Psyllid ID: psy5156

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39

MLQNRFREILHENYKDFLKIYTDGSKDETGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEPITNHSLLLEEMKSLAKKHFYQKWNTTWSNVNPNENKLRRIKSTTTPWKTSSQKARLDEVCLMRMRIGHTKITHSYLFKREERPICDSCHEPVTVEHIILHCNKLRFRPPSFLGNSLANILSDNPDSISSLMRFLKQNNFLKHIGDSTANAPVPNGALKQRCAWLVFGWVTVWVMA

cHHHHHHHHHHHHccccEEEEEccccccccEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHccccccccEEEEEEcccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEcc

cHHHHHHHHHHHHccccEEEEEccccccccEEEEEEEccccEEEEEEcccccHHcHHHHHHHHHHHHccccHcccccHEEccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHcccccccccccccccccHEEEEEccHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHc

MLQNRFREILHENYKDFLKIYtdgskdetgvgcaliipqlnvtkrftlnkysSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISnlyhpnplvkeipHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISnlyhpnplvKEIQETYSSAQISIKflwcpshpcwyfwkrsssqISIKflwcpshvgisgndqadteakkatsepitnHSLLLEEMKSLAKKHFYQKWNTtwsnvnpnenklrrikstttpwktssqkaRLDEVCLMRMRightkithsylfkreerpicdschepvtVEHIILHCnklrfrppsflgnslanilsdnpdsISSLMRFLKQNNFLkhigdstanapvpngalkQRCAWLVFGWVTVWVMA

MLQNRFREILHENYKDFLKIYTDGSKDETGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEPITNHSLLLEEMKSLAKKHFYQKWnttwsnvnpnenklrrikstttpwktssqkarldEVCLMRMRIGhtkithsylfkrEERPICDSCHEPVTVEHIILHCNKLRFRPPSFLGNSLANILSDNPDSISSLMRFLKQNNFLKHIGDSTANAPVPNGALKQRCAWLVFGWVTVWVMA

*****FREILHENYKDFLKIYTDGSKDETGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHPCWYFWKRSSSQISIKFLWCPSHVGI**********************LLLEEMKSLAKKHFYQKWNTTWSNVN**********************ARLDEVCLMRMRIGHTKITHSYLFKREERPICDSCHEPVTVEHIILHCNKLRFRPPSFLGNSLANILSDNPDSISSLMRFLKQNNFLKHIGDSTANAPVPNGALKQRCAWLVFGWVTVWV**

MLQNRFREILHENYKDFLKIYTDGSKDETGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHPCWYFWKRSSSQISIKFLWCPSHVGISG*************EPITNHSLLLEEMKSLAKKHFYQKWNTTWSNVNPNENKLRRIKST**********ARLDEVCLMRMRIGHTKITHSYLFKREERPICDSCHEPVTVEHIILHCNKLRFRPPSFLGNSLANILSDNPDSISSLMRFLKQNNFLKHIGDSTANAPVPNGALKQRCAWLVFGWVTVWVMA

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		389
125901787		1222	pol-like protein [Biomphalaria glabrata]	0.673	0.214	0.284	6e-26
427791807		1212	Putative tick transposon, partial [Rhipi	0.712	0.228	0.254	2e-24
427791321		1210	Putative tick transposon, partial [Rhipi	0.712	0.228	0.254	2e-24
443693558		502	hypothetical protein CAPTEDRAFT_189741,	0.580	0.450	0.295	9e-24
443695973		261	hypothetical protein CAPTEDRAFT_23017, p	0.580	0.865	0.291	1e-23
443721618		471	hypothetical protein CAPTEDRAFT_200496,	0.624	0.515	0.280	2e-23
443712830		397	hypothetical protein CAPTEDRAFT_202466 [	0.573	0.561	0.289	1e-21
443733872		400	hypothetical protein CAPTEDRAFT_197082 [	0.542	0.527	0.308	4e-20
427798889		1199	Putative tick transposon, partial [Rhipi	0.529	0.171	0.336	1e-19
443730613		233	hypothetical protein CAPTEDRAFT_206814 [	0.321	0.536	0.393	4e-19

>gi\|125901787\|gb\|ABN58714.1\| pol-like protein [Biomphalaria glabrata]	Back alignment and taxonomy information

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 145/337 (43%), Gaps = 75/337 (22%)

