|+||++||+++.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ-TKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEE-ETTEEEEEEGGGEEESC
T ss_pred             CEEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEE-ECCCeEEEehHHeEECC
Confidence            35689999999999999999999999999954 56699999 58999999999998864

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.24  E-value=1.3e-11  Score=83.87  Aligned_cols=58  Identities=17%  Similarity=0.370  Sum_probs=51.3

Q ss_pred             eeEEeeeccCCC-CCCCCCCCCCCCEEEEEEe-cCCCeEEEEeC-CCcEEEEeCCCeEecc
Q psy5076         110 IEKVIAKYDFDG-NDPDDLPFKKNDILIVVSK-DEEHWWTAQNI-SGEVGSIPVPYVQKYS  167 (288)
Q Consensus       110 ~~~~~a~~~~~~-~~~~eLs~~~g~~i~vl~~-~~~~ww~~~~~-~g~~G~vP~~~v~~~~  167 (288)
                      ...++|+++|.+ +..++|+|++||+|.|+.+ .+++||.|+.. +++.|+||++||+.+.
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            356899999996 8999999999999999986 67899999964 4999999999998764

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.24  E-value=1.3e-11  Score=84.98  Aligned_cols=60  Identities=20%  Similarity=0.361  Sum_probs=52.8

Q ss_pred             eeEEeeeccCCC-CCCCCCCCCCCCEEEEEEe-cCCCeEEEEeC-CCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDG-NDPDDLPFKKNDILIVVSK-DEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~-~~~~eLs~~~g~~i~vl~~-~~~~ww~~~~~-~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.+ +..++|+|++||+|.|+.+ .+++||.|++. +++.||||++||+.+...
T Consensus         7 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   69 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCCC
Confidence            356899999996 8999999999999999987 67899999964 499999999999988653

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.24  E-value=1.7e-11  Score=85.64  Aligned_cols=59  Identities=32%  Similarity=0.646  Sum_probs=53.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC--CcE------EEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--GEV------GSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~--g~~------G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.+...++|+|++||+|.|+++.+++||.++...  ++.      ||||++||+++..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~   73 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSG   73 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCC
Confidence            4579999999999999999999999999999889999999654  788      9999999998764

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=2.9e-11  Score=82.80  Aligned_cols=60  Identities=20%  Similarity=0.450  Sum_probs=52.8

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC-CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.+...++|+|++||+|.|++..+ ++||.+++.+++.||||++||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct4_A            7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSGP   67 (70)
T ss_dssp             SCEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCCC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCCC
Confidence            356999999999999999999999999999764 569999966699999999999987653

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=2.9e-11  Score=85.26  Aligned_cols=58  Identities=22%  Similarity=0.495  Sum_probs=52.1

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCC-CeEEEEe-CCCcEEEEeCCCeEecc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQN-ISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~-~ww~~~~-~~g~~G~vP~~~v~~~~  167 (288)
                      ...++|+|+|.+...++|+|++||+|.|+++.++ +||.+++ .+++.|+||++||++..
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   76 (81)
T 1x6g_A           17 GTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERS   76 (81)
T ss_dssp             TCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEcc
Confidence            4569999999999999999999999999998765 9999986 47999999999998754

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.24  E-value=1.1e-11  Score=87.82  Aligned_cols=59  Identities=25%  Similarity=0.411  Sum_probs=52.4

Q ss_pred             eeEEeeeccC-CCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDF-DGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-----GEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~-~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~-----g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+| .++..++|+|++||+|.|+++.+++||.|+..+     ++.|+||++||+.+..
T Consensus        18 ~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~~   82 (83)
T 2ke9_A           18 SLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVSK   82 (83)
T ss_dssp             CEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSCC
T ss_pred             CeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECCC
Confidence            4579999999 799999999999999999999888999999643     6999999999987653

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.4e-11  Score=85.79  Aligned_cols=59  Identities=22%  Similarity=0.534  Sum_probs=52.4

Q ss_pred             eeEEeeeccCCCCC-------CCCCCCCCCCEEEEEEecC-CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGND-------PDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~-------~~eLs~~~g~~i~vl~~~~-~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++.       .++|+|++||+|.|+.+.+ ++||.++ .+++.||||++||+.+...
T Consensus         7 ~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   73 (76)
T 2csi_A            7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGE-LNGQKGLVPSNFLEEVSGP   73 (76)
T ss_dssp             SEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEE-ETTEEEEEEGGGCCBCCCC
T ss_pred             ccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEE-ECCcEEEEehHHEEECCCC
Confidence            45789999999998       9999999999999999865 4899999 5899999999999887643

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.7e-11  Score=88.36  Aligned_cols=61  Identities=28%  Similarity=0.574  Sum_probs=54.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEecccCC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEGM  170 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~~~~~  170 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+.+++||.|++. +++.||||++||+.+....
T Consensus        17 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~~~   78 (90)
T 2yup_A           17 YGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPR   78 (90)
T ss_dssp             SEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEECCC
T ss_pred             ceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCCCc
Confidence            467999999999999999999999999999888999999953 4899999999999987653

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.6e-11  Score=84.90  Aligned_cols=59  Identities=24%  Similarity=0.619  Sum_probs=52.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec--CCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~--~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.  +++||.++ .+++.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   67 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGE-TNGRIGWFPSTYVEEEGIQ   67 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEE-ETTEEEEECSSSEEECCCC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEE-ECCeEEEeehHHEEEcCCC
Confidence            34689999999999999999999999999987  45999999 6899999999999987643

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.23  E-value=1.7e-11  Score=83.98  Aligned_cols=58  Identities=40%  Similarity=0.725  Sum_probs=50.8

Q ss_pred             eEEeeeccCCCCCCC--CCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPD--DLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~--eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+++|.+...+  +|+|++||+|.|+.. +++||.|++.+|+.|+||++||+.+...
T Consensus         6 ~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   65 (70)
T 2vkn_A            6 YKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDGP   65 (70)
T ss_dssp             EEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEEE
T ss_pred             EEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCCC
Confidence            468999999998655  999999999999986 6899999877999999999999987643

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=2.7e-11  Score=85.03  Aligned_cols=59  Identities=27%  Similarity=0.440  Sum_probs=52.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|++ .+++||.+++. +++.||||++||+++..+
T Consensus        17 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~~~p   76 (79)
T 2cud_A           17 SDFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARVSGP   76 (79)
T ss_dssp             CCEEEESSCSSCTTTSCCSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEECCC
T ss_pred             CeEEEEccCCCCCCCCcCCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEccCC
Confidence            457999999999999999999999999999 46789999964 589999999999987653

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.23  E-value=2.1e-11  Score=101.04  Aligned_cols=57  Identities=25%  Similarity=0.295  Sum_probs=50.3

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEE-----eCCCCeeEEEe----------CCeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTK-----TNINGQWEGEL----------NGKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~-----~~~~~w~~~~~----------~~~~G~~P~~~v~~~~  263 (288)
                      ..+++|||+|  .+...+||+|.+||+|.|++     ..++|||.|+.          +|+.||||.+||+.+.
T Consensus       142 ~~~~rALYdY--~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l~  213 (213)
T 1mv3_A          142 MFKVQAQHDY--TATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERVP  213 (213)
T ss_dssp             CEEEEESSCB--CCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEEC
T ss_pred             ceEEEECCCc--CCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEECc
Confidence            3479999999  66778899999999999999     78899999986          4889999999999863

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=87.20  Aligned_cols=59  Identities=36%  Similarity=0.684  Sum_probs=53.1

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC--CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~--~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+.+  ++||.++. +++.||||++||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~~~~   77 (80)
T 2d8h_A           17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKL-RGQTGIFPANYVTMNSGP   77 (80)
T ss_dssp             CEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEE-TTEEEEEEGGGCCBCCCC
T ss_pred             CEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEE-CCEEEEEchhHeEEcCCC
Confidence            567999999999999999999999999999875  89999995 899999999999876543

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.22  E-value=1.1e-11  Score=86.27  Aligned_cols=59  Identities=29%  Similarity=0.611  Sum_probs=54.1

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.++..++|+|++||+|.|+++.+++||.++ .+++.||||++||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   68 (76)
T 1ujy_A           10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT-LNGRTGWFPSNYVREIKSS   68 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEE-ETTEEEEECTTTSEECCHH
T ss_pred             CEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEE-ECCCEEEechHHEEECCcc
Confidence            4568999999999999999999999999998889999999 6899999999999988654

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.22  E-value=1.8e-11  Score=84.36  Aligned_cols=57  Identities=28%  Similarity=0.665  Sum_probs=51.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC--CCcE---EEEeCCCeEecc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEV---GSIPVPYVQKYS  167 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~--~g~~---G~vP~~~v~~~~  167 (288)
                      ...++|+|+|.+...++|+|++||+|.| .+.+++||.|+..  +|+.   ||||++||+++.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            4579999999999999999999999999 8888999999964  6899   999999998764

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.22  E-value=1.7e-11  Score=91.07  Aligned_cols=64  Identities=19%  Similarity=0.308  Sum_probs=53.3

Q ss_pred             ccceeeEEeeeccCCCCCCCCCCCCCCCEEEEEEe-cCC--CeEEEEeCC-------CcEEEEeCCCeEecccC
Q psy5076         106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEE--HWWTAQNIS-------GEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       106 ~~~~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~-~~~--~ww~~~~~~-------g~~G~vP~~~v~~~~~~  169 (288)
                      |......++|+|+|.++..++|+|++||+|.|+.+ .+.  +||.|+..+       |+.||||+|||+++...
T Consensus        18 c~~~~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~   91 (108)
T 1i1j_A           18 CSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   91 (108)
T ss_dssp             CCSCSEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             cCceeeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEcccc
Confidence            33345679999999999999999999999999998 233  499999542       89999999999987643

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.22  E-value=2.9e-11  Score=87.47  Aligned_cols=60  Identities=30%  Similarity=0.720  Sum_probs=54.6

Q ss_pred             eeEEeeeccCCCCCCC-CCCCCCCCEEEEEEecCC-----CeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKDEE-----HWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~-eLs~~~g~~i~vl~~~~~-----~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.+...+ +|+|++||+|.|+.+.+.     +||.|++.+|+.||||++||+.+...
T Consensus        14 ~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~   79 (92)
T 1jqq_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (92)
T ss_dssp             CEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC
T ss_pred             CEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCC
Confidence            5679999999999999 999999999999998876     99999966899999999999988754

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.21  E-value=2.9e-11  Score=83.74  Aligned_cols=58  Identities=28%  Similarity=0.559  Sum_probs=52.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.+...++|+|++||+|.|++++ ++||.++ .+++.||||++||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~-~~g~~G~~P~~yv~~~~~~   67 (74)
T 1j3t_A           10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGE-VHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-SSEEEEE-STTCCCEEEGGGEEECCCS
T ss_pred             CeEEEECCCCCCCCCCccCCCCCCEEEEEecC-CCEEEEE-ECCcEEEEchHHeEECCCC
Confidence            35689999999999999999999999999985 7899999 6899999999999988764

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3.1e-11  Score=88.17  Aligned_cols=60  Identities=23%  Similarity=0.502  Sum_probs=52.9

Q ss_pred             eeeEEeeeccCCCC--------CCCCCCCCCCCEEEEEEe-cCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         109 TIEKVIAKYDFDGN--------DPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       109 ~~~~~~a~~~~~~~--------~~~eLs~~~g~~i~vl~~-~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      +...++|+|+|.+.        ..++|+|++||+|.|+.+ ++++||.++ .+|+.||||++||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   84 (97)
T 2csq_A           16 PARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGE-TCARLGLIPCNMVSEIQAD   84 (97)
T ss_dssp             CCEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEE-ETTEEEEEETTTSEECCCC
T ss_pred             CceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEE-ECCcEEEEehHHeEECCCC
Confidence            35678999999999        799999999999999965 557899999 5899999999999998754

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.20  E-value=2.9e-11  Score=84.63  Aligned_cols=43  Identities=33%  Similarity=0.568  Sum_probs=38.9

Q ss_pred             CCeeeecCCCEEEEEEeC-CCCeeEEE--eCCeeeEecCCcEEEcC
Q psy5076         221 KTALKLEIGDIIKVTKTN-INGQWEGE--LNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       221 ~~eLs~~~g~~v~v~~~~-~~~w~~~~--~~~~~G~~P~~~v~~~~  263 (288)
                      .+||+|.+||+|.|+++. ++|||.|+  .+|+.||||++||+++.
T Consensus        32 ~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           32 GGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             CCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             CCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            479999999999999995 89999998  47999999999999863

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.20  E-value=2.3e-11  Score=86.85  Aligned_cols=55  Identities=31%  Similarity=0.677  Sum_probs=50.2

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      ...++|+|+|.+...++|+|++||+|.|++. +++||.|++.+|+.|+||++||++
T Consensus        31 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           31 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             CEEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             ceEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            3568999999999999999999999999997 679999997789999999999964

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.20  E-value=1.8e-11  Score=84.77  Aligned_cols=58  Identities=36%  Similarity=0.760  Sum_probs=51.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+++|.++..++|+|++||+|.|+++. +.+||.++ .+|+.|+||++||+.+..
T Consensus         9 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~   67 (74)
T 1gbq_A            9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE-LNGKDGFIPKNYIEMKPH   67 (74)
T ss_dssp             -CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEE-ETTEEEEEEGGGEEEEC-
T ss_pred             CeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEE-ECCCEEEEehHhEEEcCC
Confidence            34689999999999999999999999999987 56899999 689999999999987654

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.20  E-value=5.4e-11  Score=84.85  Aligned_cols=58  Identities=31%  Similarity=0.660  Sum_probs=52.8

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.++..++|+|++||+|.|+++. ++||.|++ .+|+.||||++||+.+..
T Consensus        25 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~   83 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   83 (86)
T ss_dssp             SEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGG
T ss_pred             CcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEccc
Confidence            46799999999999999999999999999988 69999996 489999999999998754

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.19  E-value=2.3e-11  Score=84.26  Aligned_cols=61  Identities=18%  Similarity=0.455  Sum_probs=53.1

Q ss_pred             cceeeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC--CCcEEEEeCCCeEeccc
Q psy5076         107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       107 ~~~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~--~g~~G~vP~~~v~~~~~  168 (288)
                      +.....++|+++|.++..++|+|++||+|.|++.+ ++||.|+..  +|+.|+||++||+....
T Consensus         8 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A            8 KREEKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             CSCCSCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCC
T ss_pred             CCCCeEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEecc
Confidence            33356789999999999999999999999999986 789999864  68999999999987654

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.19  E-value=5.1e-12  Score=89.63  Aligned_cols=57  Identities=30%  Similarity=0.362  Sum_probs=48.0

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEe---------------CCCCeeEEEe--CCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT---------------NINGQWEGEL--NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~---------------~~~~w~~~~~--~~~~G~~P~~~v~~~~~  264 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++               .+.|||.|+.  +|+.||||++||+.+..
T Consensus         6 ~~~~Alydy--~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            6 YQYRALYDY--KKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEECSCB--CCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             cEEEEcccc--CCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            468999999  567788999999999999965               2349999965  58999999999998754

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.19  E-value=2.3e-11  Score=83.33  Aligned_cols=43  Identities=33%  Similarity=0.568  Sum_probs=38.3

Q ss_pred             CCeeeecCCCEEEEEEe-CCCCeeEEE--eCCeeeEecCCcEEEcC
Q psy5076         221 KTALKLEIGDIIKVTKT-NINGQWEGE--LNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       221 ~~eLs~~~g~~v~v~~~-~~~~w~~~~--~~~~~G~~P~~~v~~~~  263 (288)
                      .+||+|++||+|.|+++ .+++||.|+  .+|+.||||++||+++.
T Consensus        24 ~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           24 GPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             SCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            44999999999999999 688999994  57999999999999863

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.19  E-value=7.5e-11  Score=87.98  Aligned_cols=59  Identities=31%  Similarity=0.708  Sum_probs=54.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.+...++|+|++||+|.|+.+.+++||.+++ .+++.|+||++||+++..
T Consensus        27 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   86 (109)
T 2yt6_A           27 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADS   86 (109)
T ss_dssp             CCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSS
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCc
Confidence            46799999999999999999999999999998899999997 689999999999998754

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.19  E-value=4.2e-13  Score=93.90  Aligned_cols=54  Identities=15%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEE
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEF  261 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~  261 (288)
                      .+++|+|+|  .+...+||+|.+||+|.|+++.+++||.++. +|+.||||++||+.
T Consensus        21 ~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           21 TLVIALYDY--QTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SCCCCCCCB--CCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             eEEEECccC--CCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEE
Confidence            368999999  5677889999999999999998999999985 89999999999975

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.19  E-value=7.9e-12  Score=90.28  Aligned_cols=60  Identities=25%  Similarity=0.565  Sum_probs=55.0

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM  170 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~  170 (288)
                      ...++|+|+|.++..++|+|++||+|.|+...+++||.|+ .+|+.|+||++||+.+....
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~-~~g~~G~fPsnyV~~~~~~~   77 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGMFPSNFIKELSGES   77 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCE-ETTEECCBCSSSEECCSSCS
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEE-ECCeEEEeehHHEEECCCCC
Confidence            4579999999999999999999999999998889999999 68999999999999887653

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.18  E-value=2.2e-11  Score=89.14  Aligned_cols=62  Identities=34%  Similarity=0.752  Sum_probs=55.7

Q ss_pred             cceeeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       107 ~~~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..+...++|+|+|.++..++|+|++||+|.|+.+.+++||.++ .+++.||||++||+.+...
T Consensus        31 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   92 (98)
T 1udl_A           31 FHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGLFPSNYVKMTTDS   92 (98)
T ss_dssp             CCCSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCB-SSSCBCCEETTSEEECCCC
T ss_pred             CCCceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEE-ECCcEEEEehHHeEEcCCC
Confidence            3345679999999999999999999999999999888999998 7899999999999987654

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=5.5e-11  Score=86.32  Aligned_cols=60  Identities=22%  Similarity=0.439  Sum_probs=53.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec--C--CCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--E--EHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~--~--~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..+||+|++||+|.|+.+.  +  ++||.|++ .+++.|+||++||+.+...
T Consensus        16 ~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   80 (94)
T 2e5k_A           16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADEC   80 (94)
T ss_dssp             CEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCSC
T ss_pred             CeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcccC
Confidence            46799999999999999999999999999873  4  89999997 6899999999999988643

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.15  E-value=6.1e-11  Score=79.42  Aligned_cols=46  Identities=20%  Similarity=0.434  Sum_probs=42.3

Q ss_pred             CCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         220 DKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       220 ~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      +++||+|.+||+|.|+++.+++||.++.+|+.||||++||+.+...
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   47 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   47 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCS
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCCC
Confidence            3569999999999999999999999999999999999999998654

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.15  E-value=1.6e-11  Score=101.13  Aligned_cols=59  Identities=19%  Similarity=0.327  Sum_probs=53.3

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      ...++|+|+|  .+...+||+|.+||+|.|+++.++|||.|+.+|+.||||++||+.+...
T Consensus        11 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   69 (193)
T 1ng2_A           11 LQTYRAIADY--EKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSP   69 (193)
T ss_dssp             CEEEECSSCB--CCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSCS
T ss_pred             CcEEEEcCCc--CCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeeccc
Confidence            3479999999  5677789999999999999999999999999999999999999987665

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.13  E-value=5.4e-11  Score=96.36  Aligned_cols=55  Identities=20%  Similarity=0.246  Sum_probs=49.8

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEE
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEF  261 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~  261 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.++|||.|+ .+|+.||||++||+.
T Consensus       118 ~~~~~alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          118 IEVVVGTFKF--TGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             SEEEEESSCB--CCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             ccEEEEecCc--ccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            4479999999  567788999999999999999999999999 589999999999974

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.13  E-value=1.3e-10  Score=83.61  Aligned_cols=58  Identities=36%  Similarity=0.743  Sum_probs=51.5

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+|+|.++..++|+|++||+|.|+.. +++||.|+. .+|+.|+||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCC
Confidence            358899999999999999999999999997 478999996 5799999999999987653

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.13  E-value=4.8e-11  Score=84.57  Aligned_cols=59  Identities=29%  Similarity=0.454  Sum_probs=51.0

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEe---------------cCCCeEEEEeC-CCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHWWTAQNI-SGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~---------------~~~~ww~~~~~-~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+               ++.+||.|++. +|+.|+||++||+.+..
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            4578999999999999999999999999964               23489999864 59999999999998764

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.12  E-value=8.8e-11  Score=89.07  Aligned_cols=58  Identities=22%  Similarity=0.431  Sum_probs=52.8

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe--CCCcEEEEeCCCeEecccC
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN--ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~--~~g~~G~vP~~~v~~~~~~  169 (288)
                      .++|+|+|.++..++|+|++||+|.|+.+.+++||.|++  ..|+.|+||++||+.+...
T Consensus         5 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~   64 (120)
T 2kym_A            5 FAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLM   64 (120)
T ss_dssp             EEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSS
T ss_pred             EEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCC
Confidence            588999999999999999999999999999899999986  5688999999999987543

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.12  E-value=2.6e-11  Score=90.04  Aligned_cols=57  Identities=25%  Similarity=0.468  Sum_probs=50.7

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcE---EEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV---GSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~---G~vP~~~v~~~~~  168 (288)
                      ..++|+|+|.++..+||+|++||+|.|+.+.+++||.++ .+++.   |+||++||+.+..
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~-~~g~~g~~G~fPsnYV~~~~~   65 (108)
T 2rqv_A            6 LYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAK-PIGRLGGPGLVPVGFVSIIDI   65 (108)
T ss_dssp             CCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEEC-CSSSSCCCEEEESTTCBCCCS
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEE-ECCccCCeeEeecceEEEecC
Confidence            458999999999999999999999999998889999998 45555   9999999987754

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.12  E-value=9.6e-11  Score=84.85  Aligned_cols=60  Identities=27%  Similarity=0.526  Sum_probs=52.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC----CCeEEEEeCCCc-EEEEeCCCeEecccCC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGE-VGSIPVPYVQKYSEGM  170 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~----~~ww~~~~~~g~-~G~vP~~~v~~~~~~~  170 (288)
                      ...++|+|+|.+...+||+|++||+|.|+.+.+    .+||.++ .+++ .||||++||+.+....
T Consensus        17 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~-~~~~~~G~~P~~yv~~~~~~~   81 (93)
T 1wxu_A           17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLAS-LDGQTTGLIPANYVKILGKRR   81 (93)
T ss_dssp             BBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEE-SSSSSCEEECSTTEEECCCBC
T ss_pred             CEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEE-eCCcCEEEEehHHEEEcCCcc
Confidence            456899999999999999999999999999876    5999998 5555 9999999999887653

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.12  E-value=1.4e-10  Score=90.53  Aligned_cols=59  Identities=31%  Similarity=0.684  Sum_probs=53.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+. +++||.|+ .+|+.||||++||+.+...
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~~   64 (142)
T 2kbt_A            5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGE-IYGRIGWFPSNYVEEDYSE   64 (142)
T ss_dssp             CCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEE-ETTEEEEEETTSEEESSCC
T ss_pred             CeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEE-ECCeeEEechHHEEEcccc
Confidence            45689999999999999999999999999984 78999999 6899999999999988654

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.11  E-value=3.6e-12  Score=89.09  Aligned_cols=56  Identities=32%  Similarity=0.697  Sum_probs=51.4

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+|+|.+...++|+|++||+|.|+++.+++||.+++.+|+.||||++||++.
T Consensus        21 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           21 TLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEK   76 (77)
T ss_dssp             SCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCCC
T ss_pred             eEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEEc
Confidence            45899999999999999999999999999888899999866899999999999753

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.11  E-value=6.8e-11  Score=103.00  Aligned_cols=60  Identities=23%  Similarity=0.351  Sum_probs=54.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..++|+|||  .+..++||+|.+||+|.|+++.++|||.|+.+|+.||||++||+.+.+..+
T Consensus         3 ~~~~a~~~~--~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~   62 (283)
T 3jv3_A            3 CQVIGMYDY--TAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDP   62 (283)
T ss_dssp             EEEEESSCB--CCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEGGGSCH
T ss_pred             eEEEEcccc--CCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCccccccCcccc
Confidence            468999999  567778999999999999999999999999999999999999999876554

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.10  E-value=1e-10  Score=84.10  Aligned_cols=59  Identities=25%  Similarity=0.407  Sum_probs=50.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEe---------------cCCCeEEEEe-CCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHWWTAQN-ISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~---------------~~~~ww~~~~-~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.++..+||+|++||+|.|+..               ++.+||.|++ .+|+.|+||++||+.+..
T Consensus        11 ~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           11 GFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEE
T ss_pred             CcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecc
Confidence            4578999999999999999999999999853               2238999986 359999999999998764

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.09  E-value=7.9e-12  Score=85.90  Aligned_cols=58  Identities=29%  Similarity=0.552  Sum_probs=51.7

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEE-EEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVG-SIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G-~vP~~~v~~~~~~  169 (288)
                      ..++|+++|.++..++|+|++||+|.|+.+.+++||.|+ .+++.| |||++||+.+...
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~gG~~P~~yv~~~~~~   65 (71)
T 1hsq_A            7 CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGD-YGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCB-CSSSCSCCEETTTCCSCSCC
T ss_pred             eEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEE-ECCeEEeEEChHHcEECCCc
Confidence            468899999999999999999999999999889999999 567776 9999999887654

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.08  E-value=8.3e-11  Score=88.45  Aligned_cols=58  Identities=24%  Similarity=0.503  Sum_probs=51.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEE-----ecCCCeEEEEeC---------CCcEEEEeCCCeEecc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-----KDEEHWWTAQNI---------SGEVGSIPVPYVQKYS  167 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~-----~~~~~ww~~~~~---------~g~~G~vP~~~v~~~~  167 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.     ..+++||.|++.         +|+.|+||++||+.++
T Consensus        44 ~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l~  115 (115)
T 1bb9_A           44 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ  115 (115)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             ceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEECc
Confidence            457999999999999999999999999999     678899999752         3789999999998763

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.08  E-value=3.6e-10  Score=78.98  Aligned_cols=57  Identities=26%  Similarity=0.459  Sum_probs=47.1

Q ss_pred             eEEeeeccCCCC---CCCCCCCCCCCEEEEEEec-CCCeEEEEe-CCCcEEEEeCCCeEecc
Q psy5076         111 EKVIAKYDFDGN---DPDDLPFKKNDILIVVSKD-EEHWWTAQN-ISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       111 ~~~~a~~~~~~~---~~~eLs~~~g~~i~vl~~~-~~~ww~~~~-~~g~~G~vP~~~v~~~~  167 (288)
                      ..+.+.++|.++   ..++|+|++||+|.|+.+. +++||.|++ .+|+.|+||++||+++.
T Consensus        16 ~~~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           16 EVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             EECSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             EEEEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            344566666664   3699999999999999985 889999997 68999999999998753

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.07  E-value=2.1e-10  Score=86.82  Aligned_cols=57  Identities=18%  Similarity=0.374  Sum_probs=51.1

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC--CCcEEEEeCCCeEecc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYS  167 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~--~g~~G~vP~~~v~~~~  167 (288)
                      ...++|+|+|.++..+||+|++||+|.|++++ ++||.|+..  +|+.|+||++||+.+.
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            56799999999999999999999999999986 599999952  7899999999997653

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.06  E-value=1.7e-10  Score=94.19  Aligned_cols=57  Identities=19%  Similarity=0.274  Sum_probs=49.9

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCcEEEcCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~---~~~~G~~P~~~v~~~~~~  265 (288)
                      .+++|+|+|  .+..++||+|.+||+|.|+++.+ |||.|++   +|+.||||++||+.+...
T Consensus        18 ~~~~Alydf--~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~~   77 (184)
T 3a98_A           18 RHGVAIYNF--QGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEVT   77 (184)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC-
T ss_pred             eEEEEeeee--CCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEeccc
Confidence            389999999  56777899999999999999876 5999998   789999999999998653

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.06  E-value=3.4e-11  Score=101.88  Aligned_cols=60  Identities=25%  Similarity=0.402  Sum_probs=53.9

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      .+++|+|||  .+...+||+|.+||+|.|+++.++|||.++ .+|+.||||++||+.+....+
T Consensus       137 ~~~~al~dy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~  197 (230)
T 2dvj_A          137 EYVRALFDF--NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA  197 (230)
T ss_dssp             CCCBCCSCC--CCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSSCC
T ss_pred             eeEEEeeee--cCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCCCc
Confidence            468999999  567788999999999999999999999998 789999999999999976654

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.06  E-value=7.3e-11  Score=82.37  Aligned_cols=49  Identities=20%  Similarity=0.422  Sum_probs=44.4

Q ss_pred             CCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       218 ~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ++..+||+|.+||+|.|+++.+++||.++++|+.||||++||+.+....
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   50 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT   50 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCCSS
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCCCC
Confidence            4567799999999999999999999999999999999999999997653

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.05  E-value=2.7e-10  Score=101.98  Aligned_cols=60  Identities=23%  Similarity=0.297  Sum_probs=54.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..++|+|+|  .+..++||+|.+||+|.|+++.++|||.|+++|+.||||++||+.+....+
T Consensus       175 ~~~~alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~  234 (341)
T 2dyb_A          175 PRAEALFDF--TGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPE  234 (341)
T ss_dssp             CEEEESSCB--CCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCCC
T ss_pred             cEEEEEEee--CCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCCCc
Confidence            479999999  567788999999999999999999999999999999999999999866543