Query: 1    MLQNRFREILHENYKDFLKIYTDGSKDETGVGCALIIPQLNVTKRFTLNKYSSIFHAELF 60
            +LQ  FRE L E+Y D   IYTDGSK E  V CA       +++R               
Sbjct: 941  ILQVHFRE-LQESYGDCGTIYTDGSKMEGKVACACSFRNKTISRR--------------- 984

Query: 61   SILQSLKNAKLLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIPHAELFSILQSLKNAEL 120
                               + D  S F A                 EL +IL +L   + 
Sbjct: 985  -------------------LPDGCSIFTA-----------------ELHAILLALMAVKA 1008

Query: 121  LNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHPCWYFWKRS 180
                K +I SDS S+ QA+  +    PLV +          S+K L   +          
Sbjct: 1009 SERSKFIICSDSKSALQALGRMKTDIPLVHK----------SLKLLDLIT---------- 1048

Query: 181  SSQISIKFLWCPSHVGISGNDQADTEAKKATSEPITNHSLLLEEMKSLAKKHFYQKWNTT 240
            + +  + F+W PSHVGI GN+ AD EAK+A +  ++   +   +++       Y++W   
Sbjct: 1049 ADRRDVTFIWVPSHVGIEGNEAADREAKRALNHAVSGTQIPYSDLRQSIASATYREWQNR 1108

Query: 241  WSNVNPNENKLRRIKSTTTPWKTSSQKARLDEVCLMRMRIGHTKITHSYLFKREERPICD 300
            W       +KLR+I +      TS    R     + R+RIGHT ITHS++ KREE P+C+
Sbjct: 1109 WEA--ETHSKLRQIVADVRWRPTSKGLTRRGSTTMSRLRIGHTYITHSFVLKREEPPLCE 1166

Query: 301  SCHEPVTVEHIILHCNKLR-FRPPSFLGNSLANILSD 336
             C   +TVEHI++ C + +  R   F   +L  + ++
Sbjct: 1167 YCDSRLTVEHILVDCPRYQDVRAKHFRATNLKTLFNN 1203

Source: Biomphalaria glabrata

Species: Biomphalaria glabrata

Genus: Biomphalaria

Family: Planorbidae

Order:

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi\|427791807\|gb\|JAA61355.1\| Putative tick transposon, partial [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|427791321\|gb\|JAA61112.1\| Putative tick transposon, partial [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|443693558\|gb\|ELT94903.1\| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]	Back alignment and taxonomy information

>gi\|443695973\|gb\|ELT96755.1\| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]	Back alignment and taxonomy information

>gi\|443721618\|gb\|ELU10867.1\| hypothetical protein CAPTEDRAFT_200496, partial [Capitella teleta]	Back alignment and taxonomy information

>gi\|443712830\|gb\|ELU05953.1\| hypothetical protein CAPTEDRAFT_202466 [Capitella teleta]	Back alignment and taxonomy information

>gi\|443733872\|gb\|ELU18078.1\| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]	Back alignment and taxonomy information

>gi\|427798889\|gb\|JAA64896.1\| Putative tick transposon, partial [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|443730613\|gb\|ELU16038.1\| hypothetical protein CAPTEDRAFT_206814 [Capitella teleta]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		389
ASPGD\|ASPL0000075333		486	AN10625 [Emericella nidulans (	0.349	0.279	0.283	1.1e-09
ASPGD\|ASPL0000055652		1054	AN0368 [Emericella nidulans (t	0.611	0.225	0.242	0.00052

ASPGD\|ASPL0000075333 AN10625 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

 Score = 132 (51.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 42/148 (28%), Positives = 70/148 (47%)

Query:   178 KRSSSQISIKFLWCPSHVGISGNDQADTEAKKATS-EPITNHSLLLEEMKSLAKKHFYQK 236
             K   + +++ F W P+H G+ GN+QAD  AK+AT    I  H   +  ++S  K+  ++ 
Sbjct:   278 KGRKAGLNVHFRWIPAHRGVEGNEQADRRAKEATGWRRIRGHRGRMT-IRSAVKRRAHEV 336

Query:   237 WNTTWSNVNPNENKLRRI-KSTTTPWK----TSSQKARLDEVCLMRMRIGHTKITHSYLF 291
              N  W N   + +  R + + T TP +          R     +++MR G   + H YL+
Sbjct:   337 VNARWENDWKSCHHGRELYELTPTPTRKVLRVHQDLHRALSTIIVQMRTGKIGLRH-YLY 395

Query:   292 KR--EERPICD-SCHEPV-TVEHIILHC 315
             +R   + P  D  C     +V HI+L C
Sbjct:   396 QRGVPDVPNSDCQCGRATQSVRHILLAC 423