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.04  E-value=5.6e-10  Score=76.27  Aligned_cols=51  Identities=27%  Similarity=0.451  Sum_probs=42.3

Q ss_pred             ccCCCCCCCCCCCCCCCEEEEEEe-cCCCeEEEEe-CCCcEEEEeCCCeEecc
Q psy5076         117 YDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQN-ISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       117 ~~~~~~~~~eLs~~~g~~i~vl~~-~~~~ww~~~~-~~g~~G~vP~~~v~~~~  167 (288)
                      +++.+++.++|+|++||+|.|+++ .+++||.|++ .+++.|+||++||+++.
T Consensus        17 ~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           17 PPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             SCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            334444566999999999999998 5789999974 78999999999998754

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.03  E-value=2.4e-10  Score=94.65  Aligned_cols=57  Identities=25%  Similarity=0.511  Sum_probs=51.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEE-----ecCCCeEEEEeC---------CCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-----KDEEHWWTAQNI---------SGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~-----~~~~~ww~~~~~---------~g~~G~vP~~~v~~~  166 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.     ..++|||.|+..         +|+.||||++||+.+
T Consensus       142 ~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          142 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             CEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             ceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            457999999999999999999999999999     678899999953         589999999999875

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.02  E-value=4.7e-10  Score=90.84  Aligned_cols=56  Identities=16%  Similarity=0.349  Sum_probs=50.3

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  264 (288)
                      .+++|+|||  .+..++||+|.+||+|.|+++ +++||.++.  +|+.||||++||+.+..
T Consensus        13 ~~~~alydy--~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~~   70 (175)
T 4d8k_A           13 NLVIALHSY--EPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANS   70 (175)
T ss_dssp             CEEEESSCB--CCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             cEEEEccCc--CCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeecccccccccc
Confidence            379999999  567788999999999999999 789999998  79999999999998754

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.98  E-value=5.8e-10  Score=103.97  Aligned_cols=60  Identities=22%  Similarity=0.348  Sum_probs=54.3

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..+++|+|||  .+..++||+|.+||+|.|+++.++|||.|+++|+.||||++||+.+.+..
T Consensus        30 ~~~~~al~~~--~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   89 (466)
T 2pz1_A           30 VVCAEALWDH--VTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQD   89 (466)
T ss_dssp             CEEEEESSCB--CCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCC-
T ss_pred             ccEEEEcccc--CCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeeccCcc
Confidence            4579999999  56778899999999999999999999999999999999999999987654

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=98.98  E-value=9.5e-10  Score=96.86  Aligned_cols=61  Identities=25%  Similarity=0.397  Sum_probs=54.4

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++ .+|+.||||++||+.+....+
T Consensus       134 ~~~~~alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~  195 (304)
T 2eyz_A          134 AEYVRALFDF--NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA  195 (304)
T ss_dssp             CCEEEECSCC--CCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCSTT
T ss_pred             ceeEEEEeee--cCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCCCc
Confidence            3479999999  567788999999999999999999999998 689999999999999976643

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.91  E-value=6.3e-10  Score=77.08  Aligned_cols=53  Identities=15%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEe----CCeeeEecCCcE
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGEL----NGKTGHFPFTHV  259 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~----~~~~G~~P~~~v  259 (288)
                      ...+.|+|||  .|...+||+|.+||+|.|++..  +++||.++.    .++.||||+|||
T Consensus        17 ~e~~valydF--~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           17 CELTVVLQDF--SAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             CEEEECSSCB--CCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             ceEEEEEeee--cCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            3478999999  6788889999999999999987  489998876    237899999999

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.91  E-value=2e-09  Score=74.61  Aligned_cols=53  Identities=13%  Similarity=0.327  Sum_probs=46.7

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC--CCeEEEEe---CCCcEEEEeCCCe
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQN---ISGEVGSIPVPYV  163 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~--~~ww~~~~---~~g~~G~vP~~~v  163 (288)
                      ..++++++|.+...+||+|++|++|.|++...  ++||++++   ..++.|+||+|||
T Consensus        18 e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           18 ELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             eEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            34889999999999999999999999999764  79999986   2347899999999

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=98.89  E-value=2.6e-09  Score=92.89  Aligned_cols=59  Identities=34%  Similarity=0.749  Sum_probs=54.5

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM  170 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~  170 (288)
                      ..++|+|+|.+...++|+|++||+|.|++..+++||.|+ .+|+.||||++||+.+....
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~~   61 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-VSGQVGLFPSNYVKLTTDMD   61 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEE-ETTEEEEEEGGGEEEGGGSC
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEE-ECCCCCcCCCccccccCccc
Confidence            568999999999999999999999999999989999998 78999999999999877653

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.89  E-value=1.6e-09  Score=101.71  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=53.9

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ...++|+|+|  .++.++||+|++||+|.|+++.++|||.|+  ++|+.|+||+|||+++....+
T Consensus       442 ~~~~~aly~y--~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~~~~  504 (526)
T 2de0_X          442 AHNQIAIYAH--QPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVK  504 (526)
T ss_dssp             CCEEEECSCB--CCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCCEEC
T ss_pred             ccceEEeecC--CCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEcccCCC
Confidence            4579999999  567788999999999999999999999998  689999999999999865433

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.88  E-value=1.6e-09  Score=102.68  Aligned_cols=58  Identities=16%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~  265 (288)
                      ..++|+|||  .+..++||+|.+||+|.|+++.+++||.++.  +|+.||||++||+.....
T Consensus        86 ~~~~alyd~--~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l  145 (535)
T 2h8h_A           86 TTFVALYDY--ESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI  145 (535)
T ss_dssp             -CEEESSCB--CCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             cEEEEcccc--CCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccccc
Confidence            368999999  6678889999999999999999999999998  799999999999987543

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.88  E-value=1.9e-09  Score=95.17  Aligned_cols=56  Identities=20%  Similarity=0.220  Sum_probs=50.5

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFI  262 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~  262 (288)
                      ...++|+|+|  .+...+||+|.+||+|.|+++.+++||.++. +|+.||||++||+..
T Consensus       147 ~~~~~al~dy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~  203 (308)
T 3qwy_A          147 IEVVVGTFKF--TGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ  203 (308)
T ss_dssp             CEEEEESSCB--CCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC
T ss_pred             ceeEEEeceE--cCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEecccccccc
Confidence            3479999999  5677789999999999999999999999996 899999999999944

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.82  E-value=2.6e-09  Score=99.07  Aligned_cols=56  Identities=16%  Similarity=0.201  Sum_probs=51.4

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  264 (288)
                      .++|+|||  .+..++||+|++||+|.|+++.++|||.++.  +|+.||||++||+....
T Consensus         4 ~~~al~~~--~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~   61 (452)
T 1fmk_A            4 TFVALYDY--ESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (452)
T ss_dssp             EEEESSCB--CCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             EEEECCcc--CCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCccccccccc
Confidence            68999999  6688889999999999999999999999998  79999999999998654

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.29  E-value=5.3e-10  Score=98.44  Aligned_cols=60  Identities=18%  Similarity=0.339  Sum_probs=53.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      .+++|+|+|  .+...+||+|.+||+|.|+++.+++||.++ .+|+.||||++||+.+....+
T Consensus       126 ~~~~alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~~~  186 (303)
T 2lqn_A          126 EYVRTLYDF--PGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSP  186 (303)
Confidence            479999999  567788999999999999999999999998 489999999999999877653

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=98.80  E-value=5.1e-09  Score=85.33  Aligned_cols=59  Identities=17%  Similarity=0.345  Sum_probs=51.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC--CCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~--~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..++|+|++||+|.|++..+ +||.|+..  +|+.|+||++||+.....
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~~   77 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEVT   77 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC-
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEeccc
Confidence            567999999999999999999999999999876 59999852  679999999999987654

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.80  E-value=4.1e-09  Score=75.55  Aligned_cols=57  Identities=16%  Similarity=0.200  Sum_probs=48.6

Q ss_pred             EEeeeccC--CCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         112 KVIAKYDF--DGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       112 ~~~a~~~~--~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      .+.|+++|  ......+|+|++|+++.|++..+++||.|++..|+.|+||.+||+.+..
T Consensus        41 ~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~d~   99 (102)
T 1ri9_A           41 STKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADNDG   99 (102)
T ss_dssp             CCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC---
T ss_pred             EEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhccccc
Confidence            35667777  5678899999999999999999999999999999999999999987654

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.78  E-value=8.1e-09  Score=95.63  Aligned_cols=57  Identities=14%  Similarity=0.156  Sum_probs=51.0

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEe-CCCCeeEEEeC-CeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NINGQWEGELN-GKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~-~~~~w~~~~~~-~~~G~~P~~~v~~~~~  264 (288)
                      .+++|+|||  .+..++||+|++||+|.|+++ .+++||.++.. |+.|+||+|||++...
T Consensus        12 ~~~~aly~~--~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~   70 (450)
T 1k9a_A           12 TECIAKYNF--HGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   70 (450)
T ss_dssp             CEEEESSCB--CCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CEEEECCCc--CccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccc
Confidence            379999999  667788999999999999998 57899999887 9999999999998765

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.78  E-value=5.8e-09  Score=97.85  Aligned_cols=59  Identities=15%  Similarity=0.127  Sum_probs=51.8

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      +.+++|+|||  .+..++||+|++||+|.|+++. +++||.++..++.|+||+|||+.+...
T Consensus        43 ~~~~~alyd~--~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~l  102 (495)
T 1opk_A           43 PNLFVALYDF--VASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSL  102 (495)
T ss_dssp             -CEEEESSCB--CCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSSG
T ss_pred             CcEEEEeCCc--CCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceeccccccccccc
Confidence            3479999999  5677789999999999999987 789999999999999999999987543

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.70  E-value=1.3e-08  Score=94.23  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=50.0

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~~  264 (288)
                      .+++|+|||  .+..++||+|++||+|.|+++ +++||.++  .+|+.|+||++||+.+..
T Consensus         9 ~~~~al~~~--~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~~~   66 (454)
T 1qcf_A            9 IIVVALYDY--EAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   66 (454)
T ss_dssp             CEEEESSCB--CCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             eEEEECccc--CCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccccc
Confidence            379999999  667788999999999999998 58899998  689999999999998754

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.70  E-value=2.3e-08  Score=93.10  Aligned_cols=59  Identities=22%  Similarity=0.450  Sum_probs=54.2

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.+...++|+|++||+|.|+...+++||.|+ .+|+.||||++||+.+...
T Consensus        30 ~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   88 (466)
T 2pz1_A           30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGR-VADGEGWFPASFVRLRVNQ   88 (466)
T ss_dssp             CEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEECSCC
T ss_pred             ccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEE-ECCcEEEEehhHeeeccCc
Confidence            4578999999999999999999999999999899999999 6899999999999986654

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.66  E-value=3.8e-08  Score=92.40  Aligned_cols=60  Identities=23%  Similarity=0.315  Sum_probs=54.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..+||+|++||+|.|++..++|||.|++ .+|+.|+||+|||+++...
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~~  502 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIET  502 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCCE
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEcccC
Confidence            45689999999999999999999999999998999999997 6799999999999986543

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.65  E-value=8.9e-09  Score=73.79  Aligned_cols=58  Identities=14%  Similarity=0.130  Sum_probs=45.7

Q ss_pred             EEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCCC
Q psy5076         208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       208 ~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~  265 (288)
                      ++|+++|.-......+|.|.+||++.|+...+++||.++. .|+.|+||.+||+.++++
T Consensus        42 ~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~d~~  100 (102)
T 1ri9_A           42 TKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADNDGE  100 (102)
T ss_dssp             CBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC----
T ss_pred             EEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhcccccc
Confidence            5666666334455679999999999999999999999987 689999999999877653

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.64  E-value=1.1e-07  Score=66.59  Aligned_cols=65  Identities=14%  Similarity=0.176  Sum_probs=48.6

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC----CCeeEEEeCCeeeEecCCcEEEcCCCCCccCCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI----NGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG  273 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~----~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~~~~~  273 (288)
                      ++.+..++  .+...-||+|.+||+|-|+++.|    ..||.+..+|..||||++||+++......++++.
T Consensus        19 LY~~t~~~--~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~~~~~d~~~   87 (92)
T 1ug1_A           19 LFQAERNF--NAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRSHSDASS   87 (92)
T ss_dssp             EEEESSCC--CCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCSSCCCCCC
T ss_pred             eEEeccCc--CCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccCCCcccccc
Confidence            45555555  34556699999999999999874    3444455589999999999999988776555543

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.64  E-value=3.4e-09  Score=99.20  Aligned_cols=55  Identities=24%  Similarity=0.356  Sum_probs=0.0

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEEeC-CeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELN-GKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~~~-~~~G~~P~~~v~~~  262 (288)
                      ..++|+|||  .+..++||+|.+||+|.|+.+.+ +|||.|++. |+.||||++||+.+
T Consensus       429 ~~~~alydy--~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          429 VRVRALYDY--EGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             -----------------------------------------------------------
T ss_pred             eEEEEcccc--CCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            368999999  56777899999999999998874 599999998 99999999999876

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.54  E-value=1.6e-08  Score=88.49  Aligned_cols=55  Identities=16%  Similarity=0.196  Sum_probs=46.7

Q ss_pred             eEEEEEEcccCCCCCCC-----eeeecCCCEEEEEEeCCCCeeEEEeCC------eeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKT-----ALKLEIGDIIKVTKTNINGQWEGELNG------KTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~-----eLs~~~g~~v~v~~~~~~~w~~~~~~~------~~G~~P~~~v~~~  262 (288)
                      .+++|+|||.  +..++     +|+|.+||++.|+++.+++||.++..+      +.|+||++|+++.
T Consensus         2 ~~vrAlydy~--~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~   67 (295)
T 1kjw_A            2 FYIRALFDYD--KTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (295)
T ss_dssp             EEEEESSCBC--HHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEEeeccC--CCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHH
Confidence            4789999995  44444     999999999999999999999998753      7899999998654

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.44  E-value=9e-08  Score=67.99  Aligned_cols=58  Identities=19%  Similarity=0.295  Sum_probs=49.4

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC--CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~--~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+++ ...+..+|+|++|+++.|+...+  ++||.+++..|+.|+||.+||+.-...
T Consensus        29 ~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~vd~~~   88 (96)
T 2gtj_A           29 HLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEIDYDS   88 (96)
T ss_dssp             EEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEECSSC
T ss_pred             EEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEEEhHH
Confidence            45677777 56689999999999999999876  579999999999999999999764443

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=98.44  E-value=2.7e-07  Score=61.11  Aligned_cols=40  Identities=33%  Similarity=0.789  Sum_probs=37.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEE
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ  149 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~  149 (288)
                      ...++|+|+|.++..+||+|++||+|.|+++.+++||.|+
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~   60 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE   60 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEE
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEE
Confidence            4568999999999999999999999999999889999987

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.41  E-value=2.1e-07  Score=89.80  Aligned_cols=79  Identities=22%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             CChhhhhhhheecccCCCcccccccceeeEEeeeccCC---CCCCCCCCCCCCCEEEEEEe-----cCCCeEEEEe-CCC
Q psy5076          83 SDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD---GNDPDDLPFKKNDILIVVSK-----DEEHWWTAQN-ISG  153 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l~~~~l~~p~~~~~~~~~a~~~~~---~~~~~eLs~~~g~~i~vl~~-----~~~~ww~~~~-~~g  153 (288)
                      ..|.+||..|...          +.++...++|++||.   +.++.+|+|++||+|.++..     .+++||.|++ .+|
T Consensus       556 ~~I~~LI~~yi~~----------Lk~rs~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g  625 (655)
T 3pvl_A          556 EDIRDLVVTFLEG----------LRKRSKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTK  625 (655)
T ss_dssp             HHHHHHHHHHHHH----------HHHHCCEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTC
T ss_pred             HHHHHHHHHHHHH----------HhhcchhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCC
Confidence            4455556655441          233467899999999   67889999999999999887     3589999997 689


Q ss_pred             cEEEEeCCCeEecccCCc
Q psy5076         154 EVGSIPVPYVQKYSEGMS  171 (288)
Q Consensus       154 ~~G~vP~~~v~~~~~~~~  171 (288)
                      +.|+||++||..+.....
T Consensus       626 ~~G~fP~~~V~~lptl~~  643 (655)
T 3pvl_A          626 QRGDFPTDCVYVMPTVTL  643 (655)
T ss_dssp             CEEEEEGGGEEECCCSSC
T ss_pred             ceEEeEhhhEEECCCCCC
Confidence            999999999999886543

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.38  E-value=5.5e-08  Score=85.10  Aligned_cols=55  Identities=27%  Similarity=0.593  Sum_probs=48.0

Q ss_pred             EEeeeccCCCCCCC-----CCCCCCCCEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCeEec
Q psy5076         112 KVIAKYDFDGNDPD-----DLPFKKNDILIVVSKDEEHWWTAQNIS-----GEVGSIPVPYVQKY  166 (288)
Q Consensus       112 ~~~a~~~~~~~~~~-----eLs~~~g~~i~vl~~~~~~ww~~~~~~-----g~~G~vP~~~v~~~  166 (288)
                      .++|+|+|.++..+     +|+|++||++.|+++.+++||.++..+     ++.|+||++|+.+.
T Consensus         3 ~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~   67 (295)
T 1kjw_A            3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (295)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHH
Confidence            57899999988776     999999999999999889999998643     37899999999654

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.37  E-value=1.3e-07  Score=91.30  Aligned_cols=62  Identities=21%  Similarity=0.249  Sum_probs=50.3

Q ss_pred             CeEEEEEEcccCC-CCCCCeeeecCCCEEEEEEe-----CCCCeeEEE--eCCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPN-AYDKTALKLEIGDIIKVTKT-----NINGQWEGE--LNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~-~~~~~eLs~~~g~~v~v~~~-----~~~~w~~~~--~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..|++|++||.-. ..++.+|+|++||+|.+...     .++|||.|+  ++|+.|+||++||+.+..-.
T Consensus       573 s~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl~  642 (655)
T 3pvl_A          573 SKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTVT  642 (655)
T ss_dssp             CCEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCSS
T ss_pred             chhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCCC
Confidence            4699999999411 46677999999999999888     478999999  57999999999999986543

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.35  E-value=5.3e-08  Score=91.08  Aligned_cols=56  Identities=34%  Similarity=0.652  Sum_probs=0.0

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+|+|.+...++|+|++||+|.|+... +++||.|+...|+.||||++||+.+
T Consensus       429 ~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          429 VRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ---------------------------------------------------------
T ss_pred             eEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            4689999999999999999999999999876 4589999954499999999999875

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*

Probab=98.34  E-value=6e-07  Score=81.84  Aligned_cols=70  Identities=21%  Similarity=0.402  Sum_probs=56.9

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeC---CeEEEEEEEeecCCCcceEEeeCCcccCChhhh
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN---NKVSHYIINKITNTEQQTCYKIGDKTFSDLPSL   88 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~---~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~L   88 (288)
                      .|+||.|+|++|+++|..+.+ |+||||-|++..|.|+++.+..   +.++||.|.....    +      -.-.++.|.
T Consensus       352 g~I~GFIsk~ea~~lL~~~~~-GTFLLRFSeS~~GgitIsyV~~d~~~~~kh~~v~p~t~----~------ls~~SL~D~  420 (473)
T 1uur_A          352 GIIYGYMGRQEVNDALQNQDP-GTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDT----A------AAKKTFPDF  420 (473)
T ss_dssp             TSSCBSCCHHHHHHTTSSCCT-TCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGS----B------TTTBCHHHH
T ss_pred             CcEEEEecHHHHHHHhhCCCC-CeEEEEeccCCCceEEEEEEeecCCCceeEEEecCCcc----c------cccCCHHHH
Confidence            799999999999999998877 9999999999999999999973   6899998864221    1      133667777


Q ss_pred             hhhh
Q psy5076          89 LAFY   92 (288)
Q Consensus        89 V~~y   92 (288)
                      |..|
T Consensus       421 I~d~  424 (473)
T 1uur_A          421 LSEH  424 (473)
T ss_dssp             HTTC
T ss_pred             Hhcc
Confidence            7765

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.32  E-value=1.6e-06  Score=60.70  Aligned_cols=57  Identities=16%  Similarity=0.334  Sum_probs=47.4

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecC----CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~----~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      .+.+..++.+...-||.+++||+|.|+++.+    ..||.+. .+|+.||||++|++.+...
T Consensus        19 LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vd-tgg~~GyvPs~yLe~~~~~   79 (92)
T 1ug1_A           19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLID-NGVTKGFVYSSFLKPYNPR   79 (92)
T ss_dssp             EEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEE-CSSSEEEEEGGGEEECCCC
T ss_pred             eEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEE-CCCcEEeeEhhhceEcccC
Confidence            5666677778888999999999999999865    3456676 5899999999999998865

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=98.26  E-value=1.5e-06  Score=69.89  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=62.1

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCC--eEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhh
Q psy5076          10 RNSWYFGMMTRQEAQAILLSEKDNG--AFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPS   87 (288)
Q Consensus        10 ~~~Wy~g~isr~~ae~lL~~~~~~G--~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~   87 (288)
                      ..+||++  +++++|++|.+.++ +  .|.++.+...+|.|+|++. .+.++|-.|... .+     |.+.+..|+||.+
T Consensus       100 ~h~kf~~--s~~~~e~~L~~~~p-~~~~Y~f~~s~~~PG~f~l~~~-~~~~~~e~i~V~-~g-----~~~~~~~f~sl~~  169 (178)
T 2xp1_A          100 AHAKYFN--SPEDAEKLLSSFDG-SKVVYAFYFSRKYPGKLTFAYN-NGSILEEYIGVS-DM-----LTYNNSTFKDIDS  169 (178)
T ss_dssp             HSTTBCS--CTTTSHHHHHTCCS-SSCEEEEEECSSSTTEEEEEEE-SSSEEEEEEEES-SS-----EEETTEEESSHHH
T ss_pred             hCCccCC--CHHHHHHHHHHhCC-CCceEEEEecCCCCCeEEEEEc-CCCCceeeEEEc-cC-----CEEcCcCCcCHHH
Confidence            3589998  89999999976533 3  3999999999999999997 777887777665 45     7778899999999


Q ss_pred             hhhhhee
Q psy5076          88 LLAFYKV   94 (288)
Q Consensus        88 LV~~y~~   94 (288)
                      ||+||++
T Consensus       170 L~~~fK~  176 (178)
T 2xp1_A          170 FVAYRKR  176 (178)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9999976

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.23  E-value=1.1e-06  Score=74.03  Aligned_cols=59  Identities=17%  Similarity=0.248  Sum_probs=49.0

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCC---eeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNING---QWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~---w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ...++++|  .+..+.+|.+..|++|.++.+.+++   ||.+.++++.|+||.+||+.+....+
T Consensus       172 ~~~al~d~--~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~~~~  233 (239)
T 1ycs_B          172 VIYALWDY--EPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKP  233 (239)
T ss_dssp             EEEESSCB--CCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC----
T ss_pred             eEEEEecc--CCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCcCCc
Confidence            57889999  5677779999999999999887765   99999999999999999998855443

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.21  E-value=8.9e-07  Score=77.90  Aligned_cols=54  Identities=22%  Similarity=0.293  Sum_probs=44.5

Q ss_pred             CeEEEEEEcccCCCCCC-----CeeeecCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCc
Q psy5076         205 PAFARVKQVRVPNAYDK-----TALKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTH  258 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~-----~eLs~~~g~~v~v~~~~~~~w~~~~~---~~~~G~~P~~~  258 (288)
                      ..+++|+|||++...+.     .+|+|.+||++.|+.+.+++||.++.   +|..|+||++.
T Consensus        38 ~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           38 AFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             cEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            45899999997543221     15999999999999999999999987   46799999986

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.21  E-value=8.8e-07  Score=62.90  Aligned_cols=53  Identities=25%  Similarity=0.350  Sum_probs=44.4

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC--CCeeEEEe-CCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI--NGQWEGEL-NGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~--~~w~~~~~-~~~~G~~P~~~v~~~  262 (288)
                      .++|+++.   .....+|.|.+|+++.|+...+  .|||.++. .|..|+||.+||+.-
T Consensus        30 ~a~a~~~~---k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~vd   85 (96)
T 2gtj_A           30 LAKACCDV---KGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEID   85 (96)
T ss_dssp             EEEESSCE---ECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEEC
T ss_pred             EEEEeecC---CCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEEE
Confidence            57777763   4567799999999999999876  68999887 689999999999764

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.08  E-value=3.5e-06  Score=74.09  Aligned_cols=53  Identities=28%  Similarity=0.565  Sum_probs=46.3

Q ss_pred             eeEEeeeccCCCCCCCC-------CCCCCCCEEEEEEecCCCeEEEEeC--CCcEEEEeCCC
Q psy5076         110 IEKVIAKYDFDGNDPDD-------LPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPY  162 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~e-------Ls~~~g~~i~vl~~~~~~ww~~~~~--~g~~G~vP~~~  162 (288)
                      ...++|+|+|.+...++       |+|++||++.|++..+++||.++..  ++..|+||+++
T Consensus        38 ~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           38 AFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             cEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            45789999999987654       9999999999999999999999963  46899999976

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.90  E-value=6.7e-06  Score=74.63  Aligned_cols=55  Identities=16%  Similarity=0.206  Sum_probs=45.5

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEe---CCCCeeEEEeC-C-----eeeEecCCcEEE
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKT---NINGQWEGELN-G-----KTGHFPFTHVEF  261 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~---~~~~w~~~~~~-~-----~~G~~P~~~v~~  261 (288)
                      ..+++|+|||.+  .++.+|+|.+||++.|+..   .+.+||.++.- .     ..|++|++|+.+
T Consensus       106 ~~~vral~dy~~--~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          106 SFYIRTHFEYEK--ESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             CEEEEECSCBCC--SSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             ccccccccccCC--CCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            468999999954  6677999999999999998   57889987652 2     489999999854

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.90  E-value=7.1e-06  Score=71.67  Aligned_cols=55  Identities=18%  Similarity=0.201  Sum_probs=42.1

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCC---------eeEEEeC------CeeeEecCCcEEE
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNING---------QWEGELN------GKTGHFPFTHVEF  261 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~---------w~~~~~~------~~~G~~P~~~v~~  261 (288)
                      ..|++|+|+|.  +..+.+|+|.+||++.|+...++|         ||.+..-      ...|++|++|+.+
T Consensus         4 sfyVRalfdy~--~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            4 SFYIRTHFELE--PSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             CEEEEECSCBC--CCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             cEEEEEecCcC--CCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            35899999994  567789999999999999987665         9977552      2689999998743

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=97.89  E-value=1.4e-05  Score=66.99  Aligned_cols=57  Identities=25%  Similarity=0.693  Sum_probs=50.0

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCC---eEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---WWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~---ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ....++++|.+....++.++.|+++.++.+.+.+   ||.+. .+++.|+||.+||+.+..
T Consensus       171 ~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~-~~~~~G~~P~~yv~~~~~  230 (239)
T 1ycs_B          171 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR-LNDKEGYVPRNLLGLYPR  230 (239)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEE-ETTEEEEEEGGGEECCC-
T ss_pred             ceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEE-ECCcEEEeehHHeeECCc
Confidence            3567889999999999999999999999887655   99998 789999999999998754

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.84  E-value=1.1e-05  Score=78.94  Aligned_cols=56  Identities=14%  Similarity=0.179  Sum_probs=46.0

Q ss_pred             CeEEEEEEcccCCCCCCCe-----eeecCCCEEEEEEeCCCCeeEEEeC------CeeeEecCCcEEEc
Q psy5076         205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELN------GKTGHFPFTHVEFI  262 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~e-----Ls~~~g~~v~v~~~~~~~w~~~~~~------~~~G~~P~~~v~~~  262 (288)
                      ..|++|+|+|++  ...++     |+|++||++.|+.+.+++||.++..      +..|+||++|+.+-
T Consensus       427 ~~~vrAl~dy~~--~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~  493 (721)
T 2xkx_A          427 GFYIRALFDYDK--TKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER  493 (721)
T ss_pred             ceeEEEeeccCc--CCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHH
Confidence            458899999965  44446     9999999999999999999988764      34699999998543

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.81  E-value=1.2e-05  Score=73.04  Aligned_cols=56  Identities=23%  Similarity=0.401  Sum_probs=48.0

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEe---cCCCeEEEEeCCC-----cEEEEeCCCeEe
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISG-----EVGSIPVPYVQK  165 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~---~~~~ww~~~~~~g-----~~G~vP~~~v~~  165 (288)
                      .-.++|+|+|.+.+..+|+|++||++.|++.   .+.+||.++..+.     +.|+||++|+.+
T Consensus       106 ~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          106 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             ccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            4467799999999999999999999999998   5788999986433     489999999865

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.74  E-value=2.3e-05  Score=72.40  Aligned_cols=55  Identities=18%  Similarity=0.244  Sum_probs=45.1

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEe---CCCCeeEEEe---CC---eeeEecCCcEEE
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKT---NINGQWEGEL---NG---KTGHFPFTHVEF  261 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~---~~~~w~~~~~---~~---~~G~~P~~~v~~  261 (288)
                      ..+++++|+|.+  ..+.+|+|.+||++.|+..   .+.+||.++.   ++   ..|+||++|+.+
T Consensus        98 s~yVralfdy~~--~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           98 SFYIRTHFEYEK--ESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             CEEEEECSCBCC--SSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             ccccccccCcCC--CCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            458999999954  5567999999999999998   5778997755   23   689999999854

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.71  E-value=2.8e-05  Score=67.92  Aligned_cols=55  Identities=20%  Similarity=0.387  Sum_probs=44.0

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCC---------eEEEEeCC-----CcEEEEeCCCeEe
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---------WWTAQNIS-----GEVGSIPVPYVQK  165 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~---------ww~~~~~~-----g~~G~vP~~~v~~  165 (288)
                      -.++|+|+|.++.+.+|+|++||++.|++..+++         ||.+...+     +..|+||.+|+.+
T Consensus         5 fyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            5 FYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             EEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             EEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            3567999999999999999999999999977555         99998642     2689999988754

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.71  E-value=5.2e-05  Score=65.69  Aligned_cols=57  Identities=16%  Similarity=0.239  Sum_probs=47.6

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++++|||.+.   ++++.+|+.+.+++..+..||.++..+|..|+||++|+....++
T Consensus       198 ~~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~p~  254 (283)
T 3pe0_A          198 RLPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPPPN  254 (283)
T ss_dssp             CEEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCSCC
T ss_pred             CceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCCCC
Confidence            4678999999774   79999999999999888899999988899999999999876654

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.70  E-value=2.4e-05  Score=68.05  Aligned_cols=54  Identities=24%  Similarity=0.383  Sum_probs=38.3

Q ss_pred             CeEEEEEEcccCCCCCC---CeeeecCCCEEEEEEeCCCCeeEEEe------CCeeeEecCCc
Q psy5076         205 PAFARVKQVRVPNAYDK---TALKLEIGDIIKVTKTNINGQWEGEL------NGKTGHFPFTH  258 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~---~eLs~~~g~~v~v~~~~~~~w~~~~~------~~~~G~~P~~~  258 (288)
                      ..|++|+|||+|.....   .+|+|.+||++.|+.+.+++||.++.      ....|++|+..
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~   67 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKR   67 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHH
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChH
Confidence            56999999998643220   16999999999999999999998764      12479999853

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.65  E-value=4.5e-05  Score=70.48  Aligned_cols=55  Identities=24%  Similarity=0.417  Sum_probs=47.4

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEe---cCCCeEEEEeCC--C---cEEEEeCCCeEe
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNIS--G---EVGSIPVPYVQK  165 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~---~~~~ww~~~~~~--g---~~G~vP~~~v~~  165 (288)
                      ..++++|+|.+..+.+|+|++||++.|++.   .+.+||.++..+  +   +.|+||++|+.+
T Consensus        99 ~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           99 FYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             cccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            467899999999999999999999999998   567899998632  3   689999999865

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.63  E-value=3.4e-05  Score=75.45  Aligned_cols=57  Identities=26%  Similarity=0.525  Sum_probs=48.4

Q ss_pred             eeEEeeeccCCCCCCCC-----CCCCCCCEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDD-----LPFKKNDILIVVSKDEEHWWTAQNIS-----GEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~e-----Ls~~~g~~i~vl~~~~~~ww~~~~~~-----g~~G~vP~~~v~~~  166 (288)
                      ...++|+|+|.+...++     |+|++||++.|++..+.+||.++...     +..|+||++|+.+.
T Consensus       427 ~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~  493 (721)
T 2xkx_A          427 GFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER  493 (721)
T ss_pred             ceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHH
Confidence            34678999999998888     99999999999999889999998642     35699999998653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=97.57  E-value=5.4e-05  Score=62.42  Aligned_cols=56  Identities=27%  Similarity=0.326  Sum_probs=49.6

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      ..+++++|+|  .+....+|.|++|+++.+....+.+||.+...+..|++|.+|+...
T Consensus        14 ~~~~~al~d~--~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           14 VKVFRALYTF--EPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CEEEEESSCC--CCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHH
T ss_pred             ceEEEEeCCc--CCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcccc
Confidence            3478999999  4567779999999999999999999999999999999999988544

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.56  E-value=7.3e-05  Score=64.99  Aligned_cols=54  Identities=35%  Similarity=0.704  Sum_probs=39.0

Q ss_pred             eeEEeeeccCCCCCCC-----CCCCCCCCEEEEEEecCCCeEEEEeC-----CCcEEEEeCCCe
Q psy5076         110 IEKVIAKYDFDGNDPD-----DLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPYV  163 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~-----eLs~~~g~~i~vl~~~~~~ww~~~~~-----~g~~G~vP~~~v  163 (288)
                      .-.++|+|+|.+..++     .|+|++||++.|++..+++||.++..     ..+.|++|+...
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~   68 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRR   68 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHHH
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChHH
Confidence            4568899999987654     59999999999999999999999853     234799998533

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.54  E-value=0.00015  Score=62.81  Aligned_cols=57  Identities=12%  Similarity=0.098  Sum_probs=46.4

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~~  266 (288)
                      +..++|+|||.+     .++++.+|+.+.++...+..||.++. +|..|+||++|+.+..+..
T Consensus       198 ~~~v~al~dy~~-----~e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~p~~  255 (283)
T 3pe0_A          198 RLPLLAVCDYKQ-----VEVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPPPNQ  255 (283)
T ss_dssp             CEEEEECSCEEC-----SSCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCSCCH
T ss_pred             CceEEeecCccC-----CcccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCCCCH
Confidence            678999999943     37999999999999998889998876 4779999999997776554

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}

Probab=97.45  E-value=0.00014  Score=69.46  Aligned_cols=73  Identities=21%  Similarity=0.392  Sum_probs=54.3

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCC-CCCceEEEEeeC---C-eEEEEEEEeecCCCcceEEeeCCcccCChh
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT-ILGNYVLCVKEN---N-KVSHYIINKITNTEQQTCYKIGDKTFSDLP   86 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~-~~~~~~lsv~~~---~-~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~   86 (288)
                      .|.+|.|+|++|+.+|+.+.+ |+||+|-|++ ..|.++++....   + .+.++.|.-         |...+-.=.+++
T Consensus       576 G~I~GFIsK~~a~~lL~~~~~-GTFLLRFSdS~~~Ggitia~V~~~~~~~~~~v~~v~P---------~t~kdl~~~sl~  645 (683)
T 1yvl_A          576 GCIMGFISKERERALLKDQQP-GTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEP---------YTKKELSAVTFP  645 (683)
T ss_dssp             TCCCBCCCHHHHHHHHSSSCS-SCEEEEECSSCSSCEEEEEEEECCC---CCEEEEBCC---------EEHHHHTTSCHH
T ss_pred             CceEEeecHHHHHHHHhCCCC-CeEEEecCCCCCCCceEEEEEeccCCCccceEEecCC---------CchHhhhhCCHH
Confidence            567889999999999998777 9999999998 999999998863   2 443443321         333222446788


Q ss_pred             hhhhhhee
Q psy5076          87 SLLAFYKV   94 (288)
Q Consensus        87 ~LV~~y~~   94 (288)
                      |.|..|..
T Consensus       646 d~i~d~~~  653 (683)
T 1yvl_A          646 DIIRNYKV  653 (683)
T ss_dssp             HHHHHCCE
T ss_pred             HHhhchhh
Confidence            99998864

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}

Probab=97.41  E-value=0.00013  Score=68.70  Aligned_cols=71  Identities=21%  Similarity=0.383  Sum_probs=52.5

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCe-EEEEEEEeecCCCcceEEeeCCcccCChhhhhh
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK-VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLA   90 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~-v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~LV~   90 (288)
                      .|.||.|+|++|+.+|..+.+ |+||||-|++..|.|+++....+. .+++.|.-         |...+-.-.+++|+|.
T Consensus       465 G~I~Gfisk~~a~~~L~~~~~-GtFLlRFSds~~G~~tisyv~~~~~~~v~~v~P---------~t~kdl~~~sL~d~I~  534 (585)
T 1y1u_A          465 GAILGFVNKQQAHDLLINKPD-GTFLLRFSDSEIGGITIAWKFDSPDRNLWNLKP---------FTTRDFSIRSLADRLG  534 (585)
T ss_dssp             TCCCBSCCHHHHHHHHHTSCT-TCEEEEEETTSTTEEEEEECCSSCCSSCSEEEE---------ECHHHHHHSCHHHHHH
T ss_pred             cceEEeccHHHHHHHHhCCCC-CceEEEeccCCcCcEEEEEEecCCCceeEeecC---------CchhhcccCCHHHHHh
Confidence            467899999999999998777 999999999999999999987432 22232321         2222224577889888


Q ss_pred             hh
Q psy5076          91 FY   92 (288)
Q Consensus        91 ~y   92 (288)
                      .|
T Consensus       535 d~  536 (585)
T 1y1u_A          535 DL  536 (585)
T ss_dssp             HC
T ss_pred             cc
Confidence            76

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A

Probab=97.34  E-value=1.7e-05  Score=74.48  Aligned_cols=73  Identities=19%  Similarity=0.347  Sum_probs=53.9

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCC-CCCceEEEEeeC---CeEEEEEEEeecCCCcceEEeeCCcccCChhh
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT-ILGNYVLCVKEN---NKVSHYIINKITNTEQQTCYKIGDKTFSDLPS   87 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~-~~~~~~lsv~~~---~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~   87 (288)
                      .|.+|.|+|++|+.+|+.+.+ |+||+|.|++ ..|.++++....   +.+.|+.|.-         |...+-.-.++.|
T Consensus       457 G~I~Gfisk~~a~~lL~~~~~-GTFLlRFSes~~~Ggitis~v~~~~~g~~~~~~v~P---------~t~~~l~~~sLad  526 (596)
T 1bg1_A          457 GYIMGFISKERERAILSTKPP-GTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEP---------YTKQQLNNMSFAE  526 (596)
T ss_dssp             SCCCBCCCTTGGGTTTTTSCT-TCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCCC---------BCGGGGTSSCHHH
T ss_pred             CCeEEEecHHHHHHHHhCCCC-CeeEEeecCCCCCCcEEEEEEecCCCCceeEEecCC---------CchhhhccCCHHH
Confidence            567889999999999998877 9999999998 889999998763   3344544432         2222224458899


Q ss_pred             hhhhhee
Q psy5076          88 LLAFYKV   94 (288)
Q Consensus        88 LV~~y~~   94 (288)
                      +|..|..
T Consensus       527 ~I~d~~~  533 (596)
T 1bg1_A          527 IIMGYKI  533 (596)
T ss_dssp             HTTSCCC
T ss_pred             HHHhhhh
Confidence            9977753

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=97.25  E-value=0.00029  Score=57.96  Aligned_cols=56  Identities=29%  Similarity=0.672  Sum_probs=50.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ...++++++|.++...++.|+.|+++.+....+.+||.+. ..++.|++|.+|+...
T Consensus        14 ~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~-~~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEE-ETTEEEEEEHHHHHHH
T ss_pred             ceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcc-cCCcceeechhhcccc
Confidence            5578999999999999999999999999999889999998 7899999999888654

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1

Probab=96.84  E-value=0.0008  Score=62.89  Aligned_cols=73  Identities=21%  Similarity=0.392  Sum_probs=52.2

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCC-CCCceEEEEeeC---C-eEEEEEEEeecCCCcceEEeeCCcccCChh
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT-ILGNYVLCVKEN---N-KVSHYIINKITNTEQQTCYKIGDKTFSDLP   86 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~-~~~~~~lsv~~~---~-~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~   86 (288)
                      .|.+|.|+|++|+.+|+.+.+ |+||+|-|++ ..|.++++....   + .+.++.|.-         |...+-.=.+++
T Consensus       441 G~I~GFIsK~~a~~lL~~~~~-GTFLLRFSdS~~~GgITia~V~~~~~~~~~~v~~v~P---------~T~kdl~~~sL~  510 (575)
T 1bf5_A          441 GCIMGFISKERERALLKDQQP-GTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEP---------YTKKELSAVTFP  510 (575)
T ss_dssp             TCCCCCCCHHHHHHHTTTCCS-CCCCEEECSSCSSCCEEEEECCCCSSSSCCCCEECCC---------BCHHHHHSSCHH
T ss_pred             CceEEeecHHHHHHHHhCCCC-CeEEEecCCCCCCCcEEEEEEecCCCCccceeEecCC---------CchhhhhhCCHH
Confidence            566788899999999998877 9999999998 899999888763   2 333333321         221112335788


Q ss_pred             hhhhhhee
Q psy5076          87 SLLAFYKV   94 (288)
Q Consensus        87 ~LV~~y~~   94 (288)
                      |.|..|..
T Consensus       511 d~i~d~~~  518 (575)
T 1bf5_A          511 DIIRNYKV  518 (575)
T ss_dssp             HHHHTCCC
T ss_pred             HHhhcchh
Confidence            98888864

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=96.73  E-value=0.0014  Score=60.37  Aligned_cols=57  Identities=18%  Similarity=0.121  Sum_probs=50.1

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...+.++++|..   .++++.+|+.+++++..+..||.+...+|..|+||+.|+....+.
T Consensus       283 ~~~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ipppd  339 (450)
T 3r6n_A          283 PIILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPN  339 (450)
T ss_dssp             CCEEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECCSCC
T ss_pred             CceEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecCCCC
Confidence            456889999994   788999999999999988999999977889999999999776654

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=96.72  E-value=0.0018  Score=59.49  Aligned_cols=57  Identities=18%  Similarity=0.140  Sum_probs=49.1

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC-CeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~-~~~G~~P~~~v~~~~~~~  266 (288)
                      ++.+++|+||.     ..++++.+||++.++...+..||.+... |..|+||+.|+.+..++.
T Consensus       283 ~~~V~alcdy~-----~~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ipppd~  340 (450)
T 3r6n_A          283 PIILRALCDYK-----QDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPNP  340 (450)
T ss_dssp             CCEEEESSCEE-----ETTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECCSCCH
T ss_pred             CceEEEecccc-----CCeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecCCCCH
Confidence            67899999994     3589999999999999999999998775 689999999997765443

>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*

Probab=96.71  E-value=0.0033  Score=54.00  Aligned_cols=48  Identities=25%  Similarity=0.392  Sum_probs=41.7

Q ss_pred             CccccCCCHHHHHHHHcC--CCCCCeEEEEeCCCCCCceEEEEeeC-CeEEE
Q psy5076          12 SWYFGMMTRQEAQAILLS--EKDNGAFLVRDSNTILGNYVLCVKEN-NKVSH   60 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~--~~~~G~FLvR~s~~~~~~~~lsv~~~-~~v~h   60 (288)
                      +=|.+.||=+||.+.|..  +.+ |+|++|-|.+..|+|+++.... +.|.|
T Consensus       244 pGy~aFlTydEv~~~L~~~~~kp-GsYIfR~ScTrlGqwAIgyV~~~~~I~q  294 (329)
T 3bux_B          244 PGYMAFLTYDEVKARLQKFIHKP-GSYIFRLSCTRLGQWAIGYVTADGNILQ  294 (329)
T ss_dssp             TTBCTTCCHHHHHHHHGGGTTST-TEEEEEECSSSTTSEEEEEECTTSCEEE
T ss_pred             cchhheeeHHHHHHHHHHhcCCC-CcEEEEeccCccCceEEEEECCCCceee
Confidence            558999999999999987  667 9999999999999999999874 45544

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=96.43  E-value=0.026  Score=49.14  Aligned_cols=112  Identities=8%  Similarity=0.003  Sum_probs=70.0

Q ss_pred             CCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccccccCCCCCCCCCCCCCCCccccccccCCCCCe
Q psy5076         127 LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPA  206 (288)
Q Consensus       127 Ls~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (288)
                      -.+..|+.|.|+++ + +|+..+..+|..|||+..++............ .                  .......  . 
T Consensus        35 ~~l~~G~~v~Vl~~-~-gW~~V~~~dG~~GwV~~~~l~~~~~~~~~~~~-~------------------~~~~vvt--~-   90 (306)
T 3npf_A           35 TQALLGMPVKVLQY-N-GWYEIQTPDDYTGWVHRMVITPMSKERYDEWN-R------------------AEKIVVT--S-   90 (306)
T ss_dssp             EEEETTCEEEEEEE-S-SEEEEECTTSCEEEEEGGGEEEECHHHHHHHH-H------------------SCEEEEC--S-
T ss_pred             EEEcCCCEEEEEEE-C-CEEEEEcCCCCEEEEEhHHeeecChhhhhhhc-c------------------CCcEEEe--e-
Confidence            34678999999997 3 59998855899999999999875532110000 0                  0000000  0 


Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~  264 (288)
                      ....++. .|......-..+..|..+.+++. .++|+.... +|+.||++..++..+..
T Consensus        91 ~~~~vr~-~p~~~~~~~~~l~~Gt~v~v~~~-~~~W~kV~~pdG~~GyV~~~~l~~~~~  147 (306)
T 3npf_A           91 HYGFAYE-KPDESSQPVSDVVAGNRLKWEGS-KGHFYQVSYPDGRKAYLSKSISQPEAG  147 (306)
T ss_dssp             SEEEEES-SSSTTSCEEEEEETTCEEEEEEE-ETTEEEEECTTSCEEEEETTSEEEHHH
T ss_pred             cceeEEe-CCCCCCceEEEEcCCCEEEEEee-cCCEEEEEcCCCCeEEEEeeccceeec
Confidence            0111221 11112222467889999999875 677988877 78899999999987743

>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}

Probab=96.29  E-value=0.0068  Score=51.74  Aligned_cols=49  Identities=24%  Similarity=0.434  Sum_probs=42.0

Q ss_pred             CCccccCCCHHHHHHHHc--CCCCCCeEEEEeCCCCCCceEEEEee-CCeEEE
Q psy5076          11 NSWYFGMMTRQEAQAILL--SEKDNGAFLVRDSNTILGNYVLCVKE-NNKVSH   60 (288)
Q Consensus        11 ~~Wy~g~isr~~ae~lL~--~~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v~h   60 (288)
                      .+=|.|.||=+||...|.  .+.+ |+||+|-|.+..|+|+|+... ++.|.|
T Consensus       228 hpGy~aFlTydEV~~~L~~~~~Kp-GsYIfR~ScTrlGqwAIgYV~s~g~I~q  279 (323)
T 3op0_A          228 HPGYMAFLTYDEVQERLQACRDKP-GSYIFRPSCTRLGQWAIGYVSSDGSILQ  279 (323)
T ss_dssp             CTTBCTTCCHHHHHHHTTGGGGST-TEEEEEECSSSTTCEEEEEECTTSCEEE
T ss_pred             CcceeeeeeHHHHHHHHHHhccCC-CcEEEEeccCccCceEEEEEcCCCceee
Confidence            377999999999999998  4566 999999999999999999987 445544

>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.0007  Score=69.05  Aligned_cols=81  Identities=20%  Similarity=0.368  Sum_probs=0.0

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee-CCeEEEEEEEeecCCC---cceEEeeCCcccCChhh
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIINKITNTE---QQTCYKIGDKTFSDLPS   87 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v~h~~I~~~~~~~---~~~~~~~~~~~F~sl~~   87 (288)
                      |-|| +++-.+|++.|..... |.++||+|+......+++++. ++-+.|+-|...+..+   .++.+.|++..|.+|.|
T Consensus      1025 P~F~-n~~~~qAe~~L~~~~~-Gd~vIRPSSkG~dhLtvTwKv~d~vyqHidV~E~~K~n~~slG~~L~I~~~~y~DLDE 1102 (1219)
T 3psi_A         1025 PYYF-PFNGRQAEDYLRSKER-GEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLALGKVLIVDNQKYNDLDQ 1102 (1219)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCC-CCCHHHHHHHHhcCCC-CCEEEeecCCCCCceEEEEEEcCCcEEEEEEEecCCccccccCceEEECCceECCHHH
Confidence            6777 8999999999988777 999999999877778999996 5667888887543211   11237777789999999


Q ss_pred             hhhhhee
Q psy5076          88 LLAFYKV   94 (288)
Q Consensus        88 LV~~y~~   94 (288)
                      ||..|-.
T Consensus      1103 li~r~V~ 1109 (1219)
T 3psi_A         1103 IIVEYLQ 1109 (1219)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            9988866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d2eyva1	109	d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo	4e-25
d1jyra_	96	d.93.1.1 (A:) Growth factor receptor-bound protein	3e-21
d2qmsa1	113	d.93.1.1 (A:420-532) Growth factor receptor-bound	7e-21
d1d4ta_	104	d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sap	1e-20
d1nrva_	105	d.93.1.1 (A:) Growth factor receptor-bound protein	2e-20
d2fcia1	105	d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (B	9e-20
d2shpa3	108	d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Hu	2e-19
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	2e-19
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	2e-05
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	3e-19
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	2e-04
d1r1qa_	97	d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA	3e-19
d2shpa2	109	d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Huma	3e-19
d1jwoa_	97	d.93.1.1 (A:) Csk homologous kinase Chk {Human (Ho	5e-19
d1i3za_	103	d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat	5e-19
d1qada_	107	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	8e-19
d1rpya_	86	d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus nor	9e-19
d1opka2	101	d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (M	1e-18
d2c9wa2	103	d.93.1.1 (A:32-134) Suppressor of cytokine signali	2e-18
d1mila_	104	d.93.1.1 (A:) Shc adaptor protein {Human (Homo sap	3e-18
d1rjaa_	100	d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tu	3e-18
d2oq1a1	130	d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70	4e-18
d2oq1a2	124	d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-7	8e-18
d1o48a_	106	d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo s	1e-17
d1k9aa2	101	d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (	1e-17
d1lkka_	105	d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo	1e-17
d1uura3	131	d.93.1.1 (A:577-707) STAT homologue {Dictyostelium	2e-17
d1xa6a2	141	d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal dom	3e-17
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	3e-17
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	3e-05
d1qcfa2	103	d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {H	9e-17
d1luia_	108	d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mou	1e-16
d1a81a2	125	d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (H	2e-16
d1blja_	114	d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mou	2e-16
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-16
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-06
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	2e-16
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	3e-04
d1g83a2	104	d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (H	3e-16
d1fu6a_	111	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	3e-16
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-16
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-10
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	7e-16
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	1e-07
d2izva2	112	d.93.1.1 (A:274-385) Suppressor of cytokine signal	9e-16
d1a81a1	129	d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Hom	1e-15
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	1e-15
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	2e-04
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	3e-15
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	6e-08
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	3e-15
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	0.001
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	4e-15
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	1e-09
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-15
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-08
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	6e-15
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	7e-15
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	2e-07
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	8e-15
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	3e-06
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	8e-15
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	5e-08
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	8e-15
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	4e-04
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	1e-14
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	8e-05
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	1e-14
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	9e-06
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	1e-14
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	1e-06
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	2e-14
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	2e-05
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	2e-14
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	5e-09
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	2e-14
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	6e-05
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	3e-14
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	7e-12
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	3e-14
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	1e-06
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	4e-14
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	5e-06
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	4e-14
d2cs0a1	106	d.93.1.1 (A:8-113) Hematopoietic SH2 domain contai	8e-14
d1bg1a3	141	d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus)	2e-13
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	4e-13
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	7e-06
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	7e-13
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-09
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	7e-13
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	6e-05
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	9e-13
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	1e-12
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	7e-05
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	3e-12
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	4e-04
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	4e-12
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	7e-12
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	2e-04
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	1e-11
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	6e-05
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-11
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-06
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	1e-11
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	2e-04
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	1e-11
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	1e-04
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	4e-11
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-11
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	7e-07
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	1e-10
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	1e-10
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	8e-10
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	6e-06
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	9e-10
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	2e-05
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	1e-09
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	8e-09
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	1e-08
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	0.001
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-07

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (235), Expect = 4e-25
 Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 14/110 (12%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK------ 65
           SWY+G ++RQEA A LL  + +G FLVRDS+T  G+YVL V EN++VSHYIIN       
Sbjct: 1   SWYWGRLSRQEAVA-LLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPP 59

Query: 66  -------ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
                         +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P ++
Sbjct: 60  VPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 109

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (207), Expect = 3e-21
 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + +    +  
Sbjct: 5  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR----DGA 60

Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYL 97
            Y +    F+ L  L+ +++   +
Sbjct: 61 GKYFLWVVKFNSLNELVDYHRSTSV 85

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 7e-21
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           H    W+ G ++R+E+Q ++  +   +G FLVR+S      +VL +    KV HY+I   
Sbjct: 7   HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILP- 65

Query: 67  TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATKT 109
           +  E +  + +  G   F+DL  L+ F++++   L    L    T+ 
Sbjct: 66  SEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPC-LLRHCCTRV 111

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 1e-20
 Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 9   DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
           D  + Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++   
Sbjct: 2   DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61

Query: 69  TEQ--QTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATK 108
                +T   +  + F  + +L++ ++        PL  P  K
Sbjct: 62  GSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEK 104

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (202), Expect = 2e-20
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           H    W+ G ++R+E+  I+  +   +G FL+RDS +    +VL +  + K+ ++ I   
Sbjct: 2   HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILP- 60

Query: 67  TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
              + QT + +  G+  FSDL  L+ FY+++   L    L     +
Sbjct: 61  CEDDGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPC-KLKHHCIR 105

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.1 bits (197), Expect = 9e-20
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 3   GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
           G+   H+   WY   +TR +A+ +L+    +GAFLVR  N     Y +  +   K+ H  
Sbjct: 1   GSPGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS-YAISFRAEGKIKHCR 59

Query: 63  INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
           + +     +     +G+  F  L  L+++Y+ H L     L  P  +
Sbjct: 60  VQQ-----EGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINE 101

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 2e-19
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK------I 66
           W+ G ++ +EA+ +L  +  +G+FLVR+S +  G++VL V+  +        K      +
Sbjct: 2   WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 61

Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
              ++      G + F  L  L+  YK + +  +
Sbjct: 62  IRCQELKYDVGGGERFDSLTDLVEHYKKNPMVET 95

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (192), Expect = 2e-19
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVE 260
           N  D+  L  + GDI+++        W  E   GK G  P  +VE
Sbjct: 11  NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (192), Expect = 3e-19
 Identities = 19/63 (30%), Positives = 36/63 (57%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +T  ++KV+A YD+   + +DL  +K D   ++ +    WW A++ +G+ G IP  YV +
Sbjct: 4   STSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63

Query: 166 YSE 168
             +
Sbjct: 64  AED 66

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 208 ARVKQVRVPNAYDKTA---LKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIP 263
           + +K+V     Y       L+L  GD   +  ++N+      + NG+ G+ P  +V    
Sbjct: 6   SELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

Query: 264 TN 265
            +
Sbjct: 66  DS 67

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.4 bits (193), Expect = 3e-19
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           W+   ++R +A+  LL  KD G F++R S +  G++ + V+  + V H+ + + T    
Sbjct: 7  EWFHEGLSRHQAEN-LLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTK--- 62

Query: 72 QTCYKIGDKTFSDLPSLLAFYKVHYL 97
             Y +  + F  L  L+ +Y+   +
Sbjct: 63 -GNYFLWTEKFPSLNKLVDYYRTTSI 87

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (194), Expect = 3e-19
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+   +T  EA+ +LL+   +G+FL R S +  G+  L V+ N  V+H  I         
Sbjct: 5  WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQN----TGD 60

Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYL 97
               G + F+ L  L+ +Y  H+ 
Sbjct: 61 YYDLYGGEKFATLAELVQYYMEHHG 85

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (192), Expect = 5e-19
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++ QEA    L   ++G FLVR+S    G+YVLCV     V HY +         
Sbjct: 6   WFHGKISGQEAVQ-QLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDG---- 60

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
                    F +L  ++  Y        + L++P  K
Sbjct: 61  HLTIDEAVFFCNLMDMVEHYSKDKGAICTKLVRPKRK 97

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (192), Expect = 5e-19
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ- 71
           +Y G +T++E +A+LL    +G FL+RDS ++ G   LCV     V  Y I +  +    
Sbjct: 5   YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64

Query: 72  -QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
            +T        F +L  L++ Y      L    L  P  +
Sbjct: 65  IETDAHTPRTIFPNLQELVSKYGKPGQGLVV-HLSNPIMR 103

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 107

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.8 bits (191), Expect = 8e-19
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
           HD  +W  G   R +A+  LL  K +G FLVR+S+   G Y   V  + +V H     I 
Sbjct: 6   HDEKTWNVGSSNRNKAEN-LLRGKRDGTFLVRESSKQ-GCYACSVVVDGEVKHC---VIN 60

Query: 68  NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
            T     +      +S L  L+  Y+   L   
Sbjct: 61  KTATGYGFAEPYNLYSSLKELVLHYQHTSLVQH 93

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.9 bits (189), Expect = 9e-19
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 13 WYFGMMTRQEAQAILLSE--KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
          W+ G ++R +A  ++L+   + +G F++R S T  G  VL      K  H  ++      
Sbjct: 7  WFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSL----N 62