GO:0008150 "biological_process" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004523 "ribonuclease H activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD\|ASPL0000055652 AN0368 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26.4	LOW CONFIDENCE prediction!
3rd Layer	3.1.26	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		389
cd09276		128	cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI dom	7e-19
pfam00075		126	pfam00075, RNase_H, RNase H	1e-06
cd06222		123	cd06222, RNase_H, RNase H is an endonuclease that	3e-06
cd09273		135	cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase	7e-06
COG0328		154	COG0328, RnhA, Ribonuclease HI [DNA replication, r	3e-05
cd06222		123	cd06222, RNase_H, RNase H is an endonuclease that	5e-05
cd09280		150	cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase	1e-04
pfam13456		88	pfam13456, RVT_3, Reverse transcriptase-like	0.003
pfam13456		88	pfam13456, RVT_3, Reverse transcriptase-like	0.003

>gnl\|CDD\|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse transcriptases	Back alignment and domain information

 Score = 81.5 bits (202), Expect = 7e-19
 Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 68/194 (35%)

Query: 20  IYTDGSKDETGVGCALIIPQLNVTKR-FTLNKYSSIFHAELFSILQSLKNAKLLNIKKVL 78
           IYTDGSK E   G    I +     R + L  Y S+F AEL +IL++L+ A         
Sbjct: 2   IYTDGSKLEGRTGAGFAIVRKGTISRSYKLGPYCSVFDAELLAILEALQLALREGR---- 57

Query: 79  IISDSLSSFQAISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQA 138
                                                        +K+ I SDS ++ +A
Sbjct: 58  -------------------------------------------RARKITIFSDSQAALKA 74

Query: 139 ISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHPCWYFWKRSSSQISIKFLWCPSHVGIS 198
           + +    +PLV  I++                         ++  + ++  W P H GI 
Sbjct: 75  LRSPRSSSPLVLRIRKAIRE--------------------LANHGVKVRLHWVPGHSGIE 114

Query: 199 GNDQADTEAKKATS 212
           GN++AD  AK+A  
Sbjct: 115 GNERADRLAKEAAK 128

Ribonuclease H (RNase H) is classified into two families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). Ribonuclease HI (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as an adjunct domain to the reverse transcriptase gene in retroviruses, long-term repeat (LTR)-bearing retrotransposons and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD), are unvaried across all RNase H domains. The position of the RNase domain of non-LTR and LTR transposons is at the carboxyl terminal of the reverse transcriptase (RT) domain and their RNase domains group together, indicating a common evolutionary origin. Many non-LTR transposons have lost the RNase domain because their activity is at the nucleus and cellular RNase may suffice; however LTR retotransposons always encode their own RNase domain because it requires RNase activity in RNA-protein particles in the cytoplasm. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. Length = 128

>gnl\|CDD\|215695 pfam00075, RNase_H, RNase H	Back alignment and domain information

>gnl\|CDD\|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner	Back alignment and domain information

>gnl\|CDD\|187697 cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase HI in long-term repeat retroelements	Back alignment and domain information

>gnl\|CDD\|223405 COG0328, RnhA, Ribonuclease HI [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner	Back alignment and domain information

>gnl\|CDD\|187704 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase H is longer and more complex than their prokaryotic counterparts and unlike prokaryote, RNase H are essential in higher eukaryote	Back alignment and domain information

>gnl\|CDD\|205634 pfam13456, RVT_3, Reverse transcriptase-like	Back alignment and domain information

>gnl\|CDD\|205634 pfam13456, RVT_3, Reverse transcriptase-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		389
COG0328		154	RnhA Ribonuclease HI [DNA replication, recombinati	99.9
PRK06548		161	ribonuclease H; Provisional	99.89
PRK08719		147	ribonuclease H; Reviewed	99.88
PRK00203		150	rnhA ribonuclease H; Reviewed	99.87
PF00075		132	RNase_H: RNase H; InterPro: IPR002156 The RNase H	99.85
cd06222		130	RnaseH RNase H (RNase HI) is an endonuclease that	99.73
KOG3752\|consensus		371		99.72
PRK13907		128	rnhA ribonuclease H; Provisional	99.68
PRK07708		219	hypothetical protein; Validated	99.53
PRK07238		372	bifunctional RNase H/acid phosphatase; Provisional	99.44
PF13456		87	RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH	98.89
PF13966		86	zf-RVT: zinc-binding in reverse transcriptase	95.69
PF05380		159	Peptidase_A17: Pao retrotransposon peptidase ; Int	87.94

>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]	Back alignment and domain information

Probab=99.90  E-value=3.2e-23  Score=182.47  Aligned_cols=142  Identities=19%  Similarity=0.178  Sum_probs=110.8

Q ss_pred             CcEEEEEcCCcc--CCCeEEEEEEecCCEEE-EEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHhc
Q psy5156          16 DFLKIYTDGSKD--ETGVGCALIIPQLNVTK-RFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISN   92 (389)
Q Consensus        16 ~~~~IyTDGS~~--~~~~G~avv~~~~~~~~-~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~l~~   92 (389)
                      ..+.||||||+.  +|..|+|+|+..+...+ .......+||++||+.|++.||+.+.+.+...|.|+|||++|+++|+.
T Consensus         2 ~~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~~   81 (154)
T COG0328           2 KKVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEGRTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGITR   81 (154)
T ss_pred             CceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeeecccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHH
Confidence            468999999998  56789998887443333 222223899999999999999999998888999999999999999995


Q ss_pred             CCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccCCCCC
Q psy5156          93 LYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHP  172 (389)
Q Consensus        93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (389)
                      +...++--.+.                             .++    +.++.+.+|++++.++.+...            
T Consensus        82 w~~~w~~~~w~-----------------------------~~~----~~pvkn~dl~~~~~~~~~~~~------------  116 (154)
T COG0328          82 WIVKWKKNGWK-----------------------------TAD----KKPVKNKDLWEELDELLKRHE------------  116 (154)
T ss_pred             HHhhccccCcc-----------------------------ccc----cCccccHHHHHHHHHHHhhCC------------
Confidence            54443211100                             011    456666788888888876543            


Q ss_pred             CcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCCC
Q psy5156         173 CWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEP  214 (389)
Q Consensus       173 ~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~~  214 (389)
                                  .|.+.|||||+|.++||.||+||+.|++.+
T Consensus       117 ------------~v~~~WVkgH~g~~~NeraD~LA~~~~~~~  146 (154)
T COG0328         117 ------------LVFWEWVKGHAGHPENERADQLAREAARAA  146 (154)
T ss_pred             ------------eEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence                        899999999999999999999999998765

>PRK06548 ribonuclease H; Provisional	Back alignment and domain information

>PRK08719 ribonuclease H; Reviewed	Back alignment and domain information

>PRK00203 rnhA ribonuclease H; Reviewed	Back alignment and domain information

>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site	Back alignment and domain information

>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner	Back alignment and domain information

>KOG3752\|consensus	Back alignment and domain information

>PRK13907 rnhA ribonuclease H; Provisional	Back alignment and domain information

>PRK07708 hypothetical protein; Validated	Back alignment and domain information

>PRK07238 bifunctional RNase H/acid phosphatase; Provisional	Back alignment and domain information

>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B	Back alignment and domain information

>PF13966 zf-RVT: zinc-binding in reverse transcriptase	Back alignment and domain information

>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		389
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3p1g_A		165	Xenotropic murine leukemia virus-related virus (X	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 54.5 bits (130), Expect = 4e-08
 Identities = 61/402 (15%), Positives = 116/402 (28%), Gaps = 137/402 (34%)

Query: 2   LQNRFREIL-HENYKDFLKIYTDGSKDET----GVGCALII----------PQLNVTKRF 46
           +Q   R +L  + Y++ L +  +    +      + C +++               T   
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 47  TLNKYSSIF-HAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIPH 105
           +L+ +S      E+ S+L      K L+ +        L   + ++     NP    I  
Sbjct: 290 SLDHHSMTLTPDEVKSLL-----LKYLDCRP-----QDLPR-EVLTT----NPRRLSIIA 334

Query: 106 AELFSILQSLKNAELLNIKKVL-IISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIK 164
             +   L +  N + +N  K+  II  SL+  +       P     E ++ +   ++S+ 
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-------PA----EYRKMFD--RLSV- 380

Query: 165 FLWCPSHPCWYFWKRSSSQISIKFL---WCPSHVGISGNDQADTEAKKATSEPITNHSLL 221
                      F    S+ I    L   W               +  K+    + N    
Sbjct: 381 -----------F--PPSAHIPTILLSLIWF--------------DVIKSDVMVVVNKL-- 411