Query: 71 QQTCYKIGDKTFSDLPSLLAFYK 93
                +    F  +  +L  + 
Sbjct: 63 GHGQCHVQHLWFQSVFDMLRHFH 85

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.4 bits (190), Expect = 1e-18
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 9   DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY   +I  
Sbjct: 3   EKHSWYHGPVSRNAAEY-LLSSGINGSFLVRESESSPGQRSISLRYEGRVYHY---RINT 58

Query: 69  TEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
                 Y   +  F+ L  L+  +      L T  L  PA K
Sbjct: 59  ASDGKLYVSSESRFNTLAELVHHHSTVADGLIT-TLHYPAPK 99

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 2e-18
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 1  MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
          +        +  WY+G MT  EA+  L    +   FL+RDS+       + VK +   ++
Sbjct: 5  LAKALRELGQTGWYWGSMTVNEAKEKLKEAPEG-TFLIRDSSHSDYLLTISVKTSAGPTN 63

Query: 61 YIINKITNT---EQQTCYKIGDKTFSDLPSLLAFY 92
            I         +   C K   K F  +  L+ +Y
Sbjct: 64 LRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYY 98

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 3e-18
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 14/104 (13%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLV-----DPE 60

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSP------LIKPATKTI 110
              +  D  F  +  L++++  ++L          L +P  + +
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 3e-18
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 13  WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           W+FG ++R EA   L +E    GAFL+R S     +YVL V++   V HY   KI     
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHY---KIWRRAG 60

Query: 72  QTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
              +     +F  LP L+ +++   L     L  P  K
Sbjct: 61  GRLHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCRK 98

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 4e-18
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
           DP     +++G ++R EA+  L      +G FL+R     LG YVL +  + +  H+   
Sbjct: 1   DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHF--- 57

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
            I      T    G K       L  FY      L    L KP  +
Sbjct: 58  PIERQLNGTYAIAGGKAHCGPAELCEFYSRDPDGLPC-NLRKPCNR 102

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 8e-18
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           H+R  WY   +TR+EA+  L S  + +G FL+R      G Y L +     V HY    I
Sbjct: 26  HERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHY---LI 81

Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           +  +           F  L  L+ + K+ 
Sbjct: 82  SQDKAGKYCIPEGTKFDTLWQLVEYLKLK 110

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 1e-17
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVL--CVKENNKVSHYIINKITNT 69
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L     +N K  +    KI   
Sbjct: 7  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 66

Query: 70 EQQTCYKIGDKTFSDLPSLLAFYKVH 95
          +    Y      F+ L  L+A+Y  H
Sbjct: 67 DSGGFYITSRTQFNSLQQLVAYYSKH 92

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 1e-17
 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G +TR++A+  LL   + G FLVR+S    G+Y LCV    KV HY I         
Sbjct: 6   WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY----HAS 60

Query: 73  TCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
                 +  F +L  L+  Y      L T  LIKP   
Sbjct: 61  KLSIDEEVYFENLMQLVEHYTTDADGLCT-RLIKPKVM 97

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 1e-17
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 13 WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN--KITNT 69
          W+F  ++R++A+  LL+    +G+FL+R+S +  G++ L V++ ++    ++   KI N 
Sbjct: 6  WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 65

Query: 70 EQQTCYKIGDKTFSDLPSLLAFYKVH 95
          +    Y     TF  L  L+  Y   
Sbjct: 66 DNGGFYISPRITFPGLHELVRHYTNA 91

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]} Length = 131

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 74.6 bits (183), Expect = 2e-17
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 12/110 (10%)

Query: 7   PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK---ENNKVSHYII 63
              +    +G M RQE     L  +D G F++R S    G + +         ++ HY++
Sbjct: 5   TLWQEGIIYGYMGRQEVND-ALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLV 63

Query: 64  NKITNTEQQTCYKIGDKTFSD-LPSLLAFYKVHYLDTSPLIKPATKTIEK 112
                   +       KTF D L     F  +          P    + K
Sbjct: 64  QPNDTAAAK-------KTFPDFLSEHSQFVNLLQWTKDTNGAPRFLKLHK 106

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 3e-17
 Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 7   PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           P      + G+++R++A  +L      GA+++R+S    G Y L ++  N+  +Y +   
Sbjct: 31  PKYYGREFHGIISREQADELL--GGVEGAYILRESQRQPGCYTLALRFGNQTLNYRL--- 85

Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYKV-HYLDTSP 101
                   + +G+K F  +  L+    +  Y++T  
Sbjct: 86  ---FHDGKHFVGEKRFESIHDLVTDGLITLYIETKA 118

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.1 bits (177), Expect = 3e-17
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           E V+A YDF   +  DL  ++    I++ K++ HWW A++  G  G IP  YV     
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS 60

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEG-ELNGKTGHFPFTHVEFIPTNE 266
            A +   L+LE G    + + N    W   +  G  G+ P  +V    +N 
Sbjct: 12  QATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNN 62

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 9e-17
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 13  WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN--KITNT 69
           W+F  ++R++A+  LL+     G+F++RDS T  G+Y L V++ +      +   KI   
Sbjct: 3   WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTL 62

Query: 70  EQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATKT 109
           +    Y     TFS L  L+  YK     L    L  P   +
Sbjct: 63  DNGGFYISPRSTFSTLQELVDHYKKGNDGLCQ-KLSVPCMSS 103

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (176), Expect = 1e-16
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           +  +   WY   ++R +A+ +LL     GAF+VRDS T  G Y + V     +S     K
Sbjct: 1   NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIK 59

Query: 66  -----ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKP 105
                 TN   +  Y      F  +P L+ +++ +   L T  L  P
Sbjct: 60  HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVT-RLRYP 105

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-16
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
             H++  W+ G ++R+E++ I+L   K NG FL+R  +   G+Y LC+    KV HY   
Sbjct: 24  TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHY--- 79

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
           +I   +         K F  L  L+  Y      L    L  P  K
Sbjct: 80  RIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKADGLLR-VLTVPCQK 124

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (175), Expect = 2e-16
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
          +  +   W+F  ++R++A+  LL+     G+FL+R+S +  G + L VK+       + +
Sbjct: 7  ETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKH 66

Query: 65 -KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           KI + +    Y     TF  L +L+  Y   
Sbjct: 67 YKIRSLDNGGYYISPRITFPTLQALVQHYSKK 98

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (171), Expect = 2e-16
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
               V A +D+     D+L F K+ I+  V K E  WW       +    P  YV++   
Sbjct: 5   FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKT-GHFPFTHVEFIPTNET 267
            A  +  L      II+  +    G W G+  GK    FP  +VE +   E 
Sbjct: 16  KAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEG 67

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 2e-16
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYVQ 164
           ++ +  V   Y F     ++L F+K + + V+ K E    WW  +N  G+VG +P  YV 
Sbjct: 3   SRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVV 62

Query: 165 KYSEGMSI 172
             S+G ++
Sbjct: 63  VLSDGPAL 70

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 217 NAYDKTALKLEIGDIIKVT-KTNINGQW--EGELNGKTGHFPFTHVEFIP 263
           ++  +  L  E G+ ++V  K   + +W       G+ G  P  +V  + 
Sbjct: 16  SSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 3e-16
 Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLC--VKENNKVSHYI 62
           D      WYFG + R++A+  LLS     G FL+R+S T  G Y L     ++ K  H  
Sbjct: 1   DSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVK 60

Query: 63  INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKP 105
             KI   +    Y      F  L  L+  Y      L +  L+ P
Sbjct: 61  HYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLSS-RLVVP 104

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.8 bits (173), Expect = 3e-16
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN-YVLCVKENNKVSHYIINKITNTE 70
            WY+G ++R+E    L    D G FLVRD++T +   Y L +++        I       
Sbjct: 12  EWYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKSIKI----FHR 66

Query: 71  QQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATK 108
                     TF+ +  L+  Y+   L          L+ P +K
Sbjct: 67  DGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (170), Expect = 6e-16
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 98  DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGS 157
            +S    PA   + +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G 
Sbjct: 22  PSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGL 80

Query: 158 IPVPYVQKYSE 168
            P  YV+  ++
Sbjct: 81  FPSNYVKMTTD 91

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 6e-10
 Identities = 32/121 (26%), Positives = 42/121 (34%), Gaps = 37/121 (30%)

Query: 152 SGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVK 211
           SG+ G  P  +V+               L  SS                E   PAF  V 
Sbjct: 6   SGQKGWFPASHVKL--------------LGPSS----------------ERATPAFHPVC 35

Query: 212 QVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
           QV     YD  A     L    G +I V   +    W+GE+NG TG FP  +V+    + 
Sbjct: 36  QVIA--MYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS 93

Query: 267 T 267
            
Sbjct: 94  G 94

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.2 bits (167), Expect = 7e-16
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+A YD+    P ++  KK DIL +++   + WW  + ++   G +P  YV+K
Sbjct: 1   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 54

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
                  + ++ GDI+ +  +     W+ E+N + G  P  +V+ +
Sbjct: 10  QEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 55

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 9e-16
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 7   PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
             + N  Y+G+M +  A+A LL  K  G FL+RDS      + +  +  ++  H  I + 
Sbjct: 7   QINNNPCYWGVMDKYAAEA-LLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQW 65

Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYK-------VHYLDTSPLIKP 105
            +      +        D+  LL  YK          L ++PLI+ 
Sbjct: 66  NHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRT 111

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 1e-15
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 8  HDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           +   ++FG +TR+EA+  L+     +G +L+R S   LG + L V    K  HY    I
Sbjct: 2  ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHY---TI 58

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
                T    G +T +    L  ++   
Sbjct: 59 ERELNGTYAIAGGRTHASPADLCHYHSQE 87

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (165), Expect = 1e-15
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 165
            +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV  
Sbjct: 3   FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVE 260
            A  +  L    G+  ++  ++    WE      G+TG+ P  +V 
Sbjct: 10  EAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 66.6 bits (163), Expect = 3e-15
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           V A +DF+  +  +L FK+ D++ +++KD+ +WW  Q  +   G  P  YV  Y+
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL-NNRRGIFPSNYVCPYN 58

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 46.2 bits (110), Expect = 6e-08
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           +D        L  + GD+I +   +    WEG+LN + G FP  +V 
Sbjct: 9   FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 3e-15
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           + IAKY+F G    DLPF K D+L +V+   + +W+ A+N  G  G IP  YVQK   
Sbjct: 8   ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG 65

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 217 NAYDKTALKLEIGDIIK-VTKTNINGQWEGEL-NGKTGHFPFTHVEFIP 263
           +   +  L    GD++  V  T     ++ +   G+ G  P  +V+   
Sbjct: 16  HGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 64

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (162), Expect = 4e-15
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 108 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           K   +V A + ++   P+DL F++ DI++V+SK  E W   ++  G+VG  P  +V+ 
Sbjct: 3   KKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES-KGKVGIFPKVFVED 59

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 211 KQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
            QV     +   A     L+ + GDII V         EGE  GK G FP   VE   T
Sbjct: 6   SQVEA--LFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSAT 62

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (162), Expect = 5e-15
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           E+ IA Y +   +P DL F + + ++V  KD E WWT        G  P  YV+    G 
Sbjct: 9   EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGE-WWTGSI-GDRSGIFPSNYVKPKDSGP 66

Query: 171 S 171
           S
Sbjct: 67  S 67

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 5e-08
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
           ++ +   L    G+ I VT+ +    W G +  ++G FP  +V+   +  +S
Sbjct: 18  SSVEPGDLTFTEGEEILVTQKD-GEWWTGSIGDRSGIFPSNYVKPKDSGPSS 68

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 65.7 bits (160), Expect = 6e-15
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ +
Sbjct: 1   VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE 53

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (160), Expect = 7e-15
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YDF+  + ++L FK  +++ V+   + +WW  +N     G  P  +V 
Sbjct: 4   RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN-HRGTGLFPSNFVT 55

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           YD  A     L  + G++I V   +    W+GE +  TG FP   V 
Sbjct: 9   YDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 55

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (164), Expect = 8e-15
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           E  +A   +   + D++   + + + V+ K  + WW  +      G  P  Y+QK  +  
Sbjct: 15  EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK-DDVTGYFPSMYLQKSGQ-- 71

Query: 171 SILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALK 225
                     D S      ++  P R++ +        R ++    +AY + +++
Sbjct: 72  ----------DVSQAQRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRNSVR 116

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 10/56 (17%), Positives = 25/56 (44%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETN 272
            A +   + L  G+ ++V    ++G W    +  TG+FP  +++    + +  +  
Sbjct: 24  TAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQRQ 79

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (160), Expect = 8e-15
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           V A +DFD  +  +L F++ D + V+   + +WW      G+ G  P  YV  
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-HGQTGMFPRNYVTP 55

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 5e-08
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           +D        L    GD I V   +    W+G  +G+TG FP  +V 
Sbjct: 8   FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 54

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (160), Expect = 8e-15
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           VIA + ++ +   DL F+K + L ++ +  E W      +G+ G IP  +V K
Sbjct: 9   VIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 260
                  L  E G+ +++ + +      +    G+ G  PF  V 
Sbjct: 16  EPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVA 60

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 1e-14
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSE 168
           +   +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV     
Sbjct: 2   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 8e-05
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNE 266
            +  +T L  + G+ +++        W       G+TG+ P  +V    + +
Sbjct: 12  ESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 1e-14
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           V+A YD++    +DL F+K D ++V+ +  E W      + + G IP  YV +
Sbjct: 7   VVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVAR 59

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 9e-06
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFIPTNET 267
            A     L  + GD + V + +            K G+ P  +V  + + ET
Sbjct: 14  EAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLET 65

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 1e-14
 Identities = 16/62 (25%), Positives = 23/62 (37%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
             K  A Y        +L F    +   V   +E  W    ++G+ G IP  YV+  S  
Sbjct: 10  FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP 69

Query: 170 MS 171
            S
Sbjct: 70  SS 71

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 1e-06
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTK-TNINGQWEGELNGKTGHFPFTHVEFIP 263
            ++ +    Y   A     L    G +      +   G  EG LNGKTG  P  +VEF+ 
Sbjct: 10  FRKAKA--LYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLS 67

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.4 bits (157), Expect = 2e-14
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQ 164
             A+YD+D  + ++L F +ND +I +   ++ WW  +    G  G  P  YV 
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 7/51 (13%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262
           YD  A     L     D I   +   +  W GEL  +G  G FP  +V   
Sbjct: 7   YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG 57

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (157), Expect = 2e-14
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +    A YDF+  + D+L F+  +++ V+      WWT +    ++G  P  YV  
Sbjct: 1   VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL-HNKLGLFPANYVAP 55

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (118), Expect = 5e-09
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           V+  R    YD  A     L    G++++V  ++    W G L+ K G FP  +V 
Sbjct: 1   VRWARA--LYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (157), Expect = 2e-14
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 165
           +   A YD+   D D++ FK  D +I V   +E W       +G  G +P  YV+ 
Sbjct: 4   KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA 59

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (89), Expect = 6e-05
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262
            A D   +  + GD I   +    G   G +   G+TG  P  +VE I
Sbjct: 13  MAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (157), Expect = 3e-14
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           V A+++F   + D+L   K DI+ V   +E  WW     +G  G  P  YV++   
Sbjct: 13  VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL-NGRTGWFPSNYVREIKS 67

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (140), Expect = 7e-12
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 211 KQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
            Q+ V   ++        L +  GDII VT+    G WEG LNG+TG FP  +V  I ++
Sbjct: 9   HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSS 68

Query: 266 ETSVETNG 273
           E S  ++G
Sbjct: 69  ERSGPSSG 76

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.6 bits (155), Expect = 3e-14
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQ 164
           K +A Y F G +  DLPF+K D++ ++ K D ++ W    ++G  G  P  YV+
Sbjct: 3   KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 219 YDKTA-----LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFI 262
           Y         L    GD+I + K   + N  W G +NG+ G FP  +VE +
Sbjct: 8   YSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 58

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (155), Expect = 4e-14
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (96), Expect = 5e-06
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 260
           YD  A     L  + GDI+KV     +  W + ELNGK G  P  ++E
Sbjct: 7   YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.9 bits (160), Expect = 4e-14
 Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 13/131 (9%)

Query: 102 LIKPATK-TIEKVIAKYDFDGNDPD-------DLPFKKNDILIVVSKDEEHWWTAQNI-- 151
           L +  +K     V     + G   +        + F   D L +  K    WW  + +  
Sbjct: 14  LERAKSKPVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKE 73

Query: 152 SGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVK 211
             E+G IP P   +          +  H   SS +        +            A+ K
Sbjct: 74  GCEIGFIPSPLRLENIRIQQEQKRKRFHGGKSSGN-SSSSLGEMVSGTFRATPTTTAKQK 132

Query: 212 QVRVPNA--YD 220
           Q    +   YD
Sbjct: 133 QKVTKHIPPYD 143

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (155), Expect = 8e-14
 Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
            W+ G ++R++A+  LL  +  G+FL+R S++ +G Y L  K  +   H+    +   + 
Sbjct: 10  EWFHGAISREDAEN-LLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHF---MVKLLDD 64

Query: 72  QTCYKIGD-KTFSDLPSLLAFYKVHYLDTSP--LIKPATK 108
            T    G+    + L +L+ F++   ++     L +P  +
Sbjct: 65  GTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQ 104

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 12/110 (10%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNT-ILGNYVLCVKENNKVSHYIINKITNTEQ 71
           +  G ++++  +A +LS K  G FL+R S +   G       E +      I        
Sbjct: 9   YIMGFISKERERA-ILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQ------S 61

Query: 72  QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKP----ATKTIEKVIAKY 117
              Y            ++  YK+       +            E+   KY
Sbjct: 62  VEPYTKQQLNNMSFAEIIMGYKIMDATNILVSPLVYLYPDIPKEEAFGKY 111

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVPYVQKY 166
            + A +D++  + D+LP K+ D + ++ +   DE  WW A+  + + G +P   +  Y
Sbjct: 6   VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL-NDKEGYVPRNLLGLY 62

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 7e-06
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 217 NAYDKTALKLEIGDIIKVTKT---NINGQWEGELNGKTGHFPFTHVEFIP 263
              +   L ++ GD + +      +    W   LN K G+ P   +   P
Sbjct: 14  EPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 63

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 7e-13
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           K  A   +     + L F K+DI+ V+ + E  W+   +  G  G  P  YV+    
Sbjct: 12  KAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVH--GGRGWFPKSYVKIIPG 66

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
            A     L     DII V +      W GE++G  G FP ++V+ IP +E+ 
Sbjct: 20  TAKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYVKIIPGSESG 70

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 7e-13
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---WWTAQNISGEVGSIPVPYVQKYS 167
           +   A Y F   +P++L    N  L ++   +      W    ++G+ G +P  Y++K  
Sbjct: 14  QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE 73

Query: 168 EGMS 171
            G S
Sbjct: 74  SGPS 77

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 217 NAYDKTALKLEIGDIIKVTK----TNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
            A +   L +     +K+ +    T     W  E+NGK G+ P  ++    +  +S
Sbjct: 23  KARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSS 78

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 61.1 bits (148), Expect = 9e-13
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 10/72 (13%)

Query: 102 LIKPATKTIE-KVIAKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNI-- 151
           L K  TK +   V     +     DD+P       F+  D L V  K    WW  + +  
Sbjct: 12  LEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKE 71

Query: 152 SGEVGSIPVPYV 163
             E+G IP P  
Sbjct: 72  GCEIGFIPSPVK 83

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.4 bits (144), Expect = 1e-12
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +A YDF  +  + L   K + L V+  +    W         G +P  Y+ 
Sbjct: 3   FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYIT 54

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (88), Expect = 7e-05
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFI 262
            A     L +  G+ ++V   N NG+W E +     G  P  ++  +
Sbjct: 10  VASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV 56

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 110 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 163
           +E   A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G +G IP  Y+
Sbjct: 5   LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 64

Query: 164 Q 164
           +
Sbjct: 65  E 65

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 220 DKTALKLEIGDIIKVTK-----TNINGQWEGEL-NGKTGHFPFTHVEFI 262
            +  + L+ GD++ +          +  W+    NG  G+ P+ ++E I
Sbjct: 19  PEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 67

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.1 bits (145), Expect = 4e-12
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 102 LIKPATKTIE-KVIAKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNIS- 152
           L +   K +   V     + G   ++ P       F+  D L +  K    WW  + +  
Sbjct: 14  LERAKHKPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKE 73

Query: 153 -GEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTP 194
            G++  IP P   +          R     SS   +  +++ P
Sbjct: 74  GGDIAFIPSPQRLESIRLKQEQKARRSGNPSSLSDIGNRRSPP 116

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (138), Expect = 7e-12
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +   +KYDF   +  +L   K+D+L ++    + WW  +N SG+ G +P   +     
Sbjct: 2   KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQ-WWKVRNASGDSGFVPNNILDIMRT 58

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 12/63 (19%)

Query: 207 FARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 261
           +A+ K       YD  A     L +   D++++             +G +G  P   ++ 
Sbjct: 3   YAKSK-------YDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDI 55

Query: 262 IPT 264
           + T
Sbjct: 56  MRT 58

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 1e-11
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           ++   A  D++     ++     D++ VV K E  WW  Q    + G IP  +++ 
Sbjct: 2   LQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK-AKRGWIPASFLEP 56

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 6e-05
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 212 QVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             R    Y+KT+   + L  GD+++V + + +G W  ++  K G  P + +E +
Sbjct: 4   TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL 57

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 1e-11
 Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ----NISGEVGSIPVPYVQKY 166
           E       +  +  + L      +++++ K+   WW  +        + G  P  +V+  
Sbjct: 8   EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL 67

Query: 167 SE 168
             
Sbjct: 68  GP 69

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 211 KQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELN-----GKTGHFPFTHVEFI 262
           +  +V +AY  +    L L  G +I + K N +G W+GEL       + G FP +HV+ +
Sbjct: 8   EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL 67

Query: 263 PTNETSVETNGNG 275
             +        +G
Sbjct: 68  GPSSERASGPSSG 80

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.8 bits (137), Expect = 1e-11
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQKYS 167
           +KV   +    GN+   L F + D+L ++  +E+    +   + +   G  P  Y +  S
Sbjct: 8   QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

Query: 168 E 168
            
Sbjct: 68  G 68

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 220 DKTALKLEIGDIIKVT-KTNINGQWEGELN--GKTGHFPFTHVEFIP 263
           +KT L    GD++ +      +G   GE +     G FP ++ + + 
Sbjct: 21  NKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 1e-11
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           E  +A   +   + D++   + + + V+ K  + WW  +      G  P  Y+Q
Sbjct: 1   EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR-KDDVTGYFPSMYLQ 53

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
            A +   + L  G+ ++V    ++G W    +  TG+FP  +++
Sbjct: 10  TAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (135), Expect = 4e-11
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 14/81 (17%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWT------ 147
           T+  +      + KV A++D+   D D+L  K  D+++V+        +E W        
Sbjct: 1   TTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESD 60

Query: 148 ---AQNISGEVGSIPVPYVQK 165
               + +    G  P  + ++
Sbjct: 61  WNQHKELEKCRGVFPENFTER 81

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 4e-11
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQNISGEVGSIPVPYVQKYSEG 169
               A Y F+  + D++ F   DI+ V  K      W   +  G  G  P  YV+K    
Sbjct: 6   SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS 65

Query: 170 MSILSLRNLHLDSSSHHVPQQQTTP 194
            +  ++                + P
Sbjct: 66  ENEKAVSPKKALLPPTVSLSATSGP 90

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 7e-07
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 217 NAYDKTALKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
            A +   +    GDII+V +      G   G   G  G FP  +VE +P++E  
Sbjct: 15  EARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE 68

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.1 bits (132), Expect = 1e-10
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 113 VIAKYDFDGNDPD-----DLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPY 162
           + A +D+D           L F+  D+L V+   +E WW A+ +     + ++G IP   
Sbjct: 4   IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKR 63

Query: 163 VQKYSE 168
             +  E
Sbjct: 64  RVERRE 69

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (130), Expect = 1e-10
 Identities = 6/66 (9%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPYVQK 165
             +    D+     +++   + +++ V++ ++++                G +P   +  
Sbjct: 8   STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP 67

Query: 166 YSEGMS 171
           +S   S
Sbjct: 68  FSGPSS 73

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (124), Expect = 8e-10
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNI-SGEVGSIPVPY 162
           P  +  ++        G     L     DI+ +   +   +WW  +N  + EVG  P   
Sbjct: 5   PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR 64

Query: 163 VQKY 166
           V  Y
Sbjct: 65  VHPY 68

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 6e-06
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 216 PNAYDKTALKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHVE 260
           P       L+L  GDI+++TK      W EG      + G FP   V 
Sbjct: 19  PPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 9e-10
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 104 KPATKTIEKVIAKYDFD------GNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVG 156
           +  +  +   +A+Y ++       N   +LP      L V    DE+ ++  + + G+ G
Sbjct: 11  QRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRG 70

Query: 157 SIPVPYVQKYSE 168
            +P  +V    +
Sbjct: 71  LVPSNFVDFVQD 82

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 216 PNAYDKTALKLEIGDII-KVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNETSVET 271
           PN   +  L L  G  +      + +G +EGEL +G+ G  P   V+F+  NE+ + +
Sbjct: 32  PNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESRLAS 89

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (122), Expect = 1e-09
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYVQ 164
             Y +   D D++     D + +V++D          + +GE G +P  Y++
Sbjct: 4   VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 8e-09
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE---EHWWTAQ-------NISGEVGSI 158
            I   +A  D+   D   L   +  ++ V SK +     +W          +++  +G  
Sbjct: 20  PISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYF 79

Query: 159 PVPYVQKYSE 168
           P   V++   
Sbjct: 80  PSSIVREDQT 89

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 1e-08
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 16/74 (21%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHWWTAQN-ISGE 154
            +  A YD+     +D+     DIL V                  +E  W    N  +GE
Sbjct: 4   YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGE 63

Query: 155 VGSIPVPYVQKYSE 168
            G  P  YV+    
Sbjct: 64  RGDFPGTYVEYIGR 77

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 17/70 (24%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNI---------------NGQWEG--ELNGKTGHFPFTHV 259
               +  + L +GDI+ V K ++                G   G  E  G+ G FP T+V
Sbjct: 13  KKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYV 72

Query: 260 EFIPTNETSV 269
           E+I   + S 
Sbjct: 73  EYIGRKKISP 82

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE---EHWWTAQNISGEVGSIPVPYVQKYS 167
           +   A+ +F+     D+   + D++ V+ K +          +     G +   +++ Y+
Sbjct: 18  KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN 77

Query: 168 EGMS 171
              S
Sbjct: 78  PRRS 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1rjaa_	100	Tyrosine-protein kinase 6 (Breast tumor kinase, Br	99.94
d1nrva_	105	Growth factor receptor-bound protein 10, GRB10 {Hu	99.94
d2fcia1	105	Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId:	99.94
d1jwoa_	97	Csk homologous kinase Chk {Human (Homo sapiens) [T	99.94
d1opka2	101	Abl tyrosine kinase {Mouse (Mus musculus) [TaxId:	99.93
d1k9aa2	101	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.93
d1d4ta_	104	The Xlp protein Sap {Human (Homo sapiens) [TaxId:	99.93
d2oq1a1	130	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.93
d1lkka_	105	p56-lck tyrosine kinase {Human (Homo sapiens) [Tax	99.93
d1a81a1	129	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.93
d2oq1a2	124	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.93
d2qmsa1	113	Growth factor receptor-bound protein 7 {Human (Hom	99.93
d1i3za_	103	Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus	99.92
d1jyra_	96	Growth factor receptor-bound protein 2 (GRB2) {Hum	99.92
d1o48a_	106	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.92
d2shpa2	109	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.92
d1a81a2	125	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.92
d1blja_	114	P55 Blk protein tyrosine kinase {Mouse (Mus muscul	99.92
d1mila_	104	Shc adaptor protein {Human (Homo sapiens) [TaxId:	99.92
d1g83a2	104	Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId:	99.92
d1qcfa2	103	Hemopoetic cell kinase Hck {Human (Homo sapiens) [	99.91
d1luia_	108	Itk/tsk protein tyrosine kinase {Mouse (Mus muscul	99.91
d1r1qa_	97	GRB2-related adaptor protein 2 (MONA, GRID) {Mouse	99.91
d2cs0a1	106	Hematopoietic SH2 domain containing protein HSH2D	99.9
d2izva2	112	Suppressor of cytokine signaling 4, SOCS-4 {Human	99.9
d2eyva1	109	Crk proto-oncogen {Human (Homo sapiens) [TaxId: 96	99.9
d1qada_	107	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.89
d1rpya_	86	Adaptor protein Aps {Rat (Rattus norvegicus) [TaxI	99.88
d1fu6a_	111	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.87
d2shpa3	108	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.87
d2c9wa2	103	Suppressor of cytokine signaling 2, SOCS-2 {Human	99.86
d1xa6a2	141	Beta-chimaerin, N-terminal domain {Human (Homo sap	99.79
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.75
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.64
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.63
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.62
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.61
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.58
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.57
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.57
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.56
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.54
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.54
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.54
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.53
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.52
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.5
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.5
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.49
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.49
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.49
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.49
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.49
d1bg1a3	141	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	99.49
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.48
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.48
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.48
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.48
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.48
d1uura3	131	STAT homologue {Dictyostelium discoideum [TaxId: 4	99.48
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.48
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.48
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.47
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.46
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.46
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.45
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.45
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.45
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.44
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.44
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.43
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.43
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.43
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.42
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.42
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.41
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.41
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.41
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.41
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.4
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.4
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.4
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.39
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.39
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.38
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.38
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.38
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.37
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.36
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.36
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.35
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.35
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.35
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.35
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.34
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.34
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.34
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.33
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.33
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.33
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.33
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.33
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.33
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.32
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.3
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.29
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.29
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.29
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.29
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.29
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.28
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.27
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.27
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.26
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.24
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.23
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.22
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.2
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.2
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.16
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.13
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.12
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.08
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.02
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.86
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.74
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.57
d1bf5a3	142	STAT-1 {Human (Homo sapiens) [TaxId: 9606]}	97.69
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	96.77
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	93.97
d3buxb3	88	Cbl {Human (Homo sapiens) [TaxId: 9606]}	89.14

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-27  Score=173.31  Aligned_cols=95  Identities=31%  Similarity=0.558  Sum_probs=84.9

Q ss_pred             CCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChhh
Q psy5076          10 RNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS   87 (288)
Q Consensus        10 ~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~   87 (288)
                      ++|||||.|+|++||++|+. ...+|+||||+|.+..|.|+|||+.+++|+||+|.+...+   . |++. +..|+||.+
T Consensus         1 sepWy~g~isR~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~l~~~~~F~sl~~   76 (100)
T d1rjaa_           1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGG---R-LHLNEAVSFLSLPE   76 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSS---C-EEEETTEEESSHHH
T ss_pred             CCCCcCCCCCHHHHHHHHhccCCCCCeEEeecCCCCCCCEEEEEEcCCCceEEEEEECCCC---C-EEecCCCccCCHHH
Confidence            58999999999999999975 4567999999999889999999999999999999987654   4 7775 678999999


Q ss_pred             hhhhheecccC-CCcccccccc
Q psy5076          88 LLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        88 LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ||+||+.++++ .+.|+.||++
T Consensus        77 LV~~y~~~~~~~~~~L~~Pc~~   98 (100)
T d1rjaa_          77 LVNYHRAQSLSHGLRLAAPCRK   98 (100)
T ss_dssp             HHHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHHhhCCCCCccCcCeecCC
Confidence            99999999987 7889999987

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=171.60  Aligned_cols=100  Identities=25%  Similarity=0.477  Sum_probs=83.5

Q ss_pred             CCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC--CcccCC
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTFSD   84 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~~F~s   84 (288)
                      |++++||||.|+|++||++|.+ ..+||+||||+|.+.+|.|+|||+.+++|+||+|.....+.... |.+.  ...|+|
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~-~~~~~~~~~F~s   80 (105)
T d1nrva_           2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTF-FSLDDGNTKFSD   80 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CC-EESSTTSSCBSS
T ss_pred             CccCcccCCCCCHHHHHHHHhhcCCCCceEEEEeCCCCCCCEEEEEEECCceeEEEEEEecCCCeEE-EEECCCCcccCC
Confidence            7899999999999999999975 45679999999999899999999999999999998865431222 5554  358999


Q ss_pred             hhhhhhhheecccC-CCcccccccc
Q psy5076          85 LPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        85 l~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      |.+||+||+.++++ ++.|..||++
T Consensus        81 l~~LV~~y~~~~~~L~~~L~~Pc~r  105 (105)
T d1nrva_          81 LIQLVDFYQLNKGVLPCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHHHHhccCcCCCCccCCcCCCC
Confidence            99999999998876 7889999874

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=3.3e-27  Score=174.14  Aligned_cols=98  Identities=28%  Similarity=0.529  Sum_probs=87.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSD   84 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~s   84 (288)
                      -.+|+.++||||.|+|++||.+|.+.+.+|+||||.|+ ..|.|+|||+.+++|+||+|...+..     |.+++..|.|
T Consensus         3 p~~he~~~Wy~g~i~R~eAe~lL~~~~~~G~FLVR~S~-~~~~yvLSv~~~~~v~H~~I~~~~~~-----~~~~~~~F~s   76 (105)
T d2fcia1           3 PGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRN-EPNSYAISFRAEGKIKHCRVQQEGQT-----VMLGNSEFDS   76 (105)
T ss_dssp             SCTTSSSCCCCSSSCSHHHHHHHHHSSSSCCEEEEECS-STTCEEEEEEETTEECCCEEBCCSSC-----EECSSSEEST
T ss_pred             CcccccCCCccCCCCHHHHHHHHHhCCCCCeEEEEecC-CCCCEEEEEEeccccEEEEEEecCCe-----EecCCcccCC
Confidence            46789999999999999999999876657999999995 48899999999999999999865433     8888889999


Q ss_pred             hhhhhhhheecccC-CCcccccccc
Q psy5076          85 LPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        85 l~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      |.+||+||+.+++. .+.|+.||++
T Consensus        77 l~~LV~~y~~~~~~~~~~L~~P~~~  101 (105)
T d2fcia1          77 LVDLISYYEKHPLYRKMKLRYPINE  101 (105)
T ss_dssp             THHHHHHHHHSCCSTTCSSCCCCCC
T ss_pred             HHHHHHHHhhCCCCCccCCCCCCCC
Confidence            99999999999987 7889999987

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=169.39  Aligned_cols=94  Identities=30%  Similarity=0.508  Sum_probs=83.1

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChhh
Q psy5076           9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS   87 (288)
Q Consensus         9 ~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~   87 (288)
                      ...|||||.|+|++||++|+... +|+||||+|++.+|.|+|||+.+++|+||+|...+++     |++. +..|+||.+
T Consensus         2 s~~PWy~g~isR~eAe~~L~~~~-~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~   75 (97)
T d1jwoa_           2 SLMPWFHGKISGQEAVQQLQPPE-DGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGH-----LTIDEAVFFCNLMD   75 (97)
T ss_dssp             TTCTTEEESCCHHHHHHHTCSCC-TTCEEEEECSSSTTCEEEEEEETTEEEEEEEEESSSE-----ESSTTSCCBSCHHH
T ss_pred             CcCCccCCCCCHHHHHHHhcCCC-CCeEEEEecCCCCccEEEEEEecCceEEEEEEEcCCc-----EEecCCcccCCHHH
Confidence            45799999999999999997655 5999999999889999999999999999999875543     7775 578999999


Q ss_pred             hhhhheecccC-CCcccccccc
Q psy5076          88 LLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        88 LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ||+||++++++ ++.|+.||++
T Consensus        76 LI~~y~~~~~~L~~~L~~P~~k   97 (97)
T d1jwoa_          76 MVEHYSKDKGAICTKLVRPKRK   97 (97)
T ss_dssp             HHHHHHHCCTTSSSCCCCBCCC
T ss_pred             HHHHHhhCCCCCCccCCccCcC
Confidence            99999998876 7889999875

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1e-26  Score=170.76  Aligned_cols=97  Identities=29%  Similarity=0.491  Sum_probs=86.0

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCCh
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL   85 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl   85 (288)
                      +++.++||||.|+|++||.+|+... +|+||||+|.+.+|.|+||++.+++|+||+|.....+   . |++. +..|+||
T Consensus         1 sLe~~~Wy~g~isR~eAe~lL~~~~-~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~g---~-~~~~~~~~F~sl   75 (101)
T d1opka2           1 SLEKHSWYHGPVSRNAAEYLLSSGI-NGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDG---K-LYVSSESRFNTL   75 (101)
T ss_dssp             SGGGSTTEEEECCHHHHHHHGGGCC-TTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS---C-EESSTTSCBSSH
T ss_pred             CcccCcccCCCCCHHHHHHHhcCCC-CCeEEEEecCCCCCCEEEEEEcCcceEEEEeEECCCC---C-EEeCCCcccCCH
Confidence            4678899999999999999998765 4999999999889999999999999999999987654   4 6665 5689999


Q ss_pred             hhhhhhheecccC-CCcccccccc
Q psy5076          86 PSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        86 ~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      .+||+||+.++.+ .+.|+.||++
T Consensus        76 ~~LI~~y~~~~~~l~~~L~~P~pr   99 (101)
T d1opka2          76 AELVHHHSTVADGLITTLHYPAPK   99 (101)
T ss_dssp             HHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHHHHhhCCCCCceECCCccCC
Confidence            9999999998876 6889999987

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-26  Score=168.88  Aligned_cols=94  Identities=33%  Similarity=0.580  Sum_probs=84.1

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChhh
Q psy5076           9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS   87 (288)
Q Consensus         9 ~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~   87 (288)
                      ..+|||||.|+|++||++|+...+ |+||||+|.+..|.|+|||+.+++|+||+|...+.+     |++. +..|+||.+
T Consensus         2 ~~~PWy~g~isR~~Ae~lL~~~~~-G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~   75 (101)
T d1k9aa2           2 SLMPWFHGKITREQAERLLYPPET-GLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASK-----LSIDEEVYFENLMQ   75 (101)
T ss_dssp             ESCTTBCTTCCHHHHHHHTCSCCT-TEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETTE-----EESSSSSCBSSHHH
T ss_pred             CcCCccCCCCCHHHHHHHHcCCCC-CCEEEeccCCCCCCEEEEEEeCCccEEEEEEEcCCC-----ceecCCcccCCHHH
Confidence            357999999999999999987655 999999999889999999999999999999987654     7776 678999999


Q ss_pred             hhhhheecccC-CCcccccccc
Q psy5076          88 LLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        88 LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ||+||++++.+ ++.|..||++
T Consensus        76 LV~~y~~~~~gl~~~L~~P~~~   97 (101)
T d1k9aa2          76 LVEHYTTDADGLCTRLIKPKVM   97 (101)
T ss_dssp             HHHHHHHCCTTSSSCCCEECCC
T ss_pred             HHHHHhhCCCCCceeCCccccC
Confidence            99999999877 7889999986

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.2e-26  Score=167.65  Aligned_cols=97  Identities=24%  Similarity=0.483  Sum_probs=84.0

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC------Ccc
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKT   81 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~------~~~   81 (288)
                      +|+++||||.|+|++||++|++...+|+||||+|.+.+|.|+||++.+++++||+|.+...+   . |.+.      +..
T Consensus         1 le~~pwyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~---~-~~~~~~~~~~~~~   76 (104)
T d1d4ta_           1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETG---S-WSAETAPGVHKRY   76 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS---C-EEECBCTTSCCCC
T ss_pred             CCcCCccccCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEecCCCceEEEEEEcCCC---c-EEEeeccCCCCcc
Confidence            47789999999999999999765556999999999989999999999999999999987665   3 4432      467


Q ss_pred             cCChhhhhhhheecccC-CCcccccccc
Q psy5076          82 FSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      |+||.+||+||++++.+ .+.|+.||++
T Consensus        77 F~sl~~Li~~y~~~~~gl~~~L~~P~~r  104 (104)
T d1d4ta_          77 FRKIKNLISAFQKPDQGIVIPLQYPVEK  104 (104)
T ss_dssp             BSSHHHHHHHHTSSSSSSSSCCCEECCC
T ss_pred             cCCHHHHHHHHhhCCCCCcEeCCccccC
Confidence            99999999999998877 6789999875

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9e-26  Score=172.56  Aligned_cols=100  Identities=29%  Similarity=0.489  Sum_probs=88.0

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccC
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (288)
                      |+.+.+|||||.|+|++||++|+. ...+|+||||+|++..|.|+|||+.+++|+||+|.+...+   . |++. +..|+
T Consensus         1 d~~~~~pWy~g~i~R~~Ae~~L~~~g~~~G~FLVR~S~~~~g~yvLSv~~~~~v~H~~I~~~~~g---~-~~l~~~~~F~   76 (130)
T d2oq1a1           1 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNG---T-YAIAGGKAHC   76 (130)
T ss_dssp             CTTTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS---C-EEETTSCCBS
T ss_pred             CCccCCCCccCCCCHHHHHHHHHhcCCCCceEEEEecCCCCccEEEEEeeCCceEEEEEEEcCCC---c-eeccCCCCcC
Confidence            567778999999999999999985 3567999999999989999999999999999999876554   3 8886 46899


Q ss_pred             ChhhhhhhheecccC-CCcccccccce
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATKT  109 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~~  109 (288)
                      ||.+||+||+.++.+ ++.|+.||+++
T Consensus        77 sl~~Lv~~Y~~~~~gL~~~L~~P~~r~  103 (130)
T d2oq1a1          77 GPAELCEFYSRDPDGLPCNLRKPCNRP  103 (130)
T ss_dssp             SHHHHHHHHHHCCTTSSSCCCSBCCCC
T ss_pred             CHHHHHHHHhhCCCCCCccCCccCCCC
Confidence            999999999998876 78899999873

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.5e-26  Score=167.06  Aligned_cols=96  Identities=28%  Similarity=0.568  Sum_probs=82.8

Q ss_pred             CCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCC-----eEEEEEEEeecCCCcceEEeeC-Cc
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENN-----KVSHYIINKITNTEQQTCYKIG-DK   80 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~-----~v~h~~I~~~~~~~~~~~~~~~-~~   80 (288)
                      ++.++||||.|+|++||++|+. ..++|+||||.|.+.+|.|+||++..+     .|+||+|...+.+   . |++. +.
T Consensus         1 le~~pWy~g~isR~eAe~~L~~~~~~~GtFLVR~S~~~~g~~~lsv~~~~~~~~~~v~h~~i~~~~~~---~-~~~~~~~   76 (105)
T d1lkka_           1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG---G-FYISPRI   76 (105)
T ss_dssp             CCCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS---C-EESSTTS
T ss_pred             CccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEccCCCCCCEEEEEEEcccCCCccEEEEEEEEcCCC---C-EEecCCc
Confidence            5788999999999999999965 356699999999998999999999743     4899999987654   4 7776 56


Q ss_pred             ccCChhhhhhhheecccC-CCccccccc
Q psy5076          81 TFSDLPSLLAFYKVHYLD-TSPLIKPAT  107 (288)
Q Consensus        81 ~F~sl~~LV~~y~~~~l~-~~~l~~p~~  107 (288)
                      .|+||.+||+||+.++++ .+.|+.||+
T Consensus        77 ~F~sl~~LV~~y~~~~~gL~~~L~~Pcp  104 (105)
T d1lkka_          77 TFPGLHELVRHYTNASDGLCTRLSRPCQ  104 (105)
T ss_dssp             CBSSHHHHHHHHHHCCTTSSSCCCSBCC
T ss_pred             ccCCHHHHHHHHhhCCCCCCccCCCcCC
Confidence            899999999999999987 788999987

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=171.81  Aligned_cols=97  Identities=29%  Similarity=0.496  Sum_probs=85.3

Q ss_pred             CCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCCh
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL   85 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl   85 (288)
                      .+.+|||||.|+|++||.+|... ..+|+||||+|++..|.|+|||+.+++|+||+|.+...+   . |++. +..|+||
T Consensus         2 ~~~~PWyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g---~-~~i~~~~~F~sl   77 (129)
T d1a81a1           2 ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNG---T-YAIAGGRTHASP   77 (129)
T ss_dssp             TTSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS---C-EEETTSCCBSSH
T ss_pred             CCCCCcccCCCCHHHHHHHHHhcCCCCccEEEEccCCCCcceEEEeeecccceEEEEEEcCCC---C-eeecCCcccCCH
Confidence            35579999999999999999754 466999999999989999999999999999999987654   4 7886 5789999


Q ss_pred             hhhhhhheecccC-CCcccccccc
Q psy5076          86 PSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        86 ~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      .+||+||+.++.+ +|.|..||++
T Consensus        78 ~eLV~~Y~~~~~gl~~~L~~P~~~  101 (129)
T d1a81a1          78 ADLCHYHSQESDGLVCLLKKPFNR  101 (129)
T ss_dssp             HHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHHHHhhCCCCCcccCCCCCCC
Confidence            9999999999877 7889999976

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.4e-26  Score=171.73  Aligned_cols=97  Identities=29%  Similarity=0.489  Sum_probs=85.3

Q ss_pred             CCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCC
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSD   84 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~s   84 (288)
                      .|+.++||||.|+|++||.+|+. ...+|+||||.|++ .|.|+|||+.+++|+||+|.+...+   . |++. +..|+|
T Consensus        25 ~~e~~pWyhg~isR~eAe~lL~~~~~~dGtFLVR~S~~-~g~yvLSv~~~~~v~H~~I~~~~~g---~-~~l~~~~~F~s   99 (124)
T d2oq1a2          25 AHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLISQDKAG---K-YCIPEGTKFDT   99 (124)
T ss_dssp             GGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEECSS-TTEEEEEEEETTEEEEEEEEECTTS---C-EESTTSCCBSS
T ss_pred             cccCCCCccCCCCHHHHHHHHhhcCCCCceEEeEecCC-CCCEEEEeecCCceEEEEEEECCCC---C-EEeCCCcccCC
Confidence            57888999999999999999986 45679999999976 7899999999999999999987654   4 7776 578999


Q ss_pred             hhhhhhhheecccC-CCcccccccc
Q psy5076          85 LPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        85 l~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      |.+||+||+.++.+ .|.|+.|||.
T Consensus       100 l~~LV~~y~~~~~gL~~~L~~PcP~  124 (124)
T d2oq1a2         100 LWQLVEYLKLKADGLIYCLKEACPN  124 (124)
T ss_dssp             HHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHHHHHhhCCCCCcccCCCcCcC
Confidence            99999999998876 7889999973

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=168.34  Aligned_cols=102  Identities=26%  Similarity=0.429  Sum_probs=86.4

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC--ccc
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--KTF   82 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~--~~F   82 (288)
                      ..|+.++||||.|+|++||++|.+ ..+||+||||+|.+.+|.|+|||+.+++|+||+|...+.+. ...|.+.+  ..|
T Consensus         5 ~~h~~~~Wy~g~isR~~Ae~lL~~~g~~dG~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~-~~~~~~~~~~~~F   83 (113)
T d2qmsa1           5 AIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEG-RLYFSMDDGQTRF   83 (113)
T ss_dssp             HSTTCCTTEEEEBCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEEESSS-CEEEESSTTSSCB
T ss_pred             hhhcCCCccCCCCCHHHHHHHHhccCCCCccEEEEeccCCCCCEEEEEEeCCeEEEEEEEEeCCCC-eEEEEecCCCccc
Confidence            358899999999999999999985 45669999999998889999999999999999998765431 22255553  579


Q ss_pred             CChhhhhhhheecccC-CCcccccccc
Q psy5076          83 SDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        83 ~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      +||.+||+||+.++++ .|.|..||++
T Consensus        84 ~sl~~LI~~y~~~~~~L~~~L~~pc~r  110 (113)
T d2qmsa1          84 TDLLQLVEFHQLNRGILPCLLRHCCTR  110 (113)
T ss_dssp             SSHHHHHHHHTTCCTTSSSCCCEECCS
T ss_pred             CCHHHHHHHhccCCCCCccccCCCCcC
Confidence            9999999999999877 6889999987

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.3e-25  Score=165.33  Aligned_cols=94  Identities=30%  Similarity=0.501  Sum_probs=80.9

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC------CcccCC
Q psy5076          11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKTFSD   84 (288)
Q Consensus        11 ~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~------~~~F~s   84 (288)
                      +|||||.|+|++||.+|.....+|+||||+|.+.+|.|+|||+.+++|+||+|.+...+   . |++.      ...|+|
T Consensus         3 ~PWy~g~isR~~AE~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g---~-~~~~~~~~~~~~~F~s   78 (103)
T d1i3za_           3 LPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG---Y-YRIETDAHTPRTIFPN   78 (103)
T ss_dssp             CTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTS---C-EEECBCTTSCCCEESS
T ss_pred             CCcccCCCCHHHHHHHHHhCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEeEEcCCC---c-EEEeccCCcCccccCC
Confidence            58999999999999999765567999999999989999999999999999999876554   3 6664      246999


Q ss_pred             hhhhhhhheecccC-CCcccccccc
Q psy5076          85 LPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        85 l~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      |.+||+||++++.+ .+.|+.||.+
T Consensus        79 l~~LV~~y~~~~~gl~~~L~~P~~R  103 (103)
T d1i3za_          79 LQELVSKYGKPGQGLVVHLSNPIMR  103 (103)
T ss_dssp             SHHHHHHTTSSSSSSSSCCCEECC-
T ss_pred             HHHHHHHhhhCCCCCeEeCCccccC
Confidence            99999999998876 6788889864

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-25  Score=162.40  Aligned_cols=85  Identities=27%  Similarity=0.551  Sum_probs=77.2

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhhhh
Q psy5076          10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL   89 (288)
Q Consensus        10 ~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~LV   89 (288)
                      ++|||||.|+|++||++|....++|+||||+|.+.+|.|+||++.+++|+||+|.+...+   . |.+++..|+||.+||
T Consensus         2 s~pWy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g---~-~~~~~~~F~sl~~LV   77 (96)
T d1jyra_           2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG---K-YFLWVVKFNSLNELV   77 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS---C-EESSSCEESSHHHHH
T ss_pred             CCCccCCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCceEEEEEEECCCC---e-EEeCCccCCCHHHHH
Confidence            579999999999999999766567999999999889999999999999999999987654   4 888888999999999


Q ss_pred             hhheecccC
Q psy5076          90 AFYKVHYLD   98 (288)
Q Consensus        90 ~~y~~~~l~   98 (288)
                      +||+++++.
T Consensus        78 ~~y~~~~l~   86 (96)
T d1jyra_          78 DYHRSTSVS   86 (96)
T ss_dssp             HHTTSSCSC
T ss_pred             HHHhhCCCC
Confidence            999999885

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-25  Score=165.77  Aligned_cols=97  Identities=35%  Similarity=0.619  Sum_probs=83.5

Q ss_pred             CCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeC-----CeEEEEEEEeecCCCcceEEeeC-C
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKEN-----NKVSHYIINKITNTEQQTCYKIG-D   79 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~-----~~v~h~~I~~~~~~~~~~~~~~~-~   79 (288)
                      ++++++||||.|+|++||++|+. ...+|+||||+|.+..|.|+||++..     ..|+||+|.....+   . |++. +
T Consensus         1 ~l~~~~Wy~g~i~R~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~i~h~~i~~~~~g---~-~~~~~~   76 (106)
T d1o48a_           1 SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSG---G-FYITSR   76 (106)
T ss_dssp             CGGGSTTEEESCCHHHHHHHHCCTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS---C-EESSTT
T ss_pred             CcccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEcccCCCCCEEEEEEecccCcccceEEEEEEEecCC---C-EEEcCC
Confidence            46789999999999999999975 45679999999998899999999864     36889999887654   4 7775 5


Q ss_pred             cccCChhhhhhhheecccC-CCccccccc
Q psy5076          80 KTFSDLPSLLAFYKVHYLD-TSPLIKPAT  107 (288)
Q Consensus        80 ~~F~sl~~LV~~y~~~~l~-~~~l~~p~~  107 (288)
                      ..|+||.+||+||+.++++ ++.|+.|||
T Consensus        77 ~~F~sl~eLV~~y~~~~~gL~~~L~~pcP  105 (106)
T d1o48a_          77 TQFNSLQQLVAYYSKHADGLCHRLTTVCP  105 (106)
T ss_dssp             SEESSHHHHHHHHTTCCTTSSSCCCSBCC
T ss_pred             eeECCHHHHHHHHhhCCCCCCccCCCcCC
Confidence            6899999999999999887 788999987

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-25  Score=166.06  Aligned_cols=95  Identities=27%  Similarity=0.465  Sum_probs=82.0

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChhh
Q psy5076           9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS   87 (288)
Q Consensus         9 ~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~   87 (288)
                      ++++||||.|+|++||.+|+..+.+|+||||+|.+..|.|+|||+.+++|+||+|...+++     |++. +..|+||.+
T Consensus         1 ~~~~Wy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~   75 (109)
T d2shpa2           1 KSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDY-----YDLYGGEKFATLAE   75 (109)
T ss_dssp             CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSSSC-----EEETTSCEESSHHH
T ss_pred             CCCccccCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCcEEEEEEEEcCCe-----EEEcCCcccCCHHH
Confidence            4689999999999999999765556999999999889999999999999999999876654     7664 679999999


Q ss_pred             hhhhheecccC-------CCcccccccc
Q psy5076          88 LLAFYKVHYLD-------TSPLIKPATK  108 (288)
Q Consensus        88 LV~~y~~~~l~-------~~~l~~p~~~  108 (288)
                      ||+||+.+++.       .+.|+.|++.
T Consensus        76 LV~~y~~~~~~~~~~~~~~~~L~~P~~~  103 (109)
T d2shpa2          76 LVQYYMEHHGQLKEKNGDVIELKYPLNC  103 (109)
T ss_dssp             HHHHHHTCTTCSBSSSSCBCCCCEECCC
T ss_pred             HHHHHHHCCCCcccCCCCeeeccccCCC
Confidence            99999987753       2568888765

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.5e-25  Score=169.11  Aligned_cols=98  Identities=33%  Similarity=0.589  Sum_probs=85.1

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccC
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (288)
                      .+|+.+|||||.|+|++||++|.. ...+|+||||.|+. .|.|+|||+.+++|+||+|.....+   . |++. +..|+
T Consensus        24 ~~he~~pWyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~-~~~yvLSv~~~~~v~H~~I~~~~~g---~-~~~~~~~~F~   98 (125)
T d1a81a2          24 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDN-NGSYALCLLHEGKVLHYRIDKDKTG---K-LSIPEGKKFD   98 (125)
T ss_dssp             TSGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEECSS-SSCEEEEEEETTEEEEEEEEECTTS---C-EECTTSCCBS
T ss_pred             cccccCCccCCCCCHHHHHHHHHhcCCCCceEEEEecCC-CCCEEEEeeccccceeEeeeEcCCC---c-EeccCCcccC
Confidence            467889999999999999999964 45669999999875 6889999999999999999987654   4 7776 57899


Q ss_pred             ChhhhhhhheecccC-CCcccccccc
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ||.+||+||+.++.+ .|.|+.||++
T Consensus        99 sL~~LI~~y~~~~~gL~~~L~~P~~k  124 (125)
T d1a81a2          99 TLWQLVEHYSYKADGLLRVLTVPCQK  124 (125)
T ss_dssp             CHHHHHHHHTTCCTTSSSCCCCBCCC
T ss_pred             CHHHHHHHHhhCCCCCCccCCeeCCC
Confidence            999999999998866 6889999986

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.5e-25  Score=168.19  Aligned_cols=102  Identities=28%  Similarity=0.534  Sum_probs=88.2

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEee----CCeEEEEEEEeecCCCcceEEee
Q psy5076           3 GTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE----NNKVSHYIINKITNTEQQTCYKI   77 (288)
Q Consensus         3 ~~~~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~----~~~v~h~~I~~~~~~~~~~~~~~   77 (288)
                      ...++++.++||||.|+|++||++|.. ..++|+||||.|.+.+|.|+|||+.    ++.|+||+|.+.+.+   . |++
T Consensus         4 ap~~~l~~e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~v~H~~i~~~~~g---~-~~l   79 (114)
T d1blja_           4 APVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNG---G-YYI   79 (114)
T ss_dssp             CSSCCSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTT---E-EEE
T ss_pred             CCcCccccCCCcCCCCCHHHHHHHHHhcCCCCceEEEeccCCCCCCeEEEEEeeccCCCEEEEEEEEEcCCC---C-EEe
Confidence            356788999999999999999998864 4567999999999889999999985    356999999987665   4 777


Q ss_pred             C-CcccCChhhhhhhheecccC-CCcccccccc
Q psy5076          78 G-DKTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        78 ~-~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      . +..|+||.+||+||+.++++ +++|+.||++
T Consensus        80 ~~~~~F~sl~eLV~~y~~~~~gL~~~L~~PC~~  112 (114)
T d1blja_          80 SPRITFPTLQALVQHYSKKGDGLCQKLTLPCVN  112 (114)
T ss_dssp             ETTEEESSHHHHHHHHHHCCSSSSSCCCCCSCC
T ss_pred             cCCceECCHHHHHHHHhhCCCCCCccCCccCcC
Confidence            5 56899999999999999987 7899999986

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-25  Score=164.80  Aligned_cols=95  Identities=27%  Similarity=0.485  Sum_probs=82.5

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCCh
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDL   85 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl   85 (288)
                      +.++.++||||.|+|++||.+|+   .+|+||||.|++.+|.|+|||+.++.|+||+|...++.     |.+.+..|+||
T Consensus         2 ~~l~~~pWyhG~i~R~~Ae~lL~---~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~~~-----~~~~~~~F~sl   73 (104)
T d1mila_           2 SQLRGEPWFHGKLSRREAEALLQ---LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGV-----VRTKDHRFESV   73 (104)
T ss_dssp             CSTTTCTTBCSSCCHHHHHTTCC---STTEEEEEECCSSCSSEEEEEEETTEEEEEEEBCTTSS-----EECSSCEESSH
T ss_pred             cccccCCCcCCCCCHHHHHHHHh---cCCcEEEEecCCCCCCEEEEEEEccccceEEEEeCCCE-----EEeCCeeECCH
Confidence            35788999999999999999995   35999999999989999999999999999999765443     88888899999


Q ss_pred             hhhhhhheecccC------CCcccccccc
Q psy5076          86 PSLLAFYKVHYLD------TSPLIKPATK  108 (288)
Q Consensus        86 ~~LV~~y~~~~l~------~~~l~~p~~~  108 (288)
                      .+||+||+.+++.      ...|++|+.+
T Consensus        74 ~~LV~~y~~~~~~~~~~~~~~~L~~Pi~R  102 (104)
T d1mila_          74 SHLISYHMDNHLPIISAGSELCLQQPVER  102 (104)
T ss_dssp             HHHHHHHHHHTCCEEETTEEECCCEECCC
T ss_pred             HHHHHHHhhCCCCcccCCcceEeCCCcCC
Confidence            9999999998875      2457778765

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.7e-25  Score=163.36  Aligned_cols=96  Identities=35%  Similarity=0.666  Sum_probs=82.5

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEee-----CCeEEEEEEEeecCCCcceEEeeC-
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG-   78 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~-   78 (288)
                      |++++++||||.|+|++||++|.. ..++|+||||+|.+.+|.|+||++.     ++.|+||+|...+.+   . |++. 
T Consensus         1 ~~l~~~~Wy~g~i~R~eAe~~L~~~g~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~h~~i~~~~~g---~-~~~~~   76 (104)
T d1g83a2           1 DSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNG---G-YYITT   76 (104)
T ss_dssp             TSGGGSSSBCTTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECSSSCEEEEEEEEEECTTS---C-EEETT
T ss_pred             CccccCCCcCCCCCHHHHHHHHHhcCCCCCcEEEeccCCCCCCeEEEEEEeecCcCCeEEEEEEEEcCCC---C-EEecC
Confidence            567889999999999999999975 4567999999999989999999996     457999999987654   3 6665 


Q ss_pred             CcccCChhhhhhhheecccC-CCccccc
Q psy5076          79 DKTFSDLPSLLAFYKVHYLD-TSPLIKP  105 (288)
Q Consensus        79 ~~~F~sl~~LV~~y~~~~l~-~~~l~~p  105 (288)
                      +..|+||.+||+||+.++++ +|.|+.|
T Consensus        77 ~~~F~sl~~LV~~y~~~~~gL~~~L~~P  104 (104)
T d1g83a2          77 RAQFETLQQLVQHYSERAAGLSSRLVVP  104 (104)
T ss_dssp             TEEESSHHHHHHHHHHCCTTSSSCCCCC
T ss_pred             CcccCCHHHHHHHHhhCCCCCceeCCCC
Confidence            57899999999999999877 6788776

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.6e-25  Score=162.07  Aligned_cols=94  Identities=33%  Similarity=0.587  Sum_probs=81.8

Q ss_pred             CCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEee-----CCeEEEEEEEeecCCCcceEEeeC-CcccC
Q psy5076          11 NSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (288)
Q Consensus        11 ~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (288)
                      |+||||.|+|++||++|.. ..++|+||||+|.+.+|.|+|||+.     ++.|+||+|.....+   . |++. +..|+
T Consensus         1 e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~H~~i~~~~~g---~-~~~~~~~~F~   76 (103)
T d1qcfa2           1 EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNG---G-FYISPRSTFS   76 (103)
T ss_dssp             STTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTS---C-EESSSSSCBS
T ss_pred             CCccCCCCCHHHHHHHHhhcCCCCCcEEEEccCCCCCCeEEEEEecCCCcCceEEEEEEEEcCCC---c-eeecCCcccC
Confidence            5899999999999999864 4567999999999999999999985     468999999987655   4 6665 57899


Q ss_pred             ChhhhhhhheecccC-CCcccccccc
Q psy5076          84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (288)
Q Consensus        84 sl~~LV~~y~~~~l~-~~~l~~p~~~  108 (288)
                      ||.+||+||+.++++ .+.|+.||++
T Consensus        77 sl~~LV~~y~~~~~gL~~~L~~PC~~  102 (103)
T d1qcfa2          77 TLQELVDHYKKGNDGLCQKLSVPCMS  102 (103)
T ss_dssp             SHHHHHHHHTSSCTTSSSCCCSBCCC
T ss_pred             CHHHHHHHHhhCCCCCCccCCccCCC
Confidence            999999999999877 7899999986

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.5e-25  Score=163.79  Aligned_cols=99  Identities=26%  Similarity=0.509  Sum_probs=82.8

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeC------CeEEEEEEEeecCCCcceEEeeC-
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN------NKVSHYIINKITNTEQQTCYKIG-   78 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~------~~v~h~~I~~~~~~~~~~~~~~~-   78 (288)
                      ++++.++||||.|+|++||++|+....+|+||||+|++ +|.|+|||+..      ..|+||+|.....+ ... |++. 
T Consensus         1 ~~l~~~~Wy~g~isR~eAe~lL~~~~~~G~FLVR~S~~-~g~y~LSv~~~~~~~~~~~i~h~~I~~~~~~-~~~-~~~~~   77 (108)
T d1luia_           1 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHIKETNDS-PKR-YYVAE   77 (108)
T ss_dssp             CCCTTSTTBCTTCCHHHHHHHHHHHCCTTEEEEEECCT-TTCEEEEEECSCCTTTCSCEEEEECEECCCS-SCC-EESSS
T ss_pred             CccccCCCcCCCCCHHHHHHHHHhcCCCCeEEEEecCC-CCCEEEEEEecCCcccCCceeEEEEEEecCC-Cce-eecCC
Confidence            46788999999999999999997644569999999976 89999999963      46899999876554 223 5555 


Q ss_pred             CcccCChhhhhhhheecccC-CCccccccc
Q psy5076          79 DKTFSDLPSLLAFYKVHYLD-TSPLIKPAT  107 (288)
Q Consensus        79 ~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~  107 (288)
                      +..|+||.+||+||++++++ .+.|++||+
T Consensus        78 ~~~F~sl~~LV~~y~~~~~~L~~~L~~Pv~  107 (108)
T d1luia_          78 KYVFDSIPLLIQYHQYNGGGLVTRLRYPVC  107 (108)
T ss_dssp             SCCBSSHHHHHHHHHTTCCSSSSSSSEECC
T ss_pred             CcccCCHHHHHHHHhhCCCCCccCCCCcCC
Confidence            57899999999999999877 788999986

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.3e-24  Score=157.91  Aligned_cols=86  Identities=21%  Similarity=0.531  Sum_probs=77.7

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhh
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPS   87 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~   87 (288)
                      ++.++||||.|+|++||++|+..+ +|+||||.|.+.+|.|+|||+.+++|+||+|.+...+   . |.+++..|+||.+
T Consensus         3 ~~~~~Wy~g~isR~~Ae~lL~~~~-~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g---~-~~~~~~~F~sl~~   77 (97)
T d1r1qa_           3 IEFPEWFHEGLSRHQAENLLMGKD-IGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKG---N-YFLWTEKFPSLNK   77 (97)
T ss_dssp             CSCCTTBCTTCCHHHHHHHHHTSC-TTCEEEEECSSSTTCEEEEEECSSSEEEEECEECTTC---C-EESSSCCBSSHHH
T ss_pred             cccCCccCCCCCHHHHHHHHhcCC-CCCEEEeecCCCCCCEEEEEEecCCeEEEEEEEcCCC---e-EEeCCCCcCCHHH
Confidence            567899999999999999998755 5999999999889999999999999999999987665   4 7777889999999


Q ss_pred             hhhhheecccC
Q psy5076          88 LLAFYKVHYLD   98 (288)
Q Consensus        88 LV~~y~~~~l~   98 (288)
                      ||+||+++++.
T Consensus        78 LV~~y~~~~l~   88 (97)
T d1r1qa_          78 LVDYYRTTSIS   88 (97)
T ss_dssp             HHHHTTTSCSC
T ss_pred             HHHHHccCCcC
Confidence            99999999875

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.3e-24  Score=157.11  Aligned_cols=99  Identities=23%  Similarity=0.522  Sum_probs=85.4

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC--Ccc
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKT   81 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~~   81 (288)
                      +|++.-.++||||.|+|++|+++|+.+++ |+||||.|.+..+ |+|+++.++.++||+|.....+   . |++.  ...
T Consensus         2 ~~~~~~~~pWy~g~isR~eAe~lL~~~~~-G~FLvR~S~~~~~-y~Lsv~~~~~~~h~~I~~~~~g---~-~~~~~~~~~   75 (106)
T d2cs0a1           2 QLAQDGVPEWFHGAISREDAENLLESQPL-GSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDG---T-FMIPGEKVA   75 (106)
T ss_dssp             CCCSSSCCSSBCSSCCHHHHHHHHHTSCT-TCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTS---C-EECTTCSCC
T ss_pred             CccCCCCCCCccCCCCHHHHHHHHcCCCC-CcEEEEecCCCCC-EEEEEEecCCceeEEEEEcCCC---C-EEEecCCcc
Confidence            56777778999999999999999987655 9999999987555 9999999999999999987655   3 6664  357


Q ss_pred             cCChhhhhhhheecccC--CCcccccccc
Q psy5076          82 FSDLPSLLAFYKVHYLD--TSPLIKPATK  108 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~--~~~l~~p~~~  108 (288)
                      |.||.+||+||+++++.  ++.|+.||++
T Consensus        76 F~sl~eLV~~y~~~~~~~~~~~L~~P~~~  104 (106)
T d2cs0a1          76 HTSLDALVTFHQQKPIEPRRELLTQPCRQ  104 (106)
T ss_dssp             BSSHHHHHHHHTTSCCSSCCCCCCSBCCC
T ss_pred             CCCHHHHHHHHHHCCCCCccCcccCcCCC
Confidence            99999999999999885  6789999987

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-24  Score=162.44  Aligned_cols=97  Identities=23%  Similarity=0.338  Sum_probs=82.7

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC-----c
Q psy5076           6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-----K   80 (288)
Q Consensus         6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-----~   80 (288)
                      ..++.++||||.|+|++||++|+.+++ |+||||+|++..+.|+||++.++.++||+|...+++     |.+..     .
T Consensus         6 ~~l~~~~Wy~g~isR~~Ae~lL~~~~~-GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~-----~~l~~~~~~~~   79 (112)
T d2izva2           6 LQINNNPCYWGVMDKYAAEALLEGKPE-GTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHN-----FSFDAHDPCVF   79 (112)
T ss_dssp             HHHHHCTTEEEECCHHHHHHHHTTCCT-TEEEEEECSSTTCSEEEEEEETTEEEEEECEEETTE-----EESCTTCTTSC
T ss_pred             HHhccCCCcCCCCCHHHHHHHHccCCC-CcEEEeecCCCCCCeEEEEEecCCceEEEEEEeCCe-----EEEeecccCcc
Confidence            345678999999999999999986654 999999999889999999999999999999987654     77752     2


Q ss_pred             ccCChhhhhhhheecccC---CCcccccccc
Q psy5076          81 TFSDLPSLLAFYKVHYLD---TSPLIKPATK  108 (288)
Q Consensus        81 ~F~sl~~LV~~y~~~~l~---~~~l~~p~~~  108 (288)
                      .|+||.+||+||+.+++.   ...|+.|+++
T Consensus        80 ~F~sl~~LV~~Y~~~~~~~~~~~llt~P~~r  110 (112)
T d2izva2          80 HSPDITGLLEHYKDPSACMFFEPLLSTPLIR  110 (112)
T ss_dssp             CBSSHHHHHHHTCCGGGCCTTSCCCCEECCC
T ss_pred             cCCCHHHHHHHHhcccccccCccccCCCCCC
Confidence            699999999999998875   3457788876

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.1e-24  Score=157.80  Aligned_cols=96  Identities=53%  Similarity=0.955  Sum_probs=81.4

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCC-------------cceEEeeC
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-------------QQTCYKIG   78 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~-------------~~~~~~~~   78 (288)
                      .||||.|+|++||++|+.+++ |+||||+|.+..+.|+||++.+++|+||+|.+...+.             ....|.++
T Consensus         1 sWy~g~isR~~Ae~lL~~~~~-G~FLVR~S~~~~~~~~LS~~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (109)
T d2eyva1           1 SWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIG   79 (109)
T ss_dssp             TSCCBCCCHHHHHHHCSSCST-TCEEEECCCSSSSCEEEEEEETTEEEEEEEECCCCSSCCCSSSSCCCCSCCCCCEEET
T ss_pred             CCCCCCCCHHHHHHHhcCCCC-CeEEeeecCCCCCCEEEEEEECCEEEEEEEEEcCCcceeeccccccccccccceEEeC
Confidence            599999999999999976654 9999999998899999999999999999999875431             00114445


Q ss_pred             CcccCChhhhhhhheecccCCCcccccccc
Q psy5076          79 DKTFSDLPSLLAFYKVHYLDTSPLIKPATK  108 (288)
Q Consensus        79 ~~~F~sl~~LV~~y~~~~l~~~~l~~p~~~  108 (288)
                      +..|+||.+||+||+.+++..+.|..||++
T Consensus        80 ~~~F~sl~~LV~~y~~~~l~~~~L~~P~~r  109 (109)
T d2eyva1          80 DQEFDSLPALLEFYKIHYLDTTTLIEPVSR  109 (109)
T ss_dssp             TEEESSHHHHHHHSSSSCSSSSCCCSBCCS
T ss_pred             CeeeCCHHHHHHHHhhCcCCCCccCCcCCC
Confidence            668999999999999999988889999874

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=5.6e-24  Score=157.64  Aligned_cols=98  Identities=30%  Similarity=0.472  Sum_probs=79.3

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-Ccc
Q psy5076           3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKT   81 (288)
Q Consensus         3 ~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~   81 (288)
                      +++..++.++||||.|+|++|+.+|+..++ |+||||.|+. .+.|+||++.+++|+||+|.....+   . |.+. ...
T Consensus         1 e~~p~~~~~~Wy~g~isR~eAe~lL~~~~~-G~FLVR~S~~-~~~y~Lsv~~~~~v~H~~I~~~~~g---~-~~~~~~~~   74 (107)
T d1qada_           1 EDLPHHDEKTWNVGSSNRNKAENLLRGKRD-GTFLVRESSK-QGCYACSVVVDGEVKHCVINKTATG---Y-GFAEPYNL   74 (107)
T ss_dssp             CCCGGGSGGGTEEEECCHHHHHHHHTTCCT-TEEEEEEC----CCEEEEEEETTEEEEEEEEEETTE---E-ESSTTCCC
T ss_pred             CCCCccCCCcccCCCCCHHHHHHHHcCCCC-CcEEEEecCC-CCCEEEEEEecCCeEEEEEEECCCC---e-EEcCCCCc
Confidence            355668889999999999999999976654 9999999964 7899999999999999999987765   2 4444 468


Q ss_pred             cCChhhhhhhheecccC------CCcccccc
Q psy5076          82 FSDLPSLLAFYKVHYLD------TSPLIKPA  106 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~------~~~l~~p~  106 (288)
                      |+||.+||+||+.+++.      .+.|+.|+
T Consensus        75 F~sl~~LI~~Y~~~~l~~~~~~l~~~L~~Pv  105 (107)
T d1qada_          75 YSSLKELVLHYQHTSLVQHNDSLNVTLAYPV  105 (107)
T ss_dssp             BSSHHHHHHHHHHSCGGGTCTTCCCCCCEET
T ss_pred             cCCHHHHHHHHHhCccccccCCCceEccccc
Confidence            99999999999998864      34566664

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=5e-24  Score=151.62  Aligned_cols=83  Identities=20%  Similarity=0.411  Sum_probs=68.8

Q ss_pred             CCCCCccccCCCHHHHHHHHcCC--CCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCCh
Q psy5076           8 HDRNSWYFGMMTRQEAQAILLSE--KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDL   85 (288)
Q Consensus         8 ~~~~~Wy~g~isr~~ae~lL~~~--~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl   85 (288)
                      ++.+|||||.|+|++||.+|+..  ..||+||||+|++..|.|+|||+.+++|+||+|.+...+   . |.+++..|+||
T Consensus         2 l~~~pWyhg~isR~~Ae~lL~~~~~~~dG~FLvR~S~~~~g~~~Lsv~~~~~v~h~~I~~~~~~---~-~~~~~~~F~sl   77 (86)
T d1rpya_           2 LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHG---Q-CHVQHLWFQSV   77 (86)
T ss_dssp             GGGSTTBCTTCCHHHHHHHHHTTGGGGTTCEEEEECSSSTTCEEEEEEETTEEEEEEC----CC---C-HHHHHHHHHHH
T ss_pred             CccCcccCCCCCHHHHHHHHHhCCCCCCceEEEEecCCCCCcEEEEEEECCceEEEEEEEcCCc---e-EEeCCCeeCCH
Confidence            34579999999999999999864  356999999999889999999999999999999987665   2 44457799999


Q ss_pred             hhhhhhhee
Q psy5076          86 PSLLAFYKV   94 (288)
Q Consensus        86 ~~LV~~y~~   94 (288)
                      .+||+||++
T Consensus        78 ~~LV~~y~t   86 (86)
T d1rpya_          78 FDMLRHFHT   86 (86)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHhhcC
Confidence            999999974

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.3e-23  Score=156.86  Aligned_cols=99  Identities=26%  Similarity=0.477  Sum_probs=83.1

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCC-CCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-Ccc
Q psy5076           4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI-LGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKT   81 (288)
Q Consensus         4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~-~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~   81 (288)
                      +...++.++||||.|+|++||++|+..+ +|+||||.|++. .+.|+|+++.++.++||+|...++.     |++. ...
T Consensus         4 ~~~~l~~~~WyhG~isR~eAe~lL~~~~-~G~FLVR~S~~~~~~~~~ls~~~~~~~~H~~I~~~~~~-----~~~~~~~~   77 (111)
T d1fu6a_           4 NNMSLQDAEWYWGDISREEVNEKLRDTA-DGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGK-----YGFSDPLT   77 (111)
T ss_dssp             CCCCCSCCSSCCSSCCSHHHHHHSSSCS-SCCCCCBSSCCSSSCCSBCEEEETTEEEECCCCCTTTC-----CCTTTTSC
T ss_pred             CCCccCcCcCCCCCCCHHHHHHHhCcCC-CCEEEEEeccCCCCccEEEEEecCCceEEEEEEEcCCe-----EEECCCcc
Confidence            3446788999999999999999998665 599999998764 4679999999999999999876544     7776 568


Q ss_pred             cCChhhhhhhheecccC------CCcccccccc
Q psy5076          82 FSDLPSLLAFYKVHYLD------TSPLIKPATK  108 (288)
Q Consensus        82 F~sl~~LV~~y~~~~l~------~~~l~~p~~~  108 (288)
                      |+||.+||+||+++++.      .+.|+.||.+
T Consensus        78 F~sl~~LV~~y~~~~l~~~~~~l~~~L~~Pv~r  110 (111)
T d1fu6a_          78 FNSVVELINHYRNESLAQYNPKLDVKLLYPVSK  110 (111)
T ss_dssp             CCCTTHHHHHHHTTCSTTTCSSCCCCSCCCCCC
T ss_pred             cCCHHHHHHHHhhCcCCccCCCCccccCccccC
Confidence            99999999999998764      4578888875

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-22  Score=149.95  Aligned_cols=91  Identities=31%  Similarity=0.611  Sum_probs=76.9

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeC----------CeEEEEEEEeecCCCcceEEeeC-Cc
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN----------NKVSHYIINKITNTEQQTCYKIG-DK   80 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~----------~~v~h~~I~~~~~~~~~~~~~~~-~~   80 (288)
                      .||||.|+|++||++|+....+|+||||+|++.+|.|+|||+..          +.++||+|.....+     |.+. ..
T Consensus         1 rWyhG~i~R~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~~~~~~~~h~~i~~~~~~-----~~~~~~~   75 (108)
T d2shpa3           1 RWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELK-----YDVGGGE   75 (108)
T ss_dssp             TTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEETTE-----EESSSSC
T ss_pred             CCCcCCCCHHHHHHHHhhcCCCCeEEEEecCCCCCCeEEEEEecCccccccccccceeeEEEEeCCCc-----eEeCCCc
Confidence            49999999999999998655669999999999899999999974          45899999876654     7765 57


Q ss_pred             ccCChhhhhhhheecccC-----CCccccccc
Q psy5076          81 TFSDLPSLLAFYKVHYLD-----TSPLIKPAT  107 (288)
Q Consensus        81 ~F~sl~~LV~~y~~~~l~-----~~~l~~p~~  107 (288)
                      .|+||.+||+||+++++.     .+.|++||.
T Consensus        76 ~F~sl~~LV~~y~~~~l~~~~g~~~~L~~Pv~  107 (108)
T d2shpa3          76 RFDSLTDLVEHYKKNPMVETLGTVLQLKQPLN  107 (108)
T ss_dssp             CBSSHHHHHHHHHHSCCBCTTSCBCCCCEECC
T ss_pred             ccCCHHHHHHHHhhCCCCCCCCceEEcCCCCc
Confidence            999999999999998864     356777764

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-22  Score=148.40  Aligned_cols=84  Identities=25%  Similarity=0.439  Sum_probs=72.6

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC-------
Q psy5076           7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-------   79 (288)
Q Consensus         7 ~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-------   79 (288)
                      .++.++||||.|+|++||++|+..+ +|+||||.|...+|.|+||++.+++++||+|...+++     |.++.       
T Consensus        11 ~l~~~~Wy~g~i~R~~Ae~~L~~~~-~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~~~~~   84 (103)
T d2c9wa2          11 ELGQTGWYWGSMTVNEAKEKLKEAP-EGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGK-----FRLDSIICVKSK   84 (103)
T ss_dssp             HHHHTSCBCTTCCHHHHHHHHTTSC-TTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEETTE-----EEECTTTTTGGG
T ss_pred             HHhhCCCcCCCCCHHHHHHHhcCCC-CCceEEeccCCCCCCEEEEEEECCEEEEEEEEEcCCe-----EeeCCccccccC
Confidence            3556899999999999999998654 5999999999989999999999999999999987654     66642       


Q ss_pred             -cccCChhhhhhhheecc
Q psy5076          80 -KTFSDLPSLLAFYKVHY   96 (288)
Q Consensus        80 -~~F~sl~~LV~~y~~~~   96 (288)
                       ..|+||.+||+||+..+
T Consensus        85 ~~~F~sl~~LI~~y~~~s  102 (103)
T d2c9wa2          85 LKQFDSVVHLIDYYVQMC  102 (103)
T ss_dssp             CCCBSCHHHHHHHHHHHT
T ss_pred             CCccCCHHHHHHHHHhhC
Confidence             47999999999998753

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.3e-19  Score=139.24  Aligned_cols=78  Identities=23%  Similarity=0.437  Sum_probs=67.5

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCC
Q psy5076           5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSD   84 (288)
Q Consensus         5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~s   84 (288)
                      ..++..++||||.|+|++||+||..  .+|+||||+|.+..|.|+|||+.+++|+||+|.++ ++     |++.+..|+|
T Consensus        29 ~~~~~~~~wyhG~isR~eAe~lL~~--~dGsFLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~-g~-----~~~~~~~F~s  100 (141)
T d1xa6a2          29 NRPKYYGREFHGIISREQADELLGG--VEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHD-GK-----HFVGEKRFES  100 (141)
T ss_dssp             CSSCSSCSSEEEECCHHHHHHHHCS--CTTBEEEEECSSSTTCEEEEEEETTEEEECCCEES-SS-----EECSSSCCCC
T ss_pred             CCcccccceeeccCCHHHHHHHHcC--CCCeEEEEecCCCCCCEEEEEEECCEEEEEEEEEC-CC-----EEECCCeECC
Confidence            3456677899999999999999964  35999999999889999999999999999999863 33     7777789999


Q ss_pred             hhhhhh
Q psy5076          85 LPSLLA   90 (288)
Q Consensus        85 l~~LV~   90 (288)
                      |.+||.
T Consensus       101 l~eLV~  106 (141)
T d1xa6a2         101 IHDLVT  106 (141)
T ss_dssp             SSHHHH
T ss_pred             HHHHHh
Confidence            999885

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.7e-19  Score=129.05  Aligned_cols=89  Identities=22%  Similarity=0.325  Sum_probs=70.9

Q ss_pred             CCCcEEEEeCCCeEecccCCcccccccCCCCCCCCCCCCCCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCC
Q psy5076         151 ISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGD  230 (288)
Q Consensus       151 ~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~  230 (288)
                      ..|+.|+||++|++.+........                       +..  .....++|||||  .++.++||+|++||
T Consensus         5 ~~G~~G~~P~~yv~~~~~~~~~~~-----------------------~~~--~~~~~~~Alydy--~a~~~~ELsf~~Gd   57 (98)
T d1udla_           5 SSGQKGWFPASHVKLLGPSSERAT-----------------------PAF--HPVCQVIAMYDY--AANNEDELSFSKGQ   57 (98)
T ss_dssp             CSSCCSSCCCCCCCCCSCCCCCCC-----------------------SCC--CCSEEEEESSCC--CCSSTTSCCCCTTC
T ss_pred             CCCceeeEcccceeECCCcccccC-----------------------CCC--CCccEEEEccCC--CCCCCCEeeEcCCC
Confidence            467899999999987665422110                       000  013469999999  56778899999999


Q ss_pred             EEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         231 IIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       231 ~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      +|.|+++.++|||.++++|+.||||++||+.+.+..
T Consensus        58 ~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~~~   93 (98)
T d1udla_          58 LINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             EEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCS
T ss_pred             EEEEeEecCCCeEEEEECCeEEEEchHHEEECCCCC
Confidence            999999999999999999999999999999988654

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-16  Score=101.99  Aligned_cols=55  Identities=24%  Similarity=0.407  Sum_probs=50.9

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      .+++|||+|  .+..++||+|.+||+|.|+++.++|||.++.+|+.||||++||+++
T Consensus         2 tyv~Alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           2 TYVQALFDF--DPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEEESSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCC--CcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            379999999  5577789999999999999999999999999999999999999985

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2e-16  Score=102.26  Aligned_cols=54  Identities=26%  Similarity=0.453  Sum_probs=50.9

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      +++|+|+|  .+++++||+|.+||+|.|++..++|||.|+.+|+.|+||++||+++
T Consensus         3 yarAlydy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           3 WARALYDF--EALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             EEEESSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCC--CCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            89999999  5677889999999999999999999999999999999999999986

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.62  E-value=3.3e-16  Score=101.59  Aligned_cols=56  Identities=27%  Similarity=0.407  Sum_probs=51.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      .+++|||+|  .++.++||+|.+||+|.|+++.++|||.|+++|+.||||++||+++.
T Consensus         3 ~~~~Alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~n   58 (58)
T d1sema_           3 KFVQALFDF--NPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYN   58 (58)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECCCC--CcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEECc
Confidence            489999999  55777899999999999999999999999999999999999999863

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=5.6e-16  Score=99.41  Aligned_cols=54  Identities=17%  Similarity=0.304  Sum_probs=50.5

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      +++|+|+|  .++.++||+|.+||+|.|+++.++|||.++++|+.||||++||+.+
T Consensus         2 ~~vAl~dy--~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDY--QEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCC--CCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            68999999  5678889999999999999999999999999999999999999875

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.7e-16  Score=107.31  Aligned_cols=63  Identities=35%  Similarity=0.510  Sum_probs=56.0

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCcc
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSV  269 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~  269 (288)
                      +.+++|+|+|  .+..++||+|.+||+|.|+++.+++||.++++++.||||.+||+++.......
T Consensus        10 ~~~~rAlydy--~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~~~~~~~   72 (76)
T d1ujya_          10 QLIVKARFNF--KQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSG   72 (76)
T ss_dssp             CEEEECCSCB--CCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCHHHHTC
T ss_pred             CEEEEECccC--CCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECCCCCCCC
Confidence            4579999999  56778899999999999999999999999999999999999999987655433

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5e-15  Score=102.78  Aligned_cols=65  Identities=29%  Similarity=0.510  Sum_probs=55.4

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC-----CeeeEecCCcEEEcCCCCCccCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN-----GKTGHFPFTHVEFIPTNETSVET  271 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~-----~~~G~~P~~~v~~~~~~~~~~~~  271 (288)
                      ..+++|||+|  .+..++||+|.+||+|.|+++.+++||.+++.     ++.||||++||+.+........+
T Consensus         7 g~~~~al~~y--~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~~~~~~~   76 (80)
T d1ue9a_           7 GEIAQVTSAY--VASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERASG   76 (80)
T ss_dssp             CEEEEECSCC--CCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCCSSCCC
T ss_pred             CCEEEECcCC--CCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCCCCCCCC
Confidence            4589999999  56777899999999999999999999999874     35899999999999877655443

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.2e-15  Score=95.70  Aligned_cols=51  Identities=20%  Similarity=0.300  Sum_probs=48.0

Q ss_pred             EEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEE
Q psy5076         208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE  260 (288)
Q Consensus       208 ~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~  260 (288)
                      .+|+|+|  .++.++||+|.+||+|.|+++.++|||.++.+++.||||++||+
T Consensus         3 yval~~y--~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAY--TAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCB--CCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             EEEeeeE--CCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            5799999  67888899999999999999999999999999999999999996

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-15  Score=100.02  Aligned_cols=57  Identities=30%  Similarity=0.280  Sum_probs=51.7