Query: 222 LEEMKSLAKKHFYQKWNTTWSNVNPNENKLR------RIKSTTTPWKTSSQKARLDEVCL 275
                SL +K              P E+ +        +K           +  L     
Sbjct: 412 --HKYSLVEKQ-------------PKESTISIPSIYLELK------VKLENEYAL----- 445

Query: 276 MRMRIGHTKITHSYLFKREERPICDSCHEPVT----VEHIILHCNKLR-------FRPP- 323
                 H  I   Y   +      D    P        HI  H   +        FR   
Sbjct: 446 ------HRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 324 ---SFLGNSL--ANILSDNPDSISSLMRFLKQNNFLKHIGDS 360
               FL   +   +   +   SI + ++ LK   +  +I D+
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLK--FYKPYICDN 537

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A Length = 165	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		389
2qkb_A		154	Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy	99.91
3qio_A		150	GAG-POL polyprotein; RNAse H, inhibitor, nuclease,	99.9
3h08_A		146	RNH (ribonuclease H); RNAse H, 3D-structure, endon	99.89
1jl1_A		155	Ribonuclease HI; RNAse HI, protein stability, ther	99.88
2e4l_A		158	Ribonuclease HI, RNAse HI; hydrolase, endoribonucl	99.88
2kq2_A		147	Ribonuclease H-related protein; PSI, NESG, protein	99.88
3p1g_A		165	Xenotropic murine leukemia virus-related virus (X	99.87
1ril_A		166	Ribonuclease H; hydrolase(endoribonuclease); 2.80A	99.86
2lsn_A		165	Reverse transcriptase; RNAse H, viral protein; NMR	99.85
3hst_B		141	Protein RV2228C/MT2287; ribonuclease H1, RV2228C N	99.8
3u3g_D		140	Ribonuclease H, RNAse H1; hydrolase, cleave the RN	99.79
1mu2_A		555	HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym	99.78
2zd1_A		557	Reverse transcriptase/ribonuclease H; P51/P66, het	99.77
2ehg_A		149	Ribonuclease HI; RNAse HI, hyperthermophilic archa	99.76
1zbf_A		142	Ribonuclease H-related protein; RNAse H, RNA/DNA h	99.47
4htu_A		134	Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine,	99.29
3u3g_D		140	Ribonuclease H, RNAse H1; hydrolase, cleave the RN	85.28
3hst_B		141	Protein RV2228C/MT2287; ribonuclease H1, RV2228C N	81.76
1rw3_A		455	POL polyprotein; RNA and DNA dependent DNA polymer	80.46

>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*	Back alignment and structure

Probab=99.91  E-value=4.3e-24  Score=187.96  Aligned_cols=141  Identities=21%  Similarity=0.325  Sum_probs=103.5

Q ss_pred             cCCCcEEEEEcCCccCCC-----eEEEEEEecCC-EEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHH
Q psy5156          13 NYKDFLKIYTDGSKDETG-----VGCALIIPQLN-VTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSS   86 (389)
Q Consensus        13 ~~~~~~~IyTDGS~~~~~-----~G~avv~~~~~-~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~a   86 (389)
                      ++++.+.||||||+..++     +|+|+|+.++. ......+++.+||+.||+.|++.||+.+.+.+..++.|+|||+++
T Consensus         3 ~~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~v   82 (154)
T 2qkb_A            3 HMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFT   82 (154)
T ss_dssp             EETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHH
T ss_pred             CCCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHH
Confidence            456789999999997432     79999887542 223345555789999999999999999988778999999999999


Q ss_pred             HHHHhcCCCCC---ccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhh
Q psy5156          87 FQAISNLYHPN---PLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISI  163 (389)
Q Consensus        87 l~~l~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  163 (389)
                      ++.|.++...+   ++.                                .+.    +.+..+.+++++|.+++.      
T Consensus        83 i~~i~~~~~~w~~~~w~--------------------------------~~~----~~~~~n~~l~~~i~~l~~------  120 (154)
T 2qkb_A           83 INGITNWVQGWKKNGWK--------------------------------TSA----GKEVINKEDFVALERLTQ------  120 (154)
T ss_dssp             HHHHHTHHHHHHTTTSB--------------------------------CTT----SSBCTTHHHHHHHHHHHT------
T ss_pred             HhhhhhhHHHHHhcccc--------------------------------ccC----CCccccHHHHHHHHHHHc------
Confidence            99999853211   100                                000    011112234555555442      