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      ...++|||+|  .+..++||+|.+||+|.|++..+++||.++++|+.||||++||++..
T Consensus         5 g~~v~Aly~y--~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~~   61 (62)
T d1k4us_           5 GSQVEALFSY--EATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCB--CCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CCEEEECCCC--CCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEECC
Confidence            3478999999  56778899999999999999999999999999999999999998764

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.6e-15  Score=97.25  Aligned_cols=52  Identities=27%  Similarity=0.392  Sum_probs=48.6

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEE
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE  260 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~  260 (288)
                      .++|+|+|  .++.++||+|++||+|.|+++.+++||.++.+|+.||||++||+
T Consensus         4 r~~Alydy--~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   55 (58)
T d1uj0a_           4 RVRALYDF--EAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT   55 (58)
T ss_dssp             EEEESSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEE
T ss_pred             EEEECCCC--CCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEe
Confidence            59999999  55777899999999999999999999999999999999999997

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=3.9e-15  Score=96.62  Aligned_cols=55  Identities=25%  Similarity=0.320  Sum_probs=49.8

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP  263 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~  263 (288)
                      +++|+|+|  .+..++||+|.+||+|.|+++.+++||.+++  +++.|+||++||+.+.
T Consensus         2 ~~~Alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~in   58 (58)
T d1jo8a_           2 WATAEYDY--DAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             CEEESSCB--CCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEEccCC--CCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEcC
Confidence            69999999  5677889999999999999999999999887  4789999999999863

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=9.8e-16  Score=99.47  Aligned_cols=55  Identities=20%  Similarity=0.363  Sum_probs=50.8

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      .++|+|+|  .++.++||+|++||+|.|+++.+++||.++.+++.||||++||++++
T Consensus         4 ~~~al~dy--~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~ld   58 (58)
T d1ng2a1           4 TYRAIADY--EKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD   58 (58)
T ss_dssp             EEECSSCB--CCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSS
T ss_pred             EEEECccC--cCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEECc
Confidence            68999999  56778899999999999999999999999999999999999998763

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.7e-15  Score=100.61  Aligned_cols=59  Identities=31%  Similarity=0.439  Sum_probs=52.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..++|||+|  .++.++||+|.+||+|.|+++ +++||.++++|+.||||.+||+.+.....
T Consensus        11 ~~~~alydy--~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~~~~~   69 (74)
T d1j3ta_          11 LKAQALCSW--TAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGSES   69 (74)
T ss_dssp             CEEEESSCB--CCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCSTT
T ss_pred             eEEEEccCC--CCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECCCCCC
Confidence            479999999  667888999999999999998 56899999999999999999999876554

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=7.3e-15  Score=95.15  Aligned_cols=54  Identities=30%  Similarity=0.474  Sum_probs=49.0

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC--CCeeEEEeCCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~--~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      .++|+|+|  .+++++||+|.+||+|.|+++.+  ++||.++++|+.||||.+||+.|
T Consensus         3 ~~~Alydy--~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           3 KAVALYSF--AGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             EEEESSCB--CCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEccCC--CCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            58999999  67888899999999999999864  58899999999999999999875

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=7e-15  Score=94.90  Aligned_cols=54  Identities=28%  Similarity=0.441  Sum_probs=48.8

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEE
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEF  261 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~  261 (288)
                      .+++|+|||  .++.++||+|.+||+|.|+.+.+++||.++. +|+.|+||++||++
T Consensus         2 ~~v~Alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           2 EYVRALFDF--NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCB--CCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             CEEEECCCC--CcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            389999999  5677789999999999999999999999976 57999999999986

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.5e-14  Score=93.29  Aligned_cols=55  Identities=16%  Similarity=0.125  Sum_probs=48.2

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCC-CeeEEEeCCeeeEecCCcEEEcC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNIN-GQWEGELNGKTGHFPFTHVEFIP  263 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~-~w~~~~~~~~~G~~P~~~v~~~~  263 (288)
                      +++|||+|  .+..++||+|++||+|.|+++.++ +||.++.+++.||||++||+++.
T Consensus         2 ~~vAlydy--~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~vd   57 (57)
T d1opka1           2 LFVALYDF--VASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN   57 (57)
T ss_dssp             EEEESSCB--CCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESS
T ss_pred             EEEECccC--CCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEECC
Confidence            57899999  567788999999999999988665 57789999999999999999873

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.7e-14  Score=101.32  Aligned_cols=60  Identities=28%  Similarity=0.406  Sum_probs=52.5

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEcCCCCCc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      .++|||+|  .+..++||+|++||+|.|+++.  +.+||.++++|+.||||++||+++......
T Consensus         7 ~~rAlydy--~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~~~~~   68 (93)
T d1uffa_           7 GYRALYPF--EARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE   68 (93)
T ss_dssp             CEEESSCB--CCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSSSSC
T ss_pred             EEEECccC--CCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCCCCCC
Confidence            68999999  5677889999999999999876  467889999999999999999999766544

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.6e-14  Score=92.12  Aligned_cols=55  Identities=27%  Similarity=0.665  Sum_probs=51.6

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      +.++|+++|.+++.++|+|++||.|.|++..+++||.|+ .+|+.|+||++||+++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR-LHNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEE-ECCcEEEEEHHHEEEc
Confidence            468999999999999999999999999999999999999 6899999999999875

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.1e-14  Score=95.92  Aligned_cols=60  Identities=20%  Similarity=0.162  Sum_probs=52.4

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCCCCCc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNETS  268 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~~~~  268 (288)
                      +++|+|+|  .+..++||+|.+||+|.|+++.+.+||.++. +|+.||||++||+++.....+
T Consensus         4 ~v~Alydf--~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~~~~   64 (67)
T d1gl5a_           4 IVVAMYDF--QATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNNLD   64 (67)
T ss_dssp             CEEECSCB--CCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTTTTTS
T ss_pred             EEEECCCC--CCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecCCCcc
Confidence            68999999  5677889999999999999999999999864 579999999999987765543

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.9e-14  Score=101.24  Aligned_cols=63  Identities=14%  Similarity=0.174  Sum_probs=55.1

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC----CCeeEEEeCCeeeEecCCcEEEcCCCCCccCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI----NGQWEGELNGKTGHFPFTHVEFIPTNETSVET  271 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~----~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~~~  271 (288)
                      +++|+|+|  .+..++||+|.+||+|.|+++.+    .+||.++.+++.||||++||+++....+....
T Consensus        19 ~~~a~~~f--~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~~~~~~~   85 (92)
T d1ug1a_          19 LFQAERNF--NAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRSHSDA   85 (92)
T ss_dssp             EEEESSCC--CCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCSSCCCC
T ss_pred             EEEEcCCc--CCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCccccccc
Confidence            68999999  67888899999999999999864    78999999999999999999999766654433

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.4e-14  Score=93.98  Aligned_cols=57  Identities=32%  Similarity=0.666  Sum_probs=53.0

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      ...++|+++|.++..++|+|++||+|.|++..+++||.|+ .+|+.|+||++||++..
T Consensus         5 g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~-~~g~~G~~P~~yVe~~~   61 (62)
T d1k4us_           5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGE-SKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEE-CSSCEEEECGGGCCCSC
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEE-ECCcEEEEchHHeEECC
Confidence            4678999999999999999999999999999999999999 78999999999998754

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.49  E-value=9.9e-15  Score=92.72  Aligned_cols=52  Identities=15%  Similarity=0.100  Sum_probs=46.6

Q ss_pred             EEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEE
Q psy5076         208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEF  261 (288)
Q Consensus       208 ~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~  261 (288)
                      ++|+|+|  .+..++||+|.+||+|.|+++.+++||.++ .+|+.||||++||++
T Consensus         1 V~Alydy--~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDY--QTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCC--CCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeE--CCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            5789999  667888999999999999999999999987 467899999999974

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1e-15  Score=116.61  Aligned_cols=82  Identities=18%  Similarity=0.313  Sum_probs=70.0

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEeCC-CCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhhh
Q psy5076          10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSN-TILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSL   88 (288)
Q Consensus        10 ~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~-~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~L   88 (288)
                      ...||||.|+|++|+++|+.+.. |+||||.|+ +..|.|+|+++..+...|++|...+ .     |...+-.|.||.|+
T Consensus         6 ~~gw~~G~isr~~a~~~L~~~~~-GtFLvR~S~~s~~G~~tis~~~~~~~~~~~i~~~~-p-----~t~~dl~~~sL~dl   78 (141)
T d1bg1a3           6 NEGYIMGFISKERERAILSTKPP-GTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVE-P-----YTKQQLNNMSFAEI   78 (141)
T ss_dssp             HSSCCCBCCCTTGGGTTTTTSCT-TCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCC-C-----BCGGGGTSSCHHHH
T ss_pred             cCCeEEEeCCHHHHHHHhhCCCC-CeEEEEecCCccCCCEEEEEEecCcCCceEEeecC-C-----eecCccccCCHHHH
Confidence            46899999999999999987755 999999997 5689999999999999999997643 2     66667789999999


Q ss_pred             hhhheecccC
Q psy5076          89 LAFYKVHYLD   98 (288)
Q Consensus        89 V~~y~~~~l~   98 (288)
                      |.||+.....
T Consensus        79 I~~y~~~~~~   88 (141)
T d1bg1a3          79 IMGYKIMDAT   88 (141)
T ss_dssp             TTSCCCBCTT
T ss_pred             HHhhhhhccc
Confidence            9999876544

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.8e-14  Score=105.80  Aligned_cols=59  Identities=17%  Similarity=0.202  Sum_probs=53.4

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  266 (288)
                      ..++|||+|  .+..++||+|.+||+|.|+++.++|||.|+.+|+.||||++||+.+....
T Consensus        15 ~~~~alydy--~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~   73 (118)
T d1ng2a2          15 EPYVAIKAY--TAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDV   73 (118)
T ss_dssp             EEEEESSCB--CCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTSCH
T ss_pred             cEEEECcCC--CCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECCCcc
Confidence            468899999  66788899999999999999999999999999999999999999986543

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.48  E-value=3.4e-14  Score=91.88  Aligned_cols=56  Identities=32%  Similarity=0.778  Sum_probs=52.2

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      ..++|+++|.++..++|+|++||+|.|++..+++||.|+ .+|+.|+||++||++++
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yvep~n   58 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ-LNNRRGIFPSNYVCPYN   58 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEE-ETTEEEEEEGGGEEECC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEE-ECCeEEEEEhhhEEECc
Confidence            468999999999999999999999999999999999999 68999999999999763

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.48  E-value=2.5e-14  Score=90.84  Aligned_cols=53  Identities=34%  Similarity=0.763  Sum_probs=49.7

Q ss_pred             EeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       113 ~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      ++|+|+|.++..++|+|++||.|.|+++.+++||.+++.+|+.|+||++||++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            57999999999999999999999999988899999988889999999999974

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3.7e-14  Score=91.42  Aligned_cols=55  Identities=58%  Similarity=1.061  Sum_probs=51.5

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      ..++|+++|.++..++|+|++||+|.|+.+.+++||.+++.+|+.|+||++||++
T Consensus         2 ~~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             CEEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            3588999999999999999999999999999999999997788999999999986

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.48  E-value=4e-14  Score=90.54  Aligned_cols=54  Identities=31%  Similarity=0.784  Sum_probs=50.8

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      .++|+++|.++.+++|+|++||.|.|+++.+++||.++ .+|+.|+||++||+.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEE-ECCeEEEEeHHHEEEC
Confidence            47899999999999999999999999999999999999 7899999999999864

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.48  E-value=2.4e-14  Score=108.60  Aligned_cols=71  Identities=21%  Similarity=0.396  Sum_probs=57.8

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeC---CeEEEEEEEeecCCCcceEEeeCCcccCChhh
Q psy5076          11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN---NKVSHYIINKITNTEQQTCYKIGDKTFSDLPS   87 (288)
Q Consensus        11 ~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~---~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~   87 (288)
                      ..||||.|+|++||++|+.... |+||||.|.+..|.|+||++..   +.|+||+|.....          +..|.++.+
T Consensus         9 ~~~~~G~isr~~ae~~L~~~~~-GtFLvR~S~s~~g~~~ls~~~~~~~~~v~h~~i~~~~~----------~~~~~sl~d   77 (131)
T d1uura3           9 EGIIYGYMGRQEVNDALQNQDP-GTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDT----------AAAKKTFPD   77 (131)
T ss_dssp             HTSSCBSCCHHHHHHTTSSCCT-TCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGS----------BTTTBCHHH
T ss_pred             CCcEEccCCHHHHHHHHhcCCC-CeEEEEecCCCCCcEEEEEEEecCCCcEEEEEEeecCC----------CcccccHHH
Confidence            4799999999999999987655 9999999998899999999974   6899999975432          235667777


Q ss_pred             hhhhh
Q psy5076          88 LLAFY   92 (288)
Q Consensus        88 LV~~y   92 (288)
                      ++..|
T Consensus        78 ~l~~~   82 (131)
T d1uura3          78 FLSEH   82 (131)
T ss_dssp             HHTTC
T ss_pred             HHHhH
Confidence            66544

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.2e-14  Score=90.83  Aligned_cols=54  Identities=30%  Similarity=0.698  Sum_probs=50.6

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      .++|+++|.++..++|+|++||+|.|+++.+++||.++ .+|+.|+||++||+++
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEE-ECCeEEEEEHhHEEEC
Confidence            57899999999999999999999999998889999999 6899999999999874

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.1e-14  Score=89.25  Aligned_cols=52  Identities=19%  Similarity=0.436  Sum_probs=49.3

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeE
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ  164 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~  164 (288)
                      .++|+++|.++.+++|+|++||+|.|+++.+++||.|+ .+++.||||++||+
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~-~~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR-KDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEE-SSSCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEE-ECCcEeEecHHhCC
Confidence            46899999999999999999999999999999999999 88999999999986

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-14  Score=95.12  Aligned_cols=54  Identities=28%  Similarity=0.287  Sum_probs=49.0

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~  262 (288)
                      .++|+|+|  .++.++||+|.+||+|.|+++.+++||.+.+  +++.|+||++||+++
T Consensus         5 ~~rAl~df--~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           5 IFRAMYDY--MAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CEECCSCC--CCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             EEEECccC--CCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            68999999  5677889999999999999999999999887  578999999999975

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.3e-14  Score=95.59  Aligned_cols=55  Identities=24%  Similarity=0.420  Sum_probs=47.0

Q ss_pred             eEEEEEEcccCCCCCCC-eeeecCCCEEEEEEeCC-----CCeeEEEe-CCeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYDKT-ALKLEIGDIIKVTKTNI-----NGQWEGEL-NGKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~-eLs~~~g~~v~v~~~~~-----~~w~~~~~-~~~~G~~P~~~v~~~  262 (288)
                      .+++|+|+|  .+..++ ||+|.+||+|.|+++.+     .|||.++. +|+.||||++||+.+
T Consensus         6 ~~~~Alydy--~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           6 EFARALYDF--VPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             EEEEESSCB--CCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             EEEEECccC--CCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            479999999  455544 99999999999998864     58999986 689999999999975

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2e-14  Score=92.35  Aligned_cols=53  Identities=32%  Similarity=0.397  Sum_probs=43.0

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCcEEE
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEF  261 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~  261 (288)
                      .|+|+|+|  .+..++||+|.+||+|.|+.+. +++||.+.++|+.||||++||+.
T Consensus         2 ~a~Alydy--~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDF--KATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCB--CCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEEeeCC--CCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            48899999  5677889999999999988765 57888999999999999999963

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.4e-14  Score=94.94  Aligned_cols=59  Identities=15%  Similarity=0.255  Sum_probs=50.6

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC--CCeeEEE-eCCeeeEecCCcEEEcCCCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI--NGQWEGE-LNGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~--~~w~~~~-~~~~~G~~P~~~v~~~~~~~  266 (288)
                      .+++|+|+|  .++.++||+|.+||+|.|+++.+  +|||.++ .+|+.||||++||+++.+..
T Consensus         7 ~~~~Alydf--~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~~p   68 (71)
T d1u5sa1           7 HVVQTLYPF--SSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP   68 (71)
T ss_dssp             SEEEESSCC--CCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSC
T ss_pred             EEEEECccC--CCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCCCC
Confidence            479999999  56777899999999999998754  4899886 56899999999999997643

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.9e-14  Score=90.33  Aligned_cols=54  Identities=19%  Similarity=0.283  Sum_probs=48.1

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~  262 (288)
                      .++|+|+|  .++.++||+|++||+|.|+++.+++||.+..  +++.||||++||+++
T Consensus         2 l~vAl~dy--~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDY--EAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCB--CCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCC--CCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            46799999  5677889999999999999999999998875  689999999999875

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=7.8e-14  Score=90.16  Aligned_cols=54  Identities=26%  Similarity=0.685  Sum_probs=50.4

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~  165 (288)
                      .+++|+|+|.++..++|+|++||+|.|+++.+++||.++ .+|+.|+||++||+.
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGE-NHRGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEES
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEE-ECCeEEEEehHhEee
Confidence            468999999999999999999999999999989999999 579999999999973

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.3e-14  Score=95.98  Aligned_cols=56  Identities=20%  Similarity=0.243  Sum_probs=50.1

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  264 (288)
                      ..++|+|+|  .+..++||+|++||+|.|+++ +++||.++++++.||||.+||++++.
T Consensus         9 ~~~vAl~~y--~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~~   64 (69)
T d1uhfa_           9 EEYIALYPY--SSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             EEEECSSCB--CCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCC
T ss_pred             cEEEECccC--CCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECCC
Confidence            368899999  567788999999999999987 56899999999999999999999865

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.1e-14  Score=93.10  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC---CCeeEEEeCCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI---NGQWEGELNGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~---~~w~~~~~~~~~G~~P~~~v~~~  262 (288)
                      .++|+|+|  .++.++||+|++||+|.|+++.+   .|||.++.+|+.||||++||+.+
T Consensus         6 ~v~Alydy--~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           6 VIYALWDY--EPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             EEEESSCB--CCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             EEEEeeCC--CCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            68899999  56788899999999999998764   47999999999999999999865

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.4e-14  Score=96.90  Aligned_cols=57  Identities=30%  Similarity=0.400  Sum_probs=50.4

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      .++|||+|  .++.++||+|.+||+|.|+++.+ ++||.++++|+.||||++||+++...
T Consensus        12 ~~~alydy--~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~p   69 (72)
T d1ugva_          12 KAKALYAC--KAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CEEESSCB--CCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             EEEEcccC--CCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCCC
Confidence            69999999  56778899999999999988765 57999999999999999999999753

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.9e-14  Score=96.39  Aligned_cols=57  Identities=18%  Similarity=0.222  Sum_probs=51.0

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeC----CCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN----INGQWEGELNGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~----~~~w~~~~~~~~~G~~P~~~v~~~~~~  265 (288)
                      +++|||+|  .+..++||+|.+||+|.|+++.    .++||.++.+++.||||++||++++..
T Consensus        15 ~~~Alydy--~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~~   75 (79)
T d1uhca_          15 VYFAVYTF--KARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             CEEESSCB--CCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             EEEECccC--CCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCCC
Confidence            68999999  6788889999999999999875    369999999999999999999998643

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.6e-13  Score=91.52  Aligned_cols=58  Identities=33%  Similarity=0.697  Sum_probs=53.4

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      .++|+|+|.+...++|+|++||+|.|+.+.+.+||.+++.+|+.||||++||+++...
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~   61 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN   61 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTTT
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecCC
Confidence            5789999999999999999999999999988899999877889999999999876653

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.6e-14  Score=91.90  Aligned_cols=55  Identities=24%  Similarity=0.553  Sum_probs=51.6

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      +.++|+++|.++..++|+|++||+|.|+++.+++||.++ .+++.||||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~-~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQ-MKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEE-ECCCCCCCCGGGCCCS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEE-ECCCCcEEcHhHEEEC
Confidence            568999999999999999999999999999999999999 6789999999999875

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.6e-13  Score=88.76  Aligned_cols=55  Identities=29%  Similarity=0.605  Sum_probs=50.9

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEec
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKY  166 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~  166 (288)
                      .++|+|+|.++..++|+|++||.|.|+++.+++||.++. .+++.|+||++||+.+
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            588999999999999999999999999999999999985 5689999999999875

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=6.1e-14  Score=94.90  Aligned_cols=57  Identities=19%  Similarity=0.307  Sum_probs=47.5

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEe-CCCCeeEEEeC--CeeeEecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NINGQWEGELN--GKTGHFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~-~~~~w~~~~~~--~~~G~~P~~~v~~~~~  264 (288)
                      .++|||+|.+ ..+++||+|++||+|.|+.+ ..+|||.++++  ++.||||++||+.+..
T Consensus         9 ~~~Alydy~~-~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           9 KVKTIFPHTA-GNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             EEECSSCBCC-SSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             EEEEeeccCC-CCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            6899999943 23567999999999999865 45789999875  7899999999999965

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=9.4e-14  Score=94.60  Aligned_cols=60  Identities=12%  Similarity=0.066  Sum_probs=52.0

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe------CCeeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL------NGKTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~------~~~~G~~P~~~v~~~~~~~  266 (288)
                      ...++|||||  .+..++||+|.+||+|.|+++.+++||.++.      +++.||||++||+++....
T Consensus         7 g~~~~al~dy--~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~ps   72 (74)
T d1wfwa_           7 GSTMTVIKDY--YALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSGPS   72 (74)
T ss_dssp             SCEEECCSCB--CCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCSTT
T ss_pred             CCEEEEeEEE--CCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCCCC
Confidence            3479999999  5678889999999999999999999998875      3689999999999887543

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.1e-15  Score=99.04  Aligned_cols=60  Identities=23%  Similarity=0.289  Sum_probs=51.7

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCC-eeeEecCCcEEEcCCCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG-KTGHFPFTHVEFIPTNE  266 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~-~~G~~P~~~v~~~~~~~  266 (288)
                      .++++|||+|  .+..++||+|.+||+|.|+++.+++||.|++++ ..||||++||+++....
T Consensus         6 ~~~v~Aly~f--~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~~   66 (71)
T d2hspa_           6 KCAVKALFDY--KAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPE   66 (71)
T ss_dssp             SSCEECCSCC--CCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCCC
T ss_pred             cEEEEEcccC--CcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCcc
Confidence            5579999999  567788999999999999999999999998765 45699999999886544

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.6e-13  Score=89.08  Aligned_cols=57  Identities=26%  Similarity=0.608  Sum_probs=51.8

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ..++|+|+|.++..+||+|++||+|.|++.. ++||.+...+|+.|+||++||+.+..
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            4689999999999999999999999999865 58999988889999999999998765

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=4.4e-14  Score=91.75  Aligned_cols=55  Identities=18%  Similarity=0.362  Sum_probs=47.8

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~  264 (288)
                      +++|+|||  .+..++||+|.+||+|.|+++. ++||.+. .+|+.||||++||+++..
T Consensus         3 ~a~alydf--~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           3 YAKSKYDF--VARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             EEEESSCB--CCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEEEccCC--CCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            79999999  6678889999999999999875 5788765 578999999999998864

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=2.6e-13  Score=90.36  Aligned_cols=57  Identities=32%  Similarity=0.765  Sum_probs=50.1

Q ss_pred             eeEEeeeccCCCCCCC-CCCCCCCCEEEEEEecC-----CCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKDE-----EHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~-eLs~~~g~~i~vl~~~~-----~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ...++|+|+|.++..+ ||+|++||+|.|+++.+     .+||.+++.+|+.|+||+|||+.+
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            4679999999998765 89999999999998764     489999977899999999999864

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.6e-13  Score=91.58  Aligned_cols=57  Identities=14%  Similarity=0.138  Sum_probs=49.1

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-CCCeeEEEeC-CeeeEecCCcEEEcCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELN-GKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-~~~w~~~~~~-~~~G~~P~~~v~~~~~~  265 (288)
                      .++|+|+|  .+..++||+|++||+|.|+++. +++||.++.. |+.||||.+||+.++..
T Consensus         8 ~~~Alydy--~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~~   66 (71)
T d1k9aa1           8 ECIAKYNF--HGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGV   66 (71)
T ss_dssp             EEEESSCB--CCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCC
T ss_pred             EEEEccCC--CCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEcccC
Confidence            69999999  5677889999999999999875 5578888875 78999999999988643

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.2e-13  Score=99.01  Aligned_cols=63  Identities=24%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC---CCCeeEEEeCC--------eeeEecCCcEEEcCCCCCccC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN---INGQWEGELNG--------KTGHFPFTHVEFIPTNETSVE  270 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~---~~~w~~~~~~~--------~~G~~P~~~v~~~~~~~~~~~  270 (288)
                      .+++|+|+|  .+.+++||+|++||+|.|+++.   +.+||.|.+.|        +.||||++||+.+....+...
T Consensus        22 ~~~~Alydy--~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~~~~~~   95 (106)
T d1i1ja_          22 SMAVALQDY--MAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPGKV   95 (106)
T ss_dssp             EEEEESSCB--CCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECSCCCE
T ss_pred             eEEEEcccc--CCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEccccCcccc
Confidence            379999999  6688889999999999999873   57899998754        579999999999876665433

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.4e-13  Score=91.01  Aligned_cols=56  Identities=16%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  264 (288)
                      .++|+|+|  .+..++||+|.+||+|.|+++.+++||.++.  .|+.||||.+||++++.
T Consensus         4 ~~vAlydf--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           4 TFVALYDY--ESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             EEEESSCB--CCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             EEEECccC--CCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECcc
Confidence            46899999  5678889999999999999999999998876  46899999999998754

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-13  Score=99.19  Aligned_cols=59  Identities=36%  Similarity=0.798  Sum_probs=54.7

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..+||+|++||+|.|+++.+++||.++ .+|+.||||++||+.+...
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~-~~g~~G~~P~nyVe~~~~~   92 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGLFPSNYVKMTTDS   92 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCB-SSSCBCCEETTSEEECCCC
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEE-ECCeEEEEchHHEEECCCC
Confidence            4569999999999999999999999999999889999998 7899999999999987754

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.7e-13  Score=86.31  Aligned_cols=55  Identities=35%  Similarity=0.740  Sum_probs=50.1

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEec
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKY  166 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~  166 (288)
                      .++|+++|.++..+||+|++||.|.|+++.+++||.++. .+++.|+||++||+++
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            367999999999999999999999999998889999886 5689999999999864

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.5e-14  Score=94.75  Aligned_cols=56  Identities=18%  Similarity=0.135  Sum_probs=50.3

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~  264 (288)
                      .++|+|+|  .++.++||+|++||+|.|+++.+.+||.++. +|+.||||++||+++++
T Consensus        10 ~v~Alydy--~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_          10 KVVALYDY--MPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             EEEBSSCC--CCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             EEEECcCC--CCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            68999999  6778889999999999999999999998864 68999999999988765

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=4.7e-13  Score=86.41  Aligned_cols=55  Identities=36%  Similarity=0.900  Sum_probs=49.1

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC--CCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~--~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ++++|+++|.+++++||+|++||+|.|+++.+  .+||.+. .+|+.|+||++||+.+
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~-~~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR-VNGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEE-ECCcEEEEcHHHEEEC
Confidence            46899999999999999999999999998764  4688888 6899999999999864

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.5e-13  Score=89.51  Aligned_cols=59  Identities=34%  Similarity=0.697  Sum_probs=52.9

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC--CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~--~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+|+|.++..+||+|++||+|.|+.+.+  ++||.+++.+|+.|+||++||+.+...
T Consensus         7 ~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~~   67 (71)
T d1u5sa1           7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             SEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCS
T ss_pred             EEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCCC
Confidence            46899999999999999999999999998753  489999878899999999999998764

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.3e-14  Score=93.17  Aligned_cols=59  Identities=31%  Similarity=0.679  Sum_probs=53.8

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.++..++|+|++||+|.|+.+.+.+||.+++.+|+.|+||++||+++..
T Consensus         8 ~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            45689999999999999999999999999988889999987788999999999987654

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.6e-13  Score=88.02  Aligned_cols=58  Identities=34%  Similarity=0.712  Sum_probs=52.2

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEeccc
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~  168 (288)
                      ..++|+++|.++.++||+|++||+|.|+++.+++||.++. .+|+.||||++||++...
T Consensus         3 ~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             eEEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECcc
Confidence            3578999999999999999999999999988889999986 468999999999998754

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.6e-13  Score=87.75  Aligned_cols=56  Identities=30%  Similarity=0.557  Sum_probs=51.1

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+++|.++..+||+|++||+|.|+.+.+++||.+.. .+++.|+||++||+.+
T Consensus         4 ~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             cEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            4588999999999999999999999999999999999986 4689999999999864

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=8e-13  Score=89.87  Aligned_cols=60  Identities=8%  Similarity=0.166  Sum_probs=53.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-----CCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-----~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.+..++||+|++||+|.|+++.+++||.+++.     +++.||||++||+++..+
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~p   71 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSGP   71 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCST
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCCC
Confidence            356899999999999999999999999999999999999853     368999999999988764

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.2e-12  Score=84.23  Aligned_cols=55  Identities=25%  Similarity=0.461  Sum_probs=48.4

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCC-eEEEEeCCCcEEEEeCCCeEecc
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQNISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~-ww~~~~~~g~~G~vP~~~v~~~~  167 (288)
                      .++|+++|.++..+||+|++||+|.|+++.+++ ||.++ .+++.||||++||+++.
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~-~~g~~G~~P~~yv~~vd   57 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ-TKNGQGWVPSNYITPVN   57 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEE-CSSCEEEEEGGGEEESS
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEE-ECCCEeEEchhheEECC
Confidence            478999999999999999999999999887654 67777 68899999999998763

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-12  Score=89.32  Aligned_cols=60  Identities=13%  Similarity=0.351  Sum_probs=53.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe----CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN----ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~----~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+++|.+..++||+|++||+|.|+++.+++||.+..    ..++.||||++||+.+...
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~   70 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCC
Confidence            35689999999999999999999999999999999999973    2457999999999988765

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.8e-13  Score=87.90  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=47.6

Q ss_pred             CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCC
Q psy5076         205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPT  264 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  264 (288)
                      ..+++|+|||  .++.++||+|.+||+|.|+++ +++||.+..  +|+.||||++||++++.
T Consensus         4 ~~~vvAlydy--~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~~   62 (65)
T d1qcfa1           4 RIIVVALYDY--EAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   62 (65)
T ss_dssp             CCEEEESSCB--CCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             cEEEEECCcC--CCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECcc
Confidence            3478999999  567788999999999999987 556776644  57999999999998854

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=8.1e-13  Score=88.16  Aligned_cols=56  Identities=29%  Similarity=0.352  Sum_probs=46.5

Q ss_pred             EEEEEEcccC----CCCCCCeeeecCCCEEEEEEe-CCCCeeEEEe--CCeeeEecCCcEEEc
Q psy5076         207 FARVKQVRVP----NAYDKTALKLEIGDIIKVTKT-NINGQWEGEL--NGKTGHFPFTHVEFI  262 (288)
Q Consensus       207 ~~~~l~~~~~----~~~~~~eLs~~~g~~v~v~~~-~~~~w~~~~~--~~~~G~~P~~~v~~~  262 (288)
                      .++|+++|..    .+.+++||+|++||+|.|++. .++|||.|++  +|+.||||++||+++
T Consensus         6 k~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             cEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            4688888842    235677999999999999976 4679999987  589999999999985

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=1.8e-13  Score=87.96  Aligned_cols=52  Identities=21%  Similarity=0.266  Sum_probs=43.2

Q ss_pred             EEEEEcccCCCCCCCeeeecCCCEEEEEEeCCC-CeeEEEe--CCeeeEecCCcEEE
Q psy5076         208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNIN-GQWEGEL--NGKTGHFPFTHVEF  261 (288)
Q Consensus       208 ~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~-~w~~~~~--~~~~G~~P~~~v~~  261 (288)
                      ++|||+|  .++.++||+|.+||+|.|+++.+. +||.+..  +|+.||||++||+.
T Consensus         2 aralydf--~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAY--VQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCB--CCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeee--CCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            6899999  667888999999999999988765 4555443  68999999999973

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1e-12  Score=89.22  Aligned_cols=58  Identities=28%  Similarity=0.559  Sum_probs=52.4

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.++..+||+|++||+|.|++++ ++||.++ .+|+.||||++||+.+...
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~~-~~ww~g~-~~g~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGE-VHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-SSEEEEE-STTCCCEEEGGGEEECCCS
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEcc-CCeEEEE-ECCcEEEEchhhEEECCCC
Confidence            35689999999999999999999999999974 6899998 6899999999999988764

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.7e-13  Score=91.44  Aligned_cols=58  Identities=29%  Similarity=0.633  Sum_probs=53.3

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+|+|.+..++||+|++||+|.|+++.+++||.+. .+++.||||++||+.+...
T Consensus        11 ~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~i~~~   68 (76)
T d1ujya_          11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT-LNGRTGWFPSNYVREIKSS   68 (76)
T ss_dssp             EEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEE-ETTEEEEECTTTSEECCHH
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEE-ECCcEEEEchHHEEECCCC
Confidence            467899999999999999999999999999889999998 6799999999999987654

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.7e-12  Score=87.44  Aligned_cols=59  Identities=42%  Similarity=0.756  Sum_probs=51.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+|+|.+...+||+|++||+|.|+.+. +.+||.+++.+|+.|+||.+||+.+..
T Consensus         6 g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~   65 (71)
T d1k9aa1           6 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   65 (71)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEccc
Confidence            34699999999999999999999999999875 457888986678999999999998764

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.3e-13  Score=94.19  Aligned_cols=57  Identities=30%  Similarity=0.380  Sum_probs=49.3

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeC---------------CCCeeEEEe--CCeeeEecCCcEEEcCCC
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN---------------INGQWEGEL--NGKTGHFPFTHVEFIPTN  265 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~---------------~~~w~~~~~--~~~~G~~P~~~v~~~~~~  265 (288)
                      .++|||+|  .+..++||+|.+||+|.|+.+.               ++|||.|+.  +|+.||||++||+.+...
T Consensus         5 ~~raly~y--~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~~   78 (83)
T d1phta_           5 QYRALYDY--KKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRK   78 (83)
T ss_dssp             EEEECSCB--CCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEE
T ss_pred             EEEEcCcc--CCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCCc
Confidence            58999999  5677789999999999999753               468999976  689999999999998654

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.5e-13  Score=86.65  Aligned_cols=55  Identities=24%  Similarity=0.675  Sum_probs=49.0

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC---CCeEEEEeCCCcEEEEeCCCeEec
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE---EHWWTAQNISGEVGSIPVPYVQKY  166 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~---~~ww~~~~~~g~~G~vP~~~v~~~  166 (288)
                      ..++|+|+|.++..+||+|++||+|.|+++.+   .+||.|+ .+|+.|+||++||+.+
T Consensus         5 g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~-~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR-LNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEE-ETTEEEEEEGGGEECC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEE-ECCeEEEEchHHhEeC
Confidence            46889999999999999999999999998753   4799999 5899999999999865

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=5.7e-13  Score=92.65  Aligned_cols=56  Identities=23%  Similarity=0.261  Sum_probs=47.6

Q ss_pred             eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-----CCeeEEEe----------CCeeeEecCCcEEEcC
Q psy5076         206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-----NGQWEGEL----------NGKTGHFPFTHVEFIP  263 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-----~~w~~~~~----------~~~~G~~P~~~v~~~~  263 (288)
                      ..++|+|+|  .+..++||+|++||+|.|+++.+     +|||.|..          +|+.||||+|||+.++
T Consensus        13 ~~~~Alydy--~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          13 FKVQAQHDY--TATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             EEEEESSCB--CCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             EEEEEceeE--CCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            469999999  56778899999999999998753     68999875          3578999999999874

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-12  Score=97.36  Aligned_cols=59  Identities=20%  Similarity=0.399  Sum_probs=54.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.+...+||+|++||+|.|+++.++|||.|+ .+|+.||||++||+.+...
T Consensus        14 g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   72 (118)
T d1ng2a2          14 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR-KDDVTGYFPSMYLQKSGQD   72 (118)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEE-ETTEEEEEEGGGEEETTSC
T ss_pred             CcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEE-ECCeEEEEehhhEEECCCc
Confidence            4678999999999999999999999999999999999999 6899999999999987654

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.6e-13  Score=87.87  Aligned_cols=52  Identities=17%  Similarity=0.381  Sum_probs=43.9

Q ss_pred             EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCcEEE
Q psy5076         207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEF  261 (288)
Q Consensus       207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~  261 (288)
                      .++|||+|  .++.++||+|.+||+|.|+++.++ ||.+.  .+|+.||||++||++
T Consensus         8 ~~~al~dy--~a~~~~eLs~~~Gd~i~v~~~~~~-ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           8 LVIALHSY--EPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             EEEESSCB--CCCSTTBCCBCTTCEEEEEECCSS-EEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEECCCC--CcCCcCCcCCCCCCEEEEeEEcCC-CEEEEeccCCeEeEEcHHHEEe
Confidence            79999999  567788999999999999998665 55443  468999999999975

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.9e-13  Score=88.33  Aligned_cols=57  Identities=33%  Similarity=0.683  Sum_probs=51.5

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~  168 (288)
                      ...++|+++|.+..++||+|++||+|.|++++ ++||.++ .+++.||||++||+++..
T Consensus         8 ~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~~-~~Ww~~~-~~g~~G~vP~~yv~~~~~   64 (69)
T d1uhfa_           8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQKD-GEWWTGS-IGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEEE-TTEEEEC-STTCCEEECGGGCEECCC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEec-CCEEEEE-ECCcEEEEchhhEEECCC
Confidence            35789999999999999999999999999875 5799998 789999999999998764

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.4e-13  Score=93.79  Aligned_cols=63  Identities=27%  Similarity=0.419  Sum_probs=50.0

Q ss_pred             CeEEEEEEcccCCC----CCCCeeeecCCCEEEEEEeCC-CCeeEEE-eCCeeeEecCCcEEEcCCCCC
Q psy5076         205 PAFARVKQVRVPNA----YDKTALKLEIGDIIKVTKTNI-NGQWEGE-LNGKTGHFPFTHVEFIPTNET  267 (288)
Q Consensus       205 ~~~~~~l~~~~~~~----~~~~eLs~~~g~~v~v~~~~~-~~w~~~~-~~~~~G~~P~~~v~~~~~~~~  267 (288)
                      ..+++|+|||.+..    ...+||+|++||+|.|+.+.+ +|||.+. .+|+.||||++||+++.....
T Consensus        17 ~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~~~   85 (96)
T d1wiea_          17 VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNES   85 (96)
T ss_dssp             EEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCCC
T ss_pred             ceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCccc
Confidence            44799999996531    224699999999999997765 5688886 478999999999999976654

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.2e-12  Score=89.34  Aligned_cols=59  Identities=15%  Similarity=0.320  Sum_probs=52.8

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC----CCeEEEEeCCCcEEEEeCCCeEecccCC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGEVGSIPVPYVQKYSEGM  170 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~----~~ww~~~~~~g~~G~vP~~~v~~~~~~~  170 (288)
                      ..++|+++|.++..+||+|++||+|.|+++.+    .+||.++ .++++||||++||+++....
T Consensus        18 ~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~-~~g~~G~~P~~yv~~~~~~~   80 (92)
T d1ug1a_          18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLID-NGVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEE-CSSSEEEEEGGGEEECCCCS
T ss_pred             eEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEE-ecccEEEEEhhhceecCCcc
Confidence            46899999999999999999999999999754    6899998 68999999999999887543

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.6e-12  Score=89.31  Aligned_cols=58  Identities=28%  Similarity=0.531  Sum_probs=51.5

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC--CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~--~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+|+|.++..+||+|++||+|.|+.+.+  .+||.+. .+|+.||||++||+.+...
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~-~~g~~G~~P~~Yve~~~~~   65 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS-FQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEE-ETTEEEEEETTTEEECCSS
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEE-eCCcEEEEchHHEEECCCC
Confidence            46899999999999999999999999998763  5688887 7899999999999988764

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.1e-12  Score=82.71  Aligned_cols=52  Identities=40%  Similarity=0.889  Sum_probs=43.3

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeE
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQ  164 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~  164 (288)
                      .++|+|+|.++..+||+|++||.|.++.+. +++||.+. .+|+.||||+|||+
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~-~~g~~G~vP~nyve   54 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE-LNGKDGFIPKNYIE   54 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEE-SSSCEEEEEGGGEE
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEE-ECCcEEEEehhhEE
Confidence            488999999999999999999999988865 45778887 78999999999996

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.6e-12  Score=87.57  Aligned_cols=58  Identities=28%  Similarity=0.685  Sum_probs=51.9

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEec----CCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD----EEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~----~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+|+|.++..+||+|++||+|.|+++.    ..+||.++ .+++.||||++||+++...
T Consensus        14 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~-~~g~~G~vP~~yv~~~~~~   75 (79)
T d1uhca_          14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE-VNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEE-SSSCEEEEEGGGEEECCSS
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEE-ECCCEEEEehhhEEECCCC
Confidence            4589999999999999999999999999864    36899998 7899999999999988754

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.2e-12  Score=87.01  Aligned_cols=59  Identities=19%  Similarity=0.392  Sum_probs=49.7

Q ss_pred             eEEeeeccCCCC-CCCCCCCCCCCEEEEEEec-CCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGN-DPDDLPFKKNDILIVVSKD-EEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~-~~~eLs~~~g~~i~vl~~~-~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+|+|.+. +.++|+|++||+|.|+.+. +++||.+.. .+++.||||++||+.+..+
T Consensus         8 ~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~p   69 (72)
T d1spka_           8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             CEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCCC
Confidence            468999999985 5788999999999998654 567999985 4589999999999998653

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.6e-12  Score=87.81  Aligned_cols=58  Identities=24%  Similarity=0.432  Sum_probs=51.3

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC-CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      ..++|+|+|.++..+||+|++||+|.|+++.+ ++||.+. .+++.|+||++||+.+..+
T Consensus        11 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~-~~g~~G~~P~~yve~i~~p   69 (72)
T d1ugva_          11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT-LNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEE-SSSCEEEEEGGGEEECCSS
T ss_pred             EEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEE-eCCCEEEEchHHEEECCCC
Confidence            45899999999999999999999999998764 5688888 7899999999999988754

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.3e-12  Score=83.14  Aligned_cols=54  Identities=33%  Similarity=0.664  Sum_probs=47.5

Q ss_pred             eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEe
Q psy5076         111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQK  165 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~  165 (288)
                      ..++|+++|.++..+||+|++||+|.|+++.+ +||.+.. .+|+.||||++||++
T Consensus         7 ~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            56899999999999999999999999999764 5777654 678999999999975

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=3.7e-13  Score=96.48  Aligned_cols=57  Identities=16%  Similarity=0.187  Sum_probs=47.3

Q ss_pred             eEEEEEEcccCCCCC---CCeeeecCCCEEEEEEeCCCCeeEEEe------CCeeeEecCCcEEEc
Q psy5076         206 AFARVKQVRVPNAYD---KTALKLEIGDIIKVTKTNINGQWEGEL------NGKTGHFPFTHVEFI  262 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~---~~eLs~~~g~~v~v~~~~~~~w~~~~~------~~~~G~~P~~~v~~~  262 (288)
                      .+++|+|||.+...+   ..||+|++||+|.|+++.+.+||.++.      +|+.||||+|||++.
T Consensus         2 ~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            478999999653211   348999999999999999999999975      578999999999753

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.2e-13  Score=90.44  Aligned_cols=58  Identities=28%  Similarity=0.477  Sum_probs=51.8

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~  169 (288)
                      .++|+|+|.+...++|+|++||+|.|+++.+++||.|+..+++.|+||++||+++...
T Consensus         8 ~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             CEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             EEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            5889999999999999999999999999999999999855566679999999987654

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-12  Score=90.08  Aligned_cols=60  Identities=28%  Similarity=0.439  Sum_probs=52.3

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec---------------CCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD---------------EEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~---------------~~~ww~~~~-~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.+...+||+|++||+|.|+.+.               ++|||.|++ .+|+.||||++||+.+...
T Consensus         3 G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~~   78 (83)
T d1phta_           3 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRK   78 (83)
T ss_dssp             EEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEE
T ss_pred             CCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCCc
Confidence            35689999999999999999999999999752               367999987 5789999999999988754

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.3e-12  Score=82.53  Aligned_cols=56  Identities=32%  Similarity=0.722  Sum_probs=49.0

Q ss_pred             EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEeccc
Q psy5076         112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE  168 (288)
Q Consensus       112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~  168 (288)
                      .++|+++|.++..+||+|++||+|.|++.+ ++||.+.+ .+|+.|+||++||+.+..
T Consensus         6 ~vvAlydy~~~~~~eLs~~~Gd~i~v~~~~-~~ww~~~~~~~g~~G~vP~~yv~~~~~   62 (65)
T d1qcfa1           6 IVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   62 (65)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECC-TTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             EEEECCcCCCCCcCccCCCCCCEEEEEEEC-CCCEEEEEccCCCEEEEchHHeEECcc
Confidence            578999999999999999999999999864 57888765 568999999999998754

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.1e-11  Score=82.60  Aligned_cols=54  Identities=26%  Similarity=0.495  Sum_probs=44.7

Q ss_pred             EeeeccCC------CCCCCCCCCCCCCEEEEEEec-CCCeEEEEe-CCCcEEEEeCCCeEec
Q psy5076         113 VIAKYDFD------GNDPDDLPFKKNDILIVVSKD-EEHWWTAQN-ISGEVGSIPVPYVQKY  166 (288)
Q Consensus       113 ~~a~~~~~------~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~-~~g~~G~vP~~~v~~~  166 (288)
                      +.++++|.      +++.++|+|++||+|.|++.. +++||.|++ .+|+.||||++||+++
T Consensus         7 ~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           7 MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             EEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            45555554      478899999999999999864 578999997 4689999999999875

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.22  E-value=2.7e-12  Score=90.70  Aligned_cols=53  Identities=19%  Similarity=0.259  Sum_probs=45.5

Q ss_pred             CeEEEEEEcccCCCCCCCe-------eeecCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCcE
Q psy5076         205 PAFARVKQVRVPNAYDKTA-------LKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHV  259 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~e-------Ls~~~g~~v~v~~~~~~~w~~~~~---~~~~G~~P~~~v  259 (288)
                      ..+++|+|||++  ...++       |+|.+||+|.|+++.+++||.|++   ++..||||++++
T Consensus        21 ~~~vrAlydY~~--~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSA--AQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCC--CGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeccCC--CCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            357999999965  54445       999999999999999999999998   578999999863

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=9.6e-12  Score=79.65  Aligned_cols=52  Identities=25%  Similarity=0.564  Sum_probs=44.8

Q ss_pred             EeeeccCCCCCCCCCCCCCCCEEEEEEecCCC-eEEEEe-CCCcEEEEeCCCeE
Q psy5076         113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQN-ISGEVGSIPVPYVQ  164 (288)
Q Consensus       113 ~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~-ww~~~~-~~g~~G~vP~~~v~  164 (288)
                      ++|+|+|.++..+||+|++||+|.|++..+.+ ||.+.. .+|+.|+||++||+
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyve   55 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   55 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEE
Confidence            68999999999999999999999999886654 555543 57899999999996

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.5e-12  Score=89.37  Aligned_cols=62  Identities=18%  Similarity=0.454  Sum_probs=51.8

Q ss_pred             eeeEEeeeccCCCCC------CCCCCCCCCCEEEEEEecC-CCeEEEEeCCCcEEEEeCCCeEecccCC
Q psy5076         109 TIEKVIAKYDFDGND------PDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEGM  170 (288)
Q Consensus       109 ~~~~~~a~~~~~~~~------~~eLs~~~g~~i~vl~~~~-~~ww~~~~~~g~~G~vP~~~v~~~~~~~  170 (288)
                      +...|+|+|+|.++.      .+||+|++||+|.|+.+.+ ++||.+...+|++||||+|||+++....
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~~   84 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCcc
Confidence            367899999998754      4789999999999998765 4578887678999999999999887653

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.1e-11  Score=87.45  Aligned_cols=60  Identities=20%  Similarity=0.339  Sum_probs=51.2

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEe---cCCCeEEEEe-------CCCcEEEEeCCCeEecccC
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQN-------ISGEVGSIPVPYVQKYSEG  169 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~---~~~~ww~~~~-------~~g~~G~vP~~~v~~~~~~  169 (288)
                      ...++|+|+|.+.+.++|+|++||+|.|+.+   .+.+||.|..       .+++.||||++||+++...
T Consensus        21 ~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~   90 (106)
T d1i1ja_          21 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   90 (106)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             eeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEcccc
Confidence            4569999999999999999999999999987   3478999973       2357899999999987654

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=3.1e-11  Score=83.67  Aligned_cols=57  Identities=25%  Similarity=0.474  Sum_probs=48.9

Q ss_pred             eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC-----CCeEEEEeC---------CCcEEEEeCCCeEec
Q psy5076         110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-----EHWWTAQNI---------SGEVGSIPVPYVQKY  166 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-----~~ww~~~~~---------~g~~G~vP~~~v~~~  166 (288)
                      ...++|+|+|.++..+||+|++||+|.|+.+.+     ++||.|...         +|+.||||+|||+.+
T Consensus        12 ~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          12 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             CEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            356899999999999999999999999998643     579998742         467999999999876

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=3.9e-12  Score=91.02  Aligned_cols=56  Identities=27%  Similarity=0.587  Sum_probs=48.3

Q ss_pred             EEeeeccCCCCC-----CCCCCCCCCCEEEEEEecCCCeEEEEe-----CCCcEEEEeCCCeEecc
Q psy5076         112 KVIAKYDFDGND-----PDDLPFKKNDILIVVSKDEEHWWTAQN-----ISGEVGSIPVPYVQKYS  167 (288)
Q Consensus       112 ~~~a~~~~~~~~-----~~eLs~~~g~~i~vl~~~~~~ww~~~~-----~~g~~G~vP~~~v~~~~  167 (288)
                      .++|+|+|.++.     ..+|+|++||+|.|+++.+++||.++.     .+|++||||+|||++..
T Consensus         3 ~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~~   68 (96)
T d1kjwa1           3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERR   68 (96)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHH
T ss_pred             EEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeeeh
Confidence            578999999875     458999999999999999999999984     36789999999997543

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.08  E-value=4.9e-11  Score=84.12  Aligned_cols=54  Identities=28%  Similarity=0.543  Sum_probs=48.2

Q ss_pred             eeEEeeeccCCCCCCCC-------CCCCCCCEEEEEEecCCCeEEEEeC--CCcEEEEeCCCe
Q psy5076         110 IEKVIAKYDFDGNDPDD-------LPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYV  163 (288)
Q Consensus       110 ~~~~~a~~~~~~~~~~e-------Ls~~~g~~i~vl~~~~~~ww~~~~~--~g~~G~vP~~~v  163 (288)
                      ...++|+|+|.+...++       |+|++||+|.|+.+.+++||.|+..  +++.|+||++++
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            45689999999998888       9999999999999999999999963  578999999864

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=2.8e-11  Score=93.00  Aligned_cols=54  Identities=13%  Similarity=0.186  Sum_probs=45.7

Q ss_pred             CeEEEEEEcccCCCCCCCe-------eeecCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCcEE
Q psy5076         205 PAFARVKQVRVPNAYDKTA-------LKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHVE  260 (288)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~e-------Ls~~~g~~v~v~~~~~~~w~~~~~---~~~~G~~P~~~v~  260 (288)
                      ..+++|+|||.+  ...++       |+|.+||+|.|+++.+++||.|+.   +|..||||++|+.
T Consensus        23 ~f~vra~~dy~~--~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~   86 (145)
T d1vyva1          23 AFAVKTNVSYCG--ALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRL   86 (145)
T ss_dssp             CEEEEESSCBCT--TSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHH
T ss_pred             cEEEEEeeeeCC--ccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhh
Confidence            347999999965  44344       999999999999999999999987   6889999998743

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=9.7e-10  Score=84.17  Aligned_cols=54  Identities=26%  Similarity=0.514  Sum_probs=48.3

Q ss_pred             EEeeeccCCCCCCCC-------CCCCCCCEEEEEEecCCCeEEEEe--CCCcEEEEeCCCeEe
Q psy5076         112 KVIAKYDFDGNDPDD-------LPFKKNDILIVVSKDEEHWWTAQN--ISGEVGSIPVPYVQK  165 (288)
Q Consensus       112 ~~~a~~~~~~~~~~e-------Ls~~~g~~i~vl~~~~~~ww~~~~--~~g~~G~vP~~~v~~  165 (288)
                      .++|+|+|.+...++       |+|++||+|.|+++.+++||.|++  .+|+.|+||++++.+
T Consensus        25 ~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~e   87 (145)
T d1vyva1          25 AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLE   87 (145)
T ss_dssp             EEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHHH
T ss_pred             EEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhhh
Confidence            689999999999887       999999999999999999999996  368999999976543

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=2.7e-09  Score=80.32  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=44.7

Q ss_pred             eEEEEEEcccCCCCCC-----CeeeecCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCcE
Q psy5076         206 AFARVKQVRVPNAYDK-----TALKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHV  259 (288)
Q Consensus       206 ~~~~~l~~~~~~~~~~-----~eLs~~~g~~v~v~~~~~~~w~~~~~---~~~~G~~P~~~v  259 (288)
                      .+++|+|+|++...+.     ..|+|.+||+|.|+++.+++||.++.   ++..|+||+.|+
T Consensus        24 ~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          24 FAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             EEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            3689999998654431     13999999999999999999999986   467899999874

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=1.4e-08  Score=76.24  Aligned_cols=54  Identities=22%  Similarity=0.449  Sum_probs=46.7

Q ss_pred             eEEeeeccCCCCCCCC-------CCCCCCCEEEEEEecCCCeEEEEe--CCCcEEEEeCCCeE
Q psy5076         111 EKVIAKYDFDGNDPDD-------LPFKKNDILIVVSKDEEHWWTAQN--ISGEVGSIPVPYVQ  164 (288)
Q Consensus       111 ~~~~a~~~~~~~~~~e-------Ls~~~g~~i~vl~~~~~~ww~~~~--~~g~~G~vP~~~v~  164 (288)
                      -.++|+|+|.+...++       |+|++||+|.|+++.+++||.++.  .++..|+||+.++.
T Consensus        24 ~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~l   86 (136)
T d1vyua1          24 FAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRL   86 (136)
T ss_dssp             EEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHH
T ss_pred             EEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHHH
Confidence            4588999999887777       889999999999999999999996  34678999998743

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.6e-05  Score=58.86  Aligned_cols=73  Identities=21%  Similarity=0.395  Sum_probs=51.1

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCC-CCceEEEEeeC----CeEEEEEEEeecCCCcceEEeeCCcccCChh
Q psy5076          12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI-LGNYVLCVKEN----NKVSHYIINKITNTEQQTCYKIGDKTFSDLP   86 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~-~~~~~lsv~~~----~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~   86 (288)
                      .|..|.|+|++|+++|+.+.+ |+||+|-|++. +|..++++...    +...++.|.-         |...+-.=.+|+
T Consensus         8 G~I~GFIsK~~a~~~L~~~~~-GTFLLRFSdS~~~GgitiawV~~~~~~~~~~v~~lqP---------~t~kdl~~~sLa   77 (142)
T d1bf5a3           8 GCIMGFISKERERALLKDQQP-GTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEP---------YTKKELSAVTFP   77 (142)
T ss_dssp             TCCCCCCCHHHHHHHTTTCCS-CCCCEEECSSCSSCCEEEEECCCCSSSSCCCCEECCC---------BCHHHHHSSCHH
T ss_pred             CEEEEEecHHHHHHHhhCCCC-ceEEEEeccCccCCceEEEEEEecCCCCceeEEeeCC---------CchhhhccCCHH
Confidence            577899999999999999888 99999999986 58888888753    1222222221         211122346889


Q ss_pred             hhhhhhee
Q psy5076          87 SLLAFYKV   94 (288)
Q Consensus        87 ~LV~~y~~   94 (288)
                      |.|..|..
T Consensus        78 d~Ird~~~   85 (142)
T d1bf5a3          78 DIIRNYKV   85 (142)
T ss_dssp             HHHHTCCC
T ss_pred             HHHHHHHh
Confidence            99988764

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00079  Score=43.92  Aligned_cols=42  Identities=21%  Similarity=0.304  Sum_probs=38.2

Q ss_pred             CCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCe
Q psy5076         122 NDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV  163 (288)
Q Consensus       122 ~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v  163 (288)
                      .+..+|++++|+.|.|++..+++-|.|++..|.-|||+..++
T Consensus        34 ~g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          34 WGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CCcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            356799999999999999988999999999999999998765

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.028  Score=36.33  Aligned_cols=40  Identities=18%  Similarity=0.186  Sum_probs=34.5

Q ss_pred             CCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcE
Q psy5076         220 DKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHV  259 (288)
Q Consensus       220 ~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v  259 (288)
                      ...+|.+.+||.|.|+...+.+=|.|+. .|+-|||+..+|
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            3458999999999999999988898876 589999998765

>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Cbl
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.14  E-value=0.9  Score=28.78  Aligned_cols=42  Identities=29%  Similarity=0.423  Sum_probs=36.1

Q ss_pred             CccccCCCHHHHHHHHcC--CCCCCeEEEEeCCCCCCceEEEEee
Q psy5076          12 SWYFGMMTRQEAQAILLS--EKDNGAFLVRDSNTILGNYVLCVKE   54 (288)
Q Consensus        12 ~Wy~g~isr~~ae~lL~~--~~~~G~FLvR~s~~~~~~~~lsv~~   54 (288)
                      |=|...|+=+|+...|+.  ..+ |+|+.|-|.++.|++++-...
T Consensus         3 PgY~AFlTYDevk~rL~~~~~kP-GSYiFRlSCTrlGQWAIGyvt   46 (88)
T d3buxb3           3 PGYMAFLTYDEVKARLQKFIHKP-GSYIFRLSCTRLGQWAIGYVT   46 (88)
T ss_dssp             TTBCTTCCHHHHHHHHGGGTTST-TEEEEEECSSSTTSEEEEEEC
T ss_pred             CceeEEEeHHHHHHHHHHHhcCC-CceEEeeccccccceeeeeec
Confidence            557888999999999986  345 999999999999999888765