Q ss_pred             hcccCCCCCCcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCCC
Q psy5156         164 KFLWCPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEP  214 (389)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~~  214 (389)
                                         +..|.|.|||||+|++|||.||+|||+|+..+
T Consensus       121 -------------------~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~  152 (154)
T 2qkb_A          121 -------------------GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS  152 (154)
T ss_dssp             -------------------TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred             -------------------CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence                               35799999999999999999999999998765

PyMOL of 2qkb

>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A	Back alignment and structure

>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}	Back alignment and structure

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...	Back alignment and structure

>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A	Back alignment and structure

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A	Back alignment and structure

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A	Back alignment and structure

>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A	Back alignment and structure

>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}	Back alignment and structure

>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}	Back alignment and structure

>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}	Back alignment and structure

>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B	Back alignment and structure

>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...	Back alignment and structure

>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A	Back alignment and structure

>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*	Back alignment and structure

>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A	Back alignment and structure

>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}	Back alignment and structure

>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}	Back alignment and structure

>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		389
d1mu2a1		126	c.55.3.1 (A:430-555) HIV RNase H (Domain of revers	6e-05
d1rila_		147	c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermoph	1e-04
d1jl1a_		152	c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli	4e-04

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Length = 126	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 11/56 (19%), Positives = 20/56 (35%)

Query: 155 TYSSAQISIKFLWCPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKA 210
            Y    ++ +     S       +    + +I   W P+H GI GN + D    + 
Sbjct: 70  QYVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQG 125

PyMOL of d1mu2a1

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]} Length = 147	Back information, alignment and structure

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} Length = 152	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		389
d1mu2a1		126	HIV RNase H (Domain of reverse transcriptase) {Hum	99.9
d1rila_		147	RNase H (RNase HI) {Thermus thermophilus [TaxId: 2	99.89
d1jl1a_		152	RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	99.89
d1s1ta1		110	HIV RNase H (Domain of reverse transcriptase) {Hum	99.75
d1zbfa1		132	BH0863-like Ribonuclease H {Bacillus halodurans [T	99.61

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=99.90  E-value=1.8e-23  Score=176.02  Aligned_cols=123  Identities=23%  Similarity=0.254  Sum_probs=90.2

Q ss_pred             hcCCCcEEEEEcCCccC--CCeEEEEEEecCCEEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHH
Q psy5156          12 ENYKDFLKIYTDGSKDE--TGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQA   89 (389)
Q Consensus        12 ~~~~~~~~IyTDGS~~~--~~~G~avv~~~~~~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~   89 (389)
                      ++.++..++|||||+..  +..|+|++++.+.. ....+ +..||+.|||.||+.||+.    ...++.|+|||+++++.
T Consensus         2 ~p~~~~~t~YTDGS~~~n~~~~~~g~~~~~~~~-~~~~~-~~~tnn~AEl~Ai~~al~~----~~~~i~I~tDS~~v~~~   75 (126)
T d1mu2a1           2 DPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKD-KVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGI   75 (126)
T ss_dssp             SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHH
T ss_pred             CCCCCCcEEEEcCCCCCCCCcEEEEEEecCCCE-EEEec-CCCcchHHHHHHHHHHhcc----CCcceEEEechHHHHHH
Confidence            34567789999999873  34667766665443 22233 3579999999999999985    36789999999999999


Q ss_pred             HhcCCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccCC
Q psy5156          90 ISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCP  169 (389)
Q Consensus        90 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (389)
                      +.++...+..                                              ....+.++++..            
T Consensus        76 ~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~------------   97 (126)
T d1mu2a1          76 VASQPTESES----------------------------------------------KIVNQIIEEMIK------------   97 (126)
T ss_dssp             HHTCCSEESC----------------------------------------------HHHHHHHHHHHH------------
T ss_pred             HhcCCccccc----------------------------------------------hHHHHHHHHhhh------------
Confidence            9987654321                                              001122333332            


Q ss_pred             CCCCcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhc
Q psy5156         170 SHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKAT  211 (389)
Q Consensus       170 ~~~~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~  211 (389)
                                   ..+|.|.|||||+|++|||.||+||++|.
T Consensus        98 -------------~~~v~~~wV~gH~g~~gNe~AD~LA~~ai  126 (126)
T d1mu2a1          98 -------------KEAIYVAWVPAHKGIGGNQEVDHLVSQGI  126 (126)
T ss_dssp             -------------CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred             -------------cceeEEEEEeCCCCCcchHHHHHHHHhhC
Confidence                         24899999999999999999999999974

PyMOL of d1mu2a1

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}	Back information, alignment and structure

>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure